Citrus Sinensis ID: 000751
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1303 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M3B9 | 1408 | ABC transporter B family | yes | no | 0.975 | 0.902 | 0.870 | 0.0 | |
| Q8LPT1 | 1407 | ABC transporter B family | no | no | 0.977 | 0.905 | 0.863 | 0.0 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.909 | 0.921 | 0.380 | 0.0 | |
| P36619 | 1362 | Leptomycin B resistance p | yes | no | 0.919 | 0.879 | 0.321 | 1e-169 | |
| P34712 | 1321 | Multidrug resistance prot | yes | no | 0.881 | 0.869 | 0.309 | 1e-167 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.473 | 0.479 | 0.407 | 1e-145 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.475 | 0.487 | 0.429 | 1e-145 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.465 | 0.494 | 0.426 | 1e-144 | |
| Q9C7F8 | 1245 | ABC transporter B family | no | no | 0.437 | 0.457 | 0.441 | 1e-142 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.452 | 0.470 | 0.431 | 1e-142 |
| >sp|Q9M3B9|AB20B_ARATH ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2269 bits (5880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1114/1279 (87%), Positives = 1196/1279 (93%), Gaps = 8/1279 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
L +L+L IVYIAGGVF +GWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 134 LVQLSLTIVYIAGGVFISGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 193
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATF SGL I FVNCW+IALITL TGPFIVAAG
Sbjct: 194 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFISGLVIGFVNCWEIALITLATGPFIVAAG 253
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAENIQDAYAEAA IAEQA+SYIRTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 254 GISNIFLHRLAENIQDAYAEAAGIAEQAISYIRTLYAFTNETLAKYSYATSLQATLRYGI 313
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLW+GRF V + +A+GGEI+ ALFAVILSGLGLNQAA
Sbjct: 314 LISLVQGLGLGFTYGLAICSCALQLWIGRFFVHNGRANGGEIIAALFAVILSGLGLNQAA 373
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMI+RSSS N +G L SV GNIEFRNVYFSYLSRPEIPILS
Sbjct: 374 TNFYSFDQGRIAAYRLFEMITRSSSVANQEGAVLASVQGNIEFRNVYFSYLSRPEIPILS 433
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG
Sbjct: 434 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 493
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIR+NIAYGRDATLDQIEEAAK AHAHTFISSLEKGYETQVGRAGLA+T
Sbjct: 494 LVTQEPALLSLSIRENIAYGRDATLDQIEEAAKNAHAHTFISSLEKGYETQVGRAGLAMT 553
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNP+ILLLDEVTGGLDFEAER VQEALDLLMLGRSTIIIARRLSLI
Sbjct: 554 EEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERIVQEALDLLMLGRSTIIIARRLSLI 613
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
+NADYIAVM+EG+L EMGTHDEL+ G LYAELLKCEEA KLPRRMPVRNYKE++ F++E
Sbjct: 614 KNADYIAVMEEGQLVEMGTHDELINLGGLYAELLKCEEATKLPRRMPVRNYKESAVFEVE 673
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQR-VGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
+DSSA QEPSSPKM+KSPSLQR G++RP + FD++ESPK SP SEK E+GM +
Sbjct: 674 RDSSAGCGVQEPSSPKMIKSPSLQRGSGVFRPQELCFDTEESPKAHSPASEKTGEDGMSL 733
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D ADKEP+I+RQDSFEMRLP LPK+DV +Q SNGS+PESP+SPLLTSDPKNERSHSQ
Sbjct: 734 DCADKEPTIKRQDSFEMRLPHLPKVDVQCP-QQKSNGSEPESPVSPLLTSDPKNERSHSQ 792
Query: 688 TFSRPHSHSDDFPTKVREEESK---HQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFN 744
TFSRP S DD TK + SK H+++PSFWRLA+LSF EWLYAVLGS+GAAIFGSFN
Sbjct: 793 TFSRPLSSPDD--TKANGKASKDAQHKESPSFWRLAQLSFPEWLYAVLGSLGAAIFGSFN 850
Query: 745 PLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMT 804
PLLAYVI L+VT YYK + HLREEV+KWCLIIACMG+VTVVANFLQHFYFGIMGEKMT
Sbjct: 851 PLLAYVIALVVTEYYK-SKGGHLREEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMT 909
Query: 805 ERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIV 864
ERVRRMMFSAMLRNEVGWFD+EENS DTLSMRLANDATFVRAAFSNRLSIFIQDS AVIV
Sbjct: 910 ERVRRMMFSAMLRNEVGWFDDEENSPDTLSMRLANDATFVRAAFSNRLSIFIQDSFAVIV 969
Query: 865 AVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIY 924
A++IG+LL WRLALVALATLPIL+LSAIAQKLWLAGFS+GIQ+MHRKASLVLEDAVRNIY
Sbjct: 970 ALLIGLLLGWRLALVALATLPILTLSAIAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIY 1029
Query: 925 TVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVR 984
TVVAFCAGNKVMELYR+QL++I +S+LHGMAIGFAFGFSQFLLFACNALLLW T SV
Sbjct: 1030 TVVAFCAGNKVMELYRMQLQRILRQSYLHGMAIGFAFGFSQFLLFACNALLLWCTALSVN 1089
Query: 985 DGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSA 1044
GYM L TA+ EYMVFSFATFALVEPFGLAPYILKRRKSLISVFEI+DRVP I+PDD+SA
Sbjct: 1090 RGYMKLSTAITEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIVDRVPTIEPDDNSA 1149
Query: 1045 VKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER 1104
+KPPNVYGSIELKNVDFCYP+RPE+LVLSNFSLK++GGQTVAVVGVSGSGKSTIISL+ER
Sbjct: 1150 LKPPNVYGSIELKNVDFCYPTRPEILVLSNFSLKISGGQTVAVVGVSGSGKSTIISLVER 1209
Query: 1105 FYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKE 1164
+YDPVAGQVLLDGRDLKLYNLRWLR+H+GLVQQEPIIFSTTIRENIIYARHNASEAE+KE
Sbjct: 1210 YYDPVAGQVLLDGRDLKLYNLRWLRSHMGLVQQEPIIFSTTIRENIIYARHNASEAEMKE 1269
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
AARIANAHHFISSLPHGYDTH+GMRGV+LTPGQKQRIAIARVVLKNAPI+L+DEASSSIE
Sbjct: 1270 AARIANAHHFISSLPHGYDTHIGMRGVELTPGQKQRIAIARVVLKNAPIILIDEASSSIE 1329
Query: 1225 SESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGL 1284
SESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL AKNGL
Sbjct: 1330 SESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLAAKNGL 1389
Query: 1285 YVRLMQPHYGKGLRQHRLV 1303
YVRLMQPH+GKGLRQHRL+
Sbjct: 1390 YVRLMQPHFGKGLRQHRLI 1408
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPT1|AB6B_ARATH ABC transporter B family member 6 OS=Arabidopsis thaliana GN=ABCB6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 2251 bits (5832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1103/1277 (86%), Positives = 1182/1277 (92%), Gaps = 3/1277 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
L EL+L IVYIAGGVF +GWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 132 LLELSLTIVYIAGGVFISGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 191
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATF SGL I FVNCW+IALITL TGPFIVAAG
Sbjct: 192 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFISGLIIGFVNCWEIALITLATGPFIVAAG 251
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAENIQDAYAEAASIAEQAVSY+RTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 252 GISNIFLHRLAENIQDAYAEAASIAEQAVSYVRTLYAFTNETLAKYSYATSLQATLRYGI 311
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCA+QLW+GRF V H++A+GGEI+TALFAVILSGLGLNQAA
Sbjct: 312 LISLVQGLGLGFTYGLAICSCAMQLWIGRFFVIHHRANGGEIITALFAVILSGLGLNQAA 371
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMISRSSS TN +G L +V GNIEFRNVYFSYLSRPEIPILS
Sbjct: 372 TNFYSFDQGRIAAYRLFEMISRSSSGTNQEGIILSAVQGNIEFRNVYFSYLSRPEIPILS 431
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG
Sbjct: 432 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 491
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIR+NIAYGRDATLDQIEEAAK AHAHTFISSLEKGYETQVG+ GL LT
Sbjct: 492 LVTQEPALLSLSIRENIAYGRDATLDQIEEAAKKAHAHTFISSLEKGYETQVGKTGLTLT 551
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLL+P+ILLLDEVTGGLDFEAER VQEALDLLMLGRSTIIIARRLSLI
Sbjct: 552 EEQKIKLSIARAVLLDPTILLLDEVTGGLDFEAERVVQEALDLLMLGRSTIIIARRLSLI 611
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
RNADYIAVM+EG+L EMGTHDEL+ G+LYAELLKCEEA KLPRRMPVRNY +++ FQ E
Sbjct: 612 RNADYIAVMEEGQLLEMGTHDELINLGNLYAELLKCEEATKLPRRMPVRNYNDSAAFQAE 671
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQRV-GIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
+DSSA FQEPSSPKM KSPSLQR ++R + F+S+ESP SP EK+ ENG +
Sbjct: 672 RDSSAGRGFQEPSSPKMAKSPSLQRGHNVFRSQELCFNSEESPNDHSPAPEKLGENGSSL 731
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D +KEP+I+RQDSFEMRLPELPKID+ RQ SNGSDPESPISPLL SDP+NERSHSQ
Sbjct: 732 DVGEKEPTIKRQDSFEMRLPELPKIDIQCPQRQKSNGSDPESPISPLLISDPQNERSHSQ 791
Query: 688 TFSRPHSHSDDFPTKVR-EEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRP HSDD V+ ++ +H++ PSFWRLA+LSF EWLYAVLGSIGAAIFGSFNPL
Sbjct: 792 TFSRPLGHSDDTSASVKVAKDGQHKEPPSFWRLAQLSFPEWLYAVLGSIGAAIFGSFNPL 851
Query: 747 LAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTER 806
LAYVI L+VT YY + HLREEV+KWCLIIACMG+VTVVANFLQHFYFGIMGEKMTER
Sbjct: 852 LAYVIALVVTTYYT-SKGSHLREEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTER 910
Query: 807 VRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 866
VRRMMFSAMLRNEVGW+DEEENS DTLSMRLANDATFVRAAFSNRLSIFIQDS AVIVA+
Sbjct: 911 VRRMMFSAMLRNEVGWYDEEENSPDTLSMRLANDATFVRAAFSNRLSIFIQDSFAVIVAI 970
Query: 867 IIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTV 926
+IG+LL WRLALVALATLP+L+LSAIAQKLWLAGFS+GIQ+MHRKASLVLEDAVRNIYTV
Sbjct: 971 LIGLLLGWRLALVALATLPVLTLSAIAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTV 1030
Query: 927 VAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDG 986
VAFCAGNKVMELYRLQL++I +SF HGMAIGFAFGFSQFLLFACNALLLWYT SV
Sbjct: 1031 VAFCAGNKVMELYRLQLQRILRQSFFHGMAIGFAFGFSQFLLFACNALLLWYTALSVDRR 1090
Query: 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVK 1046
YM L TAL EYMVFSFATFALVEPFGLAPYILKRR+SL SVFEIIDRVP I+PDD+SA+
Sbjct: 1091 YMKLSTALTEYMVFSFATFALVEPFGLAPYILKRRRSLASVFEIIDRVPTIEPDDTSALS 1150
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
PPNVYGSIELKN+DFCYP+RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER+Y
Sbjct: 1151 PPNVYGSIELKNIDFCYPTRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERYY 1210
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
DPVAGQVLLDGRDLK YNLRWLR+H+GL+QQEPIIFSTTIRENIIYARHNASEAE+KEAA
Sbjct: 1211 DPVAGQVLLDGRDLKSYNLRWLRSHMGLIQQEPIIFSTTIRENIIYARHNASEAEMKEAA 1270
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
RIANAHHFISSLPHGYDTH+GMRGV+LT GQKQRIAIARVVLKNAPILL+DEASSSIESE
Sbjct: 1271 RIANAHHFISSLPHGYDTHIGMRGVELTQGQKQRIAIARVVLKNAPILLIDEASSSIESE 1330
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286
SSRVVQEALDTLIMGNKTTILIAHR AMMRHVDNIVVLNGG+IVEEGTHD L KNGLYV
Sbjct: 1331 SSRVVQEALDTLIMGNKTTILIAHRVAMMRHVDNIVVLNGGKIVEEGTHDCLAGKNGLYV 1390
Query: 1287 RLMQPHYGKGLRQHRLV 1303
RLMQPH+GK LR+H+L+
Sbjct: 1391 RLMQPHFGKNLRRHQLI 1407
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/1305 (38%), Positives = 755/1305 (57%), Gaps = 120/1305 (9%)
Query: 9 GFPVPKFV-DCLVVAFG-----VEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQT 62
GFP+ + L+ AFG +S++AL V++ G FAA ++++S W+++GERQ
Sbjct: 76 GFPLMTLLFGDLIDAFGENQTNTTDKVSKVALKFVWLGIGTFAAAFLQLSGWMISGERQA 135
Query: 63 AVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG 122
A IRS Y++ +L QD++FFD N G++V ++ D +LIQ A+ EKVG I +ATF G
Sbjct: 136 ARIRSLYLKTILRQDIAFFDIDTNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGG 195
Query: 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRT 182
IAFV W + L+ L + P +V AG + I + + A Q AYA+AA++ EQ + IRT
Sbjct: 196 FVIAFVRGWLLTLVMLSSIPLLVMAGALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRT 255
Query: 183 LYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTH 242
+ +FT E A +Y L + G++ GLGLG + + CS AL +W G L+
Sbjct: 256 VASFTGEKQAISNYNKHLVTAYKAGVIEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILD 315
Query: 243 NKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNY--DGN 300
GG+++ + AV+ + L Q + +F G+ AAY+++E I R + +Y +G
Sbjct: 316 KGYTGGQVLNIIIAVLTGSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGK 375
Query: 301 TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360
L + G+IE ++VYF+Y +RP+ I GF L + + VALVG++GSGKS+++ L+ERF
Sbjct: 376 VLDDIKGDIELKDVYFTYPARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERF 435
Query: 361 YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEA 419
YDP G+VL+DG N+K +L+W+RS+IGLV+QEP L + SI+DNIAYG+ DAT ++I+ A
Sbjct: 436 YDPQAGDVLIDGINLKEFQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAA 495
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
A++A+A F+ L +G +T VG G L+ QK ++++ARA+L +P ILLLDE T LD
Sbjct: 496 AELANASKFVDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDA 555
Query: 480 EAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LY 538
E+ER VQEALD +M+ R+T+++A RLS +RNAD IAV+ +G++ E G+H ELL + Y
Sbjct: 556 ESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAY 615
Query: 539 AELLKCEE-------AAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSP-S 590
++L++ +E AA+ + + ++K++S + SS S + S + S S
Sbjct: 616 SQLIRLQEEKKSDENAAEEQKMSSIESFKQSSL----RKSSLGRSLSKGGSSRGNSSRHS 671
Query: 591 LQRVGIYRPTDG-AFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPEL 649
G DG QE P +E K+ SI R + + PE+
Sbjct: 672 FNMFGFPAGIDGNVVQDQEEDDTTQPKTEP------------KKVSIFRIAA--LNKPEI 717
Query: 650 PKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESK 709
P + + S +NG PI +L S S + F +P P K++E+
Sbjct: 718 PVL-ILGSISAAANGVIL--PIFGILIS------SVIKAFFQP-------PKKLKED--- 758
Query: 710 HQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLRE 769
SFW + ++ VLG F ++AY P
Sbjct: 759 ----TSFWAI--------IFMVLG---------FASIIAY-----------PA------- 779
Query: 770 EVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENS 829
Q F+F I G K+ +R+R M F ++ EVGWFDE ENS
Sbjct: 780 ----------------------QTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPENS 817
Query: 830 ADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSL 889
+ T+ RL+ DA +R + L+ +Q+ ++++ +II L W+LA V LA LP+++L
Sbjct: 818 SGTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLIAL 877
Query: 890 SAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTK 949
+ ++ GFS +KM+ +AS V DAV +I TV +FCA +KVM +Y + +
Sbjct: 878 NGFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPMKN 937
Query: 950 SFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVE 1009
G+ G FGFS F+LF+ A + + V DG + + + + A A+ +
Sbjct: 938 GIRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQ 997
Query: 1010 PFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEV 1069
L+P K + S+F I+DR KIDP S NV G IEL++V F YP+RP+V
Sbjct: 998 SSSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPARPDV 1057
Query: 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129
+ + L + G+TVA+VG SGSGKST+I+L++RFYDP +G++ LDG ++K L+WLR
Sbjct: 1058 QIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKWLR 1117
Query: 1130 NHLGLVQQEPIIFSTTIRENIIYAR-HNASEAEVKEAARIANAHHFISSLPHGYDTHVGM 1188
GLV QEPI+F+ TIR NI Y + +ASE+E+ +A ++NAH FIS L GYDT VG
Sbjct: 1118 QQTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTMVGE 1177
Query: 1189 RGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILI 1248
RG+ L+ GQKQR+AIAR ++K+ +LLLDEA+S++++ES RVVQ+ALD +M N+TTI++
Sbjct: 1178 RGIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDR-VMVNRTTIVV 1236
Query: 1249 AHRAAMMRHVDNIVVLNGGRIVEEGTHDSLL-AKNGLYVRLMQPH 1292
AHR + +++ D I V+ G IVE+G HD+L+ K+G+Y L+Q H
Sbjct: 1237 AHRLSTIKNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQLH 1281
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|P36619|PMD1_SCHPO Leptomycin B resistance protein pmd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmd1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust.
Identities = 411/1279 (32%), Positives = 637/1279 (49%), Gaps = 81/1279 (6%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
+ LY +YIA GVF +I +I+ GER IR Y+ +L+Q++ +FD G G
Sbjct: 139 VDHFCLYFIYIAIGVFGCSYIYTVTFIIAGERIARRIRQDYLHAILSQNIGYFDRLGA-G 197
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
+I +++ +D IQ L EKVG +ATF SG IAF+ W+ LI P I
Sbjct: 198 EITTRITTDTNFIQDGLGEKVGLVFFAIATFVSGFVIAFIRHWKFTLILSSMFPAICGGI 257
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAF-TNETLAKYSYATSLQATLRYG 207
G+ F+ + + AE+++ E+ S IR +AF T + LAK Y L R+G
Sbjct: 258 GLGVPFITKNTKGQIAVVAESSTFVEEVFSNIRNAFAFGTQDILAKL-YNKYLITAQRFG 316
Query: 208 ILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQA 267
I ++ GL +G+ + +A L W G L+ +++ FAV+++ L
Sbjct: 317 INKAIAMGLMVGWMFFVAYGVYGLAFWEGGRLLHAGDLDVSKLIGCFFAVLIASYSLANI 376
Query: 268 ATNFYSFDQGRIAAYRLYEMISRSSSTTNYD--GNTLPSVHGNIEFRNVYFSYLSRPEIP 325
+ SF AA ++++ I R S + G+ + + G IE +N+ F Y +RPE+
Sbjct: 377 SPKMQSFVSCASAAKKIFDTIDRVSPINAFTPTGDVVKDIKGEIELKNIRFVYPTRPEVL 436
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
+L F L P+ K ALVG +GSGKS+II L+ERFYDP G+V LDG++++ L + LR+
Sbjct: 437 VLDNFSLVCPSGKITALVGASGSGKSTIIGLVERFYDPIGGQVFLDGKDLRTLNVASLRN 496
Query: 386 QIGLVTQEPALLSLSIRDNIAYGRDATLD----------QIEEAAKIAHAHTFISSLEKG 435
QI LV QEP L + ++ +NI YG T+ ++ +AAK+A+A+ FI +L +
Sbjct: 497 QISLVQQEPVLFATTVFENITYGLPDTIKGTLSKEELERRVYDAAKLANAYDFIMTLPEQ 556
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLG 495
+ T VG+ G ++ QK +++IARAV+ +P ILLLDE T LD ++E VQ+ALD
Sbjct: 557 FSTNVGQRGFLMSGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDNASRS 616
Query: 496 RSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMP 555
R+TI+IA RLS IRNAD I V++ G++ E G+H+ELL YA L+ EA KL
Sbjct: 617 RTTIVIAHRLSTIRNADNIVVVNAGKIVEQGSHNELLDLNGAYARLV---EAQKLSGG-- 671
Query: 556 VRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFD--SQESPKVL 613
EKD QE ++ +P + + D D S E+P +
Sbjct: 672 ------------EKD-------QEMVEEELEDAPREIPITSFGDDDEDNDMASLEAPMMS 712
Query: 614 SPPSEKMLENGM-PMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPIS 672
L N + D E + + E+ +P LP DV N E P
Sbjct: 713 HNTDTDTLNNKLNEKDNVVFEDKTLQHVASEI-VPNLPPADVGELN---------EEPKK 762
Query: 673 PLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVL 732
+ +E + HS F R + E + ++
Sbjct: 763 SKKSKKNNHEINSLTALWFIHS---------------------FVR----TMIEIICLLI 797
Query: 733 GSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQ 792
G + + I G+ P+ A V + + L + VN + + + +V A +
Sbjct: 798 GILASMICGAAYPVQAAVFARFLNIFTDLSSTDFLHK-VNVFAVYWLILAIVQFFAYAIS 856
Query: 793 HFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRL 852
+F E + +R+R +F +LR +V +FD EN+ ++ L+ + L
Sbjct: 857 NFAMTYAMEAVLQRIRYHLFRTLLRQDVEFFDRSENTVGAITTSLSTKIQSLEGLSGPTL 916
Query: 853 SIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKA 912
F Q +I I+ + W+L LV L+T P++ + + L + ++++
Sbjct: 917 GTFFQILTNIISVTILSLATGWKLGLVTLSTSPVIITAGYYRVRALDQVQEKLSAAYKES 976
Query: 913 SLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACN 972
+ ++ I TV + V Y L K +S + + G F +Q + F N
Sbjct: 977 AAFACESTSAIRTVASLNREENVFAEYCDSLIKPGRESAIASLKSGLFFSAAQGVTFLIN 1036
Query: 973 ALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIID 1032
AL WY +R G ++ ++ F + FG + + K + + + + +
Sbjct: 1037 ALTFWYGSTLMRKGEYNIVQFYTCFIAIVFGIQQAGQFFGYSADVTKAKAAAGEIKYLSE 1096
Query: 1033 RVPKIDPDDSSAVKPPNVY-GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVS 1091
PKID + K ++ +IE + V+F YP+R + VL +L V GQ VA VG S
Sbjct: 1097 SKPKIDTWSTEGKKVESLQSAAIEFRQVEFSYPTRRHIKVLRGLNLTVKPGQFVAFVGSS 1156
Query: 1092 GSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENII 1151
G GKST I LIERFYD G VL+DG +++ YN+ R + LV QEP ++ T+RENI+
Sbjct: 1157 GCGKSTTIGLIERFYDCDNGAVLVDGVNVRDYNINDYRKQIALVSQEPTLYQGTVRENIV 1216
Query: 1152 Y-ARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210
A + SE E+ EA + AN H FI LP+GY+T G +G L+ GQKQRIAIAR +++N
Sbjct: 1217 LGASKDVSEEEMIEACKKANIHEFILGLPNGYNTLCGQKGSSLSGGQKQRIAIARALIRN 1276
Query: 1211 APILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIV 1270
ILLLDEA+S+++S S +VVQEAL+ G +TT+ IAHR + ++ D I V +GG I
Sbjct: 1277 PKILLLDEATSALDSHSEKVVQEALNAASQG-RTTVAIAHRLSSIQDADCIFVFDGGVIA 1335
Query: 1271 EEGTHDSLLAKNGLYVRLM 1289
E GTH L+ + G Y L+
Sbjct: 1336 EAGTHAELVKQRGRYYELV 1354
|
May be a transmembrane transporter of the mating factor, namely P-factor or M-factor. Confers resistance to leptomycin B and to several other antifungal drugs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P34712|PGP1_CAEEL Multidrug resistance protein pgp-1 OS=Caenorhabditis elegans GN=pgp-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust.
Identities = 393/1271 (30%), Positives = 636/1271 (50%), Gaps = 122/1271 (9%)
Query: 42 GVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLI 101
G++AAG I V+C++ E+ +R +V+ +L Q++S+FDT ++G + +++ ++ +
Sbjct: 148 GMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-NHSGTLATKLFDNLERV 206
Query: 102 QSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAEN 161
+ +K+G ++ F +G +AF + WQ+ L+ L P G + A
Sbjct: 207 KEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIR 266
Query: 162 IQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFT 221
YA+A + E+ +S IRT+ + Y+T+++ + G+L L G+ G
Sbjct: 267 ETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAM 326
Query: 222 YGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAA 281
S AL ++G V + G+++T +V++ + L A + AA
Sbjct: 327 QASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAA 386
Query: 282 YRLYEMISRSS--STTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKA 339
+YE++ R +++ G + G+I NV+F+Y SRP++PIL G L V A +
Sbjct: 387 SGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQT 446
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSL 399
VALVG +G GKS+II L+ R+YD G++ +DG +++++ LE+LR + +V+QEPAL +
Sbjct: 447 VALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC 506
Query: 400 SIRDNIAYGRDA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458
+I +NI+ G++ T +++ A K+A+A FI +L GY T VG G L+ QK +++IA
Sbjct: 507 TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA 566
Query: 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518
RA++ NP ILLLDE T LD E+E VQ+ALD GR+TIIIA RLS IRNAD I
Sbjct: 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCK 626
Query: 519 EGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQ 578
G++ E+G H L+A LY +L+ + TF DS+A F
Sbjct: 627 NGQVVEVGDHRALMAQQGLYYDLVTAQ------------------TFTDAVDSAAEGKFS 668
Query: 579 EPSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRR 638
EN + ++ E + R
Sbjct: 669 R------------------------------------------ENSVARQTSEHE-GLSR 685
Query: 639 QDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPHSHSDD 698
Q S EM D+ + R ++ GS P+ D K ER SR
Sbjct: 686 QAS-EMD-------DIMNRVRSSTIGSITNGPV-----IDEKEERIGKDALSR------- 725
Query: 699 FPTKVREEESKHQKAPSF---WRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIV 755
K EE+ QK F + + + ++ +IG I+ +++ + +
Sbjct: 726 --LKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFA 783
Query: 756 TAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAM 815
+ H W L+ + + +FL F+ GI E +T +R +F +
Sbjct: 784 GNPADFLSQGHF------WALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNV 837
Query: 816 LRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875
L +G+FD +N++ +S RLA D +R A R S I +++ + + W+
Sbjct: 838 LSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQ 897
Query: 876 LALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKV 935
+AL+ +A LPI++ + G + + + +A+ N+ TV A +
Sbjct: 898 MALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTF 957
Query: 936 MELYRLQL----KKIFTKSFLHGMAIGFAFGFSQFLLFACN---ALLLWYTGKSVRDGYM 988
E + +L K+ ++F+ G++ G A +LL C L L T
Sbjct: 958 YENFCEKLDIPHKEAIKEAFIQGLSYGCASSV-LYLLNTCAYRMGLALIIT--------- 1007
Query: 989 DLPT-----ALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSS 1043
D PT L+ + +T L P K + +F ++ ++ KID S
Sbjct: 1008 DPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKID-SLSL 1066
Query: 1044 AVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIE 1103
A + +YG + KNV F YP RPE+ +L S V GQT+A+VG SG GKST+++L+E
Sbjct: 1067 AGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126
Query: 1104 RFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNAS--EAE 1161
RFYD + G++ +DG ++K N R+ + +V QEP +F +I ENIIY +S A+
Sbjct: 1127 RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQ 1186
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
V+EAAR+AN H+FI+ LP G++T VG RG L+ GQKQRIAIAR +++N ILLLDEA+S
Sbjct: 1187 VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246
Query: 1222 SIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
++++ES +VVQEALD G +T I+IAHR + + D I V++ G I+E+GTH L+++
Sbjct: 1247 ALDTESEKVVQEALDRAREG-RTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE 1305
Query: 1282 NGLYVRLMQPH 1292
G Y +L Q
Sbjct: 1306 KGAYYKLTQKQ 1316
|
Energy-dependent efflux pump responsible for decreased drug accumulation in multidrug-resistant cells. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/630 (40%), Positives = 409/630 (64%), Gaps = 13/630 (2%)
Query: 672 SPLLTSDPKNERSHSQTFSRPHSHSD--------DFPTKVREEESKHQKAPSFWRLAELS 723
SP++T + RS S SD +P E+ + +A SFWRLA+++
Sbjct: 634 SPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKLAFKDQANSFWRLAKMN 693
Query: 724 FAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGV 783
EW YA+LGS+G+ I GS + AYV+ +++ YY P+ + +++ ++K+C ++ +
Sbjct: 694 SPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQ-IDKYCYLLIGLSS 752
Query: 784 VTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATF 843
+V N LQH ++ I+GE +T+RVR M SA+L+NE+ WFD+EEN + ++ RLA DA
Sbjct: 753 AALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENESARIAARLALDANN 812
Query: 844 VRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSR 903
VR+A +R+S+ +Q++A ++VA G +L+WRLALV +A P++ + + QK+++ GFS
Sbjct: 813 VRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSG 872
Query: 904 GIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGF 963
++ H K + + +A+ N+ TV AF + K++ LY L+ + F G G +G
Sbjct: 873 DLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRCFWKGQIAGSGYGV 932
Query: 964 SQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKS 1023
+QF L+A AL LWY V+ G D ++ +MV + E LAP +K ++
Sbjct: 933 AQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGQA 992
Query: 1024 LISVFEIIDRVPKIDPDDSSAVKPPN-VYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGG 1082
+ SVFE++DR +I+PDD P+ + G +ELK++DF YPSRP++ + + SL+ G
Sbjct: 993 MRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDIQIFRDLSLRARAG 1052
Query: 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIF 1142
+T+A+VG SG GKS++ISLI+RFY+P +G+V++DG+D++ YNL+ +R H+ +V QEP +F
Sbjct: 1053 KTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKHIAIVPQEPCLF 1112
Query: 1143 STTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202
TTI ENI Y A+EAE+ +AA +A+AH FIS+LP GY T+VG RGV L+ GQKQRIA
Sbjct: 1113 GTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVGERGVQLSGGQKQRIA 1172
Query: 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIV 1262
IAR +++ A I+LLDEA+S++++ES R VQEALD G +T+I++AHR + +R+ I
Sbjct: 1173 IARALVRKAEIMLLDEATSALDAESERSVQEALDQACSG-RTSIVVAHRLSTIRNAHVIA 1231
Query: 1263 VLNGGRIVEEGTHDSLLAK--NGLYVRLMQ 1290
V++ G++ E+G+H LL +G+Y R++Q
Sbjct: 1232 VIDDGKVAEQGSHSHLLKNHPDGIYARMIQ 1261
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 516 bits (1329), Expect = e-145, Method: Compositional matrix adjust.
Identities = 277/645 (42%), Positives = 409/645 (63%), Gaps = 25/645 (3%)
Query: 665 SDPESPISPLL----TSDPKNERSHSQTFSRPHS--HSDDFP------TKVREEESKHQK 712
S+P+ S LL T+ + S ++T SRPHS +S + RE ++
Sbjct: 626 SNPDGAYSSLLRLQETASLQRNPSLNRTLSRPHSIKYSRELSRTRSSFCSERESVTRPDG 685
Query: 713 A-PS------FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERH 765
A PS RL + +W+Y V G+I A I GS PL A + + +YY +
Sbjct: 686 ADPSKKVKVTVGRLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQALVSYYSGWD-- 743
Query: 766 HLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDE 825
++E+ K ++ C V+T++ ++H FG MGE++T RVR MF A+L+NE+GWFDE
Sbjct: 744 ETQKEIKKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDE 803
Query: 826 EENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLP 885
+N++ L+ RL +DAT ++ +R +I +Q+ V+ + II +L WRL LV LAT P
Sbjct: 804 VDNTSSMLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYP 863
Query: 886 ILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKK 945
++ I++KL++ G+ + K + KA+++ ++V NI TV AFCA K++ELY +L +
Sbjct: 864 LVISGHISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLE 923
Query: 946 IFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATF 1005
SF G G +G SQF +F+ L LWY + G + +K +MV
Sbjct: 924 PSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTAL 983
Query: 1006 ALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPS 1065
A+ E LAP +LK + + SVFEI+DR +I + S + NV G+IELK V F YPS
Sbjct: 984 AMGETLALAPDLLKGNQMVASVFEILDRKTQIVGETSEELN--NVEGTIELKGVHFSYPS 1041
Query: 1066 RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL 1125
RP+V++ +F L V G+++A+VG SGSGKS++ISLI RFYDP AG+V+++G+D+K +L
Sbjct: 1042 RPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDL 1101
Query: 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTH 1185
+ LR H+GLVQQEP +F+TTI ENI+Y AS++EV E+A +ANAH FI+SLP GY T
Sbjct: 1102 KALRKHIGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTK 1161
Query: 1186 VGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTT 1245
VG RGV ++ GQ+QRIAIAR +LKN ILLLDEA+S+++ ES RVVQ+ALD L M N+TT
Sbjct: 1162 VGERGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRL-MANRTT 1220
Query: 1246 ILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL-LAKNGLYVRLM 1289
+++AHR + +++ D I VL+GG+IVE+G+H L L K+G Y +L+
Sbjct: 1221 VVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLI 1265
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/624 (42%), Positives = 402/624 (64%), Gaps = 17/624 (2%)
Query: 667 PESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAE 726
P P+S + P E ++T S H V + ++ Q + RL + +
Sbjct: 610 PSLPVS----TKPLPELPITETTSSIHQ-------SVNQPDTTKQAKVTVGRLYSMIRPD 658
Query: 727 WLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTV 786
W Y + G++G+ I GS PL A I + +YY E + EV + ++ C V+TV
Sbjct: 659 WKYGLCGTLGSFIAGSQMPLFALGIAQALVSYYMDWETT--QNEVKRISILFCCGSVITV 716
Query: 787 VANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRA 846
+ + ++H FGIMGE++T RVR+ MFSA+LRNE+GWFD+ +N++ L+ RL +DAT +R
Sbjct: 717 IVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLESDATLLRT 776
Query: 847 AFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQ 906
+R +I +++ V+ A II +L WRL LV LAT P++ I++K+++ G+ +
Sbjct: 777 IVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHISEKIFMQGYGGNLS 836
Query: 907 KMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQF 966
K + KA+++ +++ NI TVVAFCA KV++LY +L + +SF G G +G SQF
Sbjct: 837 KAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMAGILYGVSQF 896
Query: 967 LLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLIS 1026
+F+ L LWY + G + +K +MV + E LAP +LK + ++S
Sbjct: 897 FIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLLKGNQMVVS 956
Query: 1027 VFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVA 1086
VFE++DR ++ D + NV G+IELK V F YPSRP+V + S+F+L V G+++A
Sbjct: 957 VFELLDRRTQVVGDTGEELS--NVEGTIELKGVHFSYPSRPDVTIFSDFNLLVPSGKSMA 1014
Query: 1087 VVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTI 1146
+VG SGSGKS+++SL+ RFYDP AG +++DG+D+K L+ LR H+GLVQQEP +F+TTI
Sbjct: 1015 LVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQEPALFATTI 1074
Query: 1147 RENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206
ENI+Y + ASE+EV EAA++ANAH FISSLP GY T VG RG+ ++ GQ+QRIAIAR
Sbjct: 1075 YENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQRQRIAIARA 1134
Query: 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266
VLKN ILLLDEA+S+++ ES RVVQ+ALD L M ++TT+++AHR + +++ D I V+
Sbjct: 1135 VLKNPEILLLDEATSALDVESERVVQQALDRL-MRDRTTVVVAHRLSTIKNSDMISVIQD 1193
Query: 1267 GRIVEEGTHDSLLA-KNGLYVRLM 1289
G+I+E+G+H+ L+ KNG Y +L+
Sbjct: 1194 GKIIEQGSHNILVENKNGPYSKLI 1217
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust.
Identities = 253/573 (44%), Positives = 371/573 (64%), Gaps = 3/573 (0%)
Query: 717 WRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCL 776
W L +L+ EW YA+LGSIGA + G+ PL + I ++TA+Y P + ++ +V K +
Sbjct: 668 WELIKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFP-NVIKRDVEKVAI 726
Query: 777 IIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMR 836
I A G+VT LQH+++ +MGE++T RVR +FSA+L NE+GWFD +EN+ +L+
Sbjct: 727 IFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSI 786
Query: 837 LANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKL 896
LA DAT VR+A ++RLS +Q+ + + A+ + WR+A V A P+L +++ ++L
Sbjct: 787 LAADATLVRSALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQL 846
Query: 897 WLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMA 956
+L GF + + +A+ V +A+ NI TV A+ A ++ E + +L K +F+ G
Sbjct: 847 FLKGFGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHI 906
Query: 957 IGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPY 1016
GF +G SQFL F AL LWY + + ++K +MV F++ E L P
Sbjct: 907 SGFGYGLSQFLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPD 966
Query: 1017 ILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFS 1076
I+K ++L SVF ++ R KI PD ++ V G IE +NV F YP+RPE+ + N +
Sbjct: 967 IVKGTQALGSVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLN 1026
Query: 1077 LKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQ 1136
L+V+ G+++AVVG SGSGKST+I LI RFYDP G + +DG+D+K NLR LR L LVQ
Sbjct: 1027 LRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQ 1086
Query: 1137 QEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196
QEP +FSTTI ENI Y NASEAE+ EAA+ ANAH FI + GY TH G +GV L+ G
Sbjct: 1087 QEPALFSTTIYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGG 1146
Query: 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR 1256
QKQR+AIAR VLK+ +LLLDEA+S++++ S ++VQEALD L+ G +TT+L+AHR + +R
Sbjct: 1147 QKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKG-RTTVLVAHRLSTIR 1205
Query: 1257 HVDNIVVLNGGRIVEEGTHDSLLA-KNGLYVRL 1288
D + VL+ GR+VE+G+H L++ NG Y +L
Sbjct: 1206 KADTVAVLHKGRVVEKGSHRELVSIPNGFYKQL 1238
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/600 (43%), Positives = 395/600 (65%), Gaps = 11/600 (1%)
Query: 706 EESKHQKAPS--FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEE 763
E + +AP F+RL +L+ EW Y+++G++G+ + G P A V+ ++ +Y +
Sbjct: 661 ETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTD- 719
Query: 764 RHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWF 823
+ + ++ I G+ V A +QH++F IMGE +T RVRRMM SA+LRNEVGWF
Sbjct: 720 YDSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWF 779
Query: 824 DEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALAT 883
DE+E+++ ++ RLA DA V++A + R+S+ +Q+ +++ + I+ ++EWR++L+ L T
Sbjct: 780 DEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGT 839
Query: 884 LPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQL 943
P+L L+ AQ+L L GF+ K H K S++ + V NI TV AF A +K++ L+ +L
Sbjct: 840 FPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHEL 899
Query: 944 KKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFA 1003
+ +S GF FG SQ L+ AL+LWY V G +K ++V
Sbjct: 900 RVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVIT 959
Query: 1004 TFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCY 1063
++ E LAP I++ +++ SVF ++DR +IDPDD+ A + G IE ++VDF Y
Sbjct: 960 ANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAY 1019
Query: 1064 PSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY 1123
PSRP+V+V +F+L++ G + A+VG SGSGKS++I++IERFYDP+AG+V++DG+D++
Sbjct: 1020 PSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRL 1079
Query: 1124 NLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYD 1183
NL+ LR +GLVQQEP +F+ TI +NI Y + A+E+EV +AAR ANAH FIS LP GY
Sbjct: 1080 NLKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYK 1139
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK 1243
T VG RGV L+ GQKQRIAIAR VLKN +LLLDEA+S++++ES V+QEAL+ L+ G +
Sbjct: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRG-R 1198
Query: 1244 TTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQPHYGKGLRQHRL 1302
TT+++AHR + +R VD I V+ GRIVE+G+H L+++ G Y RL+Q L+ HR+
Sbjct: 1199 TTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQ------LQTHRI 1252
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1303 | ||||||
| 224112851 | 1397 | multidrug/pheromone exporter, MDR family | 0.976 | 0.911 | 0.910 | 0.0 | |
| 356576843 | 1399 | PREDICTED: ABC transporter B family memb | 0.978 | 0.911 | 0.900 | 0.0 | |
| 449464190 | 1401 | PREDICTED: ABC transporter B family memb | 0.990 | 0.920 | 0.898 | 0.0 | |
| 356536496 | 1399 | PREDICTED: ABC transporter B family memb | 0.978 | 0.911 | 0.898 | 0.0 | |
| 359486840 | 1410 | PREDICTED: ABC transporter B family memb | 0.977 | 0.903 | 0.897 | 0.0 | |
| 356499669 | 1402 | PREDICTED: ABC transporter B family memb | 0.977 | 0.908 | 0.901 | 0.0 | |
| 356568961 | 1402 | PREDICTED: ABC transporter B family memb | 0.977 | 0.908 | 0.897 | 0.0 | |
| 224098270 | 1398 | multidrug/pheromone exporter, MDR family | 0.975 | 0.909 | 0.903 | 0.0 | |
| 297820292 | 1408 | P-glycoprotein 20 [Arabidopsis lyrata su | 0.976 | 0.904 | 0.874 | 0.0 | |
| 15233244 | 1408 | ABC transporter B family member 20 [Arab | 0.975 | 0.902 | 0.870 | 0.0 |
| >gi|224112851|ref|XP_002316309.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222865349|gb|EEF02480.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2371 bits (6145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1163/1277 (91%), Positives = 1224/1277 (95%), Gaps = 4/1277 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
+ LA++IVY+A GVFAAGWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 123 FTNLAMHIVYLAVGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 182
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL I FVNCWQIALITL TGPFIVAAG
Sbjct: 183 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFVNCWQIALITLATGPFIVAAG 242
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAE+IQDAYAEAASIAEQA+SY RTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 243 GISNIFLHRLAESIQDAYAEAASIAEQALSYTRTLYAFTNETLAKYSYATSLQATLRYGI 302
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLWVGRFLVT +KAHGGEIVTALFAVILSGLGLNQAA
Sbjct: 303 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTDHKAHGGEIVTALFAVILSGLGLNQAA 362
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMISRSSST N DG++L +V GNIEFRNVYFSYLSRPEIPILS
Sbjct: 363 TNFYSFDQGRIAAYRLFEMISRSSSTVNQDGDSLVAVQGNIEFRNVYFSYLSRPEIPILS 422
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE LRSQ+G
Sbjct: 423 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLESLRSQVG 482
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSI DNI+YGRDAT+DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT
Sbjct: 483 LVTQEPALLSLSIIDNISYGRDATMDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 542
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNP+ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI
Sbjct: 543 EEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 602
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
RNADYIAVM+EG+L EMGTHDELL LYAELLKCEEAAKLPRRMPVRNY ET+ FQ+E
Sbjct: 603 RNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLKCEEAAKLPRRMPVRNYTETAAFQVE 662
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQRV-GIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
KDSS HS+QEPSSPKM KSPSLQRV GI+RP DG F+SQESPKVLSPP EKM+ENG+P+
Sbjct: 663 KDSSTGHSYQEPSSPKMAKSPSLQRVPGIFRPPDGMFNSQESPKVLSPPPEKMIENGLPL 722
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D ADKEPSIRRQDSFEMRLPELPKIDV S++R TSNGS PESP+SPLLTSDPKNERSHSQ
Sbjct: 723 DGADKEPSIRRQDSFEMRLPELPKIDVQSAHRHTSNGSGPESPVSPLLTSDPKNERSHSQ 782
Query: 688 TFSRPHSHSDDFPTKVRE-EESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRPHSHSDD P KV+E + KHQK P FWRLAELS AEWLYAVLGSIGAAIFGSFNPL
Sbjct: 783 TFSRPHSHSDDVPIKVKEARDVKHQKEPPFWRLAELSLAEWLYAVLGSIGAAIFGSFNPL 842
Query: 747 LAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTER 806
LAYVI LIVTAYY+ E HHLR++V++WCL+IA MG+VTVVANFLQHFYFGIMGEKMTER
Sbjct: 843 LAYVISLIVTAYYRQE--HHLRQDVDRWCLMIAIMGIVTVVANFLQHFYFGIMGEKMTER 900
Query: 807 VRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 866
VRRMMFSAMLRNEVGWFDEE+NSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV
Sbjct: 901 VRRMMFSAMLRNEVGWFDEEDNSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 960
Query: 867 IIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTV 926
+IGMLL+WRLALVALATLP+L++SAIAQKLWLAGFSRGIQ+MHRKASLVLEDAVRNIYTV
Sbjct: 961 VIGMLLQWRLALVALATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTV 1020
Query: 927 VAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDG 986
VAFCAGNKVMELYRLQLKKIF +SF+HGMAIGF FGFSQFLLFACNALLLWYT S ++
Sbjct: 1021 VAFCAGNKVMELYRLQLKKIFKQSFVHGMAIGFGFGFSQFLLFACNALLLWYTAYSEKNL 1080
Query: 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVK 1046
++DL TALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDR PKIDPDD+SA+K
Sbjct: 1081 HVDLHTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDREPKIDPDDNSALK 1140
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
PPNVYGSIELKNVDFCYP+RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY
Sbjct: 1141 PPNVYGSIELKNVDFCYPTRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1200
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTI+ENIIYARHNASEAE+KEAA
Sbjct: 1201 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIKENIIYARHNASEAEMKEAA 1260
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE
Sbjct: 1261 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1320
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286
SSRVVQEALDTL+MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTH+SL+AKNGLYV
Sbjct: 1321 SSRVVQEALDTLVMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHNSLMAKNGLYV 1380
Query: 1287 RLMQPHYGKGLRQHRLV 1303
RLMQPH+GKGLRQHRL+
Sbjct: 1381 RLMQPHFGKGLRQHRLI 1397
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576843|ref|XP_003556539.1| PREDICTED: ABC transporter B family member 20-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2358 bits (6111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1150/1277 (90%), Positives = 1216/1277 (95%), Gaps = 2/1277 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
ELAL IVYIAGGVFAAGWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 123 FKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 182
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL IAF+NCWQIALITL TGPFIVAAG
Sbjct: 183 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAG 242
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 243 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 302
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLWVGR L+ H KAHGGEI+TALFAVILSGLGLNQAA
Sbjct: 303 LISLVQGLGLGFTYGLAICSCALQLWVGRLLIIHGKAHGGEIITALFAVILSGLGLNQAA 362
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMISRSSS+ N+DG+ SV GNIEFRNVYFSYLSRPEIPILS
Sbjct: 363 TNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSAPASVQGNIEFRNVYFSYLSRPEIPILS 422
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKK VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN+KLEWLR+QIG
Sbjct: 423 GFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNMKLEWLRNQIG 482
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIRDNIAYGRD T+DQIEEAAKIAHAHTFISSL+KGY+TQVGRAGLALT
Sbjct: 483 LVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALT 542
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER+VQEALDLLMLGRSTIIIARRLSLI
Sbjct: 543 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLI 602
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
+NADYIAVM++G+L EMGTHDELL LYAELL+CEEA KLP+RMPVRNYKET+TFQIE
Sbjct: 603 KNADYIAVMEDGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETATFQIE 662
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQRV-GIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
KDSS SHSF+EPSSPKM+KSPSLQRV I+RP+DG F+SQESPK+ SPPSEK++ENG +
Sbjct: 663 KDSSESHSFKEPSSPKMIKSPSLQRVSAIFRPSDGFFNSQESPKIRSPPSEKLMENGQSL 722
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D++DKEPSI+RQDSFEMRLPELPKIDV +RQTSNGSDPESPISPLLTSDPKNERSHSQ
Sbjct: 723 DSSDKEPSIKRQDSFEMRLPELPKIDVQCVHRQTSNGSDPESPISPLLTSDPKNERSHSQ 782
Query: 688 TFSRPHSHSDDFPTKVRE-EESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRP HSDD K+ E ++++H+K PS WRLAELSFAEWLYAVLGSIGAAIFGSFNPL
Sbjct: 783 TFSRPDCHSDDLLVKMSETKDARHRKQPSIWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 842
Query: 747 LAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTER 806
LAYVIGL+VT YY+ +E HL+ E+NKWCLIIACMG+VTVVANFLQHFYFGIMGEKMTER
Sbjct: 843 LAYVIGLVVTDYYRIDEAQHLQGEINKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTER 902
Query: 807 VRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 866
VRRMMFSAMLRNE GWFDEEENSAD LSMRLANDATFVRAAFSNRLSIFIQDSAAVIVA
Sbjct: 903 VRRMMFSAMLRNETGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAF 962
Query: 867 IIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTV 926
+IG+LL WRLALVALATLP+L +SA+AQKLWLAGFS+GIQ+MHRKASLVLEDAVRNIYTV
Sbjct: 963 LIGVLLHWRLALVALATLPVLCVSALAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTV 1022
Query: 927 VAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDG 986
VAFCAGNKVMELY+LQL KIF +SFLHG+AIGF FGFSQFLLFACNALLLWYT V
Sbjct: 1023 VAFCAGNKVMELYQLQLNKIFKQSFLHGVAIGFGFGFSQFLLFACNALLLWYTALCVNKS 1082
Query: 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVK 1046
Y+DLPTALKEY+VFSFATFALVEPFGLAPYILKRRKSL+SVFEIIDRVPKIDPDDSSA+K
Sbjct: 1083 YVDLPTALKEYIVFSFATFALVEPFGLAPYILKRRKSLMSVFEIIDRVPKIDPDDSSALK 1142
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
PPNVYGSIELKN+DFCYPSRPEVLVLSNFSLKVNGGQT+AVVGVSGSGKSTIISLIERFY
Sbjct: 1143 PPNVYGSIELKNIDFCYPSRPEVLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFY 1202
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
DPVAGQVLLDGRDLK YNLRWLR+HLGLVQQEPIIFSTTIRENIIYARHNASEAE+KEAA
Sbjct: 1203 DPVAGQVLLDGRDLKQYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAA 1262
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE
Sbjct: 1263 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1322
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286
SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL+AKNGLYV
Sbjct: 1323 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYV 1382
Query: 1287 RLMQPHYGKGLRQHRLV 1303
RLMQPH+GK LRQHRLV
Sbjct: 1383 RLMQPHFGKALRQHRLV 1399
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464190|ref|XP_004149812.1| PREDICTED: ABC transporter B family member 20-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2353 bits (6098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1166/1297 (89%), Positives = 1227/1297 (94%), Gaps = 7/1297 (0%)
Query: 14 KFVDCLVVAFGVEVW---LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYV 70
K V L V GV+ ELAL +VYIA GVF AGWIEVSCWILTGERQTAVIRSRYV
Sbjct: 105 KIVHVLRVPTGVDEQYQRFRELALSVVYIAIGVFIAGWIEVSCWILTGERQTAVIRSRYV 164
Query: 71 QVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNC 130
QVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL I F+NC
Sbjct: 165 QVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFINC 224
Query: 131 WQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190
WQIALITL TGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSY+RTLYAFTNET
Sbjct: 225 WQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYVRTLYAFTNET 284
Query: 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEI 250
LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTH KAHGGEI
Sbjct: 285 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHQKAHGGEI 344
Query: 251 VTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIE 310
+TALFAVILSGLGLNQAATNFYSFDQGRIAAYRL+EMISRSSS++N DG T S+ GNIE
Sbjct: 345 ITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSSNQDGVTPSSIQGNIE 404
Query: 311 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 370
FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL
Sbjct: 405 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 464
Query: 371 DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFIS 430
DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR+ATLDQIEEAAKIAHAHTFIS
Sbjct: 465 DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRNATLDQIEEAAKIAHAHTFIS 524
Query: 431 SLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD 490
SLEKGY+TQVGRAG+ L EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE+ VQ ALD
Sbjct: 525 SLEKGYDTQVGRAGIELMEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAEKTVQAALD 584
Query: 491 LLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKL 550
LLMLGRSTIIIARRLSLIRNADYIAVM+EG+L EMGTHDELL+ LY ELLKCEEAAKL
Sbjct: 585 LLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLSLDGLYTELLKCEEAAKL 644
Query: 551 PRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRV-GIYRPTDGAFD-SQE 608
PRRMPVRNYK++STFQIEKDSSASHS QEPSSPKM+KSPSLQRV G+ RPTDG ++ S E
Sbjct: 645 PRRMPVRNYKDSSTFQIEKDSSASHSVQEPSSPKMMKSPSLQRVSGVIRPTDGVYNNSHE 704
Query: 609 SPKVLSPPSEKMLENGMPMDAA-DKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDP 667
SPK SPP EKMLENG +D + DKEPSIRRQDSFEMRLPELPKIDV +++RQTSNGSDP
Sbjct: 705 SPKAPSPPPEKMLENGQMLDTSVDKEPSIRRQDSFEMRLPELPKIDVQAAHRQTSNGSDP 764
Query: 668 ESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREE-ESKHQKAPSFWRLAELSFAE 726
ESP+SPLLTSDPK+ERSHSQTFSR HS SDDF K +EE ++KH+K+PSFWRLAELSFAE
Sbjct: 765 ESPVSPLLTSDPKSERSHSQTFSRIHSQSDDFRMKTKEEKDTKHKKSPSFWRLAELSFAE 824
Query: 727 WLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTV 786
WLYAVLGS+GAAIFGSFNPLLAYVI LI+TAYYK +E H +R EV+KWCLIIACMG VTV
Sbjct: 825 WLYAVLGSLGAAIFGSFNPLLAYVIALIITAYYKRDEGHSIRHEVDKWCLIIACMGFVTV 884
Query: 787 VANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRA 846
+ANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRA
Sbjct: 885 IANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRA 944
Query: 847 AFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQ 906
FSNRLSIFIQDSAAVIVA++IGMLL+WRLALVALATLP+L++SA+AQKLWLAGFSRGIQ
Sbjct: 945 TFSNRLSIFIQDSAAVIVALLIGMLLQWRLALVALATLPVLTISAVAQKLWLAGFSRGIQ 1004
Query: 907 KMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQF 966
+MHRKASLVLEDAVRNIYTVVAFCAGNKV+ELYRLQLKKIF +SFLHGMAIGFAFGFSQF
Sbjct: 1005 EMHRKASLVLEDAVRNIYTVVAFCAGNKVVELYRLQLKKIFKQSFLHGMAIGFAFGFSQF 1064
Query: 967 LLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLIS 1026
LLFACNALLLWYT SV++ MDL +ALK YMVFSFATFALVEPFGLAPYILKRRKSLIS
Sbjct: 1065 LLFACNALLLWYTAYSVKNKIMDLSSALKVYMVFSFATFALVEPFGLAPYILKRRKSLIS 1124
Query: 1027 VFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVA 1086
VFEIIDR+PKIDPDD+SA+KPPNVYGSIELKNVDFCYP+RPEVLVLSNFSLKVNGGQTVA
Sbjct: 1125 VFEIIDRLPKIDPDDNSALKPPNVYGSIELKNVDFCYPTRPEVLVLSNFSLKVNGGQTVA 1184
Query: 1087 VVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTI 1146
VVGVSGSGKSTIISLIERFYDPVAGQV+LD RDLK YNLRWLRNHLGLVQQEPIIFSTTI
Sbjct: 1185 VVGVSGSGKSTIISLIERFYDPVAGQVMLDSRDLKTYNLRWLRNHLGLVQQEPIIFSTTI 1244
Query: 1147 RENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206
RENIIYARHNASEAE+KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV
Sbjct: 1245 RENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1304
Query: 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266
VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG
Sbjct: 1305 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1364
Query: 1267 GRIVEEGTHDSLLAKNGLYVRLMQPHYGKGLRQHRLV 1303
GRIVEEGTHDSL+AKNGLYVRLMQPH+GKGLRQHRLV
Sbjct: 1365 GRIVEEGTHDSLVAKNGLYVRLMQPHFGKGLRQHRLV 1401
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536496|ref|XP_003536773.1| PREDICTED: ABC transporter B family member 20-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2350 bits (6089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1147/1277 (89%), Positives = 1213/1277 (94%), Gaps = 2/1277 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
ELAL IVYIAGGVFAAGWIEVSCWILTGERQTAVIRS YVQVLLNQDMSFFDTYGNNG
Sbjct: 123 FKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNG 182
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL IAF+NCWQIALITL TGPFIVAAG
Sbjct: 183 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAG 242
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAENIQDAYAEAASIAEQAVSY+RTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 243 GISNIFLHRLAENIQDAYAEAASIAEQAVSYVRTLYAFTNETLAKYSYATSLQATLRYGI 302
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLWVGR L+ H KAHGGEI+TALFAVILSGLGLNQAA
Sbjct: 303 LISLVQGLGLGFTYGLAICSCALQLWVGRLLIIHGKAHGGEIITALFAVILSGLGLNQAA 362
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMISRSSS+ N+DG+ SV GNIEFRNVYFSYLSRPEIPILS
Sbjct: 363 TNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSAPASVQGNIEFRNVYFSYLSRPEIPILS 422
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKK VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN+KLEWLRSQIG
Sbjct: 423 GFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNMKLEWLRSQIG 482
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIRDNIAYGRD T+DQIEEAAKIAHAHTFISSL+KGY+TQVGRAGLALT
Sbjct: 483 LVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALT 542
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER+VQEALDLLMLGRSTIIIARRLSLI
Sbjct: 543 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLI 602
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
+ ADYIAVM++G+L EMGTHDELL LYAELL+CEEA KLP+RMPVRNYKET+TFQIE
Sbjct: 603 KKADYIAVMEDGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETATFQIE 662
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQRV-GIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
KDSS S+SF+EPSSPKM+KSPSLQRV I+RP+DG F+SQESPKV SPPSEK++ENG +
Sbjct: 663 KDSSESNSFKEPSSPKMIKSPSLQRVSAIFRPSDGFFNSQESPKVRSPPSEKLIENGQSL 722
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D++DKEPSI+RQDSFEMRLPELPKIDV +RQTSNGSDPESP+SPLL SDPKNERSHSQ
Sbjct: 723 DSSDKEPSIKRQDSFEMRLPELPKIDVQCVHRQTSNGSDPESPVSPLLMSDPKNERSHSQ 782
Query: 688 TFSRPHSHSDDFPTKVRE-EESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRP SHSDD K+ E ++++H+K PS WRLAELSFAEWLYAVLGSIGAAIFGSFNPL
Sbjct: 783 TFSRPDSHSDDLSVKMSETKDARHRKQPSVWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 842
Query: 747 LAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTER 806
LAYVIGL+VT YY+ +E HL+ E+NKWCLIIACMG+VTVVANFLQHFYFGIMGEKMTER
Sbjct: 843 LAYVIGLVVTDYYRIDEAQHLQGEINKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTER 902
Query: 807 VRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 866
VRRMMFSAMLRNE GWFDEEENSAD LSMRLANDATFVRAAFSNRLSIFIQDSAAVIVA
Sbjct: 903 VRRMMFSAMLRNETGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAF 962
Query: 867 IIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTV 926
+IG+LL WRLALVALATLP+L +SA+AQKLWLAGFS+GIQ+MHRKASLVLEDAVRNIYTV
Sbjct: 963 LIGVLLHWRLALVALATLPVLCVSALAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTV 1022
Query: 927 VAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDG 986
VAFCAGNKVMELY+LQL KIF +SF HG+AIGFAFGFSQFLLFACNALLLWYT V
Sbjct: 1023 VAFCAGNKVMELYQLQLNKIFKQSFFHGVAIGFAFGFSQFLLFACNALLLWYTAICVNKS 1082
Query: 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVK 1046
Y+DLPTALKEY+VFSFATFALVEPFGLAPYILKRRKSL+SVFEIIDRVPKIDPDDSSA+K
Sbjct: 1083 YVDLPTALKEYIVFSFATFALVEPFGLAPYILKRRKSLMSVFEIIDRVPKIDPDDSSALK 1142
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
PPNVYGSIELKN+DFCYPSRPEVLVLSNFSLKVNGGQT+AVVGVSGSGKSTIISLIERFY
Sbjct: 1143 PPNVYGSIELKNIDFCYPSRPEVLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFY 1202
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
DPVAGQVLLDGRDLK YNLRWLR+HLGLVQQEPIIFSTTIRENIIYARHNASEAE+KEAA
Sbjct: 1203 DPVAGQVLLDGRDLKQYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAA 1262
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE
Sbjct: 1263 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1322
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286
SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT DSL+AKNGLYV
Sbjct: 1323 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTQDSLVAKNGLYV 1382
Query: 1287 RLMQPHYGKGLRQHRLV 1303
RLMQPH+GK LRQHRLV
Sbjct: 1383 RLMQPHFGKALRQHRLV 1399
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486840|ref|XP_002284223.2| PREDICTED: ABC transporter B family member 20-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2349 bits (6088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1156/1288 (89%), Positives = 1222/1288 (94%), Gaps = 14/1288 (1%)
Query: 30 SELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGD 89
+ELA +V+IA GVF AGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGD
Sbjct: 123 TELASTMVFIAVGVFVAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGD 182
Query: 90 IVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGG 149
IVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL I F+NCW+IALITL TGPFIVAAGG
Sbjct: 183 IVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLIIGFINCWEIALITLATGPFIVAAGG 242
Query: 150 ISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGIL 209
ISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGIL
Sbjct: 243 ISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGIL 302
Query: 210 ISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAAT 269
ISLVQGLGLGFTYGLAICSCALQLWVGRFLV H +AHGGEI+TALF+VILSGLGLNQAAT
Sbjct: 303 ISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGRAHGGEIITALFSVILSGLGLNQAAT 362
Query: 270 NFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSG 329
NFYSFDQGRIAAYRL+EMISRS+S N+DGNTLPSV GNIEFRNVYFSYLSRPEIPILSG
Sbjct: 363 NFYSFDQGRIAAYRLFEMISRSTSVVNHDGNTLPSVQGNIEFRNVYFSYLSRPEIPILSG 422
Query: 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389
FYL+VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL
Sbjct: 423 FYLSVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 482
Query: 390 VTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
VTQEPALLSLSIRDNIAYGR AT DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT
Sbjct: 483 VTQEPALLSLSIRDNIAYGRPSATSDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 542
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLS+ARAVL NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI
Sbjct: 543 EEQKIKLSVARAVLSNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 602
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
RNADYIAVM+EG+L EMGTHDELL LYAELLKCEEAAKLPRRMPVRNYKET+TFQIE
Sbjct: 603 RNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLKCEEAAKLPRRMPVRNYKETATFQIE 662
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQRV-GI--YRPTDGAFDSQESPKVLSPPSEKMLENGM 625
KDSSASH FQEPSSPKM+KSPSLQRV GI +RP+D AF+SQESPK SPP E+M+ENG+
Sbjct: 663 KDSSASHCFQEPSSPKMVKSPSLQRVPGIHGFRPSDLAFNSQESPKTRSPPPEQMMENGV 722
Query: 626 PMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSH 685
P+D+ DKEPSI+RQDSFEMRLPELPKIDV +++QTSN SDPESP+SPLLTSDPKNERSH
Sbjct: 723 PLDSTDKEPSIKRQDSFEMRLPELPKIDVQVAHQQTSNASDPESPVSPLLTSDPKNERSH 782
Query: 686 SQTFSRPHSHSDDFPTKVRE-EESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFN 744
SQTFSRPHS DD P + ++ ++ +H+++PSFWRL +LS AEWLYAVLGSIGAAIFGSFN
Sbjct: 783 SQTFSRPHSQFDDVPMRTKDAKDVRHRESPSFWRLVDLSLAEWLYAVLGSIGAAIFGSFN 842
Query: 745 PLLAYVIGLIVTAYYKP--------EERHHLREEVNKWCLIIACMGVVTVVANFLQHFYF 796
PLLAYVI LIVTAYY+ ++R HLR+EV+KWCLIIACMGVVTVVANFLQHFYF
Sbjct: 843 PLLAYVIALIVTAYYRGGEGGEHSHDDRRHLRQEVDKWCLIIACMGVVTVVANFLQHFYF 902
Query: 797 GIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFI 856
GIMGEKMTERVRRMMFSAMLRNEVGWFDEE+NSADTLSMRLANDATFVRAAFSNRLSIFI
Sbjct: 903 GIMGEKMTERVRRMMFSAMLRNEVGWFDEEDNSADTLSMRLANDATFVRAAFSNRLSIFI 962
Query: 857 QDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVL 916
QDSAAVIVAV+IGMLL WRLALVALATLPIL++SA AQKLWLAGFSRGIQ+MHRKASLVL
Sbjct: 963 QDSAAVIVAVLIGMLLGWRLALVALATLPILTVSAFAQKLWLAGFSRGIQEMHRKASLVL 1022
Query: 917 EDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLL 976
EDAVRNIYTVVAFCAGNKVMELYR QL+KIF +SF HGMAIGFAFGFSQFLLFACNALLL
Sbjct: 1023 EDAVRNIYTVVAFCAGNKVMELYRRQLRKIFKQSFFHGMAIGFAFGFSQFLLFACNALLL 1082
Query: 977 WYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPK 1036
WYT SV++ YMD+PTALKEYMVFSFATFALVEPFGLAPYILKRRKSL SVFEIIDRVP
Sbjct: 1083 WYTAVSVKNQYMDMPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLTSVFEIIDRVPN 1142
Query: 1037 IDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKS 1096
IDPDD+SA+KPPNV+G+IELKNVDFCYP+RPEVLVLSNFSLKV+GGQTVAVVGVSGSGKS
Sbjct: 1143 IDPDDNSAMKPPNVFGTIELKNVDFCYPTRPEVLVLSNFSLKVSGGQTVAVVGVSGSGKS 1202
Query: 1097 TIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN 1156
TIISLIERFYDPVAGQV LDGRDLK YNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN
Sbjct: 1203 TIISLIERFYDPVAGQVSLDGRDLKSYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN 1262
Query: 1157 ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLL 1216
ASEAE+KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLL
Sbjct: 1263 ASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLL 1322
Query: 1217 DEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHD 1276
DEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRI+EEG+HD
Sbjct: 1323 DEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIMEEGSHD 1382
Query: 1277 SLLAKNGLYVRLMQPHYGKGLRQ-HRLV 1303
SL+AKNGLYVRLMQPH+GKGLRQ HRLV
Sbjct: 1383 SLVAKNGLYVRLMQPHFGKGLRQHHRLV 1410
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499669|ref|XP_003518659.1| PREDICTED: ABC transporter B family member 20-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2344 bits (6075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1151/1277 (90%), Positives = 1208/1277 (94%), Gaps = 3/1277 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
+ELAL IVYIA GVF AGWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 127 FTELALTIVYIAAGVFVAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 186
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL I VNCWQIALITL TGPFIVAAG
Sbjct: 187 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLVNCWQIALITLATGPFIVAAG 246
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAF+NETLAKYSYATSLQATLRYGI
Sbjct: 247 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFSNETLAKYSYATSLQATLRYGI 306
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLWVGRFLV H KAHGGEI+TALFAVILSGLGLNQAA
Sbjct: 307 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAA 366
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMISRSSS+ N+DG + SV GNIEFRNVYFSYLSRPEIPILS
Sbjct: 367 TNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTSPDSVQGNIEFRNVYFSYLSRPEIPILS 426
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG
Sbjct: 427 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 486
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIRDNIAYGRDAT+DQIEEAAKIAHAHTFISSLEKGY+TQVGRAGL+LT
Sbjct: 487 LVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAHAHTFISSLEKGYDTQVGRAGLSLT 546
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ ALDLLMLGRSTIIIARRLSLI
Sbjct: 547 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTIIIARRLSLI 606
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
+NADYIAVM+EG+L EMGTHDELLA LYAELL+CEEAAKLP+RMPVRNYKETS FQIE
Sbjct: 607 KNADYIAVMEEGQLVEMGTHDELLALDGLYAELLRCEEAAKLPKRMPVRNYKETSAFQIE 666
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQRV-GIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
KDSS SHSF+EPSSPKM+KSPSLQRV RP DGAF+ ESPKV SPPSEKMLENG+ +
Sbjct: 667 KDSS-SHSFKEPSSPKMIKSPSLQRVSNASRPPDGAFNLLESPKVQSPPSEKMLENGLAL 725
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
DAADKEPSIRRQDSFEMRLPELPKIDVHS +R SN SDPESPISPLLTSDPK+ERSHSQ
Sbjct: 726 DAADKEPSIRRQDSFEMRLPELPKIDVHSVHRHMSNESDPESPISPLLTSDPKSERSHSQ 785
Query: 688 TFSRPHSHSDDFPTKVREEE-SKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRP SHSDD K+RE + ++H+K PS +LAELSF EWLYAVLGSIGAAIFGSFNPL
Sbjct: 786 TFSRPLSHSDDVSVKMRETKGARHRKPPSLQKLAELSFTEWLYAVLGSIGAAIFGSFNPL 845
Query: 747 LAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTER 806
LAYVIGL+VTAYY+ ++ HHL EV++WCLII CMG+VTVVANFLQHFYFGIMGEKMTER
Sbjct: 846 LAYVIGLVVTAYYRIDDPHHLEREVDRWCLIIGCMGIVTVVANFLQHFYFGIMGEKMTER 905
Query: 807 VRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 866
VRRMMFSAMLRNEVGWFD+EENSAD LSMRLANDATFVRAAFSNRLSIFIQDSAAVIV +
Sbjct: 906 VRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGL 965
Query: 867 IIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTV 926
+IG LL WRLALVA AT PIL +SAIAQK WLAGFSRGIQ+MHRKASLVLEDAVRNIYTV
Sbjct: 966 LIGALLHWRLALVAFATFPILCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTV 1025
Query: 927 VAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDG 986
VAFCAGNKVMELYRLQLKKIF +SFLHGMAIGFAFGFSQFLLFACNALLLWYT ++ G
Sbjct: 1026 VAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRG 1085
Query: 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVK 1046
YMD PTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVF+IIDRVP IDPDDSSA+K
Sbjct: 1086 YMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFDIIDRVPIIDPDDSSALK 1145
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
PPNVYGS+ELKNVDFCYPSRPEVLVLSNFSLKV GGQTVA+VGVSGSGKSTIISLIERFY
Sbjct: 1146 PPNVYGSLELKNVDFCYPSRPEVLVLSNFSLKVTGGQTVAIVGVSGSGKSTIISLIERFY 1205
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
DPVAGQV LDGRDLK YNLRWLR+HLGLVQQEPIIFSTTIRENIIYARHNA+EAE+KEAA
Sbjct: 1206 DPVAGQVFLDGRDLKQYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNATEAEMKEAA 1265
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS+IESE
Sbjct: 1266 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSAIESE 1325
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286
SSRVVQEA+DTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG+HD+L+AKNGLYV
Sbjct: 1326 SSRVVQEAIDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDTLVAKNGLYV 1385
Query: 1287 RLMQPHYGKGLRQHRLV 1303
RLMQPH+GK LRQHRLV
Sbjct: 1386 RLMQPHFGKALRQHRLV 1402
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568961|ref|XP_003552676.1| PREDICTED: ABC transporter B family member 20-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2333 bits (6047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1146/1277 (89%), Positives = 1204/1277 (94%), Gaps = 3/1277 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
+ELAL IVYIA GVF AGWIEVSCWILTGERQTAVIRS YVQVLLNQDMSFFDTYGNNG
Sbjct: 127 FTELALTIVYIAAGVFVAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNG 186
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL I VNCWQIALITL TGPFIVAAG
Sbjct: 187 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLVNCWQIALITLATGPFIVAAG 246
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAF+NETLAKYSYATSLQATLRYGI
Sbjct: 247 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFSNETLAKYSYATSLQATLRYGI 306
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLWVGRFLV H KAHGGEI+TALFAVILSGLGLNQAA
Sbjct: 307 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAA 366
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMISRSSS+ N+DG + SV GNIEFRNVYFSYLSRPEIPILS
Sbjct: 367 TNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTSPDSVLGNIEFRNVYFSYLSRPEIPILS 426
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG
Sbjct: 427 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 486
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSI DNIAYGRDAT+DQIEEAAKIAHAHTFISSLEKGY+TQVGRA LALT
Sbjct: 487 LVTQEPALLSLSITDNIAYGRDATMDQIEEAAKIAHAHTFISSLEKGYDTQVGRACLALT 546
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ ALDLLMLGRSTIIIARRLSLI
Sbjct: 547 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTIIIARRLSLI 606
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
+NADYIAVM+EG+L EMGTHDELL LYAEL +CEEAAKLP+RMPVRNYKETS FQIE
Sbjct: 607 KNADYIAVMEEGQLVEMGTHDELLTLDGLYAELHRCEEAAKLPKRMPVRNYKETSAFQIE 666
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQRV-GIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
KDSS SHSF+EPSSPKM+KSPSLQRV + RP DG F+ ESP+V SPP EKMLENG+ +
Sbjct: 667 KDSS-SHSFKEPSSPKMMKSPSLQRVSNVSRPPDGVFNLLESPQVRSPPPEKMLENGLAL 725
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D ADKEPSIRRQDSFEMRLPELPKIDVHS R SN SDPESPISPLLTSDPK+ERSHSQ
Sbjct: 726 DVADKEPSIRRQDSFEMRLPELPKIDVHSVQRHMSNDSDPESPISPLLTSDPKSERSHSQ 785
Query: 688 TFSRPHSHSDDFPTKVREEE-SKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRPHSHSDD +RE + ++H+K PS +LAELSFAEWLYAVLGSIGAAIFGSFNPL
Sbjct: 786 TFSRPHSHSDDVSVIMRETKGARHRKPPSLQKLAELSFAEWLYAVLGSIGAAIFGSFNPL 845
Query: 747 LAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTER 806
LAYVIGL+VTAYY+ ++ HHL EV++WCLII CMG+VT+VANFLQHFYFGIMGEKMTER
Sbjct: 846 LAYVIGLVVTAYYRIDDTHHLEREVDRWCLIIGCMGIVTLVANFLQHFYFGIMGEKMTER 905
Query: 807 VRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 866
VRRMMFSAMLRNEVGWFD+EENSAD LSMRLANDATFVRAAFSNRLSIFIQDSAAVIV +
Sbjct: 906 VRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGL 965
Query: 867 IIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTV 926
+IG LL WRLALVA ATLPILS+SAIAQK WLAGFSRGIQ+MH+KASLVLEDAVRNIYTV
Sbjct: 966 LIGALLHWRLALVAFATLPILSVSAIAQKFWLAGFSRGIQEMHKKASLVLEDAVRNIYTV 1025
Query: 927 VAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDG 986
VAFCAGNKVMELYRLQLKKIF +SFLHGMAIGFAFGFSQFLLFACNALLLWYT ++ G
Sbjct: 1026 VAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRG 1085
Query: 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVK 1046
YMD PTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVF+IIDRVPKIDPDD+SA+K
Sbjct: 1086 YMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFDIIDRVPKIDPDDTSALK 1145
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
PPNVYGS+ELKNVDFCYPSRPEVLVLSNFSLKV GGQTVA+VGVSGSGKSTIISLIERFY
Sbjct: 1146 PPNVYGSLELKNVDFCYPSRPEVLVLSNFSLKVTGGQTVAIVGVSGSGKSTIISLIERFY 1205
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
DPVAGQV LDGRDLK YNLRWLR+HLGLVQQEPIIFSTTIRENIIYARHNA+EAE+KEAA
Sbjct: 1206 DPVAGQVFLDGRDLKEYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNATEAEMKEAA 1265
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS+IESE
Sbjct: 1266 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSAIESE 1325
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286
SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG+HD+L+AKNGLYV
Sbjct: 1326 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDTLVAKNGLYV 1385
Query: 1287 RLMQPHYGKGLRQHRLV 1303
RLMQPH+GK LRQHRLV
Sbjct: 1386 RLMQPHFGKALRQHRLV 1402
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224098270|ref|XP_002311144.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222850964|gb|EEE88511.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2332 bits (6044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1154/1277 (90%), Positives = 1217/1277 (95%), Gaps = 6/1277 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
++LA++IVY+A GVFAAGWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 126 FTDLAMHIVYLAVGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 185
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAI FVNCWQIALITL TGPFIVAAG
Sbjct: 186 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIGFVNCWQIALITLATGPFIVAAG 245
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAE+IQDAYAEAASIAEQAVSY RTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 246 GISNIFLHRLAESIQDAYAEAASIAEQAVSYSRTLYAFTNETLAKYSYATSLQATLRYGI 305
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLWVGRFLVT +KAHGGEIVTALFA+ILSGLGLNQAA
Sbjct: 306 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTSHKAHGGEIVTALFAIILSGLGLNQAA 365
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMISRSSST N DGN L +V GNIEFRNVYFSYLSRPEIPILS
Sbjct: 366 TNFYSFDQGRIAAYRLFEMISRSSSTVNQDGNNLVAVQGNIEFRNVYFSYLSRPEIPILS 425
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKK VALVGRNGSGKSSIIPLMERFYDP LGEVLLDGENIKNLKLEWLRSQIG
Sbjct: 426 GFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPNLGEVLLDGENIKNLKLEWLRSQIG 485
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIRDNI YGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT
Sbjct: 486 LVTQEPALLSLSIRDNIVYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 545
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNP+ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI
Sbjct: 546 EEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 605
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
RNADYIAVM+EG+L EMGTHDEL+ LYAELLKCEEAAKLPRRMPVRNYKET+ FQ+E
Sbjct: 606 RNADYIAVMEEGQLVEMGTHDELITLNGLYAELLKCEEAAKLPRRMPVRNYKETAAFQVE 665
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQRV-GIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
KD S HS+QEPSSPK+ +SPSLQR GI+RP D F+SQESPKVLSPP EKM+ENG+P+
Sbjct: 666 KDPSTGHSYQEPSSPKIARSPSLQRAPGIFRPPDSMFNSQESPKVLSPPPEKMMENGLPL 725
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D ADKEPSIRRQDSFEMRLPELPKIDV S++RQ SNGSDPESP+SPLLTSDPKNERSHSQ
Sbjct: 726 DGADKEPSIRRQDSFEMRLPELPKIDVQSAHRQASNGSDPESPVSPLLTSDPKNERSHSQ 785
Query: 688 TFSRPHSHSDDFPTKVRE-EESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRPHSHSDD P KV+E +++KH + PSFWRLAELS AEWLYAVLGSIGAAIFGSFNPL
Sbjct: 786 TFSRPHSHSDDVPIKVKESKDTKHLEEPSFWRLAELSLAEWLYAVLGSIGAAIFGSFNPL 845
Query: 747 LAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTER 806
LAYVI LIVTAYY + ++++VN+WCLIIA MG+VTVVANFLQHFYFGIMGEKMTER
Sbjct: 846 LAYVISLIVTAYYGRD----MQQDVNRWCLIIAIMGMVTVVANFLQHFYFGIMGEKMTER 901
Query: 807 VRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 866
VRRMMFSAMLRNEVGWFDEE+N ADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV
Sbjct: 902 VRRMMFSAMLRNEVGWFDEEDNGADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 961
Query: 867 IIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTV 926
+IG+LL+WRLALVALATLP+L++SAIAQKLWLAGFSRGIQ+MHRKASLVLED+VRNIYTV
Sbjct: 962 VIGVLLQWRLALVALATLPVLTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDSVRNIYTV 1021
Query: 927 VAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDG 986
VAFCAGNKVMELYRLQL+KIF +SF GMAIGF FGFSQFLLFACNALLLWYT SV++
Sbjct: 1022 VAFCAGNKVMELYRLQLQKIFKQSFFLGMAIGFGFGFSQFLLFACNALLLWYTAYSVKNH 1081
Query: 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVK 1046
++L TALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDR PKIDPDD+SA+K
Sbjct: 1082 NVNLHTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDREPKIDPDDNSALK 1141
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
PPNVYGSIELKNVDFCYP+RPE+LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY
Sbjct: 1142 PPNVYGSIELKNVDFCYPTRPEMLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1201
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAE+KEAA
Sbjct: 1202 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAA 1261
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE
Sbjct: 1262 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1321
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286
SSRVVQEALDTLIMGNKTTILIAHR AMMRHVDNIVVLNGGRIVEEG HDSL+AKNGLYV
Sbjct: 1322 SSRVVQEALDTLIMGNKTTILIAHRTAMMRHVDNIVVLNGGRIVEEGAHDSLMAKNGLYV 1381
Query: 1287 RLMQPHYGKGLRQHRLV 1303
RLMQPH+GKGLRQHRL+
Sbjct: 1382 RLMQPHFGKGLRQHRLI 1398
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820292|ref|XP_002878029.1| P-glycoprotein 20 [Arabidopsis lyrata subsp. lyrata] gi|297323867|gb|EFH54288.1| P-glycoprotein 20 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2281 bits (5911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1117/1277 (87%), Positives = 1199/1277 (93%), Gaps = 4/1277 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
L EL+L IVYIAGGVF +GWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 134 LVELSLTIVYIAGGVFISGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 193
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATF SGL I FVNCW+IALITL TGPFIVAAG
Sbjct: 194 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFISGLVIGFVNCWEIALITLATGPFIVAAG 253
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAENIQDAYAEAA IAEQA+SYIRTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 254 GISNIFLHRLAENIQDAYAEAAGIAEQAISYIRTLYAFTNETLAKYSYATSLQATLRYGI 313
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLW+GRF V + +A+GGEI+ ALFAVILSGLGLNQAA
Sbjct: 314 LISLVQGLGLGFTYGLAICSCALQLWIGRFFVHNGRANGGEIIAALFAVILSGLGLNQAA 373
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMI+RSSS N +G L SV GNIEFRNVYFSYLSRPEIPILS
Sbjct: 374 TNFYSFDQGRIAAYRLFEMITRSSSGVNQEGAVLASVQGNIEFRNVYFSYLSRPEIPILS 433
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG
Sbjct: 434 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 493
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIR+NIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA+T
Sbjct: 494 LVTQEPALLSLSIRENIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAMT 553
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNP+ILLLDEVTGGLDFEAER VQEALDLLMLGRSTIIIARRLSLI
Sbjct: 554 EEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERIVQEALDLLMLGRSTIIIARRLSLI 613
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
+NADYIAVM+EG+L EMGTHDEL+ G LYAELLKCEEA KLPRRMPVRNYKE++ FQ+E
Sbjct: 614 KNADYIAVMEEGQLVEMGTHDELINLGGLYAELLKCEEATKLPRRMPVRNYKESAVFQVE 673
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQR-VGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
+DSSA QEPSSPKM+KSPSLQR G++RP + FD++ESPK SP EKM ENG+P+
Sbjct: 674 RDSSAGCGVQEPSSPKMIKSPSLQRGNGVFRPQELCFDTEESPKDHSPAPEKMGENGLPL 733
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D ADKEP+I+RQDSFEMRLP+LPKIDV RQ SNGS+PESP+SPLLTSDPKNERSHSQ
Sbjct: 734 DDADKEPTIKRQDSFEMRLPDLPKIDVQCP-RQKSNGSEPESPVSPLLTSDPKNERSHSQ 792
Query: 688 TFSRPHSHSDDFPTKVR-EEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRP S DD + ++++H+++PSFWRLA+LSF EWLYAVLGS+GAAIFGSFNPL
Sbjct: 793 TFSRPLSSPDDTTANGKASKDAQHKESPSFWRLAQLSFPEWLYAVLGSLGAAIFGSFNPL 852
Query: 747 LAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTER 806
LAYVI L+VTAYYK + HLREEV+KWCLIIACMG+VTVVANFLQHFYFGIMGEKMTER
Sbjct: 853 LAYVIALVVTAYYK-SKGGHLREEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTER 911
Query: 807 VRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 866
VRRMMFSAMLRNEVGWFD+EENS DTLSMRLANDATFVRAAFSNRLSIFIQDS AVIVA+
Sbjct: 912 VRRMMFSAMLRNEVGWFDDEENSPDTLSMRLANDATFVRAAFSNRLSIFIQDSFAVIVAL 971
Query: 867 IIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTV 926
+IG+ L WRLALVALATLPIL+LSAIAQKLWLAGFS+GIQ+MHRKASLVLEDAVRNIYTV
Sbjct: 972 LIGLALGWRLALVALATLPILTLSAIAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTV 1031
Query: 927 VAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDG 986
VAFCAGNKVMELYR+QL++I +S+LHGMAIGFAFGFSQFLLFACNALLLW T SV G
Sbjct: 1032 VAFCAGNKVMELYRMQLQRILRQSYLHGMAIGFAFGFSQFLLFACNALLLWCTALSVNRG 1091
Query: 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVK 1046
YM L TA+ EYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVP I+PDD+SA+K
Sbjct: 1092 YMKLSTAITEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPTIEPDDNSALK 1151
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
PPNVYGSIELKN+DFCYP+RPEVLVLSNFSLKV+GGQTVAVVGVSGSGKSTIISL+ER+Y
Sbjct: 1152 PPNVYGSIELKNIDFCYPTRPEVLVLSNFSLKVSGGQTVAVVGVSGSGKSTIISLVERYY 1211
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
DPVAGQVLLDGRDLKLYNLRWLR+H+GLVQQEPIIFSTTIRENIIYARHNASEAE+KEAA
Sbjct: 1212 DPVAGQVLLDGRDLKLYNLRWLRSHMGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAA 1271
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
RIANAHHFISSLPHGYDTH+GMRGV+LTPGQKQRIAIARVVLKNAPI+L+DEASS+IESE
Sbjct: 1272 RIANAHHFISSLPHGYDTHIGMRGVELTPGQKQRIAIARVVLKNAPIILIDEASSAIESE 1331
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286
SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL AKNGLYV
Sbjct: 1332 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLAAKNGLYV 1391
Query: 1287 RLMQPHYGKGLRQHRLV 1303
RLMQPH+GKGLRQHRL+
Sbjct: 1392 RLMQPHFGKGLRQHRLI 1408
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233244|ref|NP_191092.1| ABC transporter B family member 20 [Arabidopsis thaliana] gi|75335876|sp|Q9M3B9.1|AB20B_ARATH RecName: Full=ABC transporter B family member 20; Short=ABC transporter ABCB.20; Short=AtABCB20; AltName: Full=Multidrug resistance protein 14; AltName: Full=P-glycoprotein 20 gi|7019665|emb|CAB75766.1| P-glycoprotein-like [Arabidopsis thaliana] gi|332645847|gb|AEE79368.1| ABC transporter B family member 20 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2269 bits (5880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1114/1279 (87%), Positives = 1196/1279 (93%), Gaps = 8/1279 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
L +L+L IVYIAGGVF +GWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 134 LVQLSLTIVYIAGGVFISGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 193
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATF SGL I FVNCW+IALITL TGPFIVAAG
Sbjct: 194 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFISGLVIGFVNCWEIALITLATGPFIVAAG 253
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAENIQDAYAEAA IAEQA+SYIRTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 254 GISNIFLHRLAENIQDAYAEAAGIAEQAISYIRTLYAFTNETLAKYSYATSLQATLRYGI 313
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLW+GRF V + +A+GGEI+ ALFAVILSGLGLNQAA
Sbjct: 314 LISLVQGLGLGFTYGLAICSCALQLWIGRFFVHNGRANGGEIIAALFAVILSGLGLNQAA 373
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMI+RSSS N +G L SV GNIEFRNVYFSYLSRPEIPILS
Sbjct: 374 TNFYSFDQGRIAAYRLFEMITRSSSVANQEGAVLASVQGNIEFRNVYFSYLSRPEIPILS 433
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG
Sbjct: 434 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 493
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIR+NIAYGRDATLDQIEEAAK AHAHTFISSLEKGYETQVGRAGLA+T
Sbjct: 494 LVTQEPALLSLSIRENIAYGRDATLDQIEEAAKNAHAHTFISSLEKGYETQVGRAGLAMT 553
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNP+ILLLDEVTGGLDFEAER VQEALDLLMLGRSTIIIARRLSLI
Sbjct: 554 EEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERIVQEALDLLMLGRSTIIIARRLSLI 613
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
+NADYIAVM+EG+L EMGTHDEL+ G LYAELLKCEEA KLPRRMPVRNYKE++ F++E
Sbjct: 614 KNADYIAVMEEGQLVEMGTHDELINLGGLYAELLKCEEATKLPRRMPVRNYKESAVFEVE 673
Query: 569 KDSSASHSFQEPSSPKMLKSPSLQR-VGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
+DSSA QEPSSPKM+KSPSLQR G++RP + FD++ESPK SP SEK E+GM +
Sbjct: 674 RDSSAGCGVQEPSSPKMIKSPSLQRGSGVFRPQELCFDTEESPKAHSPASEKTGEDGMSL 733
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D ADKEP+I+RQDSFEMRLP LPK+DV +Q SNGS+PESP+SPLLTSDPKNERSHSQ
Sbjct: 734 DCADKEPTIKRQDSFEMRLPHLPKVDVQCP-QQKSNGSEPESPVSPLLTSDPKNERSHSQ 792
Query: 688 TFSRPHSHSDDFPTKVREEESK---HQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFN 744
TFSRP S DD TK + SK H+++PSFWRLA+LSF EWLYAVLGS+GAAIFGSFN
Sbjct: 793 TFSRPLSSPDD--TKANGKASKDAQHKESPSFWRLAQLSFPEWLYAVLGSLGAAIFGSFN 850
Query: 745 PLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMT 804
PLLAYVI L+VT YYK + HLREEV+KWCLIIACMG+VTVVANFLQHFYFGIMGEKMT
Sbjct: 851 PLLAYVIALVVTEYYK-SKGGHLREEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMT 909
Query: 805 ERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIV 864
ERVRRMMFSAMLRNEVGWFD+EENS DTLSMRLANDATFVRAAFSNRLSIFIQDS AVIV
Sbjct: 910 ERVRRMMFSAMLRNEVGWFDDEENSPDTLSMRLANDATFVRAAFSNRLSIFIQDSFAVIV 969
Query: 865 AVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIY 924
A++IG+LL WRLALVALATLPIL+LSAIAQKLWLAGFS+GIQ+MHRKASLVLEDAVRNIY
Sbjct: 970 ALLIGLLLGWRLALVALATLPILTLSAIAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIY 1029
Query: 925 TVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVR 984
TVVAFCAGNKVMELYR+QL++I +S+LHGMAIGFAFGFSQFLLFACNALLLW T SV
Sbjct: 1030 TVVAFCAGNKVMELYRMQLQRILRQSYLHGMAIGFAFGFSQFLLFACNALLLWCTALSVN 1089
Query: 985 DGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSA 1044
GYM L TA+ EYMVFSFATFALVEPFGLAPYILKRRKSLISVFEI+DRVP I+PDD+SA
Sbjct: 1090 RGYMKLSTAITEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIVDRVPTIEPDDNSA 1149
Query: 1045 VKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER 1104
+KPPNVYGSIELKNVDFCYP+RPE+LVLSNFSLK++GGQTVAVVGVSGSGKSTIISL+ER
Sbjct: 1150 LKPPNVYGSIELKNVDFCYPTRPEILVLSNFSLKISGGQTVAVVGVSGSGKSTIISLVER 1209
Query: 1105 FYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKE 1164
+YDPVAGQVLLDGRDLKLYNLRWLR+H+GLVQQEPIIFSTTIRENIIYARHNASEAE+KE
Sbjct: 1210 YYDPVAGQVLLDGRDLKLYNLRWLRSHMGLVQQEPIIFSTTIRENIIYARHNASEAEMKE 1269
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
AARIANAHHFISSLPHGYDTH+GMRGV+LTPGQKQRIAIARVVLKNAPI+L+DEASSSIE
Sbjct: 1270 AARIANAHHFISSLPHGYDTHIGMRGVELTPGQKQRIAIARVVLKNAPIILIDEASSSIE 1329
Query: 1225 SESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGL 1284
SESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL AKNGL
Sbjct: 1330 SESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLAAKNGL 1389
Query: 1285 YVRLMQPHYGKGLRQHRLV 1303
YVRLMQPH+GKGLRQHRL+
Sbjct: 1390 YVRLMQPHFGKGLRQHRLI 1408
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1303 | ||||||
| TAIR|locus:2100666 | 1408 | ABCB20 "ATP-binding cassette B | 0.975 | 0.902 | 0.827 | 0.0 | |
| TAIR|locus:2039747 | 1407 | ABCB6 "ATP-binding cassette B6 | 0.977 | 0.905 | 0.819 | 0.0 | |
| UNIPROTKB|Q10N72 | 1411 | LOC_Os03g17180 "ABC transporte | 0.973 | 0.899 | 0.781 | 0.0 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.416 | 0.422 | 0.450 | 2.5e-252 | |
| UNIPROTKB|Q7EZL2 | 1344 | P0705A05.112-2 "Putative P-gly | 0.510 | 0.494 | 0.383 | 1.9e-247 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.399 | 0.413 | 0.458 | 1e-246 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.447 | 0.465 | 0.408 | 1.9e-245 | |
| UNIPROTKB|Q8GU75 | 1264 | mdr11 "MDR-like ABC transporte | 0.402 | 0.415 | 0.459 | 1.2e-243 | |
| TAIR|locus:2019958 | 1227 | PGP10 "P-glycoprotein 10" [Ara | 0.466 | 0.495 | 0.401 | 6.8e-243 | |
| TAIR|locus:2010464 | 1245 | ABCB13 "ATP-binding cassette B | 0.481 | 0.504 | 0.391 | 6.3e-238 |
| TAIR|locus:2100666 ABCB20 "ATP-binding cassette B20" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5372 (1896.1 bits), Expect = 0., P = 0.
Identities = 1058/1279 (82%), Positives = 1139/1279 (89%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
L +L+L IVYIAGGVF +GWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 134 LVQLSLTIVYIAGGVFISGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 193
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATF SGL I FVNCW+IALITL TGPFIVAAG
Sbjct: 194 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFISGLVIGFVNCWEIALITLATGPFIVAAG 253
Query: 149 GISNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAEN +SYIRTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 254 GISNIFLHRLAENIQDAYAEAAGIAEQAISYIRTLYAFTNETLAKYSYATSLQATLRYGI 313
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCALQLW+GRF V + +A+GGEI+ ALFAVILSGLGLNQAA
Sbjct: 314 LISLVQGLGLGFTYGLAICSCALQLWIGRFFVHNGRANGGEIIAALFAVILSGLGLNQAA 373
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMI+RSSS N +G L SV GNIEFRNVYFSYLSRPEIPILS
Sbjct: 374 TNFYSFDQGRIAAYRLFEMITRSSSVANQEGAVLASVQGNIEFRNVYFSYLSRPEIPILS 433
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG
Sbjct: 434 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 493
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIR+NIAYGRDATLDQIEEAAK AHAHTFISSLEKGYETQVGRAGLA+T
Sbjct: 494 LVTQEPALLSLSIRENIAYGRDATLDQIEEAAKNAHAHTFISSLEKGYETQVGRAGLAMT 553
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLLNP+ILLLDEVTGGLDFEAER VQEALDLLMLGRSTIIIARRLSLI
Sbjct: 554 EEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERIVQEALDLLMLGRSTIIIARRLSLI 613
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
+NADYIAVM+EG+L EMGTHDEL+ G LYAELLKCEEA KLPRRMPVRNYKE++ F++E
Sbjct: 614 KNADYIAVMEEGQLVEMGTHDELINLGGLYAELLKCEEATKLPRRMPVRNYKESAVFEVE 673
Query: 569 KDSSASHSFQEXXXXXXXXXXXXQR-VGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
+DSSA QE QR G++RP + FD++ESPK SP SEK E+GM +
Sbjct: 674 RDSSAGCGVQEPSSPKMIKSPSLQRGSGVFRPQELCFDTEESPKAHSPASEKTGEDGMSL 733
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D ADKEP+I+RQDSFEMRLP LPK+DV +Q SNGS+PESP+SPLLTSDPKNERSHSQ
Sbjct: 734 DCADKEPTIKRQDSFEMRLPHLPKVDVQCP-QQKSNGSEPESPVSPLLTSDPKNERSHSQ 792
Query: 688 TFSRPHSHSDDFPTKVREEESK---HQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFN 744
TFSRP S DD TK + SK H+++PSFWRLA+LSF EWLYAVLGS+GAAIFGSFN
Sbjct: 793 TFSRPLSSPDD--TKANGKASKDAQHKESPSFWRLAQLSFPEWLYAVLGSLGAAIFGSFN 850
Query: 745 PLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMT 804
PLLAYVI L+VT YYK + HLREEV+KWCLIIACMG+VTVVANFLQHFYFGIMGEKMT
Sbjct: 851 PLLAYVIALVVTEYYK-SKGGHLREEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMT 909
Query: 805 ERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIV 864
ERVRRMMFSAMLRNEVGWFD+EENS DTLSMRLANDATFVRAAFSNRLSIFIQDS AVIV
Sbjct: 910 ERVRRMMFSAMLRNEVGWFDDEENSPDTLSMRLANDATFVRAAFSNRLSIFIQDSFAVIV 969
Query: 865 AVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIY 924
A++IG+LL WRLALVALATLPIL+LSAIAQKLWLAGFS+GIQ+MHRKASLVLEDAVRNIY
Sbjct: 970 ALLIGLLLGWRLALVALATLPILTLSAIAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIY 1029
Query: 925 TVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVR 984
TVVAFCAGNKVMELYR+QL++I +S+LHGMAIGFAFGFSQFLLFACNALLLW T SV
Sbjct: 1030 TVVAFCAGNKVMELYRMQLQRILRQSYLHGMAIGFAFGFSQFLLFACNALLLWCTALSVN 1089
Query: 985 DGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSA 1044
GYM L TA+ EYMVFSFATFALVEPFGLAPYILKRRKSLISVFEI+DRVP I+PDD+SA
Sbjct: 1090 RGYMKLSTAITEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIVDRVPTIEPDDNSA 1149
Query: 1045 VKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNXXXXXXXXXXXXXXXXXXXXLIER 1104
+KPPNVYGSIELKNVDFCYP+RPE+LVLSNFSLK++ L+ER
Sbjct: 1150 LKPPNVYGSIELKNVDFCYPTRPEILVLSNFSLKISGGQTVAVVGVSGSGKSTIISLVER 1209
Query: 1105 FYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKE 1164
+YDPVAGQVLLDGRDLKLYNLRWLR+H+GLVQQEPIIFSTTIRENIIYARHNASEAE+KE
Sbjct: 1210 YYDPVAGQVLLDGRDLKLYNLRWLRSHMGLVQQEPIIFSTTIRENIIYARHNASEAEMKE 1269
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXX 1224
AARIANAHHFISSLPHGYDTH+GMRGV+LTPGQKQRIAIARVVLKNAPI+L+D
Sbjct: 1270 AARIANAHHFISSLPHGYDTHIGMRGVELTPGQKQRIAIARVVLKNAPIILIDEASSSIE 1329
Query: 1225 XXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGL 1284
RVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL AKNGL
Sbjct: 1330 SESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLAAKNGL 1389
Query: 1285 YVRLMQPHYGKGLRQHRLV 1303
YVRLMQPH+GKGLRQHRL+
Sbjct: 1390 YVRLMQPHFGKGLRQHRLI 1408
|
|
| TAIR|locus:2039747 ABCB6 "ATP-binding cassette B6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5325 (1879.6 bits), Expect = 0., P = 0.
Identities = 1046/1277 (81%), Positives = 1125/1277 (88%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
L EL+L IVYIAGGVF +GWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNG
Sbjct: 132 LLELSLTIVYIAGGVFISGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNG 191
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
DIVSQVLSDVLLIQSALSEKVGNYIHNMATF SGL I FVNCW+IALITL TGPFIVAAG
Sbjct: 192 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFISGLIIGFVNCWEIALITLATGPFIVAAG 251
Query: 149 GISNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GISNIFLHRLAEN VSY+RTLYAFTNETLAKYSYATSLQATLRYGI
Sbjct: 252 GISNIFLHRLAENIQDAYAEAASIAEQAVSYVRTLYAFTNETLAKYSYATSLQATLRYGI 311
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
LISLVQGLGLGFTYGLAICSCA+QLW+GRF V H++A+GGEI+TALFAVILSGLGLNQAA
Sbjct: 312 LISLVQGLGLGFTYGLAICSCAMQLWIGRFFVIHHRANGGEIITALFAVILSGLGLNQAA 371
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328
TNFYSFDQGRIAAYRL+EMISRSSS TN +G L +V GNIEFRNVYFSYLSRPEIPILS
Sbjct: 372 TNFYSFDQGRIAAYRLFEMISRSSSGTNQEGIILSAVQGNIEFRNVYFSYLSRPEIPILS 431
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG
Sbjct: 432 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 491
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
LVTQEPALLSLSIR+NIAYGRDATLDQIEEAAK AHAHTFISSLEKGYETQVG+ GL LT
Sbjct: 492 LVTQEPALLSLSIRENIAYGRDATLDQIEEAAKKAHAHTFISSLEKGYETQVGKTGLTLT 551
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
EEQKIKLSIARAVLL+P+ILLLDEVTGGLDFEAER VQEALDLLMLGRSTIIIARRLSLI
Sbjct: 552 EEQKIKLSIARAVLLDPTILLLDEVTGGLDFEAERVVQEALDLLMLGRSTIIIARRLSLI 611
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIE 568
RNADYIAVM+EG+L EMGTHDEL+ G+LYAELLKCEEA KLPRRMPVRNY +++ FQ E
Sbjct: 612 RNADYIAVMEEGQLLEMGTHDELINLGNLYAELLKCEEATKLPRRMPVRNYNDSAAFQAE 671
Query: 569 KDSSASHSFQEXXXXXXXXXXXXQRV-GIYRPTDGAFDSQESPKVLSPPSEKMLENGMPM 627
+DSSA FQE QR ++R + F+S+ESP SP EK+ ENG +
Sbjct: 672 RDSSAGRGFQEPSSPKMAKSPSLQRGHNVFRSQELCFNSEESPNDHSPAPEKLGENGSSL 731
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
D +KEP+I+RQDSFEMRLPELPKID+ RQ SNGSDPESPISPLL SDP+NERSHSQ
Sbjct: 732 DVGEKEPTIKRQDSFEMRLPELPKIDIQCPQRQKSNGSDPESPISPLLISDPQNERSHSQ 791
Query: 688 TFSRPHSHSDDFPTKVR-EEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRP HSDD V+ ++ +H++ PSFWRLA+LSF EWLYAVLGSIGAAIFGSFNPL
Sbjct: 792 TFSRPLGHSDDTSASVKVAKDGQHKEPPSFWRLAQLSFPEWLYAVLGSIGAAIFGSFNPL 851
Query: 747 LAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTER 806
LAYVI L+VT YY + HLREEV+KWCLIIACMG+VTVVANFLQHFYFGIMGEKMTER
Sbjct: 852 LAYVIALVVTTYYT-SKGSHLREEVDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTER 910
Query: 807 VRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV 866
VRRMMFSAMLRNEVGW+DEEENS DTLSMRLANDATFVRAAFSNRLSIFIQDS AVIVA+
Sbjct: 911 VRRMMFSAMLRNEVGWYDEEENSPDTLSMRLANDATFVRAAFSNRLSIFIQDSFAVIVAI 970
Query: 867 IIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTV 926
+IG+LL WRLALVALATLP+L+LSAIAQKLWLAGFS+GIQ+MHRKASLVLEDAVRNIYTV
Sbjct: 971 LIGLLLGWRLALVALATLPVLTLSAIAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTV 1030
Query: 927 VAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDG 986
VAFCAGNKVMELYRLQL++I +SF HGMAIGFAFGFSQFLLFACNALLLWYT SV
Sbjct: 1031 VAFCAGNKVMELYRLQLQRILRQSFFHGMAIGFAFGFSQFLLFACNALLLWYTALSVDRR 1090
Query: 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVK 1046
YM L TAL EYMVFSFATFALVEPFGLAPYILKRR+SL SVFEIIDRVP I+PDD+SA+
Sbjct: 1091 YMKLSTALTEYMVFSFATFALVEPFGLAPYILKRRRSLASVFEIIDRVPTIEPDDTSALS 1150
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNXXXXXXXXXXXXXXXXXXXXLIERFY 1106
PPNVYGSIELKN+DFCYP+RPEVLVLSNFSLKVN LIER+Y
Sbjct: 1151 PPNVYGSIELKNIDFCYPTRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERYY 1210
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
DPVAGQVLLDGRDLK YNLRWLR+H+GL+QQEPIIFSTTIRENIIYARHNASEAE+KEAA
Sbjct: 1211 DPVAGQVLLDGRDLKSYNLRWLRSHMGLIQQEPIIFSTTIRENIIYARHNASEAEMKEAA 1270
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXX 1226
RIANAHHFISSLPHGYDTH+GMRGV+LT GQKQRIAIARVVLKNAPILL+D
Sbjct: 1271 RIANAHHFISSLPHGYDTHIGMRGVELTQGQKQRIAIARVVLKNAPILLIDEASSSIESE 1330
Query: 1227 XXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286
RVVQEALDTLIMGNKTTILIAHR AMMRHVDNIVVLNGG+IVEEGTHD L KNGLYV
Sbjct: 1331 SSRVVQEALDTLIMGNKTTILIAHRVAMMRHVDNIVVLNGGKIVEEGTHDCLAGKNGLYV 1390
Query: 1287 RLMQPHYGKGLRQHRLV 1303
RLMQPH+GK LR+H+L+
Sbjct: 1391 RLMQPHFGKNLRRHQLI 1407
|
|
| UNIPROTKB|Q10N72 LOC_Os03g17180 "ABC transporter family protein, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 5092 (1797.5 bits), Expect = 0., P = 0.
Identities = 999/1279 (78%), Positives = 1106/1279 (86%)
Query: 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDI 90
E ALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRS+YVQVLLNQDMSFFDTYGNNGDI
Sbjct: 137 EHALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDI 196
Query: 91 VSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGI 150
VSQVLSDVLLIQSA+SEKVGNYIHNMATF GL + +NCWQI L+TL TGP IVAAGGI
Sbjct: 197 VSQVLSDVLLIQSAISEKVGNYIHNMATFVGGLVVGLINCWQITLLTLATGPLIVAAGGI 256
Query: 151 SNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATLRYGILI 210
SNIFLHRLAEN ++YIRTLYAFTNETLAKYSYATSLQATLRYGILI
Sbjct: 257 SNIFLHRLAENIQDAYAEAASIAEQAIAYIRTLYAFTNETLAKYSYATSLQATLRYGILI 316
Query: 211 SLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN 270
SLVQG+GLGFTYGLAICSCALQLWVGR L+ KA GG++V ALF+VILSGLGLNQAATN
Sbjct: 317 SLVQGIGLGFTYGLAICSCALQLWVGRHLIARGKADGGQVVVALFSVILSGLGLNQAATN 376
Query: 271 FYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGF 330
FYSF+QGRIAAYRLYEMISRS+S+TN +G+TLP V GNIEFRNVYFSYLSRPEIPILSGF
Sbjct: 377 FYSFEQGRIAAYRLYEMISRSTSSTNQEGSTLPLVQGNIEFRNVYFSYLSRPEIPILSGF 436
Query: 331 YLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLV 390
+LTVPA+K VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK+EWLRSQIGLV
Sbjct: 437 FLTVPARKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKVEWLRSQIGLV 496
Query: 391 TQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450
TQEPALLSLSIR+NIAYGR AT DQIEEAAK AHAH FISSLEKGYETQVGRAG+AL++E
Sbjct: 497 TQEPALLSLSIRENIAYGRSATFDQIEEAAKTAHAHGFISSLEKGYETQVGRAGMALSDE 556
Query: 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN 510
QKIK+SIARAVL NPSILLLDEVTGGLDFEAE+AVQEALD+LMLGRSTIIIARRLSLI+N
Sbjct: 557 QKIKISIARAVLSNPSILLLDEVTGGLDFEAEKAVQEALDVLMLGRSTIIIARRLSLIKN 616
Query: 511 ADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKD 570
ADYIAVM+EG L EMGTHDELL LYAELL+CEEA KLP+RMP +N KE + QIE D
Sbjct: 617 ADYIAVMEEGHLVEMGTHDELLNLDGLYAELLRCEEATKLPKRMPTKNGKERKSLQIE-D 675
Query: 571 SSASHSFQEXXXXXXXXXXXXQRV-GIYR--PTDGAFDSQESPKVLSPPSEKMLENGMPM 627
SAS SFQE QR G+ + +D +S +SPK SPPSE+ ++NG+P+
Sbjct: 676 LSASQSFQESSSPKMAKSPSLQRTHGMLQFWRSDTNKNSHDSPKDQSPPSEQTIDNGIPL 735
Query: 628 DAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQ 687
A ++ PSI+RQDSFEM+LP+LPK+D+H RQ+S S+P+SPISPLLTSDPKNERSHSQ
Sbjct: 736 VATERVPSIKRQDSFEMKLPDLPKVDIHPIQRQSSKNSEPDSPISPLLTSDPKNERSHSQ 795
Query: 688 TFSRPHSHSDDFPTKVRE-EESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPL 746
TFSRP S DD ++ E EE +H K PSFWRLA LS AEW YA+LG+IGAAIFGSFNPL
Sbjct: 796 TFSRPQSERDDTSSEQSEPEELQHHKPPSFWRLAALSIAEWPYALLGTIGAAIFGSFNPL 855
Query: 747 LAYVIGLIVTAYYKPE--ERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMT 804
LAY I LIV+AYY+ + + HH EVN+WCL I MGV+TV+ N+LQHFYFGIMGEKMT
Sbjct: 856 LAYTIALIVSAYYRIDVSDMHH---EVNRWCLFIVGMGVITVLVNWLQHFYFGIMGEKMT 912
Query: 805 ERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIV 864
ER+RRMMFSA+LRNEVGWFD+EENSADTLSMRLANDATFVRAAFSNRLSIFIQD+AAV V
Sbjct: 913 ERIRRMMFSAILRNEVGWFDKEENSADTLSMRLANDATFVRAAFSNRLSIFIQDTAAVSV 972
Query: 865 AVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIY 924
A++IGMLL WR+ALVALATLP+L +SAIAQKLWLAGFS+GIQ+MHRKASLVLEDAVRNIY
Sbjct: 973 ALLIGMLLGWRVALVALATLPVLVISAIAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIY 1032
Query: 925 TVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVR 984
TVVAFCAGNK+MELYRL L KI +S L G+AIGF FGFSQFLLFACNALLLWYT SV
Sbjct: 1033 TVVAFCAGNKIMELYRLHLCKILKQSLLQGLAIGFGFGFSQFLLFACNALLLWYTAISVD 1092
Query: 985 DGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSA 1044
+ + T LKEY++FSFA+FALVEPFGLAPYILKRRKSLISVF+IIDR PKIDPDD++
Sbjct: 1093 KQRLTIATGLKEYILFSFASFALVEPFGLAPYILKRRKSLISVFQIIDREPKIDPDDNTG 1152
Query: 1045 VKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNXXXXXXXXXXXXXXXXXXXXLIER 1104
+KPPNVYGSIE KNVDF YP+RPE+LVLSNF+LKV+ LIER
Sbjct: 1153 LKPPNVYGSIEFKNVDFSYPARPEILVLSNFNLKVSGGQTVAVVGVSGSGKSTIISLIER 1212
Query: 1105 FYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKE 1164
FYDPV GQVLLDGRD+K +NLRWLR+H+GL+QQEP+IFSTTIRENIIYARHNA+EAE+KE
Sbjct: 1213 FYDPVTGQVLLDGRDIKSFNLRWLRSHMGLIQQEPVIFSTTIRENIIYARHNATEAEMKE 1272
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXX 1224
AARIANAHHFISSLPHGYDTHVGMRGVDLT GQKQRIAIARVVLKNAPILLLD
Sbjct: 1273 AARIANAHHFISSLPHGYDTHVGMRGVDLTAGQKQRIAIARVVLKNAPILLLDEASSAIE 1332
Query: 1225 XXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGL 1284
RVVQEALDTL+MGNKTTILIAHRAAMM+HVDNIVVLNGGRIVE+GTHDSL+ NGL
Sbjct: 1333 SESSRVVQEALDTLVMGNKTTILIAHRAAMMKHVDNIVVLNGGRIVEQGTHDSLMDLNGL 1392
Query: 1285 YVRLMQPHYGKGLRQHRLV 1303
YVRLMQPH+GKGLRQHRL+
Sbjct: 1393 YVRLMQPHFGKGLRQHRLM 1411
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 2.5e-252, Sum P(2) = 2.5e-252
Identities = 252/559 (45%), Positives = 365/559 (65%)
Query: 6 YIWGFPVP---KFVDCLVVAFG-----VEVWLSEL---ALYIVYIAGGVFAAGWIEVSCW 54
++ G +P +F LV +FG VE + E+ ALY + + ++A+ W E+SCW
Sbjct: 52 FVHGCSLPLFLRFFADLVNSFGSNSNNVEKMMEEVLKYALYFLVVGAAIWASSWAEISCW 111
Query: 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH 114
+ +GERQT +R +Y++ LNQD+ FFDT D+V + +D +++Q A+SEK+GN+IH
Sbjct: 112 MWSGERQTTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIH 171
Query: 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENXXXXXXXXXXXXX 174
MATF SG + F WQ+AL+TL P I GGI L +L+
Sbjct: 172 YMATFVSGFIVGFTAVWQLALVTLAVVPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVE 231
Query: 175 XXVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLW 234
V IR + AF E+ A +Y+++L+ + G L +G+GLG TY + C AL LW
Sbjct: 232 QTVVQIRVVMAFVGESRASQAYSSALKIAQKLGYKTGLAKGMGLGATYFVVFCCYALLLW 291
Query: 235 VGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSST 294
G +LV H+ +GG + +FAV++ GL L Q+A + +F + ++AA +++ +I +
Sbjct: 292 YGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTI 351
Query: 295 --TNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352
+ G L SV G +E +NV FSY SRP++ IL+ F L+VPA K +ALVG +GSGKS+
Sbjct: 352 ERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILNNFCLSVPAGKTIALVGSSGSGKST 411
Query: 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DA 411
++ L+ERFYDP G+VLLDG+++K LKL WLR QIGLV+QEPAL + SI++NI GR DA
Sbjct: 412 VVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIGLVSQEPALFATSIKENILLGRPDA 471
Query: 412 TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471
+IEEAA++A+AH+FI L G++TQVG GL L+ QK +++IARA+L NP+ILLLD
Sbjct: 472 DQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLD 531
Query: 472 EVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
E T LD E+E+ VQEALD M+GR+T+IIA RLS IR AD +AV+ +G + E+GTHDEL
Sbjct: 532 EATSALDSESEKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDEL 591
Query: 532 LATGD--LYAELLKCEEAA 548
+ G+ +YA+L+K +EAA
Sbjct: 592 FSKGENGVYAKLIKMQEAA 610
|
|
| UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1226 (436.6 bits), Expect = 1.9e-247, Sum P(2) = 1.9e-247
Identities = 264/689 (38%), Positives = 407/689 (59%)
Query: 620 MLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVH-----SSNRQTSNGSDPESPIS-P 673
+L+ G + + + R D RL + + H ++ R ++ S + +S P
Sbjct: 640 VLQGGAISEVGTHDELMARGDGTYARLIRMQE-QAHEAALVAARRSSARPSSARNSVSSP 698
Query: 674 LLTSDPKNERSHSQTFSRPHSHSDDFPTKV------REEESKHQ---KAPSFWRLAELSF 724
++T + RS +SR S +D F T + ++++ +H +A SFWRLA+++
Sbjct: 699 IITRNSSYGRS---PYSRRLSDAD-FITGLGLGVDSKQQQQQHYFRVQASSFWRLAKMNS 754
Query: 725 AEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVV 784
EW YA++ S+G+ + GSF+ + AYV+ +++ YY P+ + + ++ K+C ++ M
Sbjct: 755 PEWGYALVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAY-MDRQIAKYCYLLIGMSSA 813
Query: 785 TVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFV 844
++ N +QH ++ +GE +T+RVR M +A+LRNE+ WFD E+NS+ ++ RLA DA V
Sbjct: 814 ALLFNTVQHLFWDTVGENLTKRVRERMLAAVLRNEIAWFDMEDNSSARIAARLALDAQNV 873
Query: 845 RAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRG 904
R+A +R+SI +Q+SA ++VA G +L+WRLALV LA P++ + + QK++L GFS
Sbjct: 874 RSAIGDRISIIVQNSALMLVACTAGFVLQWRLALVLLAVFPLVVAATVLQKMFLKGFSGD 933
Query: 905 IQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFS 964
+++ H +A+ + +AV N+ TV AF + K++ L+ L + F G G +G +
Sbjct: 934 LERAHARATQIAGEAVANVRTVAAFGSEAKIVGLFEANLAGPLRRCFWKGQIAGSGYGVA 993
Query: 965 QFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSL 1024
QFLL+A AL LWY V+ G D ++ +MV + E LAP +K +++
Sbjct: 994 QFLLYASYALGLWYAAWLVKHGVSDFSKTIRVFMVLMVSANGAAETLTLAPDFVKGGRAM 1053
Query: 1025 ISVFEIIDRVPKIDPDD-SSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNXXX 1083
+VFE +DR +I+PDD +A P G +ELK+VDF YPSRPEV V + SL+
Sbjct: 1054 QAVFEAMDRRTEIEPDDVDAAAVPERPRGEVELKHVDFAYPSRPEVQVFRDLSLRARAGR 1113
Query: 1084 XXXXXXXXXXXXXXXXXLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS 1143
L++RFY+P +G+VLLDGRDL+ +NLR LR + LV QEP +F+
Sbjct: 1114 TLALVGASGCGKSSVLALVQRFYEPNSGRVLLDGRDLRKFNLRSLRRAMALVPQEPFLFA 1173
Query: 1144 TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203
TI +NI Y R A+EAEV EAA ANAH FIS+LP GY T VG RGV L+ GQ+QRIAI
Sbjct: 1174 ATIHDNIAYGREGATEAEVVEAATAANAHKFISALPEGYGTLVGERGVQLSGGQRQRIAI 1233
Query: 1204 ARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVV 1263
AR ++K APILLLD R VQEAL + +TTI++AHR A +R+ I V
Sbjct: 1234 ARALVKQAPILLLDEATSALDAESERSVQEALASSSGSGRTTIVVAHRLATVRNAHTIAV 1293
Query: 1264 LNGGRIVEEGTHDSLLAKN--GLYVRLMQ 1290
++ G++ E+G+H LL + G Y R++Q
Sbjct: 1294 IDDGKVAEQGSHSHLLNHHPDGCYARMLQ 1322
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 1.0e-246, Sum P(2) = 1.0e-246
Identities = 241/526 (45%), Positives = 345/526 (65%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
+S+ +LY VY+ V A+ ++E++CW+ TGERQ +R RY++ +L QD+ FFDT G
Sbjct: 88 VSKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDARTG 147
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
D+V V +D LL+Q A+ EKVGN+IH ++TF +GL + FV+ W++AL+++ P I AG
Sbjct: 148 DVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAG 207
Query: 149 GISNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
G+ L L ++ +RT+Y++ E+ A SY+ ++Q TL+ G
Sbjct: 208 GLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLKLGY 267
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
+ +GLG+G TYG+A S AL W + + + GG+ TA+F+ I+ GL L Q+
Sbjct: 268 KAGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLGQSF 327
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTN--YDGNTLPSVHGNIEFRNVYFSYLSRPEIPI 326
+N +F +G+IA Y+L E+I + + DG L VHGNIEF+ V FSY SRP++ I
Sbjct: 328 SNLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFSYPSRPDVMI 387
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
F L PA K A+VG +GSGKS+++ L+ERFYDP G+VLLD +IK L+L+WLR Q
Sbjct: 388 FRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWLRDQ 447
Query: 387 IGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
IGLV QEPAL + +I +NI YG+ DAT+ ++E AA A+AH+FI+ L GY TQVG GL
Sbjct: 448 IGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGERGL 507
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
L+ QK +++IARA+L NP ILLLDE T LD +E VQEALD LM+GR+T+++A RL
Sbjct: 508 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRL 567
Query: 506 SLIRNADYIAVMDEGRLFEMGTHDELLATGD--LYAELLKCEEAAK 549
S IR D IAV+ +G++ E GTHDELLA G YA L++ +E A+
Sbjct: 568 STIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMAR 613
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1198 (426.8 bits), Expect = 1.9e-245, Sum P(2) = 1.9e-245
Identities = 240/588 (40%), Positives = 364/588 (61%)
Query: 706 EESKHQKAPS--FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEE 763
E + +AP F+RL +L+ EW Y+++G++G+ + G P A V+ ++ +Y +
Sbjct: 661 ETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDY 720
Query: 764 RHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWF 823
+ + ++ I G+ V A +QH++F IMGE +T RVRRMM SA+LRNEVGWF
Sbjct: 721 -DSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWF 779
Query: 824 DEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALAT 883
DE+E+++ ++ RLA DA V++A + R+S+ +Q+ +++ + I+ ++EWR++L+ L T
Sbjct: 780 DEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGT 839
Query: 884 LPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQL 943
P+L L+ AQ+L L GF+ K H K S++ + V NI TV AF A +K++ L+ +L
Sbjct: 840 FPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHEL 899
Query: 944 KKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFA 1003
+ +S GF FG SQ L+ AL+LWY V G +K ++V
Sbjct: 900 RVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVIT 959
Query: 1004 TFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCY 1063
++ E LAP I++ +++ SVF ++DR +IDPDD+ A + G IE ++VDF Y
Sbjct: 960 ANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAY 1019
Query: 1064 PSRPEVLVLSNFSLKVNXXXXXXXXXXXXXXXXXXXXLIERFYDPVAGQVLLDGRDLKLY 1123
PSRP+V+V +F+L++ +IERFYDP+AG+V++DG+D++
Sbjct: 1020 PSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRL 1079
Query: 1124 NLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYD 1183
NL+ LR +GLVQQEP +F+ TI +NI Y + A+E+EV +AAR ANAH FIS LP GY
Sbjct: 1080 NLKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYK 1139
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNK 1243
T VG RGV L+ GQKQRIAIAR VLKN +LLLD V+QEAL+ L+ G +
Sbjct: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRG-R 1198
Query: 1244 TTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQ 1290
TT+++AHR + +R VD I V+ GRIVE+G+H L+++ G Y RL+Q
Sbjct: 1199 TTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQ 1246
|
|
| UNIPROTKB|Q8GU75 mdr11 "MDR-like ABC transporter" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1197 (426.4 bits), Expect = 1.2e-243, Sum P(2) = 1.2e-243
Identities = 243/529 (45%), Positives = 352/529 (66%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
+++ +L VY+ + + W EV+CW+ TGERQ A +R Y++ +L+QD++ FDT + G
Sbjct: 94 VAKYSLDFVYLGIVILFSSWTEVACWMHTGERQAAKMRQAYLRSMLDQDIAVFDTEASTG 153
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
++++ + SD+L++Q A+SEKVGN++H ++ F +G AI F WQI+L+TL P I AG
Sbjct: 154 EVINAITSDILVVQDAISEKVGNFMHYISRFLAGFAIGFSQVWQISLVTLAIVPLIAIAG 213
Query: 149 GISNIFLHRLAENXXXXXXXXXXXXXXXVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GI L + +RT+ AF E A +Y +L T +YG
Sbjct: 214 GIYAYVTIGLMARVRKSYVKAGEIAEEVIGNVRTVQAFVGEEKAVRTYREALLRTYKYGK 273
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
L +GLGLG + + S AL +W +V N ++GGE T + V+++GL L QAA
Sbjct: 274 RGGLAKGLGLGSMHSVLFLSWALLIWFTSVVVHKNISNGGESFTTMLNVVIAGLSLGQAA 333
Query: 269 TNFYSFDQGRIAAYRLYEMISRSS--STTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPI 326
N +F + R AAY +++MI R++ ++ G TLPSV G+I+FR+V F+Y SRP++ I
Sbjct: 334 PNISTFLRARTAAYPIFQMIERNTVNKASSKAGRTLPSVDGHIQFRDVRFAYPSRPDVVI 393
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
L F L PA K VALVG +GSGKS+++ L+ERFY+P G VLLDG +IK+L ++WLR Q
Sbjct: 394 LDRFSLDFPAGKIVALVGGSGSGKSTVVSLIERFYEPLTGAVLLDGHDIKDLDVKWLRQQ 453
Query: 387 IGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
IGLV QEPAL + SIR+NI YG+ DA++D+I AAK++ A TFI+ L YETQVG G+
Sbjct: 454 IGLVNQEPALFATSIRENILYGKGDASMDEINHAAKLSEAITFINHLPDRYETQVGERGI 513
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
L+ QK +++I+RA+L NPSILLLDE T LD E+E++VQEALD +M+GR+T++IA RL
Sbjct: 514 QLSGGQKQRIAISRAILKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVIAHRL 573
Query: 506 SLIRNADYIAVMDEGRLFEMGTHDELLATG-DLYAELLKCEEAAKLPRR 553
S IRNAD IAV+D GR+ E GTH++L+A YA L++ +EAA+L +
Sbjct: 574 STIRNADTIAVVDSGRIVETGTHEQLMANPRSAYASLIQLQEAAQLQNK 622
|
|
| TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1192 (424.7 bits), Expect = 6.8e-243, Sum P(3) = 6.8e-243
Identities = 250/622 (40%), Positives = 375/622 (60%)
Query: 669 SPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWL 728
+P P+ T P E ++T S H V + ++ Q + RL + +W
Sbjct: 609 TPSLPVSTK-PLPELPITETTSSIHQ-------SVNQPDTTKQAKVTVGRLYSMIRPDWK 660
Query: 729 YAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVA 788
Y + G++G+ I GS PL A I + +YY E + EV + ++ C V+TV+
Sbjct: 661 YGLCGTLGSFIAGSQMPLFALGIAQALVSYYMDWET--TQNEVKRISILFCCGSVITVIV 718
Query: 789 NFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAF 848
+ ++H FGIMGE++T RVR+ MFSA+LRNE+GWFD+ +N++ L+ RL +DAT +R
Sbjct: 719 HTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLESDATLLRTIV 778
Query: 849 SNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKM 908
+R +I +++ V+ A II +L WRL LV LAT P++ I++K+++ G+ + K
Sbjct: 779 VDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHISEKIFMQGYGGNLSKA 838
Query: 909 HRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLL 968
+ KA+++ +++ NI TVVAFCA KV++LY +L + +SF G G +G SQF +
Sbjct: 839 YLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMAGILYGVSQFFI 898
Query: 969 FACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVF 1028
F+ L LWY + G + +K +MV + E LAP +LK + ++SVF
Sbjct: 899 FSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLLKGNQMVVSVF 958
Query: 1029 EIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNXXXXXXXX 1088
E++DR ++ D + NV G+IELK V F YPSRP+V + S+F+L V
Sbjct: 959 ELLDRRTQVVGDTGEELS--NVEGTIELKGVHFSYPSRPDVTIFSDFNLLVPSGKSMALV 1016
Query: 1089 XXXXXXXXXXXXLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRE 1148
L+ RFYDP AG +++DG+D+K L+ LR H+GLVQQEP +F+TTI E
Sbjct: 1017 GQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQEPALFATTIYE 1076
Query: 1149 NIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208
NI+Y + ASE+EV EAA++ANAH FISSLP GY T VG RG+ ++ GQ+QRIAIAR VL
Sbjct: 1077 NILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQRQRIAIARAVL 1136
Query: 1209 KNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGR 1268
KN ILLLD RVVQ+ALD L M ++TT+++AHR + +++ D I V+ G+
Sbjct: 1137 KNPEILLLDEATSALDVESERVVQQALDRL-MRDRTTVVVAHRLSTIKNSDMISVIQDGK 1195
Query: 1269 IVEEGTHDSLLA-KNGLYVRLM 1289
I+E+G+H+ L+ KNG Y +L+
Sbjct: 1196 IIEQGSHNILVENKNGPYSKLI 1217
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| TAIR|locus:2010464 ABCB13 "ATP-binding cassette B13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1174 (418.3 bits), Expect = 6.3e-238, Sum P(3) = 6.3e-238
Identities = 248/633 (39%), Positives = 367/633 (57%)
Query: 659 RQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQKAPS--F 716
++T + S +S S + S + SR S K + ++SK + S
Sbjct: 608 QETEPQENSRSIMSETCKSQAGSSSSRRVSSSRRTSSFRVDQEKTKNDDSKKDFSSSSMI 667
Query: 717 WRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCL 776
W L +L+ EW YA+LGSIGA + G+ PL + I ++TA+Y P + ++ +V K +
Sbjct: 668 WELIKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFP-NVIKRDVEKVAI 726
Query: 777 IIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMR 836
I A G+VT LQH+++ +MGE++T RVR +FSA+L NE+GWFD +EN+ +L+
Sbjct: 727 IFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSI 786
Query: 837 LANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKL 896
LA DAT VR+A ++RLS +Q+ + + A+ + WR+A V A P+L +++ ++L
Sbjct: 787 LAADATLVRSALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQL 846
Query: 897 WLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMA 956
+L GF + + +A+ V +A+ NI TV A+ A ++ E + +L K +F+ G
Sbjct: 847 FLKGFGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHI 906
Query: 957 IGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPY 1016
GF +G SQFL F AL LWY + + ++K +MV F++ E L P
Sbjct: 907 SGFGYGLSQFLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPD 966
Query: 1017 ILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFS 1076
I+K ++L SVF ++ R KI PD ++ V G IE +NV F YP+RPE+ + N +
Sbjct: 967 IVKGTQALGSVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLN 1026
Query: 1077 LKVNXXXXXXXXXXXXXXXXXXXXLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQ 1136
L+V+ LI RFYDP G + +DG+D+K NLR LR L LVQ
Sbjct: 1027 LRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQ 1086
Query: 1137 QEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196
QEP +FSTTI ENI Y NASEAE+ EAA+ ANAH FI + GY TH G +GV L+ G
Sbjct: 1087 QEPALFSTTIYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGG 1146
Query: 1197 QKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMR 1256
QKQR+AIAR VLK+ +LLLD ++VQEALD L+ G +TT+L+AHR + +R
Sbjct: 1147 QKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKG-RTTVLVAHRLSTIR 1205
Query: 1257 HVDNIVVLNGGRIVEEGTHDSLLA-KNGLYVRL 1288
D + VL+ GR+VE+G+H L++ NG Y +L
Sbjct: 1206 KADTVAVLHKGRVVEKGSHRELVSIPNGFYKQL 1238
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8LPT1 | AB6B_ARATH | No assigned EC number | 0.8637 | 0.9777 | 0.9054 | no | no |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3213 | 0.9194 | 0.8795 | yes | no |
| P34712 | PGP1_CAEEL | 3, ., 6, ., 3, ., 4, 4 | 0.3092 | 0.8818 | 0.8697 | yes | no |
| Q9M3B9 | AB20B_ARATH | No assigned EC number | 0.8709 | 0.9754 | 0.9026 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pm.C_LG_X0835 | multidrug/pheromone exporter, MDR family, ABC transporter family (1397 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1303 | |||
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-122 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-121 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-113 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-107 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-107 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-105 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-104 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-102 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-101 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-98 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-98 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-93 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-89 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-88 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-86 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 9e-85 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-84 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-83 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-81 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-77 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-74 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-73 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-73 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-73 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 8e-71 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-71 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-70 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-68 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-68 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-66 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-65 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-63 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-62 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-62 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 9e-61 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-60 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-59 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-58 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-58 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-57 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-56 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-56 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-55 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-54 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-53 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-52 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-52 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-52 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-50 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-49 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-49 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-49 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-49 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 6e-47 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-47 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-46 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-46 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-45 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-45 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-45 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-45 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-44 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-44 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-44 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-44 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-43 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-41 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-39 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-39 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-38 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-38 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-36 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-36 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-35 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-34 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 6e-34 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-34 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-33 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 8e-33 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-32 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-32 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-32 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-31 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-31 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-30 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-30 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-30 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-30 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-30 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-30 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-30 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-29 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-29 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-29 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-29 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-29 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 7e-29 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 8e-29 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-28 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-28 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-28 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-28 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-28 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-28 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-28 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-28 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-27 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-27 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-27 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-27 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-27 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-27 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-27 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-27 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-27 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-26 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-26 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-26 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-26 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-26 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-26 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-26 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-26 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-26 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-26 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-26 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-26 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-26 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-26 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-25 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-25 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-25 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-25 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-25 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-25 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 5e-25 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-25 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-24 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-24 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-24 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 5e-24 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-24 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-23 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-23 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-23 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-23 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-23 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-23 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-23 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-23 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-23 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-22 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-22 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-22 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-22 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-22 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-22 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-22 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-22 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-22 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-22 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-22 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-22 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-22 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-22 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-22 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-22 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-22 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-22 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-21 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-21 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-21 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-21 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-21 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-21 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-21 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-21 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-21 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-21 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-21 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-21 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-21 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-21 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-20 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-20 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-20 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-20 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-20 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-20 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-20 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-20 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-20 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-20 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-20 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-20 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-20 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 9e-20 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-19 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-19 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-19 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-19 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-19 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-19 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-19 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-19 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-19 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-19 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-19 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-19 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-19 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-19 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-19 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-19 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-19 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-19 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-19 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-19 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-19 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 7e-19 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-19 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-18 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-18 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-18 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-18 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-18 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-18 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-18 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-18 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-18 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-18 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-18 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-18 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-18 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 7e-18 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-18 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 8e-18 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-17 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-17 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-17 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-17 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-17 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-17 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-17 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-17 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-17 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-17 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-17 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-17 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-17 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-17 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-17 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-17 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 9e-17 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-17 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-16 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-16 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-16 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-16 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-16 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-16 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-16 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-16 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-16 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-16 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-16 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-16 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 7e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-16 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-16 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-16 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-15 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-15 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-15 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-15 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-15 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-15 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-15 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-15 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-15 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-15 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-15 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-15 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-15 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-15 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-15 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-15 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-15 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-15 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-15 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 7e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 8e-15 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-14 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-14 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-14 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-14 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-14 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-14 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-14 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-14 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-14 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-14 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-14 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-14 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-14 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-14 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-14 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-14 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-14 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-14 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-14 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 8e-14 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 8e-14 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 9e-14 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 9e-14 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 9e-14 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-13 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-13 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-13 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-13 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-13 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-13 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-13 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-13 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-13 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-13 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-13 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-13 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-13 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-13 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-13 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-13 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-13 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-13 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-13 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 8e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 9e-13 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 9e-13 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-12 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-12 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-12 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-12 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-12 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-12 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-12 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-12 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-12 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-12 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-12 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-12 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-12 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-12 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 5e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-12 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-12 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-12 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 9e-12 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-11 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-11 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-11 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-11 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-11 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-11 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-11 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-11 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-11 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-11 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-11 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-11 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 9e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-10 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-10 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-10 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-10 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-10 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-10 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-10 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-10 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 7e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 8e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-10 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 9e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-09 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-09 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-09 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-09 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-09 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 7e-09 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 8e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 9e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-08 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-08 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-08 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 6e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 7e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 7e-08 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 8e-08 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 9e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-07 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-07 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-07 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-07 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-07 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 8e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-07 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 1e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-06 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-06 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 3e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-06 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 4e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-06 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 8e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 8e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-05 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 1e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-04 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 4e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-04 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-04 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 6e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 8e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 0.001 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.001 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.002 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 0.002 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.002 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.002 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.002 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.003 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.004 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 391 bits (1005), Expect = e-122
Identities = 188/580 (32%), Positives = 312/580 (53%), Gaps = 24/580 (4%)
Query: 715 SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKW 774
RL + + L +L + + + LL +IG I+ A E+ +
Sbjct: 3 LLRRLLKYLKYKLL--LLAILLLLLSALLSLLLPLLIGRIIDALLAD------LGELLEL 54
Query: 775 CLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLS 834
L++ + ++ V LQ + +G+K+ +RR +F +LR + +FD+ + L
Sbjct: 55 LLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLI 112
Query: 835 MRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQ 894
RL ND V S L + +I ++++ L WRLAL+ L LP+L+L
Sbjct: 113 SRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL 172
Query: 895 KLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHG 954
SR +++ + + L +++ I + AF A ++ ++ + +++ +
Sbjct: 173 ARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS 232
Query: 955 MAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFG-- 1012
L L+L G V G + + F L+ P
Sbjct: 233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGA----LAAFILYLLRLLTPILQL 288
Query: 1013 --LAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVL 1070
+ + + + +FE++D P+++ + GSIE +NV F YP +
Sbjct: 289 GEVVSLLQRASAAAERLFELLDEEPEVEDPP---DPLKDTIGSIEFENVSFSYPGKK--P 343
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
VL + S + G+ VA+VG SGSGKST+I L+ R YDP +G++L+DG D++ +L LR
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK 403
Query: 1131 HLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRG 1190
+G+V Q+P++FS TIRENI R +A++ E++EA ++ANAH FI++LP GYDT VG RG
Sbjct: 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERG 463
Query: 1191 VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250
V+L+ GQ+QR+AIAR +L+N PIL+LDEA+S++++E+ ++Q+AL L + +TT++IAH
Sbjct: 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKL-LKGRTTLIIAH 522
Query: 1251 RAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290
R + +++ D I+VL+ GRIVE GTH+ LLAK GLY RL Q
Sbjct: 523 RLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQ 562
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 376 bits (967), Expect = e-121
Identities = 136/237 (57%), Positives = 184/237 (77%), Gaps = 1/237 (0%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE KNV F YPSRP+V +L SL + G+TVA+VG SG GKST++SL+ERFYDP +G++
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
LLDG D++ NLRWLR+ +GLV QEP++F TI ENI Y + +A++ EV+EAA+ AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
FI SLP GYDT VG RG L+ GQKQRIAIAR +L+N ILLLDEA+S++++ES ++VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1234 ALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290
ALD + G +TTI+IAHR + +R+ D I VL G++VE+GTHD L+A+ G+Y +L++
Sbjct: 181 ALDRAMKG-RTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 366 bits (941), Expect = e-113
Identities = 182/536 (33%), Positives = 289/536 (53%), Gaps = 8/536 (1%)
Query: 14 KFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVL 73
+ +D L EL L ++ +A ++ G++ A +R + L
Sbjct: 39 RIID---ALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKL 95
Query: 74 LNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQI 133
L +SFFD + GD++S++ +DV + + +S + ++ L + F W++
Sbjct: 96 LRLPLSFFDKAKS-GDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRL 154
Query: 134 ALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK 193
ALI L P + + +L+ +++A E + +++S IR + AF E
Sbjct: 155 ALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDREL 214
Query: 194 YSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTA 253
+ + + R + S ++ L L+ L L +G FLV G +
Sbjct: 215 KRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAF 274
Query: 254 LFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRN 313
+ ++ + Q + AA RL+E++ + + L G+IEF N
Sbjct: 275 ILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPP-DPLKDTIGSIEFEN 333
Query: 314 VYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE 373
V FSY + P+L ++ + VA+VG +GSGKS++I L+ R YDPT GE+L+DG
Sbjct: 334 VSFSY--PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGI 391
Query: 374 NIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSL 432
+I+++ L+ LR +IG+V+Q+P L S +IR+NIA GR DAT ++IEEA K+A+AH FI++L
Sbjct: 392 DIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANL 451
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492
GY+T VG G+ L+ Q+ +L+IARA+L NP IL+LDE T LD E E +Q+AL L
Sbjct: 452 PDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKL 511
Query: 493 MLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAA 548
+ GR+T+IIA RLS I+NAD I V+D GR+ E GTH+ELLA G LYA L + + A
Sbjct: 512 LKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 336 bits (864), Expect = e-107
Identities = 140/236 (59%), Positives = 178/236 (75%), Gaps = 1/236 (0%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF+NV F Y SRP++PIL G LT+P K VALVG +G GKS+++ L+ERFYDPT GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427
LLDG +I++L L WLRSQIGLV+QEP L +I +NI YG+ DAT +++EEAAK A+ H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487
FI SL GY+T VG G L+ QK +++IARA+L NP ILLLDE T LD E+E+ VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 488 ALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543
ALD M GR+TI+IA RLS IRNAD IAV+ G++ E GTHDEL+A +YA+L+K
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 350 bits (899), Expect = e-107
Identities = 183/527 (34%), Positives = 293/527 (55%), Gaps = 30/527 (5%)
Query: 777 IIACMGVVTVV---ANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTL 833
A + VV +V + + +GE++ +RR +F+ ++ +FD+ N + +
Sbjct: 60 YFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK--NRSGEV 117
Query: 834 SMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIA 893
RL D T +++ + LS+ ++++ I +I+ + +L + L +P++ L +
Sbjct: 118 VSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILL 177
Query: 894 QKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCA--------GNKVMELYRLQLKK 945
+ SR Q A + + I TV AF G V + Y ++
Sbjct: 178 FGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQR 237
Query: 946 IFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSF--- 1002
I T++ L + I L+F +LW V G M L +++ ++
Sbjct: 238 IRTRALLTAIVI--------VLVFGAIVGVLWVGAHDVIAGKMS-AGTLGQFVFYAVMVA 288
Query: 1003 -ATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDF 1061
+ L E +G + + + + E++ P I P + G IE + V+F
Sbjct: 289 GSIGTLSEVWG---ELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNF 345
Query: 1062 CYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLK 1121
YP+RP+ L +L V G+TVA+VG SG+GKST+ L+ RFYDP +G++LLDG DL+
Sbjct: 346 AYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405
Query: 1122 LYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHG 1181
+ LR + LV Q+P++F+ ++ ENI Y R +A++ EV+ AAR A+AH FIS+LP G
Sbjct: 406 QLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
YDT++G RGV L+ GQ+QRIAIAR +LK+APILLLDEA+S++++ES ++VQ+AL+TL M
Sbjct: 466 YDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL-MK 524
Query: 1242 NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288
+TT++IAHR A + D IVV++ GRIV +GTH L+AK GLY RL
Sbjct: 525 GRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARL 571
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 345 bits (888), Expect = e-105
Identities = 174/487 (35%), Positives = 268/487 (55%), Gaps = 4/487 (0%)
Query: 58 GERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117
GER A IR L++ SFFD +G++VS++ +D L+QS + + + N
Sbjct: 86 GERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNAL 144
Query: 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAV 177
GL + F+ ++ + L P ++ + + +L+ QD A+A S A + +
Sbjct: 145 MCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETL 204
Query: 178 SYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGR 237
IRT+ AF +E + + +++ + L L + LWVG
Sbjct: 205 GAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGA 264
Query: 238 FLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMI-SRSSSTTN 296
V K G + +F ++ + + + + AA RL E++ +
Sbjct: 265 HDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324
Query: 297 YDGNTLPS-VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355
TLP + G IEF V F+Y +RP+ P L G LTV + VALVG +G+GKS++
Sbjct: 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQ 384
Query: 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLD 414
L+ RFYDP G +LLDG +++ L LR+++ LV Q+P L + S+ +NI YGR DAT +
Sbjct: 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDE 444
Query: 415 QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474
++E AA+ AHAH FIS+L +GY+T +G G+ L+ Q+ +++IARA+L + ILLLDE T
Sbjct: 445 EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504
Query: 475 GGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534
LD E+E+ VQ+AL+ LM GR+T+IIA RL+ + AD I VMD+GR+ GTH EL+A
Sbjct: 505 SALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564
Query: 535 GDLYAEL 541
G LYA L
Sbjct: 565 GGLYARL 571
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 328 bits (844), Expect = e-104
Identities = 127/235 (54%), Positives = 171/235 (72%), Gaps = 2/235 (0%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E KNV F YP VL + SL + G+TVA+VG SGSGKST+++LI RFYD +G++
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
L+DG D++ Y L LR +GLV Q+ +F+ T+ ENI Y R A+ EV+EAAR ANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
FI LP GYDT +G RGV L+ GQ+QRIAIAR +LK+ PIL+LDEA+S++++ES R+VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1234 ALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288
AL+ L M N+TT +IAHR + + + D IVVL G+IVE GTH+ LLA+ G+Y +L
Sbjct: 180 ALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 337 bits (867), Expect = e-102
Identities = 189/593 (31%), Positives = 301/593 (50%), Gaps = 42/593 (7%)
Query: 715 SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKW 774
+F RL VL + + + LA ++ ++ + +R L W
Sbjct: 1 TFRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVL------W 54
Query: 775 CLIIACMGVVTV--VANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADT 832
+ + +G+ + + +F+ + + K+ +R MF +L V +FD T
Sbjct: 55 WVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGT 112
Query: 833 LSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAI 892
L R+ D+ V +A ++ + ++++ VI I+ + W+L L+ + LP+LS+
Sbjct: 113 LLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMR 172
Query: 893 AQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAG--------NKVMELYRLQLK 944
L S+ IQ + + V E+ ++ Y VV G + V R
Sbjct: 173 RVSKRLRRISKEIQNSMGQVTTVAEETLQG-YRVVKLFGGQAYETRRFDAVSNRNRRLAM 231
Query: 945 KIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFAT 1004
K+ + + +Q + A++L+ + G ++ F A
Sbjct: 232 KMTSAGSISS-------PITQLIASLALAVVLFIALFQAQAGS----LTAGDFTAFITAM 280
Query: 1005 FALVEPF-GLAPYILKRRKSLI---SVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVD 1060
AL+ P L ++ L S+F ++D P+ D + G +E +NV
Sbjct: 281 IALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD---TGTRAIERARGDVEFRNVT 337
Query: 1061 FCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL 1120
F YP R + L + SL + G+TVA+VG SGSGKST+++LI RFY+P +GQ+LLDG DL
Sbjct: 338 FRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396
Query: 1121 KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYAR-HNASEAEVKEAARIANAHHFISSLP 1179
Y L LR + LV Q+ ++F+ TI NI Y R A AE++ A A A F+ LP
Sbjct: 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLP 456
Query: 1180 HGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI 1239
G DT +G GV L+ GQ+QR+AIAR +LK+APIL+LDEA+S++++ES R+VQ AL+ L
Sbjct: 457 LGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL- 515
Query: 1240 MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL--MQ 1290
M +TT++IAHR + + D IVV++ GRIVE GTH+ LLA+NGLY +L MQ
Sbjct: 516 MQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 337 bits (866), Expect = e-101
Identities = 175/588 (29%), Positives = 301/588 (51%), Gaps = 19/588 (3%)
Query: 704 REEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEE 763
+ +S+ A +RL LS +W + + + + + + G ++ +
Sbjct: 139 EQGQSE--TADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG 196
Query: 764 RHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWF 823
L + + + + + V+ L+ F ++ R+R +F ++LR ++G+F
Sbjct: 197 PPALASAI----FFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFF 252
Query: 824 DEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALAT 883
DE N L+ RL++D + + S +++ +++ ++ + + L RL +V L
Sbjct: 253 DE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLIN 310
Query: 884 LPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQL 943
LP++ L+ S +Q+ KA+ V E+A+ + TV +F A ++ L
Sbjct: 311 LPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEAL 370
Query: 944 KKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYM---DLPTALKEYMVF 1000
++ + +A + L L+L+Y G+ V G + +L + L
Sbjct: 371 EETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQL 430
Query: 1001 SFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVD 1060
A L + +++ + VFE +DR P I + A P N+ G IE ++V
Sbjct: 431 GEAVRVLSY---VYSGMMQAVGASEKVFEYLDRKPNIPLTGTLA--PLNLEGLIEFQDVS 485
Query: 1061 FCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL 1120
F YP+RP+V VL + ++ G+ VA+VG SGSGKST+ +L++ Y P GQVLLDG L
Sbjct: 486 FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL 545
Query: 1121 KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPH 1180
Y+ +L + LV QEP++FS ++RENI Y + + E+ AA+ ANAH FI P+
Sbjct: 546 VQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPN 605
Query: 1181 GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM 1240
GYDT VG +G L+ GQKQRIAIAR +++ +L+LDEA+S++++E +++QE+
Sbjct: 606 GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRS---R 662
Query: 1241 GNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288
++T +LIAHR + + D I+VL G +VE GTH L+ G Y L
Sbjct: 663 ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 329 bits (845), Expect = 6e-98
Identities = 170/592 (28%), Positives = 287/592 (48%), Gaps = 21/592 (3%)
Query: 706 EESKHQKAP-SFWRLAELSFAEW---LYAVLGSIGAAIFGSFNPLLA-YVIGLIVTAYYK 760
P L F +L S+ + PL + VI ++
Sbjct: 131 SRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLP---- 186
Query: 761 PEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEV 820
R + + + + + L+ + +G+++ + F +LR +
Sbjct: 187 ----DASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPL 242
Query: 821 GWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVA 880
+F E+ S + R+ + +R + + I D ++ + + L W+L L+
Sbjct: 243 SYF--EKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIV 299
Query: 881 LATLPILSL-SAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELY 939
LA +P+ L + I Q L + I++ + S ++E ++ I TV A A + +
Sbjct: 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVE-TIKGIETVKALAAEPRFRSQW 358
Query: 940 RLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMV 999
+L K F L + L+LW+ V +G + L + M+
Sbjct: 359 DNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNML 418
Query: 1000 FSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNV 1059
+ + L + + +L + +I+D P+ D + + P + G IE +NV
Sbjct: 419 AGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE-QEGDKTLIHLPKLQGEIEFENV 477
Query: 1060 DFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRD 1119
F Y + VL + SL++ G+ VA+VG SGSGKST++ L+ Y P G++LLDG D
Sbjct: 478 SFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 1120 LKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLP 1179
L +L LR +G V Q+P +FS +IRENI A++ E+ EAA++A AH FI +LP
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 1180 HGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI 1239
GYDT VG G +L+ GQ+QR+A+AR +L ILLLDEA+S+++ E+ ++ + L ++
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 1240 MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQP 1291
+T I+IAHR + +R D I+VL+ G+IVE+G+H+ LLA+ GLY RL Q
Sbjct: 657 -QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ 707
|
Length = 709 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 328 bits (843), Expect = 9e-98
Identities = 170/549 (30%), Positives = 274/549 (49%), Gaps = 15/549 (2%)
Query: 2 LNLKYIWGFPVPKF----VDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILT 57
L L + +P + +D L G S + + +AG + + T
Sbjct: 170 LTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAG-LRGGSFNYT 228
Query: 58 GERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117
R IR + LL QD+ FFD G++ S++ SD + +LS V + N+
Sbjct: 229 MARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLV 287
Query: 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAV 177
L ++ ++TL P + A + L+E +Q+A A+A +AE+A+
Sbjct: 288 MLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEAL 347
Query: 178 SYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQ---LW 234
S +RT+ +F E + +L+ TL+ +L G+ + ++ +Q L+
Sbjct: 348 SGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAY---AGYLWTTSVLGMLIQVLVLY 404
Query: 235 VGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSST 294
G LV K G +V+ L G + + + Q A+ +++E + R +
Sbjct: 405 YGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNI 464
Query: 295 TNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSII 354
++ G IEF++V FSY +RP++P+L G T+ + VALVG +GSGKS++
Sbjct: 465 PLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVA 524
Query: 355 PLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG-RDATL 413
L++ Y PT G+VLLDG + +L Q+ LV QEP L S S+R+NIAYG D
Sbjct: 525 ALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD 584
Query: 414 DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473
++I AAK A+AH FI GY+T+VG G L+ QK +++IARA++ P +L+LDE
Sbjct: 585 EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEA 644
Query: 474 TGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA 533
T LD E E+ +QE+ R+ ++IA RLS + AD I V+ +G + EMGTH +L+
Sbjct: 645 TSALDAECEQLLQESRSR--ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702
Query: 534 TGDLYAELL 542
Y L+
Sbjct: 703 DQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 298 bits (766), Expect = 4e-93
Identities = 111/232 (47%), Positives = 170/232 (73%), Gaps = 3/232 (1%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
G IE +NV+F Y + VL + + + G+TVA+VG +G+GK+T+I+L+ RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANA 1171
Q+L+DG D++ + + LR+ +G+V Q+ +FS TI ENI R NA++ EV EAA+ A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
H FI LP+GYDT +G G +L+ G++Q +AIAR +L++ IL+LDEA+S+I++E+ +++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1232 QEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNG 1283
QEAL+ L M +T+I+IAHR + +++ D I+VL+ G+I+EEGTHD LLAK G
Sbjct: 179 QEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 287 bits (736), Expect = 7e-89
Identities = 114/234 (48%), Positives = 165/234 (70%), Gaps = 2/234 (0%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+EF+NV F Y P+L L +PA + VALVG +GSGKS+++ L+ RFYD G +
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427
L+DG ++++ L LR QIGLV+Q+ L + ++ +NIAYGR AT +++EEAA+ A+AH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487
FI L +GY+T +G G+ L+ Q+ +++IARA+L +P IL+LDE T LD E+ER VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 488 ALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
AL+ LM R+T +IA RLS I NAD I V+++G++ E GTH+ELLA G +YA+L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 284 bits (730), Expect = 5e-88
Identities = 115/237 (48%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE +NV F Y P VL + S + G+ VA+VG SGSGKSTI+ L+ RFYD +G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
L+DG+D++ L LR +G+V Q+ ++F+ TI NI Y R +A++ EV EAA+ A H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
I P GYDT VG RG+ L+ G+KQR+AIAR +LKN PILLLDEA+S++++ + R +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 1234 ALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290
AL + +TTI+IAHR + + + D I+VL GRIVE GTH+ LLAK GLY + +
Sbjct: 179 ALRDVS-KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 2e-86
Identities = 110/231 (47%), Positives = 158/231 (68%), Gaps = 3/231 (1%)
Query: 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
G IEF NV FSY + P+L ++ + VA+VG G+GK+++I L+ RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHA 425
++L+DG +I+++ + LRS IG+V Q+ L S +I +NI GR +AT +++ EAAK A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
H FI L GY+T +G G L++ ++ L+IARA+L +P IL+LDE T +D E E+ +
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536
QEAL+ LM GR++IIIA RLS I+NAD I V+D+G++ E GTHDELLA
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 9e-85
Identities = 170/492 (34%), Positives = 257/492 (52%), Gaps = 33/492 (6%)
Query: 67 SRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIA 126
R+ + LL +S+F+ + G+I+S+V ++ I+ L+ + I ++ LA+
Sbjct: 231 GRFFRHLLRLPLSYFEKR-SVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVM 288
Query: 127 FVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAF 186
F+ W++ LI L P V I L R + + AE S + + I T+ A
Sbjct: 289 FLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKAL 348
Query: 187 TNE---------TLAKYSYAT--SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWV 235
E LAK + + L + SL+Q L + I LW
Sbjct: 349 AAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLS-----SVLI------LWF 397
Query: 236 GRFLVTHNKAHGGEIVTALFAVILSGL---GLNQAATNFYSFDQGRIAAYRLYEMISRSS 292
G LV + G++V +L+G + + + + F Q ++A RL +++
Sbjct: 398 GAILVLEGELTLGQLV---AFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP 454
Query: 293 STTNYDGN-TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKS 351
LP + G IEF NV F Y P+L L +P + VA+VGR+GSGKS
Sbjct: 455 EQEGDKTLIHLPKLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKS 513
Query: 352 SIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-D 410
+++ L+ Y P G +LLDG ++ ++ L LR Q+G V Q+P L S SIR+NIA G +
Sbjct: 514 TLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE 573
Query: 411 ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLL 470
AT ++I EAA++A AH FI +L GY+T VG G L+ Q+ +L++ARA+L P ILLL
Sbjct: 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633
Query: 471 DEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDE 530
DE T LD E E + + L ++ GR+ IIIA RLS IR+AD I V+D+G++ E G+H+E
Sbjct: 634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693
Query: 531 LLATGDLYAELL 542
LLA G LYA L
Sbjct: 694 LLAQGGLYARLY 705
|
Length = 709 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 1e-84
Identities = 187/547 (34%), Positives = 290/547 (53%), Gaps = 68/547 (12%)
Query: 776 LIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSM 835
L++ + ++ + +F+ + + K+ +RR +F M+ V +FD+ S TL
Sbjct: 69 LVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLS 126
Query: 836 RLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQK 895
R+ D+ V ++ S L +++ A++I I+ W+L+L+ + PI+S++
Sbjct: 127 RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAI---- 182
Query: 896 LWLAGFSRGIQKMHRKASLVLEDAVRNIYTVV-AFCAGNKVMELYRLQLKKIFTKSFLH- 953
R + K R S +++ + + T G+K + ++ Q ++ TK F
Sbjct: 183 -------RVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQ--EVETKRFDKV 233
Query: 954 -------GMAIGFAFGFS----QFLL-FACNALLLWYTGKSVRDGYMDLPTALKEYMVFS 1001
GM + A S Q + A +L + SV MD TA +VFS
Sbjct: 234 SNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSV----MDTLTAGTITVVFS 289
Query: 1002 FATFALVEPFGLAPYILKRRKSLISV--------------FEIIDRVPKIDPD-DSSAVK 1046
+ AL+ P KSL +V F I+D ++ + D
Sbjct: 290 -SMIALMRPL----------KSLTNVNAQFQRGMAACQTLFAILD----LEQEKDEGKRV 334
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
G IE +NV F YP + EV L N + K+ G+TVA+VG SGSGKSTI +L+ RFY
Sbjct: 335 IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNA-SEAEVKEA 1165
D G++LLDG DL+ Y L LRN + LV Q +F+ TI NI YAR S +++EA
Sbjct: 394 DIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEA 453
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
AR+A A FI+ + +G DT +G GV L+ GQ+QRIAIAR +L+++PIL+LDEA+S++++
Sbjct: 454 ARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLY 1285
ES R +Q ALD L N+T+++IAHR + + D I+V+ G IVE GTH LLA+NG+Y
Sbjct: 514 ESERAIQAALDEL-QKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572
Query: 1286 VRL--MQ 1290
+L MQ
Sbjct: 573 AQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 271 bits (696), Expect = 2e-83
Identities = 118/234 (50%), Positives = 157/234 (67%), Gaps = 3/234 (1%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF NV F+Y P P+L T+PA K VA+VG +GSGKS+I+ L+ RFYD + G +
Sbjct: 1 IEFENVTFAY--DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427
L+DG++I+ + L+ LR IG+V Q+ L + +I NI YGR DAT +++ EAAK A H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487
I GY+T VG GL L+ +K +++IARA+L NP ILLLDE T LD ER +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 488 ALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
AL + GR+TI+IA RLS I NAD I V+ +GR+ E GTH+ELLA G LYAE+
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 278 bits (712), Expect = 3e-81
Identities = 159/481 (33%), Positives = 248/481 (51%), Gaps = 9/481 (1%)
Query: 65 IRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLA 124
IR R + LL +SFFD G ++S++ D + SA ++ + T
Sbjct: 89 IRVRMFEKLLGLPVSFFDR-QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFI 147
Query: 125 IAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLY 184
+ WQ+ LI + P + + L R+++ IQ++ + ++AE+ + R +
Sbjct: 148 VLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVK 207
Query: 185 AFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNK 244
F + + R + ++ + T +A + A+ L++ F
Sbjct: 208 LFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGS 267
Query: 245 AHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNT--L 302
G+ + A+I L +G AA L+ ++ S D T +
Sbjct: 268 LTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLD---SPPEKDTGTRAI 324
Query: 303 PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362
G++EFRNV F Y R + P L L + + VALVGR+GSGKS+++ L+ RFY+
Sbjct: 325 ERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE 383
Query: 363 PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLD--QIEEAA 420
P G++LLDG ++ + L LR Q+ LV+Q+ L + +I +NIAYGR D +IE A
Sbjct: 384 PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERAL 443
Query: 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
A+A F+ L G +T +G G+ L+ Q+ +L+IARA+L + IL+LDE T LD E
Sbjct: 444 AAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503
Query: 481 AERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540
+ER VQ AL+ LM GR+T++IA RLS I AD I VMD+GR+ E GTH+ELLA LYA+
Sbjct: 504 SERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQ 563
Query: 541 L 541
L
Sbjct: 564 L 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 266 bits (681), Expect = 7e-77
Identities = 112/263 (42%), Positives = 172/263 (65%), Gaps = 8/263 (3%)
Query: 1028 FEIIDRVPKI-DPDDSSAVKPPNVYGSIELKNVDFCYP-SRPEVLVLSNFSLKVNGGQTV 1085
FE+ D VP + DP A+ V G++E +V F Y SR V + S + GQTV
Sbjct: 310 FEVEDAVPDVRDPPG--AIDLGRVKGAVEFDDVSFSYDNSRQGV---EDVSFEAKPGQTV 364
Query: 1086 AVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTT 1145
A+VG +G+GKST+I+L++R +DP +G++L+DG D++ LR ++ +V Q+ +F+ +
Sbjct: 365 AIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRS 424
Query: 1146 IRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205
I +NI R +A++ E++ AA A AH FI P GYDT VG RG L+ G++QR+AIAR
Sbjct: 425 IEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIAR 484
Query: 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLN 1265
+LK+ PIL+LDEA+S+++ E+ V+ ALD L M +TT +IAHR + +R+ D I+V +
Sbjct: 485 ALLKDPPILILDEATSALDVETEAKVKAALDEL-MKGRTTFIIAHRLSTVRNADRILVFD 543
Query: 1266 GGRIVEEGTHDSLLAKNGLYVRL 1288
GR+VE G+ D L+A+ G + L
Sbjct: 544 NGRVVESGSFDELVARGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 2e-74
Identities = 161/497 (32%), Positives = 261/497 (52%), Gaps = 41/497 (8%)
Query: 65 IRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLA 124
+R R ++ +SFFD + G ++S++ D + S+ S + + A+
Sbjct: 100 MRRRLFGHMMGMPVSFFDK-QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFI 158
Query: 125 IAFVNCWQIALITLCTGPFI-VAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTL 183
+ F WQ++LI + P + +A +S F +++N+Q+ + + AEQ + + +
Sbjct: 159 MMFYYSWQLSLILIVIAPIVSIAIRVVSKRF-RNISKNMQNTMGQVTTSAEQMLKGHKEV 217
Query: 184 YAFTNETLAKYSYATSLQATLRYGI-----------LISLVQGLGLGFT-YGLAICSCAL 231
F + + + + G+ +I L+ L L F Y + S
Sbjct: 218 LIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMD 277
Query: 232 QLWVGRFLVTHNKAHGGEIVTALFAVI--LSGLGLNQAATNFYS-FDQGRIAAYRLYEMI 288
L G V + +++ A++ L L TN + F +G A L+ ++
Sbjct: 278 TLTAGTITV---------VFSSMIALMRPLKSL------TNVNAQFQRGMAACQTLFAIL 322
Query: 289 SRSSSTTNYDGNTL--PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN 346
D G+IEFRNV F+Y + E+P L +PA K VALVGR+
Sbjct: 323 D---LEQEKDEGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRS 378
Query: 347 GSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA 406
GSGKS+I L+ RFYD GE+LLDG ++++ L LR+Q+ LV+Q L + +I +NIA
Sbjct: 379 GSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA 438
Query: 407 YGRDA--TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464
Y R + +QIEEAA++A+A FI+ ++ G +T +G G+ L+ Q+ +++IARA+L +
Sbjct: 439 YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD 498
Query: 465 PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFE 524
IL+LDE T LD E+ERA+Q ALD L R++++IA RLS I AD I V+++G + E
Sbjct: 499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVE 558
Query: 525 MGTHDELLATGDLYAEL 541
GTH ELLA +YA+L
Sbjct: 559 RGTHAELLAQNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 260 bits (665), Expect = 1e-73
Identities = 113/254 (44%), Positives = 160/254 (62%), Gaps = 4/254 (1%)
Query: 1038 DPDDSSAVKPPNVYGSIELKNVDFCY-PSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKS 1096
+P + P + G+I +N+ F Y P PEVL SN +L + G+ + +VG SGSGKS
Sbjct: 440 EPRSAGLAALPELRGAITFENIRFRYAPDSPEVL--SNLNLDIKPGEFIGIVGPSGSGKS 497
Query: 1097 TIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN 1156
T+ L++R Y P GQVL+DG DL + + WLR +G+V QE ++FS +IR+NI
Sbjct: 498 TLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557
Query: 1157 ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLL 1216
A V AA++A AH FIS LP GY+T VG +G +L+ GQ+QRIAIAR ++ N IL+
Sbjct: 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617
Query: 1217 DEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHD 1276
DEA+S+++ ES ++ + I +T I+IAHR + +R D I+VL G+I E G H+
Sbjct: 618 DEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHE 676
Query: 1277 SLLAKNGLYVRLMQ 1290
LLA GLY RL Q
Sbjct: 677 ELLALQGLYARLWQ 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 243 bits (623), Expect = 2e-73
Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 4/238 (1%)
Query: 1054 IELKNVDFCY-PSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
I ++V F Y P P +L N SL++ G+ V +VG SGSGKST+ LI+RFY P G+
Sbjct: 1 ITFEHVRFRYKPDGPVIL--DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAH 1172
VL+DG DL L + WLR +G+V QE ++F+ +IR+NI A S V EAA++A AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
FIS LP GYDT VG +G L+ GQ+QRIAIAR ++ N IL+ DEA+S+++ ES +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1233 EALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290
+ I +T I+IAHR + +++ D I+V+ GRIVE+G+HD LLA+NGLY L Q
Sbjct: 179 RNMHD-ICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 9e-73
Identities = 127/317 (40%), Positives = 179/317 (56%), Gaps = 12/317 (3%)
Query: 233 LWVGRFLVTHNKAHGGEIVTAL-FAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS 291
L +G LV + GE+V + FA +L G L+Q F +Q +AA +L E
Sbjct: 258 LVLGAALVQKGQLRVGEVVAFVGFATLLIG-RLDQV-VAF--INQVFMAAPKLEEFFEVE 313
Query: 292 SSTTNY----DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNG 347
+ + L V G +EF +V FSY + + + VA+VG G
Sbjct: 314 DAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTG 371
Query: 348 SGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAY 407
+GKS++I L++R +DP G +L+DG +I+ + LR I +V Q+ L + SI DNI
Sbjct: 372 AGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431
Query: 408 GR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466
GR DAT +++ AA+ A AH FI GY+T VG G L+ ++ +L+IARA+L +P
Sbjct: 432 GRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491
Query: 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526
IL+LDE T LD E E V+ ALD LM GR+T IIA RLS +RNAD I V D GR+ E G
Sbjct: 492 ILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551
Query: 527 THDELLATGDLYAELLK 543
+ DEL+A G +A LL+
Sbjct: 552 SFDELVARGGRFAALLR 568
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 8e-71
Identities = 152/461 (32%), Positives = 239/461 (51%), Gaps = 34/461 (7%)
Query: 842 TFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGF 901
T +R N L ++ S +VAVI+ + W AL L T+ + L + W F
Sbjct: 54 TILRWILFNILPTLVEIS---LVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDF 110
Query: 902 SRGIQKMHRKASLVLEDAVRNIYTVVAFCAG-------NKVMELY-RLQLKKIFTKSFLH 953
R + A+ D++ N TV F + +E Y + +K + L+
Sbjct: 111 RRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLN 170
Query: 954 -GMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPT-ALKEYMVFSFATFALVEPF 1011
G F+ G + + V +G + + ++F + F
Sbjct: 171 FGQTAIFSTGLRVMMTMSALG---------VEEGQLTVGDLVNVNALLFQLSIPLN---F 218
Query: 1012 GLAPYILKRRKSLI---SVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCY-PSRP 1067
Y + R++L +F+++D ++ + P G++ NV F Y P RP
Sbjct: 219 LGFSY-REIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP 277
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW 1127
+L+ S + G+TVA+VG SG+GKSTI+ L+ RFYD +G + +DG+D++ +
Sbjct: 278 ---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS 334
Query: 1128 LRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVG 1187
LR +G+V Q+ ++F+ TI NI Y R +A+ EV AA A H FI SLP GYDT VG
Sbjct: 335 LRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394
Query: 1188 MRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTIL 1247
RG+ L+ G+KQR+AIAR +LKN PIL+LDEA+S++++ + + +Q AL + +TT++
Sbjct: 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR-EVSAGRTTLV 453
Query: 1248 IAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288
IAHR + + D I+VL+ GRIVE GTH+ LLA GLY +
Sbjct: 454 IAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 8e-71
Identities = 103/223 (46%), Positives = 157/223 (70%), Gaps = 1/223 (0%)
Query: 1047 PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106
P ++ G ++ +NV F YP+RP+ LVL + S ++ G+ A+VG SGSGKST+++L+E FY
Sbjct: 5 PDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64
Query: 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
P GQVLLDG+ + Y ++L + + LV QEP++F+ ++++NI Y + S VKEAA
Sbjct: 65 QPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAA 124
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+ A+AH FIS L GYDT VG +G L+ GQKQR+AIAR +++N +L+LDEA+S++++E
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRI 1269
S + VQ+AL +T ++IAHR + + D I+VL+GGRI
Sbjct: 185 SEQQVQQALYDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 9e-70
Identities = 165/530 (31%), Positives = 264/530 (49%), Gaps = 36/530 (6%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
LS LAL ++ +A A G + + R + +R + LL + +F++ G
Sbjct: 178 LSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVG 236
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPF-IVAA 147
D V++V ++ I++ L+ + ++ LA+ F + + + + + +
Sbjct: 237 DTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLS 295
Query: 148 GGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYA------FTN---ETLAKYSYAT 198
+ I R+ + + + A A S ++V+ I T+ A F N LA Y A+
Sbjct: 296 VFVGPILRKRVEDKFERS-AAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAAS 354
Query: 199 --SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVT-ALF 255
G I L+Q L + A+ LW G LV G++V +
Sbjct: 355 FRVTNLGNIAGQAIELIQKL-----------TFAILLWFGAHLVIGGALSPGQLVAFNML 403
Query: 256 AVILSG--LGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRN 313
A ++ L L Q + F Q IA RL ++++ + + LP + G I F N
Sbjct: 404 AGRVTQPVLRLAQL---WQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFEN 460
Query: 314 VYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
+ F Y P+ P +LS L + + + +VG +GSGKS++ L++R Y P G+VL+DG
Sbjct: 461 IRFRY--APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518
Query: 373 ENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431
++ WLR Q+G+V QE L S SIRDNIA A + + AAK+A AH FIS
Sbjct: 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISE 578
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491
L +GY T+VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E + +
Sbjct: 579 LPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638
Query: 492 LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
+ GR+ IIIA RLS +R D I V+++G++ E G H+ELLA LYA L
Sbjct: 639 ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 1e-68
Identities = 109/235 (46%), Positives = 154/235 (65%), Gaps = 4/235 (1%)
Query: 309 IEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I F +V F Y +P+ P IL L + + V +VGR+GSGKS++ L++RFY P G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA-TLDQIEEAAKIAHAH 426
VL+DG ++ WLR Q+G+V QE L + SIRDNIA +++++ EAAK+A AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
FIS L +GY+T VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E A+
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 487 EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
+ + GR+ IIIA RLS ++NAD I VM++GR+ E G+HDELLA LYA L
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 227 bits (582), Expect = 1e-68
Identities = 89/215 (41%), Positives = 125/215 (58%), Gaps = 44/215 (20%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE KNV F YP RP+ VL + SL + G+ VA+VG SGSGKST++ L+ R YDP +G++
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
L+DG DL+ +L LR ++ V Q+P +FS TIRENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
L+ GQ+QRIAIAR +L++ PIL+LDEA+S+++ E+ ++ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 1234 ALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGR 1268
AL L KT I+IAHR + +R D I+VL+ GR
Sbjct: 138 ALRAL-AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 1e-66
Identities = 100/226 (44%), Positives = 152/226 (67%), Gaps = 2/226 (0%)
Query: 299 GNTLPS-VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357
G+ P + G ++F+NV F+Y +RP+ +L T+ + ALVG +GSGKS+++ L+
Sbjct: 1 GSLAPDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL 60
Query: 358 ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG-RDATLDQI 416
E FY P G+VLLDG+ I + ++L S++ LV QEP L + S++DNIAYG + + + +
Sbjct: 61 ENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECV 120
Query: 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
+EAA+ AHAH+FIS L GY+T+VG G L+ QK +++IARA++ NP +L+LDE T
Sbjct: 121 KEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180
Query: 477 LDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRL 522
LD E+E+ VQ+AL R+ ++IA RLS + AD I V+D GR+
Sbjct: 181 LDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 220 bits (564), Expect = 1e-65
Identities = 90/222 (40%), Positives = 140/222 (63%), Gaps = 2/222 (0%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
G IE +NV F YP++ E+ L N SL + G+ VA++G GSGKST++ L+ Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANA 1171
VLLDG D++ + LR ++G V Q+ +F T+R+NI A + + AA +A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
F++ P+G D +G RG L+ GQ+Q +A+AR +L + PILLLDE +S+++ S +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 1232 QEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG 1273
+E L L+ G+KT I+I HR +++ VD I+V++ GRIV +G
Sbjct: 180 KERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 224 bits (573), Expect = 2e-63
Identities = 114/240 (47%), Positives = 160/240 (66%), Gaps = 3/240 (1%)
Query: 303 PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362
P G + F NV F+Y P PIL+G T+P K VA+VG +G+GKS+I+ L+ RFYD
Sbjct: 257 PVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD 314
Query: 363 PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAK 421
G + +DG++I+++ + LR IG+V Q+ L + +I NI YGR DAT +++ AA+
Sbjct: 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAE 374
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
A H FI SL +GY+T VG GL L+ +K +++IAR +L NP IL+LDE T LD
Sbjct: 375 AAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHT 434
Query: 482 ERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
E+A+Q AL + GR+T++IA RLS I +AD I V+D GR+ E GTH+ELLA G LYAE+
Sbjct: 435 EQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 5e-62
Identities = 129/450 (28%), Positives = 209/450 (46%), Gaps = 34/450 (7%)
Query: 859 SAAVIVAVIIGM-LLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKM-----HRKA 912
+ +I V IG+ LAL+ L +L L + F R +K +A
Sbjct: 142 ALVLIAVVTIGLSFFSIPLALLLGLILLLLLL------IIPTLFYRAGRKFGAHLAQGRA 195
Query: 913 SLV--LEDAVRNIYTVVAFCAGNKVMELYR---LQLKKIFTKSFLHGMAIGFAFGFSQFL 967
+L D V+ ++ F A + K K L
Sbjct: 196 ALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGL 255
Query: 968 LFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPF----GLAPYILKR-RK 1022
L LLLW + V G + P A + FA +E F A L +
Sbjct: 256 LVI--GLLLWMAAQ-VGAGALAQPGAA----LALLVIFAALEAFEPLAPGAFQHLGQVIA 308
Query: 1023 SLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGG 1082
S + +I+D+ P++ D + ++EL+NV F YP + L NF+L + G
Sbjct: 309 SARRLNDILDQKPEVTFPDE---QTATTGQALELRNVSFTYPG-QQTKALKNFNLTLAQG 364
Query: 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIF 1142
+ VA++G SGSGKST++ L+ +DP G + L+G ++ + + LR + ++ Q +F
Sbjct: 365 EKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424
Query: 1143 STTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202
S T+R+N+ A +AS+ E+ A + + S P G +T +G G L+ G+++R+A
Sbjct: 425 SGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484
Query: 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIV 1262
+AR +L +AP+ LLDE + ++ + R V L KT +++ HR + +D I+
Sbjct: 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHRLRGLERMDRII 543
Query: 1263 VLNGGRIVEEGTHDSLLAKNGLYVRLMQPH 1292
VL+ G+I+EEGTH LLA NG Y RL Q
Sbjct: 544 VLDNGKIIEEGTHAELLANNGRYKRLYQLD 573
|
Length = 573 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 6e-62
Identities = 183/746 (24%), Positives = 328/746 (43%), Gaps = 134/746 (17%)
Query: 656 SSNRQTSNGSDPESPISPLLTSDPKN----ERSHSQTFSRPHSHSDDFPTKVREEES--- 708
SS + ++N +D +S + D + + + + S S+ K+ +E +
Sbjct: 731 SSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASEN 790
Query: 709 --------------KHQKAPSFWRLAE---LSFAEWLYAVLGSIGAAIFGSFNPLLAYVI 751
+ KAP+ R+ S+ + + + SI A G P+ A +
Sbjct: 791 NAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVA--GGLYPVFALLY 848
Query: 752 GLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMM 811
V+ + + +L NK+ L I + + ++ L+++Y ++GEK+ + ++R +
Sbjct: 849 AKYVSTLF---DFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRL 905
Query: 812 FSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGML 871
F +L E+ +FD+++++ LS + D ++ N + IF IV ++ M+
Sbjct: 906 FENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTH----FIVLFLVSMV 961
Query: 872 LEWRLALVALATLP---ILSLSAIAQKLWLAGFSRGIQK-----------------MHRK 911
+ + + A L + + A + L ++ ++K + +
Sbjct: 962 MSFYFCPIVAAVLTGTYFIFMRVFAIRARLTA-NKDVEKKEINQPGTVFAYNSDDEIFKD 1020
Query: 912 ASLVLEDAVRNIYTVVAFCAGNKVMELY--------RLQLKKIFTKSFLHGMAIGFAFGF 963
S ++++A N+ TV+ + + L + Q +K S L +GF
Sbjct: 1021 PSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSML--------WGF 1072
Query: 964 SQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKS 1023
SQ N+ W+ +R G + + +K F F + L + S
Sbjct: 1073 SQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLS 1132
Query: 1024 LISVFEIIDRVPKIDPDDSSAVKPPN---VYGSIELKNVDFCYPSRPEVLVLSNFSLKVN 1080
+ +I R ID D+ ++ N + G IE+ +V+F Y SRP V + + + +
Sbjct: 1133 FEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCD 1192
Query: 1081 GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLL------------------------- 1115
+T A+VG +GSGKST++SL+ RFYD ++
Sbjct: 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGM 1252
Query: 1116 -------------DGRDLKLYN----------------LRWLRNHLGLVQQEPIIFSTTI 1146
G D ++ L+ LRN +V QEP++F+ +I
Sbjct: 1253 KNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSI 1312
Query: 1147 RENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206
ENI + + +A+ +VK A + A FI SLP+ YDT+VG G L+ GQKQRIAIAR
Sbjct: 1313 YENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARA 1372
Query: 1207 VLKNAPILLLDEASSSIESESSRVVQEAL-DTLIMGNKTTILIAHRAAMMRHVDNIVVLN 1265
+L+ ILLLDEA+SS++S S +++++ + D +KT I IAHR A ++ D IVV N
Sbjct: 1373 LLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFN 1432
Query: 1266 -----GGRIVEEGTHDSLL-AKNGLY 1285
G + GTH+ LL ++G+Y
Sbjct: 1433 NPDRTGSFVQAHGTHEELLSVQDGVY 1458
|
Length = 1466 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 9e-61
Identities = 112/280 (40%), Positives = 181/280 (64%), Gaps = 6/280 (2%)
Query: 1012 GLAPYILKRRKSLISVFEIIDRV-PKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVL 1070
G I + R L F++ D V + +P D+ + PNV G++E +++ F + + + +
Sbjct: 294 GFITQIFEARAKLEDFFDLEDSVFQREEPADAPEL--PNVKGAVEFRHITFEFANSSQGV 351
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
+ S + GQTVA+VG +G+GK+T+I+L++R YDP GQ+L+DG D+ LR
Sbjct: 352 --FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK 409
Query: 1131 HLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRG 1190
+ V Q+ +F+ +IRENI R A++ EV EAA+ A AH FI +GYDT VG RG
Sbjct: 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERG 469
Query: 1191 VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250
L+ G++QR+AIAR +LKNAPIL+LDEA+S+++ E+ V+ A+D L N+TT +IAH
Sbjct: 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDAL-RKNRTTFIIAH 528
Query: 1251 RAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290
R + +R+ D ++ L+ GR++E+G+ L+ K+G + +L++
Sbjct: 529 RLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 1e-60
Identities = 93/244 (38%), Positives = 145/244 (59%), Gaps = 2/244 (0%)
Query: 1039 PDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTI 1098
P+ + + P + G IE +NV F YP + E L N SL + G+ VA++G GSGKST+
Sbjct: 449 PEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTL 507
Query: 1099 ISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNAS 1158
+ L+ Y P G VLLDG D++ + LR ++G V Q+P +F T+R+NI A
Sbjct: 508 LKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD 567
Query: 1159 EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE 1218
+ E+ AA +A F+ P G D +G RG L+ GQ+Q +A+AR +L++ PILLLDE
Sbjct: 568 DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE 627
Query: 1219 ASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL 1278
+S++++ S ++ L + G KT +L+ HR +++ VD I+V++ GRIV +G D +
Sbjct: 628 PTSAMDNRSEERFKDRLKRWLAG-KTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686
Query: 1279 LAKN 1282
L
Sbjct: 687 LEAL 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 1e-59
Identities = 110/335 (32%), Positives = 178/335 (53%), Gaps = 13/335 (3%)
Query: 962 GFSQFLLFACNALL----LWYTGKSVRDGYMDLPTALKEYMVF-SFATFALVEPFGLA-P 1015
G SQ L+ N L LW V P AL VF + A F + P A
Sbjct: 245 GLSQALMILANGLTVVLMLWLAAGGVGGNAQ--PGALIALFVFAALAAFEALMPVAGAFQ 302
Query: 1016 YILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNF 1075
++ + S + EI ++ P++ +S S+ L NV F YP +P+ VL
Sbjct: 303 HLGQVIASARRINEITEQKPEVTFPTTSTAAADQ--VSLTLNNVSFTYPDQPQ-PVLKGL 359
Query: 1076 SLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLV 1135
SL++ G+ VA++G +G GKST++ L+ R +DP G++LL+G+ + Y+ LR + +V
Sbjct: 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVV 419
Query: 1136 QQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195
Q +FS T+R+N++ A NAS+ + E + + G + +G G L+
Sbjct: 420 SQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478
Query: 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM 1255
G+++R+ IAR +L +AP+LLLDE + +++E+ R + E L NKT ++I HR +
Sbjct: 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH-AQNKTVLMITHRLTGL 537
Query: 1256 RHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290
D I V++ G+I+E+GTH LLA+ G Y +L Q
Sbjct: 538 EQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 3e-58
Identities = 157/601 (26%), Positives = 285/601 (47%), Gaps = 49/601 (8%)
Query: 712 KAPSFWRLAELSFAEWLYAVL-GSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREE 770
+ PS R L+ L GS GA ++ LL + GL++ A+ + L +
Sbjct: 137 RKPSLLRA--------LWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQG 188
Query: 771 VNKW-----CLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDE 825
W + ++ V +LQ +Y + K+ + +LR V +F +
Sbjct: 189 RQDWLRPLLLGMGLTA-LLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQ 247
Query: 826 EENSADTLSMRL-ANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALAT- 883
A ++ R+ ND V S +L+ D+ ++ ++ +L + L L+ +A
Sbjct: 248 R--HAGDIASRVQLNDQ--VAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFA 303
Query: 884 -LPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYR-- 940
+ +L+L ++++ A +R +Q+ K + V +++I T+ A + + +
Sbjct: 304 AINVLALQLVSRRRVDA--NRRLQQDAGKLTGVAISGLQSIETLKASGLES---DFFSRW 358
Query: 941 --LQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYM 998
Q K + + L G+ L +AL+L G V +G + + +
Sbjct: 359 AGYQAKLLNAQQEL-GVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGM----LV 413
Query: 999 VFSFATFALVEPF----GLAPYILKRRKSLISVFEI----IDRV-PKIDPDDSSAVKPPN 1049
F + +EP G + + L + ++ +D + + + + + P
Sbjct: 414 AFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPR 473
Query: 1050 VYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV 1109
+ G +EL+N+ F Y S E ++ NFSL + GQ VA+VG SGSGKSTI L+ Y P
Sbjct: 474 LSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW 532
Query: 1110 AGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIA 1169
+G++L DG + L N + +V Q+ +F T+R+N+ +A++ A + A
Sbjct: 533 SGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDA 592
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
H I+S P GYD + G +L+ GQ+QR+ IAR +++N IL+LDEA+S+++ E+ +
Sbjct: 593 AIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK 652
Query: 1230 VVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLM 1289
++ D L T I++AHR + +R D I+VL G++V+ GTH+ L A G Y RL+
Sbjct: 653 II---DDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709
Query: 1290 Q 1290
+
Sbjct: 710 R 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 196 bits (502), Expect = 6e-58
Identities = 88/213 (41%), Positives = 122/213 (57%), Gaps = 42/213 (19%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF+NV FSY RP+ P+L LT+ + VA+VG +GSGKS+++ L+ R YDPT GE+
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTF 428
L+DG ++++L LE LR I V Q+P L S +IR+NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488
L G Q+ +++IARA+L +P IL+LDE T LD E E + EA
Sbjct: 97 ---LSGG---------------QRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 489 LDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521
L L G++ I+IA RLS IR+AD I V+D+GR
Sbjct: 139 LRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 4e-57
Identities = 121/330 (36%), Positives = 182/330 (55%), Gaps = 13/330 (3%)
Query: 233 LWVGRFLVTHNKAHGGEIVTAL-FAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS 291
L +G LV + GE++ + FA +L G L+Q + + R +++ S
Sbjct: 258 LVIGTVLVIKGELSVGEVIAFIGFANLLIGR-LDQMSGFITQIFEARAKLEDFFDL-EDS 315
Query: 292 SSTTNYDGN--TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSG 349
+ LP+V G +EFR++ F + + + F A + VA+VG G+G
Sbjct: 316 VFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSF--EAKAGQTVAIVGPTGAG 373
Query: 350 KSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR 409
K+++I L++R YDPT+G++L+DG +I + E LR I V Q+ L + SIR+NI GR
Sbjct: 374 KTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR 433
Query: 410 -DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468
AT +++ EAAK A AH FI GY+T VG G L+ ++ +L+IARA+L N IL
Sbjct: 434 EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPIL 493
Query: 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528
+LDE T LD E E V+ A+D L R+T IIA RLS +RNAD + +D+GRL E G+
Sbjct: 494 VLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553
Query: 529 DELLATGDLYAELLK-----CEEAAKLPRR 553
EL+ + +LL+ + A P R
Sbjct: 554 QELIQKDGRFYKLLRRSGLLTNQPATKPLR 583
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 1e-56
Identities = 156/572 (27%), Positives = 250/572 (43%), Gaps = 88/572 (15%)
Query: 730 AVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVAN 789
A+LG +GA + + LLA V+ +++A E+ +A + ++ +
Sbjct: 9 ALLGVLGALLIIAQAWLLARVVDGLISA-------GEPLAELLPALGALALVLLLRALLG 61
Query: 790 FLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRL----ANDATFVR 845
+LQ + ++R + A+ W + S + ++ L A D F R
Sbjct: 62 WLQERAAARAAAAVKSQLRERLLEAVAALGPRWL-QGRPSGELATLALEGVEALDGYFAR 120
Query: 846 AAFSNRLSIFIQDSAAVIVAVIIG---MLLEWRLALVALATLPILSL---------SAIA 893
Q AVIV + I +W L+ L T P++ + A A
Sbjct: 121 --------YLPQLVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPIFMILIGWAAQAAA 172
Query: 894 QKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGN-------KVMELYRLQLKKI 946
+K W + R + L D +R + T+ F + E YR + ++
Sbjct: 173 RKQW--------AALSRLSGHFL-DRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRV 223
Query: 947 FTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFA 1006
+FL + S AL+ Y G + G +DL T L F
Sbjct: 224 LRIAFLSSAVLELFATLSV-------ALVAVYIGFRLLAGDLDLATGL----------FV 266
Query: 1007 LVEPFGLAP--YILKR------------RKSLISVFEIIDRVPKIDPDDSSAVKPPNVYG 1052
L+ LAP Y+ R + ++F ++D P+ + P
Sbjct: 267 LL----LAPEFYLPLRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAP-- 320
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
S+E V YP R L S V G+ VA+VG SG+GKST+++L+ F DP G
Sbjct: 321 SLEFSGVSVAYPGRRPAL--RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAH 1172
+ ++G L + R+ + V Q P +F+ TI ENI AR +AS+AE++EA A
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLD 438
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
F+++LP G DT +G G L+ GQ QR+A+AR L++AP+LLLDE ++ +++E+ V
Sbjct: 439 EFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL 498
Query: 1233 EALDTLIMGNKTTILIAHRAAMMRHVDNIVVL 1264
EAL L +T +L+ HR A+ D IVVL
Sbjct: 499 EALRAL-AQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 6e-56
Identities = 96/265 (36%), Positives = 149/265 (56%), Gaps = 4/265 (1%)
Query: 1026 SVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTV 1085
+F +++ A I L+N+ F YP LS+ +L + GQ
Sbjct: 293 KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLT 350
Query: 1086 AVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTT 1145
A+VG SG+GKST+++L+ F P G++ ++G DL+ + R + V Q P +F+ T
Sbjct: 351 ALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGT 410
Query: 1146 IRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205
IRENI+ AR +AS+ E+ A A F+ P G DT +G G L+ GQ QR+A+AR
Sbjct: 411 IRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALAR 469
Query: 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLN 1265
+L A +LLLDE ++ +++E+ +++ +AL L KT ++I HR D IVVL+
Sbjct: 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADADRIVVLD 528
Query: 1266 GGRIVEEGTHDSLLAKNGLYVRLMQ 1290
GR+VE+GTH+ L K GLY L++
Sbjct: 529 NGRLVEQGTHEELSEKQGLYANLLK 553
|
Length = 559 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 3e-55
Identities = 80/225 (35%), Positives = 132/225 (58%), Gaps = 7/225 (3%)
Query: 1052 GSIELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA 1110
G IE KNV Y RP VL N S + G+ V +VG +GSGKS+++ + R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1111 GQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI-IYARHNASEAEVKEAARIA 1169
G +L+DG D+ L LR+ + ++ Q+P++FS TIR N+ + + S+ E+ +A
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEY--SDEELWQALERV 116
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
F+ SLP G DT V G +L+ GQ+Q + +AR +L+ + IL+LDEA++S++ E+
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 1230 VVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274
++Q+ + + T + IAHR + D I+VL+ GR+VE +
Sbjct: 177 LIQKTIREA-FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 6e-54
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 6/219 (2%)
Query: 307 GNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
G IEFRNV FSY P EIP L LT+ A + VA++GR GSGKS+++ L+ Y PT
Sbjct: 1 GRIEFRNVSFSY---PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT 57
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQ-IEEAAKIA 423
G VLLDG +I+ L LR IG V Q+ L ++RDNI G D+ I AA++A
Sbjct: 58 SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELA 117
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
F++ G + Q+G G L+ Q+ +++ARA+L +P ILLLDE T +D +E
Sbjct: 118 GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEE 177
Query: 484 AVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRL 522
++E L L+ ++ III R SL+ D I VMD GR+
Sbjct: 178 RLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 2e-53
Identities = 132/423 (31%), Positives = 209/423 (49%), Gaps = 24/423 (5%)
Query: 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRT 182
L IA + + + L P I+ G + L RLAE A+ ++ +++S + T
Sbjct: 278 LVIAIIG-GPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLET 336
Query: 183 LYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLA--ICSCALQLWVGRFLV 240
+ A E + + ++ A R G+ + L F + S A+ + VG +L+
Sbjct: 337 IKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFA-QFIQQLVSVAIVV-VGVYLI 394
Query: 241 THNKAHGGEIVTALFAVILSG--LG-LNQAATNFYSFDQGRIAAYRLYEMIS----RSSS 293
+ + G ++ V+LSG L L Q A + Q + A L E++ R
Sbjct: 395 SDGELTMGGLIAC---VMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451
Query: 294 TTNYDGNTLPSVHGNIEFRNVYFSYLSRPE--IPILSGFYLTVPAKKAVALVGRNGSGKS 351
T P + G IEFRNV F+Y P P L LT+ + VA++GR GSGKS
Sbjct: 452 TRFLH---RPRLQGEIEFRNVSFAY---PGQETPALDNVSLTIRPGEKVAIIGRIGSGKS 505
Query: 352 SIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA 411
+++ L+ Y PT G VLLDG +I+ + LR IG V Q+P L ++RDNIA G
Sbjct: 506 TLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY 565
Query: 412 TLDQ-IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLL 470
D+ I AA++A F+ G + Q+G G +L+ Q+ +++ARA+L +P ILLL
Sbjct: 566 ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625
Query: 471 DEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDE 530
DE T +D +E ++ L + G++ +++ R SL+ D I VMD GR+ G D+
Sbjct: 626 DEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ 685
Query: 531 LLA 533
+L
Sbjct: 686 VLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 3e-52
Identities = 141/504 (27%), Positives = 226/504 (44%), Gaps = 73/504 (14%)
Query: 78 MSFFDTYGNNGDIVSQV-----LSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQ 132
+ FF + GDI S+V +++ L Q L+ + + M F+ + +
Sbjct: 242 VRFFAQR-HAGDIASRVQLNDQVAEFLSGQ--LATTALDAV--MLVFY--ALLMLLYDPV 294
Query: 133 IALITLCTGPFIVAAGGISNIFLHRLAENIQDA-------YAEAASIAEQAVSYIRTLYA 185
+ LI +A I+ + L ++ DA + +A + I TL A
Sbjct: 295 LTLIG-------IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKA 347
Query: 186 --FTNETLAKYS--YATSLQA-------TLRYGILISLVQGLGLGFTYGLAICSCALQLW 234
++ ++++ A L A T G+L +L+ L + AL L
Sbjct: 348 SGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSL-----------NSALILV 396
Query: 235 VGRFLVTHNKAHGGEIVTALFAVILSGL-----GLNQAATNFYSFDQG--------RIAA 281
VG V + G +V F ++S L + R
Sbjct: 397 VGGLRVMEGQLTIGMLVA--FQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454
Query: 282 YRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVA 341
L E ++ + P + G +E RN+ F Y S E P++ F LT+ + VA
Sbjct: 455 DPLLEEEEAPAAGSE----PSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVA 509
Query: 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSI 401
LVG +GSGKS+I L+ Y P GE+L DG + + E L + + +V Q+ L ++
Sbjct: 510 LVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569
Query: 402 RDNIAYGRDATL--DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459
RDN+ D T+ + A K A H I+S GY+ ++ G L+ Q+ +L IAR
Sbjct: 570 RDNLTLW-DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIAR 628
Query: 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519
A++ NPSIL+LDE T LD E E+ + + L G + II+A RLS IR+ D I V++
Sbjct: 629 ALVRNPSILILDEATSALDPETEKIIDDNLR--RRGCTCIIVAHRLSTIRDCDEIIVLER 686
Query: 520 GRLFEMGTHDELLATGDLYAELLK 543
G++ + GTH+EL A G YA L++
Sbjct: 687 GKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 3e-52
Identities = 140/444 (31%), Positives = 207/444 (46%), Gaps = 40/444 (9%)
Query: 124 AIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEA-ASIAEQAVSYIR- 181
AI F N W ALI L T P I + I + A++ + A A ++ + +R
Sbjct: 134 AIFFFN-WAAALILLITAPLIP----LFMILVGLAAKDASEKQFSALARLSGHFLDRLRG 188
Query: 182 --TLYAF-----TNETLAKYS--YATSLQATLRYGILISLVQGLGLGFTY---GLAICSC 229
TL AF T E + K S + + + LR L S V F Y L
Sbjct: 189 LETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEF---FAYLSIALVAVYI 245
Query: 230 ALQLWVGRFLVTHNKAHGGEIVTALFAVILSG---LGLNQAATNFYSFDQGRIAAYRLYE 286
R L + + LF +IL+ L + F++ G AA +L+
Sbjct: 246 GF-----RLLGEGDLT----LFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFT 296
Query: 287 MISRSSSTTNYDGNTLPSVHGN--IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVG 344
++ S V IE S+ P LS LT+ A + ALVG
Sbjct: 297 LLE--SPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVG 354
Query: 345 RNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404
+G+GKS+++ L+ F PT GE+ ++G ++++L E R QI V+Q P L + +IR+N
Sbjct: 355 ASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN 414
Query: 405 IAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463
I R DA+ ++I A A F+ G +T +G G L+ Q +L++ARA+L
Sbjct: 415 ILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLS 473
Query: 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLF 523
S+LLLDE T LD E E+ + +AL L ++ ++I RL +AD I V+D GRL
Sbjct: 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLV 533
Query: 524 EMGTHDELLATGDLYAELLKCEEA 547
E GTH+EL LYA LLK +E
Sbjct: 534 EQGTHEELSEKQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 4e-52
Identities = 141/529 (26%), Positives = 257/529 (48%), Gaps = 39/529 (7%)
Query: 775 CLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLS 834
LIIA ++ + +++Q F ++G++++ + + + +F +
Sbjct: 201 GLIIAY--IIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGE--IV 256
Query: 835 MRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQ 894
R + ++ + A S LS+F+ VIV + + L L++L ++P+ ++ I
Sbjct: 257 SRFTDASSIIDALASTILSLFLDMWILVIVGLFLV-RQNMLLFLLSLLSIPVYAVIIIL- 314
Query: 895 KLWLAGFSRGIQKMHRKA--------SLVLEDAVRNIYTVVAFC----AGNKVMELYRLQ 942
F R K++ A S ++ED + I T+ + +K+ +
Sbjct: 315 ------FKRTFNKLNHDAMQANAVLNSSIIED-LNGIETIKSLTSEAERYSKIDSEFGDY 367
Query: 943 LKKIF--TKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVF 1000
L K F K+ AI ++ +L N ++LW V G + L + +
Sbjct: 368 LNKSFKYQKADQGQQAIKAV---TKLIL---NVVILWTGAYLVMRGKLTLGQLITFNALL 421
Query: 1001 SFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVD 1060
S+ L L P + R + + E+ V + + N+ G I + +V
Sbjct: 422 SYFLTPLENIINLQPKLQAARVANNRLNEVY-LVDSEFINKKKRTELNNLNGDIVINDVS 480
Query: 1061 FCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL 1120
+ Y +L S+ SL + +VG+SGSGKST+ L+ F+ +G++LL+G L
Sbjct: 481 YSYGYGSNIL--SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL 538
Query: 1121 KLYNLRWLRNHLGLVQQEPIIFSTTIREN-IIYARHNASEAEVKEAARIANAHHFISSLP 1179
K + LR + + QEP IFS +I EN ++ A+ N S+ E+ A IA I ++P
Sbjct: 539 KDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMP 598
Query: 1180 HGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI 1239
GY T + G ++ GQKQRIA+AR +L ++ +L+LDE++S++++ + + + L L
Sbjct: 599 LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL--LN 656
Query: 1240 MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288
+ +KT I +AHR ++ + D I+VL+ G+I+E+G+HD LL +NG Y L
Sbjct: 657 LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 4e-50
Identities = 151/524 (28%), Positives = 252/524 (48%), Gaps = 32/524 (6%)
Query: 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIV 91
+ L I YI + + +I++ + G+R + I Y++ L MSFF T G+IV
Sbjct: 200 IGLIIAYIIQQILS--YIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIV 256
Query: 92 SQVLSDVLLIQSALSEKVGNYIHNMATFFS-GLAIAFVNCWQIALITLCTGP-FIVAAGG 149
S+ +D I AL+ + + +M GL + N + L++L + P + V
Sbjct: 257 SR-FTDASSIIDALASTILSLFLDMWILVIVGLFLVRQNM-LLFLLSLLSIPVYAVIIIL 314
Query: 150 ISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAK----YSYATSLQATLR 205
F + +Q +SI E ++ I T+ + T+E + L + +
Sbjct: 315 FKRTFNKLNHDAMQANAVLNSSIIED-LNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373
Query: 206 YGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVT--ALFAVILSGLG 263
Y Q + L + + LW G +LV K G+++T AL + L+ L
Sbjct: 374 YQKADQGQQAIKAVTKLILNV----VILWTGAYLVMRGKLTLGQLITFNALLSYFLTPL- 428
Query: 264 LNQAATNFYS-FDQGRIAAYRLYEMISRSSSTTNYDGNT-LPSVHGNIEFRNVYFSY-LS 320
+ N R+A RL E+ S N T L +++G+I +V +SY
Sbjct: 429 --ENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG 486
Query: 321 RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380
ILS LT+ +VG +GSGKS++ L+ F+ GE+LL+G ++K++
Sbjct: 487 SN---ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543
Query: 381 EWLRSQIGLVTQEPALLSLSIRDNIAYG--RDATLDQIEEAAKIAHAHTFISSLEKGYET 438
LR I + QEP + S SI +N+ G + + D+I A +IA I ++ GY+T
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQT 603
Query: 439 QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRST 498
++ G +++ QK ++++ARA+L + +L+LDE T LD E+ + +LL L T
Sbjct: 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN--NLLNLQDKT 661
Query: 499 II-IARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
II +A RLS+ + +D I V+D G++ E G+HDELL YA L
Sbjct: 662 IIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 2e-49
Identities = 102/276 (36%), Positives = 162/276 (58%), Gaps = 14/276 (5%)
Query: 1023 SLISVFEIIDRVPKIDP-------DDSSAVKPPNVYGSIELKNVDFCY-PSRPEVLVLSN 1074
+LIS+ +I + P D + P + G+IE+ V F Y P P L+L +
Sbjct: 414 TLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGP--LILDD 471
Query: 1075 FSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGL 1134
SL++ G+ VA+VG SGSGKST++ L+ F P +G V DG+DL +++ +R LG+
Sbjct: 472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGV 531
Query: 1135 VQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194
V Q + S +I ENI + E EAAR+A I ++P G T + G L+
Sbjct: 532 VLQNGRLMSGSIFENIAGGAPLTLD-EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLS 590
Query: 1195 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAM 1254
GQ+QR+ IAR +++ ILL DEA+S++++ + +V E+L+ L T I+IAHR +
Sbjct: 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST 647
Query: 1255 MRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290
+R+ D I VL+ GR+V++GT+D L+A+ GL+ +L +
Sbjct: 648 IRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 2e-49
Identities = 99/264 (37%), Positives = 155/264 (58%), Gaps = 8/264 (3%)
Query: 1027 VFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVA 1086
VFE++D + +D P G I++ NV F Y R + LVL N +L V VA
Sbjct: 318 VFELMDGPRQQYGNDDR----PLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVA 371
Query: 1087 VVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTI 1146
+VG +GSGKST+ SL+ +Y G++ LDGR L + LR + +VQQ+P++ + T
Sbjct: 372 LVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTF 431
Query: 1147 RENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206
N+ R + SE +V +A SLP G T +G +G +L+ GQKQ +A+ARV
Sbjct: 432 LANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490
Query: 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266
+++ IL+LDEA+++I+S + + +Q+AL + + T ++IAHR + + D I+VL+
Sbjct: 491 LVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHR 549
Query: 1267 GRIVEEGTHDSLLAKNGLYVRLMQ 1290
G+ VE+GTH LLA G Y ++ Q
Sbjct: 550 GQAVEQGTHQQLLAAQGRYWQMYQ 573
|
Length = 592 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 4e-49
Identities = 159/566 (28%), Positives = 263/566 (46%), Gaps = 86/566 (15%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
++++ +V I F +I C + + ++ +++ + QD F D N G
Sbjct: 96 VNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN--NPG 153
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG-LAIAFVNCWQIALITLCTG---PFI 144
S++ SD+ ++ +G + T+ S L + + ++ A +TLC P I
Sbjct: 154 ---SKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLI 210
Query: 145 VAAGGISNIFLHRLAENIQDAYAE-AASIAEQAVSYIRTLYAFTNET--LAKYSYATSLQ 201
G I N + ++ + Y SI E+A+ IRT+ ++ E L K++ + L
Sbjct: 211 YICGVICNKKV-KINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLY 269
Query: 202 ATLRYGILISLVQGLGLGFTYGLAICSCALQLWVG-RFLVT-------HNKAHGGEIVTA 253
+ +Y + + ++ L +G G + S A W G R +++ +N HGG +++
Sbjct: 270 S--KYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISI 327
Query: 254 LFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSST-TNYDGNTLPSVHGNIEFR 312
L V++S L N + + A LYE+I+R N DG L + I+F+
Sbjct: 328 LLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIK-KIQFK 386
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL-D 371
NV F Y +R ++ I T+ K A VG +G GKS+I+ L+ER YDPT G++++ D
Sbjct: 387 NVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIND 446
Query: 372 GENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG------RDATLDQIEE------- 418
N+K++ L+W RS+IG+V+Q+P L S SI++NI Y +A + E
Sbjct: 447 SHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE 506
Query: 419 --------AAKIAHAHTFISS---------LEKGYET----------------------- 438
AK A +S+ + K Y+T
Sbjct: 507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566
Query: 439 -----QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493
VG L+ QK ++SIARA++ NP IL+LDE T LD ++E VQ+ ++ L
Sbjct: 567 DKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626
Query: 494 --LGRSTIIIARRLSLIRNADYIAVM 517
R TIIIA RLS IR A+ I V+
Sbjct: 627 GNENRITIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 4e-49
Identities = 138/458 (30%), Positives = 213/458 (46%), Gaps = 63/458 (13%)
Query: 858 DSAAVIVAVIIGMLLE--WRLALVALATLPILSLSAIAQ---------KLWLAGFSRGIQ 906
DS + AV+I M + W+L L+AL +P++++ I + KL A FS
Sbjct: 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAI-MIKRYGDQLHERFKLAQAAFSS--L 175
Query: 907 KMHRKASLV---------LEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAI 957
+ SL LED ++ A G K M + R+ + F + I
Sbjct: 176 NDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDAR--FDPT------I 227
Query: 958 GFAFGFSQFLLFACNALLLWY--------TGKSVRDGYMDLPTALKEYMVFSFATFALVE 1009
A G + L + ++ T + G M P +M F +VE
Sbjct: 228 YIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWM------FNIVE 281
Query: 1010 PFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYP--SRP 1067
G A Y R +++++ ++ D S V P G +++ F YP P
Sbjct: 282 R-GSAAY--SRIRAMLAEAPVVK-------DGSEPV--PEGRGELDVNIRQFTYPQTDHP 329
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW 1127
L N + + GQ + + G +GSGKST++SLI+R +D G + L L
Sbjct: 330 ---ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386
Query: 1128 LRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVG 1187
R+ L +V Q P +FS T+ NI R +A++ E++ AR+A+ H I LP GYDT VG
Sbjct: 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446
Query: 1188 MRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTIL 1247
RGV L+ GQKQRI+IAR +L NA IL+LD+A S+++ + + L G +T I+
Sbjct: 447 ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEG-RTVII 505
Query: 1248 IAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLY 1285
AHR + + I+V+ G I + G HD L ++G Y
Sbjct: 506 SAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWY 543
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 6e-47
Identities = 70/217 (32%), Positives = 127/217 (58%), Gaps = 4/217 (1%)
Query: 1074 NFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133
NF+L GQ +A+VG SG+GK+++++ + F P G + ++G +L+ + R HL
Sbjct: 370 NFTLP--AGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426
Query: 1134 LVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDL 1193
V Q P + T+R+N++ +AS+ ++++A A F+ LP G DT +G + L
Sbjct: 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486
Query: 1194 TPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAA 1253
+ GQ QR+A+AR +L+ +LLLDE ++S+++ S ++V +AL +TT+++ H+
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMVTHQLE 545
Query: 1254 MMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290
+ D I V+ G+IV++G + L GL+ L+
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLA 582
|
Length = 588 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 8e-47
Identities = 122/411 (29%), Positives = 189/411 (45%), Gaps = 33/411 (8%)
Query: 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDA-YAEAASIAEQAVSYIR 181
LA F W LI L T P I I I + A+ +A + ++ + +R
Sbjct: 136 LAAVFPQDWISGLILLLTAPLIP----IFMILIGWAAQAAARKQWAALSRLSGHFLDRLR 191
Query: 182 ---TLYAF-----TNETLAKYS--YATSLQATLRYGILISLVQGLGLGFTYGLAICSCAL 231
TL F + + S Y LR L S V L L++ A+
Sbjct: 192 GLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAV----LELFATLSVALVAV 247
Query: 232 QLWVGRFLVTHNKAHGG-EIVTALFAVILSG---LGLNQAATNFYSFDQGRIAAYRLYEM 287
+ R L G ++ T LF ++L+ L L Q +++ G AA L+ +
Sbjct: 248 YIGF-RLL------AGDLDLATGLFVLLLAPEFYLPLRQLGAQYHARADGVAAAEALFAV 300
Query: 288 ISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNG 347
+ + + ++EF V +Y R P L TVP + VALVG +G
Sbjct: 301 LDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRR--PALRPVSFTVPPGERVALVGPSG 358
Query: 348 SGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAY 407
+GKS+++ L+ F DPT G + ++G + + + R QI V Q P L + +I +NI
Sbjct: 359 AGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRL 418
Query: 408 GR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466
R DA+ +I EA + A F+++L +G +T +G G L+ Q +L++ARA L +
Sbjct: 419 ARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVM 517
+LLLDE T LD E E V EAL L GR+ +++ RL+L AD I V+
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 2e-46
Identities = 96/334 (28%), Positives = 154/334 (46%), Gaps = 15/334 (4%)
Query: 215 GLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATN---- 270
L GL + L LW+ G +L +A
Sbjct: 246 DAILLLIAGLLVI--GLLLWMAA-----QVGAGALAQPGAALALLVIFAALEAFEPLAPG 298
Query: 271 -FYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSG 329
F Q +A RL +++ + T + + +E RNV F+Y + L
Sbjct: 299 AFQHLGQVIASARRLNDILDQKPEVT-FPDEQTATTGQALELRNVSFTY-PGQQTKALKN 356
Query: 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389
F LT+ + VA++GR+GSGKS+++ L+ +DP G + L+G I +L + LR I +
Sbjct: 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISV 416
Query: 390 VTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
+TQ L S ++RDN+ DA+ +++ A + + S G T +G G L+
Sbjct: 417 LTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLS 476
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
++ +L++ARA+L + + LLDE T GLD ER V L G++ +++ RL +
Sbjct: 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGL 536
Query: 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542
D I V+D G++ E GTH ELLA Y L
Sbjct: 537 ERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLY 570
|
Length = 573 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 4e-46
Identities = 91/261 (34%), Positives = 143/261 (54%), Gaps = 5/261 (1%)
Query: 1021 RKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVN 1080
R++ + E++ P DP A+ P G + ++NV P + L S +
Sbjct: 288 RQAYKRLNELLANYPSRDP----AMPLPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQ 342
Query: 1081 GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPI 1140
G+ +A++G SGSGKST+ LI + P +G V LDG DLK ++ H+G + Q+
Sbjct: 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVE 402
Query: 1141 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200
+F T+ ENI NA ++ EAA++A H I LP GYDT +G G L+ GQ+QR
Sbjct: 403 LFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR 462
Query: 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDN 1260
IA+AR + + +++LDE +S+++ E + + A+ L T ++I HR +++ VD
Sbjct: 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDK 522
Query: 1261 IVVLNGGRIVEEGTHDSLLAK 1281
I+VL GRI G D +LAK
Sbjct: 523 ILVLQDGRIARFGERDEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 1e-45
Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 3/222 (1%)
Query: 307 GNIEFRNVYFSYLSRPEI-PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL 365
G+IEF+NV Y RP + P+L ++ + V +VGR GSGKSS++ + R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 366 GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425
G +L+DG +I + L LRS+I ++ Q+P L S +IR N+ + + +++ +A +
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGL 118
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
F+ SL G +T V G L+ Q+ L +ARA+L IL+LDE T +D E + +
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527
Q+ + + + IA RL I ++D I V+D+GR+ E +
Sbjct: 179 QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 171 bits (437), Expect = 6e-45
Identities = 90/263 (34%), Positives = 144/263 (54%), Gaps = 3/263 (1%)
Query: 280 AAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKA 339
+A R+ E+ + T +T + ++ NV F+Y +P+ P+L G L + A +
Sbjct: 310 SARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKAGEK 368
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSL 399
VAL+GR G GKS+++ L+ R +DP GE+LL+G+ I + LR I +V+Q L S
Sbjct: 369 VALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA 428
Query: 400 SIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458
++RDN+ +A+ + + E + + +KG +G G L+ ++ +L IA
Sbjct: 429 TLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIA 487
Query: 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518
RA+L + +LLLDE T GLD E ER + E L ++ ++I RL+ + D I VMD
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMD 547
Query: 519 EGRLFEMGTHDELLATGDLYAEL 541
G++ E GTH ELLA Y +L
Sbjct: 548 NGQIIEQGTHQELLAQQGRYYQL 570
|
Length = 574 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 6e-45
Identities = 92/258 (35%), Positives = 141/258 (54%), Gaps = 4/258 (1%)
Query: 276 QGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVP 335
Q +A R++E++ D L S G I+ NV F+Y R + +L L+VP
Sbjct: 310 QAVVAGERVFELMDGPRQQYGNDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNINLSVP 365
Query: 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA 395
++ VALVG GSGKS++ L+ +Y T GE+ LDG + +L LR + +V Q+P
Sbjct: 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPV 425
Query: 396 LLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455
+L+ + N+ GRD + +Q+ +A + SL G T +G G L+ QK L
Sbjct: 426 VLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485
Query: 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515
++AR ++ P IL+LDE T +D E+A+Q+AL + + ++IA RLS I AD I
Sbjct: 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTIL 545
Query: 516 VMDEGRLFEMGTHDELLA 533
V+ G+ E GTH +LLA
Sbjct: 546 VLHRGQAVEQGTHQQLLA 563
|
Length = 592 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 6e-45
Identities = 98/308 (31%), Positives = 158/308 (51%), Gaps = 11/308 (3%)
Query: 231 LQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGL---NQAATNFYSFDQGRIAAYRLYEM 287
L L +G +L + G ++ IL G L + A + F R A RL E+
Sbjct: 241 LVLGLGAYLAIDGEITPGMMIAG---SILVGRALAPIDGAIGGWKQFSGARQAYKRLNEL 297
Query: 288 ISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNG 347
++ S LP G++ NV + P L G ++ A +A+A++G +G
Sbjct: 298 LANYPS--RDPAMPLPEPEGHLSVENVTIVP-PGGKKPTLRGISFSLQAGEALAIIGPSG 354
Query: 348 SGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA- 406
SGKS++ L+ + PT G V LDG ++K E IG + Q+ L ++ +NIA
Sbjct: 355 SGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR 414
Query: 407 YGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466
+G +A ++I EAAK+A H I L GY+T +G G L+ Q+ ++++ARA+ +P
Sbjct: 415 FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474
Query: 467 ILLLDEVTGGLDFEAERAVQEAL-DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525
+++LDE LD E E+A+ A+ L G + ++I R SL+ D I V+ +GR+
Sbjct: 475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARF 534
Query: 526 GTHDELLA 533
G DE+LA
Sbjct: 535 GERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 1e-44
Identities = 139/486 (28%), Positives = 225/486 (46%), Gaps = 40/486 (8%)
Query: 73 LLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEK-VGNYIHNMATFFSGLAIAFVNCW 131
LL +SFF Y GD+ S+ + + I+ LS + + + + L + F W
Sbjct: 219 LLRLPVSFFRQYST-GDLASRAMG-ISQIRRILSGSTLTTLLSGIFALLN-LGLMFYYSW 275
Query: 132 QIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQ---AVSYIRTLYAFTN 188
++AL+ + +A + + R + + + + + Q +S +R A N
Sbjct: 276 KLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGA-EN 334
Query: 189 ETLAKYS--YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAH 246
A+++ ++ + L + +L+ + S AL L+
Sbjct: 335 RAFARWAKLFSRQRKLELSAQRIENLLTVFNAVL---PVLTSAAL-FAAAISLLG----- 385
Query: 247 GGEIVTALFAVILSGLGLNQAATNFY----SFDQGRIAAYRLYEMISRS----SSTTNYD 298
G + F L N A +F I+ + + R+ + D
Sbjct: 386 GAGLSLGSF------LAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439
Query: 299 GNTLP--SVHGNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355
+ G IE V F Y RP+ P IL L + + VA+VG +GSGKS+++
Sbjct: 440 EAKTDPGKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLR 497
Query: 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQ 415
L+ F P G V DG+++ L ++ +R Q+G+V Q L+S SI +NIA G TLD+
Sbjct: 498 LLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE 557
Query: 416 IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475
EAA++A I ++ G T + G L+ Q+ +L IARA++ P ILL DE T
Sbjct: 558 AWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATS 617
Query: 476 GLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG 535
LD + V E+L+ L + R I+IA RLS IRNAD I V+D GR+ + GT+DEL+A
Sbjct: 618 ALDNRTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675
Query: 536 DLYAEL 541
L+A+L
Sbjct: 676 GLFAQL 681
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 2e-44
Identities = 139/514 (27%), Positives = 242/514 (47%), Gaps = 36/514 (7%)
Query: 54 WILTGERQTAV-IRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNY 112
+ Q AV +R + + L Q F+ + GD++++ +DV + A E V
Sbjct: 59 LLFGASYQLAVELREDFYRQLSRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTL 117
Query: 113 IHNMATFFSGLAIAFVNC----WQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAE 168
+ ++ G A+ V WQ+ L+ L P + LH + Q A++
Sbjct: 118 VDSLVM---GCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSS 174
Query: 169 AASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQG-------LGLGFT 221
+++++ IR + AF E +A + T + + ++ + + +G
Sbjct: 175 LNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMA 234
Query: 222 YGLAICSCALQLWVGRFLVTHNKAHGGEI---VTALFAVILSGLGLNQAATNFYSFDQGR 278
LAI G ++V + G++ V L +I L L A F ++G
Sbjct: 235 NLLAIGG-------GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLAL---AWMFNIVERGS 284
Query: 279 IAAYRLYEMISRSSSTTNYDGN-TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAK 337
A R+ M++ + DG+ +P G ++ F+Y + + P L T+
Sbjct: 285 AAYSRIRAMLAEAPVVK--DGSEPVPEGRGELDVNIRQFTY-PQTDHPALENVNFTLKPG 341
Query: 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL 397
+ + + G GSGKS+++ L++R +D + G++ + L+L+ RS++ +V+Q P L
Sbjct: 342 QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401
Query: 398 SLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456
S ++ +NIA GR DAT +IE A++A H I L +GY+T+VG G+ L+ QK ++S
Sbjct: 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRIS 461
Query: 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516
IARA+LLN IL+LD+ +D E + L GR+ II A RLS + A I V
Sbjct: 462 IARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILV 521
Query: 517 MDEGRLFEMGTHDELLATGDLYAELLKCE--EAA 548
M G + + G HD+L Y ++ + + EAA
Sbjct: 522 MQHGHIAQRGNHDQLAQQSGWYRDMYRYQQLEAA 555
|
Length = 569 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 175 bits (444), Expect = 5e-44
Identities = 179/709 (25%), Positives = 298/709 (42%), Gaps = 160/709 (22%)
Query: 709 KHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLR 768
K QK P F L + + + A I G P V G+I+ + +L
Sbjct: 41 KTQKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIM-------KNMNLG 93
Query: 769 EEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEEN 828
E VN + +G+ + +F+ F ++ K+ + ++ ++ + + D
Sbjct: 94 ENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPG 153
Query: 829 SADTLSMRLANDATF----VRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATL 884
S +L +D F V A + ++A + I + RL L
Sbjct: 154 S------KLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVF 207
Query: 885 PILSLSAIAQKLWLAGFSRGIQKMHRKASL--------VLEDAVRNIYTVVAFCAGNKVM 936
P++ + + K+++K SL ++E+A+ I TVV++C ++
Sbjct: 208 PLIYICGV--------ICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTIL 259
Query: 937 ELYRLQLKKIFTK-----SFLHGMAIGFAFGFSQFLLFACNALLLWY-TGKSVRDGYMDL 990
+ + L +K+++K +F+ + IG GF + A A WY T + D
Sbjct: 260 KKFNLS-EKLYSKYILKANFMESLHIGMINGF----ILASYAFGFWYGTRIIISDLSNQQ 314
Query: 991 PTA-LKEYMVFSFATFALVEPFGLA---PYILKRRKSLI---SVFEIIDRVPKIDPDDSS 1043
P V S L+ F L P I + KSL S++EII+R P ++ +D
Sbjct: 315 PNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDG 374
Query: 1044 AVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIE 1103
K ++ I+ KNV F Y +R +V + + + + G+T A VG SG GKSTI+ LIE
Sbjct: 375 K-KLKDI-KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432
Query: 1104 RFYDPVAGQVLL-DGRDLK--------------------------------LYNLRWLR- 1129
R YDP G +++ D +LK LY+L+ L
Sbjct: 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEA 492
Query: 1130 -----NHLGLVQQE----------------PIIFSTTIRENIIYARHN---ASEAEVKEA 1165
N G QE + +TT +I R N ++EV +
Sbjct: 493 LSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDV 552
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
++ H F+S+LP Y+T VG L+ GQKQRI+IAR +++N IL+LDEA+SS+++
Sbjct: 553 SKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612
Query: 1226 ESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLN------------------- 1265
+S +VQ+ ++ L N+ TI+IAHR + +R+ + I VL+
Sbjct: 613 KSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672
Query: 1266 ----------------------------GGRIVEEGTHDSLLA-KNGLY 1285
G I+E+GTHD+L+ KNG+Y
Sbjct: 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIY 721
|
Length = 1466 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 9e-44
Identities = 114/404 (28%), Positives = 195/404 (48%), Gaps = 22/404 (5%)
Query: 859 SAAVIVAVIIGM-LLEWRLALVALATLPILSLSAIAQKLWLAGFS-RGIQKMHRKASLVL 916
+ V A + + +L AL+ A L + A L A + + + ++ + + L
Sbjct: 137 ALVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAAQL 196
Query: 917 EDAVRNIYTVVAFCAGNKVMELYR---LQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNA 973
DA+ +VA A + +L + + A A G + LL A A
Sbjct: 197 TDALDGAAELVASGALPAALAQVEEADRELTRAERR-----AAAATALGAALTLLAAGLA 251
Query: 974 LL--LWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKR-RKSLISVFEI 1030
+L LW G +V DG + P L ++ A F A L R R + + E+
Sbjct: 252 VLGALWAGGPAVADGRLA-PVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEV 310
Query: 1031 ID-RVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVG 1089
+D P + +A ++EL+++ YP P VL SL + G+ VA++G
Sbjct: 311 LDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVL--DGVSLDLPPGERVAILG 368
Query: 1090 VSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIREN 1149
SGSGKST+++ + DP+ G+V LDG + + +R + + Q+ +F TT+REN
Sbjct: 369 PSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVREN 428
Query: 1150 IIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209
+ AR +A++ E+ A ++ +LP G DT +G G L+ G++QR+A+AR +L
Sbjct: 429 LRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLA 488
Query: 1210 NAPILLLDEASSSIESESSRVVQEALDTLI--MGNKTTILIAHR 1251
+APILLLDE + +++E++ E L+ L+ + +T +LI H
Sbjct: 489 DAPILLLDEPTEHLDAETAD---ELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 2e-43
Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 1/234 (0%)
Query: 1048 PNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD 1107
P G++ ++ + P + + +L S + G+ + ++G SGSGKST+ L+ +
Sbjct: 329 PAPQGALSVERLTAAPPGQKKP-ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP 387
Query: 1108 PVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAAR 1167
P +G V LDG DL+ ++ L H+G + Q+ +F TI ENI A +V EAAR
Sbjct: 388 PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAAR 447
Query: 1168 IANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESES 1227
+A H I LP GYDT +G G L+ GQ+QRIA+AR + + +++LDE +S+++SE
Sbjct: 448 LAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG 507
Query: 1228 SRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
+ A+ T ++IAHR + + VD I+VL GRI G + +LAK
Sbjct: 508 EAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 7e-41
Identities = 97/316 (30%), Positives = 166/316 (52%), Gaps = 20/316 (6%)
Query: 230 ALQ---LWVGRFLVTHNKAHGGEIVTALFAVILSGLGL---NQAATNFYSFDQGRIAAYR 283
ALQ L +G +LV + G ++ ILSG L + A N+ F R + R
Sbjct: 255 ALQSAVLGLGAWLVIKGEITPGMMIAG---SILSGRALAPIDLAIANWKQFVAARQSYKR 311
Query: 284 LYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRP---EIPILSGFYLTVPAKKAV 340
L E+++ + + LP+ G + + + P + PIL G + A +A+
Sbjct: 312 LNELLAELPA--AAERMPLPAPQGALSVERLTAA----PPGQKKPILKGISFALQAGEAL 365
Query: 341 ALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLS 400
++G +GSGKS++ L+ + PT G V LDG +++ E L IG + Q+ L +
Sbjct: 366 GIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425
Query: 401 IRDNIA-YGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459
I +NIA +G +A +++ EAA++A H I L +GY+T++G G L+ Q+ ++++AR
Sbjct: 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485
Query: 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRNADYIAVMD 518
A+ +P +++LDE LD E E A+ A+ G + ++IA R S + + D I V+
Sbjct: 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQ 545
Query: 519 EGRLFEMGTHDELLAT 534
+GR+ G +E+LA
Sbjct: 546 DGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 1e-39
Identities = 70/212 (33%), Positives = 121/212 (57%), Gaps = 2/212 (0%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
T+PA + +ALVG +G+GK+S++ + F P G + ++G ++ L E R + V
Sbjct: 371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVG 429
Query: 392 QEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450
Q P L ++RDN+ G DA+ +Q+++A + A F+ L +G +T +G L+
Sbjct: 430 QNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVG 489
Query: 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN 510
Q +L++ARA+L +LLLDE T LD +E+ V +AL+ ++T+++ +L +
Sbjct: 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ 549
Query: 511 ADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542
D I VM +G++ + G + EL G L+A LL
Sbjct: 550 WDQIWVMQDGQIVQQGDYAELSQAGGLFATLL 581
|
Length = 588 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-39
Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 25/225 (11%)
Query: 1052 GSIELKNVDFCY-PSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA 1110
G IE++N+ Y P P VL N S KV G+ + +VG +G+GKST+I + RF +
Sbjct: 5 GEIEVENLSVRYAPDLPPVL--KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1111 GQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI-IYARHNASEAEVKEAARIA 1169
G++ +DG D+ L LR+ L ++ Q+P +FS TIR N+ + + S+ E+ A R++
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY--SDEEIYGALRVS 120
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
G++L+ GQ+Q + +AR +LK +L+LDEA++SI+ +
Sbjct: 121 EG------------------GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 1230 VVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274
++Q+ + N T + IAHR + D I+V++ G + E
Sbjct: 163 LIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 3e-38
Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 46/222 (20%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ + NV F YP + + VL N SL++ G+ +A++G SGSGKST++ L+ P G++
Sbjct: 1 LSINNVSFSYPEQEQQ-VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
LDG + + L + + ++ Q P +F TT+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
G + G++QR+A+AR++L++API+LLDE + ++ + R +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITER---Q 136
Query: 1234 ALDTL--IMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG 1273
L + ++ +KT I I H + H+D I+ L G+I+ +G
Sbjct: 137 LLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 5e-38
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 43/216 (19%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++NV F YP VL N S + G+++A++G SGSGKST+ LI P +G+V
Sbjct: 1 LEVENVSFRYPGAEPP-VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
LDG D+ ++ L +H+G + Q+ +FS +I ENI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
L+ GQ+QR+ +AR + N IL+LDE +S ++ E R + +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 1234 ALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRI 1269
A+ L T I+IAHR + D I+VL GR+
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 74/219 (33%), Positives = 112/219 (51%), Gaps = 13/219 (5%)
Query: 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114
ELKN+ F YP L + SL + G+ V +VG +GSGKST++ L+ P +G+VL
Sbjct: 1 ELKNLSFSYPDGARP-ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1115 LDGRDLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNA--SEAEVKEAARIAN 1170
+DG+DL +L+ LR +GLV Q P F T+ E + + N E E++E A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
+ L L+ GQKQR+AIA V+ + ILLLDE ++ ++ R
Sbjct: 120 ELVGLEGLRD-RSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 1231 VQEALDTLIMGNKTTILIAHR-AAMMRHVDNIVVLNGGR 1268
+ E L L KT I++ H ++ D ++VL G+
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 6e-36
Identities = 77/241 (31%), Positives = 117/241 (48%), Gaps = 32/241 (13%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----P 363
IE R++ Y + L L +P + AL+G +G GKS+++ L+ R D P
Sbjct: 1 IELRDLNVYY---GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 364 TLGEVLLDGENIKNLK--LEWLRSQIGLVTQEPALLSLSIRDNIAYG-RDATLDQIEEAA 420
GEVLLDG++I +L + LR ++G+V Q+P SI DN+AYG R + EE
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 421 KIAHAHTFISSLEK-GYETQVGR--AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
+ +L K +V L L+ Q+ +L +ARA+ P +LLLDE T L
Sbjct: 118 ERVE-----EALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172
Query: 478 DFEAERAVQEALDLLMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFEMGTHDE 530
D + ++E + L TI+I A R+ AD A + GRL E G ++
Sbjct: 173 DPISTAKIEELIAELK-KEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLVEFGPTEQ 226
Query: 531 L 531
+
Sbjct: 227 I 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-35
Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 19/219 (8%)
Query: 1054 IELKNVDFCYPSRPEV--LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
I +++ F + S + L + +L+V G+ VA+VG GSGKS+++S + + ++G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIY-ARHNASEAEVKEAARIAN 1170
V + G + V QEP I + TIRENI++ + E ++ +
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFD--EERYEKVIKACA 105
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR- 1229
+ LP G T +G +G++L+ GQKQRI++AR V +A I LLD+ S++++ R
Sbjct: 106 LEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRH 165
Query: 1230 VVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGR 1268
+ + + L++ NKT IL+ H+ ++ H D IVVL+ GR
Sbjct: 166 IFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-34
Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 21/223 (9%)
Query: 306 HGNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
HG IE N+ Y P++P +L V A + + +VGR G+GKS++I + RF +
Sbjct: 4 HGEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAH 424
G++ +DG +I + LE LRS + ++ Q+P L S +IR N+ + + ++I A +++
Sbjct: 62 EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSE 121
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
GL L++ Q+ L +ARA+L P +L+LDE T +D+ +
Sbjct: 122 ------------------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 485 VQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527
+Q+ + + + IA RL I + D I VMD G + E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 6e-34
Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 40/241 (16%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
IEL++++ Y + L + SL + G+ A++G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1109 VAGQVLLDGRDLKL--YNLRWLRNHLGLVQQEPIIFSTTIRENIIYA-------RHNASE 1159
G+VLLDG+D+ ++ LR +G+V Q+P F +I +N+ Y +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1160 AEVKEAARIANAHHFISSLPHGYDTHVGMR--GVDLTPGQKQRIAIARVVLKNAP-ILLL 1216
V+EA R A V R + L+ GQ+QR+ +AR L N P +LLL
Sbjct: 118 ERVEEALRKA-----------ALWDEVKDRLHALGLSGGQQQRLCLAR-ALANEPEVLLL 165
Query: 1217 DEASSSIESESSRVVQEALDTLIMGNKTTILIA----HRAAMMRHVDNIVVLNGGRIVEE 1272
DE +S+++ S+ ++E + L + TI+I +AA R D L GR+VE
Sbjct: 166 DEPTSALDPISTAKIEELIAEL--KKEYTIVIVTHNMQQAA--RVADRTAFLLNGRLVEF 221
Query: 1273 G 1273
G
Sbjct: 222 G 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 7e-34
Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 23/227 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE K V + S +L + S+K GG +VG SG+GKST+I LI R DP G +
Sbjct: 4 IEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
L+DG D+K ++ LR +G+V Q+P +F T+++NI Y E V + +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV-------DVEY 113
Query: 1174 FISSLPHGYDTHVGMRGV-DLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
++S + G + R V +L+ G+ QR++IAR + N +LLLDE +S+++ S+ +++
Sbjct: 114 YLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 1233 EALDTLIMG-----NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
E LI+ N T I I H + + D LN G +VE
Sbjct: 172 E----LIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 7e-33
Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 43/242 (17%)
Query: 1054 IELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKST---IISLIERFYDPV 1109
IELKNV Y E V L + +L++ G+ VA+VG SGSGKST ++ +++ P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 1110 AGQVLLDGRDL------KLYNLRWLRNHLGLV-QQEPIIFSTTIRENI----IYARHNAS 1158
+G+VL++G+DL +L LR R +G V Q ++ T+ EN+ + A +A
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLR--RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG 116
Query: 1159 EAE--VKEAARIAN-----AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA 1211
+ +E + S L G GQ+QR+AIAR ++ N
Sbjct: 117 RRKRAAEELLEVLGLEDRLLKKKPSEL-SG--------------GQQQRVAIARALINNP 161
Query: 1212 PILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIA-HRAAMMRHVDNIVVLNGGRIV 1270
I+L DE + +++S++++ V E L L TI++ H + ++ D ++ L G+I
Sbjct: 162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221
Query: 1271 EE 1272
EE
Sbjct: 222 EE 223
|
Length = 226 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 8e-33
Identities = 77/284 (27%), Positives = 121/284 (42%), Gaps = 17/284 (5%)
Query: 727 WLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTV 786
L A+L I A PLL + E + L I + V +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDER-------SSLISLAILLIAVGVL 53
Query: 787 VANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDE--EENSADTLSMRLANDATFV 844
LQ ++ GE++ +R+R+ +F A+LR +G + NS L+ RL ND + +
Sbjct: 54 QGLLLQGSFYL--GERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKI 111
Query: 845 RAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRG 904
R ++L +F Q A V+ I+ W+L LV LA LP+L L + L +R
Sbjct: 112 RDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRK 171
Query: 905 IQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFS 964
QK + KA V E+++ I TV AF +E Y L+ + G +FG +
Sbjct: 172 EQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGIT 231
Query: 965 QFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALV 1008
Q + + AL LW+ V G + + VF+F + L
Sbjct: 232 QLISYLSYALALWFGAYLVISGGLSV------GTVFAFLSLGLQ 269
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 17/231 (7%)
Query: 1054 IELKNVDFCYPSR--PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
IEL+NV + V L + SL++ G+ ++G SG+GKST++ LI P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1112 QVLLDGRDLKLYN---LRWLRNHLGLVQQEPIIFST-TIRENIIYAR--HNASEAEVKEA 1165
V +DG+DL + LR LR +G++ Q + S+ T+ EN+ + +AE+K
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK-- 119
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
R+A + G L+ GQKQR+AIAR + N ILL DEA+S+++
Sbjct: 120 QRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 1226 ESSRVVQEALDTLIMGNKTTI-LIAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
E+++ + E L + TI LI H +++ + D + VL+ GR+VEEGT
Sbjct: 175 ETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 6e-32
Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 40/218 (18%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ NV FSY + + +L L + + +AL+GR+GSGKS+++ L+ P GE+
Sbjct: 1 LSINNVSFSYPEQEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTF 428
LDG + +L+ + L S I ++ Q P L ++R+N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488
G + ++ +L++AR +L + I+LLDE T GLD ER +
Sbjct: 96 ---------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140
Query: 489 LDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526
+ ++ ++ I I L+ I + D I ++ G++ G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 7e-32
Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 11/233 (4%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE++N+ Y + L S +V G+ ++G +G+GK+T++ ++ P +G++
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAH 1172
L+ G D+ +R +G V QEP ++ T+REN+ + A + +
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFF---ARLYGLSKEEAEERIE 118
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
+ G + + L+ G KQR++IA +L + +L+LDE +S ++ ES R +
Sbjct: 119 ELLELF--GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176
Query: 1233 EALDTL-IMGNKTTILIAHR-AAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNG 1283
E L L G T +L H D +++LN G+I+ EGT + L K G
Sbjct: 177 ELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
|
Length = 293 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 25/229 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ELK + Y S V L + SL V G+ +A++G SG GK+T++ LI P +G++
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYA--RHNASEAE----VKEAA 1166
L+DGRD+ + R ++G+V Q+ +F T+ ENI + +AE V+E
Sbjct: 58 LIDGRDVT--GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+ ++ PH L+ GQ+QR+A+AR + + +LLLDE S+++++
Sbjct: 116 ELVGLEGLLNRYPHE-----------LSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 1227 SSRVVQEALDTLIMGNK-TTILIAH-RAAMMRHVDNIVVLNGGRIVEEG 1273
++E L L TTI + H + + D I V+N GRIV+ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 3e-31
Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 23/223 (10%)
Query: 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369
E +N+ FSY P L LT+ + V +VG NGSGKS+++ L+ PT GEVL
Sbjct: 1 ELKNLSFSY-PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 370 LDGENIKNLKLEWLRSQIGLVTQEPA--LLSLSIRDNIAYG-RDATLDQIEEAAKIAHAH 426
+DG+++ L L+ LR ++GLV Q P ++ + +A+G + L + E ++ A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEA- 118
Query: 427 TFISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
LE VG GL L+ QK +++IA + ++P ILLLDE T GLD
Sbjct: 119 -----LE-----LVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 481 AERAVQEAL-DLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR 521
R + E L L G++ II+ L L+ AD + V+++G+
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-30
Identities = 67/239 (28%), Positives = 119/239 (49%), Gaps = 33/239 (13%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE RN+ Y + L G V + L+G NG+GK++++ ++ PT GE+
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAY-------GRDATLDQIEEAA 420
L+ G ++ + R +IG V QEP+L L++R+N+ + ++ ++IEE
Sbjct: 63 LVLGYDVVKEPAKV-RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 421 KIAH----AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
++ A+ + +L G K +LSIA A+L +P +L+LDE T G
Sbjct: 122 ELFGLEDKANKKVRTLSGG---------------MKQRLSIALALLHDPELLILDEPTSG 166
Query: 477 LDFEAERAVQEAL-DLLMLGRSTIIIARRLS--LIRNADYIAVMDEGRLFEMGTHDELL 532
LD E+ R + E L +L G TI+++ + D + ++++G++ GT +EL
Sbjct: 167 LDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225
|
Length = 293 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 1e-30
Identities = 72/245 (29%), Positives = 144/245 (58%), Gaps = 10/245 (4%)
Query: 1046 KPPNVY---GSIELKNVDFCYPSRPEV-LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISL 1101
PP+ + G +E +N +C R ++ LVL + ++ ++GG+ V +VG +G+GKS++
Sbjct: 1274 APPSGWPPRGRVEFRN--YCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLG 1331
Query: 1102 IERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI-IYARHNASEA 1160
+ R + G++++DG ++ L LR + ++ Q+P++FS ++R N+ ++++ S+
Sbjct: 1332 LFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQY--SDE 1389
Query: 1161 EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
EV A +A+ F+S+LP D G +L+ GQ+Q + +AR +L+ IL+LDEA+
Sbjct: 1390 EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT 1449
Query: 1221 SSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
++++ E+ ++Q + T + T + IAHR + ++VL+ G + E G +LL
Sbjct: 1450 AAVDLETDNLIQSTIRTQ-FEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
Query: 1281 KNGLY 1285
+ G++
Sbjct: 1509 QRGIF 1513
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 75/244 (30%), Positives = 138/244 (56%), Gaps = 8/244 (3%)
Query: 1052 GSIELKNVDFCYPS--RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV 1109
G I++ ++ Y + +P VL + + GQ V + G +GSGKS++ R D
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 1110 AGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIA 1169
G++++DG D+ L LR+ L ++ Q+PI+FS +IR N+ ++ + EA IA
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIA 133
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
+ + SLP G D V G + + GQ+Q +AR ++ + IL++DEA++SI+ +
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 1230 VVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA-KNGLYVRL 1288
++Q+ + T ++T + IAHR + + D ++VL+ G +VE T ++LLA ++G++ L
Sbjct: 194 ILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252
Query: 1289 MQPH 1292
++
Sbjct: 253 VRTD 256
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 82/245 (33%), Positives = 127/245 (51%), Gaps = 33/245 (13%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE R + S+ R +L G L V + +A++G +GSGKS+++ L+ P GEV
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 369 LLDGENIKNLK---LEWLRSQIGLVTQEPALL-SLSIRDNIAYG-RDATLDQIEEAAKIA 423
L+DGE+I L L LR ++G++ Q AL SL++ +N+A+ R+ T EE +I
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQK-IKLS--------IARAVLLNPSILLLDEVT 474
LEK + GL E+ +LS +ARA+ L+P +LL DE T
Sbjct: 118 --------LEK-----LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 475 GGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531
GLD A + + + L LG ++I++ L AD IAV+ +G++ GT +EL
Sbjct: 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
Query: 532 LATGD 536
A+ D
Sbjct: 225 RASDD 229
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 43/215 (20%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E NV F Y P+L ++ +++A++G +GSGKS++ L+ PT G V
Sbjct: 1 LEVENVSFRYPGAEP-PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTF 428
LDG +I L +G + Q+ L S SI +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488
L+ Q+ +L +ARA+ NP IL+LDE LD E ERA+ +A
Sbjct: 97 ------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 489 L-DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRL 522
+ L G + I+IA R + +AD I V+++GR+
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 24/240 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE +N+ F YP R L + SL++ G+ V ++G +GSGKST++ L+ P +G+V
Sbjct: 4 IEAENLSFRYPGRKAAL--KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1114 LLDGRDLKL-YNLRWLRNHLGLVQQEPI--IFSTTIRENIIYA--RHNASEAE----VKE 1164
L+DG D +L LR +GLV Q P +F T+ + + + E V E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
A + + P +L+ GQKQR+AIA V+ ILLLDE ++ ++
Sbjct: 122 ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 1225 SESSRVVQEALDTLI-MGNKTTILIAHRAA-MMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282
+ R + E L L G KT I++ H ++ + D +VVL+ G+I+ +G +
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-30
Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 33/238 (13%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+E++N+ F Y +P +L + S + G+ ++G +GSGKST++ + P +G+
Sbjct: 2 MLEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPII-FSTTIRENIIYARHN----------ASEAE 1161
VLLDG+D+ + + L L V Q P F T+ E ++ R+ E
Sbjct: 59 VLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVD-LTPGQKQRIAIARVVLKNAPILLLDEAS 1220
V+EA + H R VD L+ G++QR+ IAR + + PILLLDE +
Sbjct: 119 VEEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPT 166
Query: 1221 SSIESESSRVVQEALDTL-IMGNKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGT 1274
S ++ V E L L T +++ H AA R+ D++++L G+IV +GT
Sbjct: 167 SHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAA--RYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 33/240 (13%)
Query: 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+E+KN+ +P+ V L + S + G+T+ +VG SGSGKST+ I P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1113 VLLDGRDLKLYN---LRWLRNHLGLVQQEPIIFST-----TIRENI---IYARHNASEAE 1161
++ DG+DL + + R + +V Q+P S+ TI E I + S+ E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 1162 VKEAARIANAHH------FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILL 1215
++ A + ++ PH +L+ GQ+QR+AIAR + N +L+
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLI 168
Query: 1216 LDEASSSIESESSRVVQEALDTLIMGNKTTIL-IAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
DE +S+++ + + L L T+L I H ++ + D + V+ G+IVEEG
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 68/234 (29%), Positives = 121/234 (51%), Gaps = 6/234 (2%)
Query: 276 QGRIAAYRLYEMISRSSSTTNYDG---NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYL 332
+ R AA R+ E++ + + +E R++ Y P P+L G L
Sbjct: 299 RVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSL 356
Query: 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQ 392
+P + VA++G +GSGKS+++ + DP GEV LDG + +L + +R ++ + Q
Sbjct: 357 DLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
Query: 393 EPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451
+ L ++R+N+ R DAT +++ A + ++ +L G +T +G G L+ +
Sbjct: 417 DAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
+ +L++ARA+L + ILLLDE T LD E + E L + GR+ ++I L
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 74/241 (30%), Positives = 108/241 (44%), Gaps = 24/241 (9%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE N+ F Y L L + + V L+G NGSGKS+++ L+ PT GEV
Sbjct: 4 IEAENLSFRY--PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 369 LLDGENIKNLKLEW-LRSQIGLVTQEPA--LLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425
L+DG + + K LR ++GLV Q P L ++ D +A+G +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG--LENLGLPREEIEERV 119
Query: 426 HTFISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
VG L L+ QK +++IA + + P ILLLDE T GLD
Sbjct: 120 --------AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 480 EAERAVQEALDLLMLGR-STIIIA-RRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGD 536
+ R + E L L TIII L L+ AD + V+D+G++ G E+ +
Sbjct: 172 KGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
Query: 537 L 537
L
Sbjct: 232 L 232
|
Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 66/220 (30%), Positives = 104/220 (47%), Gaps = 47/220 (21%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ELKNV Y + VL++ SL + G+ VA++G SGSGKST++ I +P +G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1114 LLDGRDLKLYN--LRWLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIAN 1170
L+DG DL L LR +G+V Q+ +F T+ ENI
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
L+ GQ+QR+A+AR + + +LLLDE +S+++ + R
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 1231 VQEALDTLI-MGNKTTILIAHRAAMMRHV-DNIVVLNGGR 1268
V+ L +L T +L+ H + D +VVL G+
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 3e-29
Identities = 80/253 (31%), Positives = 123/253 (48%), Gaps = 39/253 (15%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IEL+ + + R VL L V G+ +A++G SGSGKST++ LI P +G+V
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1114 LLDGRD---LKLYNLRWLRNHLGLVQQEPIIF-STTIRENI---IYARHNASEAEVKEAA 1166
L+DG D L L LR +G++ Q +F S T+ EN+ + SE E++E
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 1167 RIANAHHFISSLPHGYDTHVGMRG-VDLTP-----GQKQRIAIARVVLKNAPILLLDEAS 1220
+ + VG+RG DL P G K+R+A+AR + + +LL DE +
Sbjct: 118 L-----EKLEA--------VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 1221 SSIESESSRVVQEALDTLIM-----GNKTTILIAHR-AAMMRHVDNIVVLNGGRIVEEGT 1274
+ ++ +S V+ + LI T+I++ H D I VL G+IV EGT
Sbjct: 165 AGLDPIASGVIDD----LIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
Query: 1275 HDSLLAKNGLYVR 1287
+ L A + VR
Sbjct: 221 PEELRASDDPLVR 233
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 4e-29
Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 37/244 (15%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP----- 363
IE R++ Y + L L +P K AL+G +G GKS+++ + R D
Sbjct: 8 IEVRDLNLYYGDKH---ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 364 TLGEVLLDGENI--KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG------RDATLDQ 415
GEVLLDG+NI + + LR ++G+V Q+P +SI DN+AYG +D LD+
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 416 I-EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474
I E + K A +L + ++ ++ L L+ Q+ +L IARA+ + P +LL+DE T
Sbjct: 125 IVESSLKKA-------ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 475 GGLDFEAERAVQEALDLLMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFEMGT 527
LD + ++E + L + TI+I A R+S DY A G L E G
Sbjct: 178 SALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVS-----DYTAFFYLGELVEFGP 231
Query: 528 HDEL 531
D++
Sbjct: 232 TDKI 235
|
Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 5e-29
Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 30/244 (12%)
Query: 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
IELKNV + +V L + SL V G+ ++G SG+GKST+I I P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1113 VLLDGRDLKLYN---LRWLRNHLGLVQQEPIIFST-TIRENIIYAR--HNASEAEVKEAA 1166
VL+DG DL L + LR R +G++ Q + S+ T+ EN+ +AE++E
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1167 R----IANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
+ + P L+ GQKQR+ IAR + N +LL DEA+S+
Sbjct: 122 LELLELVGLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1223 IESESSRVVQEALDTLIMGNK----TTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDS 1277
++ E+++ + L + N+ T +LI H +++ + D + V+ G +VEEGT +
Sbjct: 171 LDPETTQSILALLRDI---NRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
Query: 1278 LLAK 1281
+ A
Sbjct: 228 VFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 7e-29
Identities = 77/238 (32%), Positives = 139/238 (58%), Gaps = 15/238 (6%)
Query: 1052 GSIELKNVDFCYPSRPEVL-VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA 1110
GSI+ ++V Y RPE+ VL S +++ + V +VG +G+GKS++++ + R +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 1111 GQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI-IYARHNASEAEVKEAARIA 1169
G++L+DG D+ + L LR LG++ Q P++FS T+R N+ + HN +A++ E+ A
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHN--DADLWESLERA 1351
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
+ I G D V G + + GQ+Q +++AR +L+ + IL+LDEA+++++ +
Sbjct: 1352 HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411
Query: 1230 VVQ----EALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNG 1283
++Q E + M ++IAHR + D I+VL+ GR+VE T ++LL+ G
Sbjct: 1412 LIQKTIREEFKSCTM-----LIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEG 1464
|
Length = 1622 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 8e-29
Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 23/235 (9%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I+ NV FSY E L + + VA++G NGSGKS+I ++ P GE+
Sbjct: 8 IKVENVSFSY-PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYG-------RDATLDQIEEA 419
+DG I L+ +R +IG++ Q P + ++ D+IA+G D I++
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
AK + G E + + L+ QK +++IA + LNP I++ DE T LD
Sbjct: 127 AK-----------KVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 480 EAERAVQEAL-DLLMLGRSTII-IARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532
+ +R +++ + DL + T+I I + AD + V EG+L G E+L
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-28
Identities = 74/187 (39%), Positives = 115/187 (61%), Gaps = 9/187 (4%)
Query: 366 GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAH 424
G++LLDG +I + L+ LR+ +V+QEP L ++SI +NI +G+ DAT + ++ A K A
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA 1336
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
FI SL Y+T VG G +L+ QK +++IARA+L P ILLLDE T LD +E+
Sbjct: 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
Query: 485 VQEAL-DLLMLGRSTII-IARRLSLIRNADYIAVMDE----GRLFEM-GTHDELLATGD- 536
+++ + D+ TII IA R++ I+ +D I V + G + GTH+ELL+ D
Sbjct: 1397 IEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDG 1456
Query: 537 LYAELLK 543
+Y + +K
Sbjct: 1457 VYKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 73/240 (30%), Positives = 123/240 (51%), Gaps = 25/240 (10%)
Query: 309 IEFRNVYFSYLSR--PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
IE NV ++ + L L +P + ++G +G+GKS+++ L+ PT G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 367 EVLLDGENIKNLK---LEWLRSQIGLVTQEPALL-SLSIRDNIAYG-RDATLDQIEEAAK 421
V +DG+++ L L LR +IG++ Q LL S ++ +N+A+ A + + E +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 422 IAHAHTF--ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
+A +S Y Q L+ QK +++IARA+ NP ILL DE T LD
Sbjct: 122 VAELLELVGLSDKADRYPAQ-------LSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 480 EAERAVQEALDLLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
E +++ L+LL LG + ++I + +++ D +AV+D+GRL E GT E+ A
Sbjct: 175 ETTQSI---LELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231
|
Length = 339 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-28
Identities = 72/242 (29%), Positives = 129/242 (53%), Gaps = 21/242 (8%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+I +KN F + S+ E LSN +L V G VA+VG +G GK+++IS + P +
Sbjct: 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIY-ARHNASEAEVKEAARIANA 1171
++ +R + V Q IF+ T+R+NI++ + + E A +
Sbjct: 674 SVV------------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYE--RAIDVTAL 719
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
H + LP G T +G RGV+++ GQKQR+++AR V N+ + + D+ S++++ V
Sbjct: 720 QHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAH---VG 776
Query: 1232 QEALDTLI---MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288
++ D I + KT +L+ ++ + VD I++++ G I EEGT++ L L+ +L
Sbjct: 777 RQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKL 836
Query: 1289 MQ 1290
M+
Sbjct: 837 ME 838
|
Length = 1622 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-28
Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 3/231 (1%)
Query: 307 GNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL 365
G+I+F +V Y RPE+P +L G + + V +VGR G+GKSS++ + R +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 366 GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425
G +L+DG +I L LR +G++ Q P L S ++R N+ + + E+ + AH
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHL 1353
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
I G + +V AG + Q+ LS+ARA+L IL+LDE T +D + +
Sbjct: 1354 KDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536
Q+ + + +IIA RL+ I + D I V+D GR+ E T + LL+
Sbjct: 1414 QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEG 1464
|
Length = 1622 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 32/233 (13%)
Query: 1054 IELKNVDFCYPS-RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+E++NV Y V L + SL V G+ VA+VG SG GKST++ +I P +G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYA--RHNASEAEVKEAAR-- 1167
VL+DG + G V Q+ + T+ +N+ +AE +E A
Sbjct: 61 VLVDGEP-----VTGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 1168 IANAH--HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
+ F ++ PH L+ G +QR+A+AR + + +LLLDE S++++
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 1226 ESSRVVQEALDTLIMGN-KTTILIAH---RAAMMRHVDNIVVLNG--GRIVEE 1272
+ +QE L + KT +L+ H A + D +VVL+ GRIV E
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFL--ADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 27/232 (11%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+ELKNV + S VL + +L + G+ V ++G SG GKST++ +I +P +G+
Sbjct: 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARHNAS------EAEVKEA 1165
+L+DGRD+ +L + + +V Q ++ T+ ENI + + VKE
Sbjct: 60 ILIDGRDVT--DLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
A++ H ++ P + L+ GQ+QR+A+AR +++ + LLDE S++++
Sbjct: 118 AKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHR---AAMMRHVDNIVVLNGGRIVEEGT 1274
+ +++ + L TT + AM D IVV+N GRI + GT
Sbjct: 167 KLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL-ADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 4e-28
Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 18/226 (7%)
Query: 1054 IELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKST---IISLIERFYDPV 1109
IELKN+ Y E V L SL + G+ VA+VG SGSGKST I+ ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1110 AGQVLLDGRDLKLYNLRWL----RNHLGLV-QQEPIIFSTTIRENIIYARHNASEAEVKE 1164
+G+V +DG D+ + + L R H+G V Q ++ T EN+ A V +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPK 114
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
R A + + G + +L+ GQ+QR+AIAR + + I+L DE + +++
Sbjct: 115 KERRERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 1225 SESSRVVQEALDTLIMGNKTTILIA-HRAAMMRHVDNIVVLNGGRI 1269
SE+ + V E L L TTI++ H + + D I+ L G+I
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-28
Identities = 76/280 (27%), Positives = 125/280 (44%), Gaps = 41/280 (14%)
Query: 1022 KSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRP--------EVLVLS 1073
+ L++ + I P + ++N+ Y SR EV +
Sbjct: 252 RGLLAAVPRLGDEKIIRL---PRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVD 308
Query: 1074 NFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY--NLRWLRNH 1131
+ S + G+T+ +VG SGSGKST+ ++ P +G ++ DG+DL L LR LR
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR 368
Query: 1132 LGLVQQEPIIFST-----TIRENIIYARHNASEAEVKEA-ARIANA-------HHFISSL 1178
+ +V Q+P +S+ T+ + + E AR+A F+
Sbjct: 369 IQMVFQDP--YSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426
Query: 1179 PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTL 1238
PH +L+ GQ+QR+AIAR + +L+LDE S+++ V L L
Sbjct: 427 PH-----------ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475
Query: 1239 IMGNKTTIL-IAHRAAMMRHV-DNIVVLNGGRIVEEGTHD 1276
T L I+H A++R++ D + V+ GRIVEEG +
Sbjct: 476 QEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515
|
Length = 539 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 7e-28
Identities = 72/238 (30%), Positives = 125/238 (52%), Gaps = 3/238 (1%)
Query: 307 GNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL 365
G +EFRN Y R ++ +L +T+ + V +VGR G+GKSS+ + R +
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 366 GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425
GE+++DG NI + L LR +I ++ Q+P L S S+R N+ + +++ A ++AH
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHL 1400
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
TF+S+L + + G L+ Q+ + +ARA+L IL+LDE T +D E + +
Sbjct: 1401 KTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI 1460
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543
Q + + + IA RL+ I + + V+D+G + E G LL ++ + K
Sbjct: 1461 QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAK 1518
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 76/238 (31%), Positives = 123/238 (51%), Gaps = 2/238 (0%)
Query: 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
G I+ ++ Y + + P+L + + V + GR GSGKSS+ R D G
Sbjct: 18 GEIKIHDLCVRYENNLK-PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG 76
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAH 426
++++DG +I L L LRS++ ++ Q+P L S SIR N+ T D++ EA +IA
Sbjct: 77 KIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLK 136
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
+ SL G + V G + Q+ +ARA + SIL++DE T +D E +Q
Sbjct: 137 NMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 487 EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAELLK 543
+ + R+ + IA R+S I +AD + V+ G L E T + LLA D ++A L++
Sbjct: 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-27
Identities = 67/214 (31%), Positives = 95/214 (44%), Gaps = 59/214 (27%)
Query: 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369
E N+ F Y L LT+ A + VALVG NGSGKS+++ + PT GE+L
Sbjct: 1 EIENLSFRY---GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 370 LDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFI 429
+DG++I L LE LR +IG V Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ------------------------------------- 80
Query: 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
L G + Q++ ++ARA+LLNP +LLLDE T GLD + + E L
Sbjct: 81 --LSGG-------------QRQRV--ALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123
Query: 490 -DLLMLGRSTIIIARRLSLIRNA-DYIAVMDEGR 521
+L GR+ II+ L A D + V+ +G+
Sbjct: 124 RELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-27
Identities = 77/254 (30%), Positives = 146/254 (57%), Gaps = 14/254 (5%)
Query: 1039 PDDSSAV----KPPNVY---GSIELKNVDFCYPSRPEVL-VLSNFSLKVNGGQTVAVVGV 1090
P +++A+ +P + + GSI+ ++V Y RP + VL S V+ + V VVG
Sbjct: 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGR 1270
Query: 1091 SGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI 1150
+G+GKS++++ + R + G++++D D+ + L LR L ++ Q P++FS T+R NI
Sbjct: 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330
Query: 1151 -IYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209
++ HN +A++ EA A+ I P G D V G + + GQ+Q +++AR +L+
Sbjct: 1331 DPFSEHN--DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388
Query: 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRI 1269
+ IL+LDEA++S++ + ++Q + + T ++IAHR + D I+VL+ G++
Sbjct: 1389 RSKILVLDEATASVDVRTDSLIQRTIREEFK-SCTMLVIAHRLNTIIDCDKILVLSSGQV 1447
Query: 1270 VEEGTHDSLLAKNG 1283
+E + LL+++
Sbjct: 1448 LEYDSPQELLSRDT 1461
|
Length = 1495 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 68/244 (27%), Positives = 119/244 (48%), Gaps = 10/244 (4%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF NV Y ++ L + + + L+G +GSGK++ + ++ R +PT GE+
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHT 427
+DGE+I+ LR +IG V Q+ L +++ +NIA L + + A
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL--VPKLLKWPKEKIRERADE 116
Query: 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487
++ + R L+ Q+ ++ +ARA+ +P +LL+DE G LD +QE
Sbjct: 117 LLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176
Query: 488 ALDLL--MLGRSTIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDELLAT--GDLYAELL 542
L LG++ + + + R AD IA+M G + ++GT DE+L + D AE +
Sbjct: 177 EFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFV 236
Query: 543 KCEE 546
+
Sbjct: 237 GADR 240
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-27
Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 29/239 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I+++NV F YP+ E L N S ++N G+ VA++G +GSGKSTI ++ P +G++
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEP------------IIFSTTIRENIIYARHNASEAE 1161
+DG + NL+ +R +G++ Q P I F EN +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL---ENKKVPP-KKMKDI 122
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
+ + A+ ++ P +L+ GQKQR+AIA V+ N I++ DE++S
Sbjct: 123 IDDLAKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTS 171
Query: 1222 SIESESSRVVQEALDTLI-MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
++ + R +++ + L KT I I H D ++V + G+++ +G +L
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 39/248 (15%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE++N+ YP+ L + SL +N G+ VA++G SG+GKST++ + +P +G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1114 LLDGRD---LKLYNLRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNASEAEVKEAARIA 1169
L+DG D LK LR LR +G++ QQ +I ++ EN++ R
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------L 104
Query: 1170 NAHHFISSLPHGYDTH-----------VGM------RGVDLTPGQKQRIAIARVVLKNAP 1212
SL + VG+ R L+ GQ+QR+AIAR +++
Sbjct: 105 GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164
Query: 1213 ILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAM-MRHVDNIVVLNGGRIV 1270
++L DE +S++ SSR V + L + T I+ H+ + + D IV L GRIV
Sbjct: 165 LILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
Query: 1271 EEGTHDSL 1278
+G L
Sbjct: 225 FDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 4e-27
Identities = 66/220 (30%), Positives = 108/220 (49%), Gaps = 23/220 (10%)
Query: 309 IEFRNVYFSYLSRPEI--PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
I + F++ S + L L VP + VA+VG GSGKSS++ + LG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL-------LG 53
Query: 367 EV-LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQ--IEEAAKIA 423
E+ L G + I V+QEP + + +IR+NI +G D+ E+ K
Sbjct: 54 ELEKLSGS-------VSVPGSIAYVSQEPWIQNGTIRENILFG--KPFDEERYEKVIKAC 104
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
+ L G T++G G+ L+ QK ++S+ARAV + I LLD+ +D R
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 484 AV-QEAL-DLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521
+ + + LL+ ++ I++ +L L+ +AD I V+D GR
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-27
Identities = 84/275 (30%), Positives = 134/275 (48%), Gaps = 45/275 (16%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE R V S+ R IL G L VP + +A++G +GSGKS+++ L+ P GE+
Sbjct: 9 IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 369 LLDGENIKNLK---LEWLRSQIGLVTQEPALL-SLSIRDNIAYG--RDATLDQ--IEEAA 420
L+DGE+I L L +R ++G++ Q+ AL SL++ +N+A+ L + I E
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 421 --KI-------AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471
K+ A A + S L G +V +ARA+ L+P +L LD
Sbjct: 126 LMKLELVGLRGAAADLYPSELSGGMRKRVA---------------LARAIALDPELLFLD 170
Query: 472 EVTGGLDFEAERAVQEALDLLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM 525
E T GLD + +L+ LG + I++ L + AD +AV+ +G++
Sbjct: 171 EPTSGLD---PISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227
Query: 526 GTHDELLATGDLYA-ELLKCEEAAKLPRRMPVRNY 559
GT +ELLA+ D + + +P R P R+Y
Sbjct: 228 GTPEELLASDDPWVRQFFNGIRDGPIPFRYPARDY 262
|
Length = 263 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-27
Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 59/215 (27%)
Query: 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114
E++N+ F Y R L N SL + G+ VA+VG +GSGKST++ I P +G++L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1115 LDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHF 1174
+DG+D+ L L R I Y
Sbjct: 58 IDGKDIAKLPLEEL------------------RRRIGY---------------------- 77
Query: 1175 ISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEA 1234
+P L+ GQ+QR+A+AR +L N +LLLDE +S ++ S + E
Sbjct: 78 ---VPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 1235 LDTLIMGNKTTILIAHRAAM-MRHVDNIVVLNGGR 1268
L L +T I++ H + D ++VL G+
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 8e-27
Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 29/241 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE +NV Y ++ + + +L + G+ + ++G SGSGK+T + +I R +P +G++
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYA------RHNASEAEVKEAA 1166
L+DG D+ + LR +G V Q+ +F T+ ENI + E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 1167 RIA--NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
+ + + PH +L+ GQ+QR+ +AR + + PILL+DE +++
Sbjct: 119 DLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1225 SESSRVVQEALDTLIMG-NKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
+ + +QE + L KT + + H A ++ D I V++ G IV+ T D +LA
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEA--LKLADRIAVMDAGEIVQYDTPDEILA 225
Query: 1281 K 1281
Sbjct: 226 N 226
|
Length = 309 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 59/220 (26%), Positives = 110/220 (50%), Gaps = 25/220 (11%)
Query: 1056 LKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLL 1115
LKN+ + + ++L + +L + G+ A++G SGSGKST++++I +GQV L
Sbjct: 1 LKNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 1116 DGRDLKLYNLR----WLRNHLG-LVQQEPIIFSTTIRENI----IYARHNASEAE--VKE 1164
+G++ N + + R LG L Q +I + T+ EN+ Y + + E KE
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE 117
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
A + + + +L+ G++QR+A+AR +LK P++L DE + S++
Sbjct: 118 ALEKVGLNLKLKQKIY-----------ELSGGEQQRVALARAILKPPPLILADEPTGSLD 166
Query: 1225 SESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVL 1264
++ V + L L KT I++ H + + D ++ L
Sbjct: 167 PKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-26
Identities = 72/248 (29%), Positives = 122/248 (49%), Gaps = 6/248 (2%)
Query: 14 KFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVL 73
+F+D L+ G E ++L I+ IA GV ++ S ++ GER IR R + L
Sbjct: 24 RFLDSLIDGNGDERSSL-ISLAILLIAVGVLQGLLLQGSFYL--GERLGQRIRKRLFRAL 80
Query: 74 LNQDMSFFDTYGNN---GDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNC 130
L Q + ++ + G++ S++ +DV I+ L +K+G + ++AT G + F
Sbjct: 81 LRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYG 140
Query: 131 WQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190
W++ L+ L P ++ + L +L Q AYA+A S+AE+++S IRT+ AF E
Sbjct: 141 WKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREE 200
Query: 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEI 250
Y +L+ + GI ++ GL G T ++ S AL LW G +LV G +
Sbjct: 201 YELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTV 260
Query: 251 VTALFAVI 258
L +
Sbjct: 261 FAFLSLGL 268
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 32/242 (13%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE+KN+ + + VL SL V G+ V ++G SGSGKST++ + +P +G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1114 LLDGRDLKL-YNLRWLRNHLGLVQQEPIIFS-TTIRENIIYAR---HNASEAEVKEAAR- 1167
+DG D+ ++ LR +G+V Q+ +F T+ EN+ A S+AE +E A
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 1168 ------IAN-AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
+A+ A + P L+ GQ+QR+AIAR + + ++L DE +
Sbjct: 120 LLEKVGLADKADAY----PAQ-----------LSGGQQQRVAIARALAMDPKVMLFDEPT 164
Query: 1221 SSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLL 1279
S+++ E V + + L T I++ H R V D ++ ++ G+I+EEG +
Sbjct: 165 SALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224
Query: 1280 AK 1281
Sbjct: 225 DN 226
|
Length = 240 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-26
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 53/221 (23%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE++N+ Y + L + SL V G+ ++G +G+GK+T+I +I P +G++
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAH 1172
+ G+D+K ++ +G + +EP ++ T+REN+ +
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLKLSG------------------ 98
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
G KQR+A+A+ +L + +L+LDE +S ++ ES R
Sbjct: 99 -----------------------GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 1233 EALDTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRI 1269
E L L KT +L +H + D + +LN GRI
Sbjct: 136 ELLRELKKEGKTILLSSHI---LEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-26
Identities = 69/245 (28%), Positives = 123/245 (50%), Gaps = 39/245 (15%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
IE+KN+ YP L + +L++N G+ VA++G SG+GKST++ + DP +G+
Sbjct: 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 1113 VLLDGRDLKLYN---LRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNA----------- 1157
+L +G + LR LR +G++ QQ ++ ++ EN++ R
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 1158 SEAEVKEAARIANAHHFISSLPHGYDTHVGM------RGVDLTPGQKQRIAIARVVLKNA 1211
S+ + +A + +L VG+ R L+ GQ+QR+AIAR +++
Sbjct: 121 SKEDKAQA---------LDAL-----ERVGILDKAYQRASTLSGGQQQRVAIARALVQQP 166
Query: 1212 PILLLDEASSSIESESSRVVQEALDTL-IMGNKTTILIAHRAAM-MRHVDNIVVLNGGRI 1269
I+L DE +S++ ES++ V + L + T I+ H+ + ++ D I+ L GRI
Sbjct: 167 KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226
Query: 1270 VEEGT 1274
V +G
Sbjct: 227 VFDGP 231
|
Length = 258 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 79/245 (32%), Positives = 122/245 (49%), Gaps = 38/245 (15%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----P 363
IE N+ Y E L L +P + AL+G +G GKS+++ + R D
Sbjct: 2 IEIENLNLFY---GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 364 TLGEVLLDGENI--KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG------RD-ATLD 414
G+VL DG++I K + + LR ++G+V Q+P +SI DNIAYG +D LD
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 415 QI-EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473
+I EE+ K A +L + ++ + L L+ Q+ +L IARA+ + P +LLLDE
Sbjct: 119 EIVEESLKKA-------ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171
Query: 474 TGGLDFEAERAVQEALDLLMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFEMG 526
T LD A ++E + L + TI+I A R+S D A +G L E G
Sbjct: 172 TSALDPIATGKIEELIQELK-KKYTIVIVTHNMQQAARIS-----DRTAFFYDGELVEYG 225
Query: 527 THDEL 531
+++
Sbjct: 226 PTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 59/229 (25%)
Query: 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114
E++N+ Y R VL + SL + G+ V ++G +G+GKST++ + P +G++L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1115 LDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHF 1174
LDG+DL + + L + V Q A + H
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 1175 ISSLPHGYDTHVGMRGVD-LTPGQKQRIAIARVVLKNAPILLLDEASSS--IESESSRVV 1231
R + L+ G++QR+ +AR + + PILLLDE +S I +
Sbjct: 91 A------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ----- 133
Query: 1232 QEALDTL----IMGNKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEG 1273
E L+ L KT +++ H AA R+ D +++L GRIV +G
Sbjct: 134 IELLELLRRLARERGKTVVMVLHDLNLAA--RYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-26
Identities = 96/373 (25%), Positives = 172/373 (46%), Gaps = 49/373 (13%)
Query: 933 NKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPT 992
+KV + + +LK + ++LH + F + + FL+ + +D
Sbjct: 520 DKVEGIRQEELKVLKKSAYLHAVGT-FTWVCTPFLVALIT---FAVYVTVDENNILDAEK 575
Query: 993 ALKEYMVFSFATFAL------VEPFGLAPYILKRRKSLISVFEIIDRVPKIDPD--DSSA 1044
A +F+ F L + A LKR + +S E+ +PD +
Sbjct: 576 AFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL-------EPDSIERRT 628
Query: 1045 VKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER 1104
+KP SI + N F + +R L+ + + G VAVVG G GKS+++S +
Sbjct: 629 IKPGEGN-SITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLA 686
Query: 1105 FYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYAR---HNASEAE 1161
D V G V + G + V Q+ I + ++RENI++ + +
Sbjct: 687 EMDKVEGHVHMKGS-------------VAYVPQQAWIQNDSLRENILFGKALNEKYYQQV 733
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
++ A + + + LP G T +G +GV+L+ GQKQR+++AR V NA I L D+ S
Sbjct: 734 LEACALLPD----LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789
Query: 1222 SIESESSRVVQEALDTLI-----MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHD 1276
++++ V + + +I + NKT IL+ H + + VD I+V++GG+I E G++
Sbjct: 790 AVDAH---VGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQ 846
Query: 1277 SLLAKNGLYVRLM 1289
LL ++G + +
Sbjct: 847 ELLQRDGAFAEFL 859
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 30/242 (12%)
Query: 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSS---IIPLMERFYDPT 364
IE +NV + ++ L L+VP + ++GR+G+GKS+ I +ER PT
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PT 58
Query: 365 LGEVLLDGENIKNL---KLEWLRSQIGLVTQEPALL-SLSIRDNIAYG-RDATLDQIEEA 419
G VL+DG ++ L +L R +IG++ Q LL S ++ +N+A A + + E
Sbjct: 59 SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE 118
Query: 420 AKIAHAHTFI--SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
++ + Y Q L+ QK ++ IARA+ NP +LL DE T L
Sbjct: 119 ERVLELLELVGLEDKADAYPAQ-------LSGGQKQRVGIARALANNPKVLLCDEATSAL 171
Query: 478 DFEAERAVQEALDLLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531
D E +++ L LL LG + ++I + +++ D +AVM++G + E GT +E+
Sbjct: 172 DPETTQSI---LALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Query: 532 LA 533
A
Sbjct: 229 FA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 6e-26
Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 30/233 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++NV + + + SL + G+ V ++G SG GK+T++ +I F P +G++
Sbjct: 6 LEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIY-------ARHNASEAEVKEA 1165
LLDG D+ ++ + +G+V Q +F T+ EN+ + + +A V+EA
Sbjct: 63 LLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
+ F PH L+ GQ+QR+A+AR ++ +LLLDE S++++
Sbjct: 121 LELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 1226 ESSRVVQEALDTLIM-GNKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGT 1274
+ +++ L L T + + H A M D I V+N GRI + GT
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMS--DRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-26
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 47/219 (21%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E +NV Y + +L+ L + A + VAL+G +GSGKS+++ + +P G +
Sbjct: 1 LELKNVSKRY---GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 369 LLDGENI--KNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHA 425
L+DGE++ +L LR +IG+V Q+ AL L++ +NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
L+ Q+ ++++ARA+ ++P +LLLDE T LD R V
Sbjct: 101 ---------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 486 QEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGR 521
+ L L LG + +++ L AD + V+ +G+
Sbjct: 140 RALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 7e-26
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 47/217 (21%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE RN+ Y + L LTV + L+G NG+GK+++I ++ P GE+
Sbjct: 1 IEVRNLSKRY---GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHT 427
+ G++IK E ++ +IG + +EP+L L++R+N+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96
Query: 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487
S G K +L++A+A+L +P +L+LDE T GLD E+ R E
Sbjct: 97 --S---GG---------------MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136
Query: 488 ALDLLMLGRSTIIIA-RRLSLIRN-ADYIAVMDEGRL 522
L L TI+++ L D +A+++ GR+
Sbjct: 137 LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 39/234 (16%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE+KN+ + VL L V G+ V ++G SGSGKST++ I +P +G +
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1114 LLDGRDL--KLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYA---RHNASEAEVKEAAR 1167
++DG L N+ LR +G+V Q+ +F T+ ENI A S+AE +E A
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 1168 -------IAN-AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
+A+ A + + L+ GQ+QR+AIAR + N ++L DE
Sbjct: 118 ELLEKVGLADKADAYPAQ---------------LSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 1220 SSSIESESSRVVQEALDT---LIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRI 1269
+S+++ E +V E LD L T +++ H R V D ++ ++ GRI
Sbjct: 163 TSALDPE---LVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 8e-26
Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 25/228 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E + + +Y + L LTV + +AL+G +G GK++++ L+ P GE+
Sbjct: 1 LELKGLSKTY---GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYG---RDATLDQIEEAAKIAH 424
L+DG ++ + E R IG+V Q+ AL L++ +NIA+G R +I +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
+ L Y + L+ Q+ ++++ARA+ PS+LLLDE LD +
Sbjct: 116 ELVGLEGLLNRYPHE-------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 485 VQEAL-DLLMLGRSTII-----IARRLSLIRNADYIAVMDEGRLFEMG 526
++E L +L T I L+L AD IAVM+EGR+ ++G
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALAL---ADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 70/247 (28%), Positives = 121/247 (48%), Gaps = 37/247 (14%)
Query: 1053 SIELKNVDFCYPSRPEVL-VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
+ ++N+ Y L+N SL++ G+T+ +VG SGSGKST+ L+ P +G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1112 QVLLDGRDL-KLYNLRWLRNHLGLVQQEPIIFST-----TIRENIIY--ARHNASEAEVK 1163
+LLDG+ L + + +V Q+P S+ T+ I+ R + +
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPY--SSLNPRRTVGR-ILSEPLRPHGLSKSQQ 119
Query: 1164 EAARIANAHH----FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
A + + F+ PH +L+ GQ+QRIAIAR ++ +L+LDE
Sbjct: 120 RIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEP 168
Query: 1220 SSSIESESSRVVQ-EALDTLIM----GNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
+S+++ VQ + L+ L+ T + I+H A++ H+ D I V++ G+IVE G
Sbjct: 169 TSALDV----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224
Query: 1274 THDSLLA 1280
+ LL+
Sbjct: 225 PTEELLS 231
|
Length = 252 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 71/242 (29%), Positives = 117/242 (48%), Gaps = 39/242 (16%)
Query: 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+E +N+ S+ + + L ++ + + LVG +GSGKS++ + PT G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 368 VLLDGENIKNLK---LEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAH 424
++ DG+++ L + R +I +V Q+P + SL+ R I +QI E +I
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP-MSSLNPRMTIG-------EQIAEPLRI-- 111
Query: 425 AHTFISSLEKGYETQV-GRAGLALTEE------------QKIKLSIARAVLLNPSILLLD 471
H +S E E + G+ L EE Q+ +++IARA+ LNP +L+ D
Sbjct: 112 -HGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD 170
Query: 472 EVTGGLDFEAERAVQ-EALDLLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524
E T LD +VQ + LDLL LG + + I L ++ AD +AVM G++ E
Sbjct: 171 EPTSALD----VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226
Query: 525 MG 526
G
Sbjct: 227 EG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-25
Identities = 75/256 (29%), Positives = 123/256 (48%), Gaps = 7/256 (2%)
Query: 283 RLYEMISRSSSTTNYDGNTLP----SVHGNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAK 337
R+ I S T N P G+I+F +V+ Y RP +P +L G V
Sbjct: 1205 RVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPS 1262
Query: 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL 397
+ V +VGR G+GKSS++ + R + G +++D ++ L LR + ++ Q P L
Sbjct: 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322
Query: 398 SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457
S ++R NI + + EA + AH I G + +V G + Q+ LS+
Sbjct: 1323 SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382
Query: 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVM 517
ARA+L IL+LDE T +D + +Q + + ++IA RL+ I + D I V+
Sbjct: 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVL 1442
Query: 518 DEGRLFEMGTHDELLA 533
G++ E + ELL+
Sbjct: 1443 SSGQVLEYDSPQELLS 1458
|
Length = 1495 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 26/239 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE +NV Y + + +N +L++ G+ + ++G SGSGK+T + +I R +P +G++
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENII-------YARHNASEAEVKEA 1165
+DG D++ + LR +G V Q+ +F T+ ENI + + E
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-RERADEL 117
Query: 1166 ARIAN--AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
+ F PH +L+ GQ+QR+ +AR + + P+LL+DE ++
Sbjct: 118 LALVGLDPAEFADRYPH-----------ELSGGQQQRVGVARALAADPPLLLMDEPFGAL 166
Query: 1224 ESESSRVVQEALDTLIMG-NKTTILIAHRA-AMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
+ + +QE L KT + + H R D I ++ G IV+ GT D +L
Sbjct: 167 DPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-25
Identities = 62/234 (26%), Positives = 121/234 (51%), Gaps = 26/234 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E RNV S+ + + L + + V L+G +G GK++++ ++ F P+ GE+
Sbjct: 6 LEIRNVSKSF---GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG----RDATLDQIEEAAKIA 423
LLDGE+I ++ E + IG+V Q AL +++ +N+A+G + +I+ + A
Sbjct: 63 LLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
+ Q+ Q+ ++++ARA++ P +LLLDE LD +
Sbjct: 121 LELVGLEGFADRKPHQLSGG-------QQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 484 AVQEAL-DLLM-LGRSTIIIAR----RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+++ L +L LG + + + L++ +D IAVM++GR+ ++GT +E+
Sbjct: 174 QMRKELKELQRELGITFVYVTHDQEEALAM---SDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 29/239 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++N+ YP+ L N +L +N G+ VA++G SG+GKST++ I R +P +G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1114 LLDGRD---LKLYNLRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNA-----------S 1158
LL+G D L+ LR LR +G++ Q +I T+ EN+++ R S
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1159 EAEVKEAARIANAHHFISSLPH-GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLD 1217
E + + A +S+L G R L+ GQ+QR+AIAR + + ++L D
Sbjct: 120 EEDKERA---------LSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 1218 EASSSIESESSRVVQEALDTL-IMGNKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEGT 1274
E +S++ ++S+ V + L + T I+ H+ + ++ D IV L G IV +G
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 5e-25
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 1069 VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW- 1127
++ L + S V G+ ++G +G+GK+T+ +LI F P +G VL DG D+
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDI----TGLP 68
Query: 1128 --LRNHLGLVQ--QEPIIFST-TIRENIIYARHNAS-------EAEVKEAARIANAHHFI 1175
LG+ + Q P +F T+ EN++ A + A +E A +
Sbjct: 69 PHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELL 128
Query: 1176 SS--LPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
L D G +L+ GQ++R+ IAR + + +LLLDE ++ + E + + E
Sbjct: 129 ERVGLADLADRPAG----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184
Query: 1234 ALDTLIMGNKTTILIAHR-AAMMRHVDNIVVLNGGRIVEEGT 1274
+ L T +L+ H +M D + VL+ GR++ EGT
Sbjct: 185 LIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 27/245 (11%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE++++ F Y + L SL + G A++G +G+GKST++ + Y P G+V
Sbjct: 5 IEVEDLHFRYKDGTKAL--KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHN----ASEAE--VKEA 1165
+ GR++ N +W+R+ +GLV Q+P +FS+T+ +++ + N E E V+EA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
+ F P+ H L+ GQK+R+AIA V+ + +++LDE + ++
Sbjct: 123 LKAVRMWDFRDKPPY----H-------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEG-----THDSLL 1279
+ E LD L KT I+ H + D ++VL GR++ EG T + ++
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIV 231
Query: 1280 AKNGL 1284
+ GL
Sbjct: 232 EQAGL 236
|
Length = 274 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 7e-25
Identities = 70/246 (28%), Positives = 114/246 (46%), Gaps = 43/246 (17%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E N+ F Y PIL ++P + ++G NGSGKS+++ + P GEV
Sbjct: 3 LEVENLSFGY---GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEP-ALLSLSIRDNIAYGR-----------DATLDQI 416
LLDG++I +L + L ++ V Q P A L++ + + GR + +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 417 EEAAK---IAH-AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472
EEA + + H A + L G E Q++ IARA+ ILLLDE
Sbjct: 120 EEALELLGLEHLADRPVDELSGG-------------ERQRV--LIARALAQETPILLLDE 164
Query: 473 VTGGLDFEAERAVQEALDLL-----MLGRSTIIIARRLSL-IRNADYIAVMDEGRLFEMG 526
T LD E L+LL G + +++ L+L R AD++ ++ +G++ G
Sbjct: 165 PTSHLDI---AHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221
Query: 527 THDELL 532
T +E+L
Sbjct: 222 TPEEVL 227
|
Length = 258 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 41/245 (16%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF NV Y ++ + LT+ + + L+G +GSGK++ + ++ R +PT GE+
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIA-------YGRDATLDQIEEAA 420
L+DGE+I +L LR +IG V Q+ L L++ +NIA + ++ + +E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 421 KIAH------AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474
+ A + L G + +VG +ARA+ +P ILL+DE
Sbjct: 119 DLVGLDPSEYADRYPHELSGGQQQRVG---------------VARALAADPPILLMDEPF 163
Query: 475 GGLD-FEAERAVQEALDLLMLGRSTII-----IARRLSLIRNADYIAVMDEGRLFEMGTH 528
G LD ++ +E +L TI+ I L L AD IAVMD G + + T
Sbjct: 164 GALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKL---ADRIAVMDAGEIVQYDTP 220
Query: 529 DELLA 533
DE+LA
Sbjct: 221 DEILA 225
|
Length = 309 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-24
Identities = 68/247 (27%), Positives = 114/247 (46%), Gaps = 27/247 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I ++++ F YP L + S V G+ VA+VG +GSGKST+ L+ P AG +
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNAS------EAEVKEA 1165
+ G L + +R +G+V Q P T+++++ + N V +A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
R F++ PH L+ GQKQR+AIA V+ I++LDEA+S ++
Sbjct: 125 LRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 1226 ESSRVVQEALDTL-IM---GNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
+E L+T+ + T + I H D ++V+N G I+EEGT + +
Sbjct: 174 RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230
Query: 1282 NGLYVRL 1288
+ +
Sbjct: 231 GHMLQEI 237
|
Length = 279 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 22/223 (9%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
L +V + L+G NG+GK+++ L+ F PT G VL DGE+I L ++
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIAR 74
Query: 387 IGLV-T-QEPALL-SLSIRDNI-----AYGRDATLDQIEEAAKIAHAHTFISSLEKGYET 438
+G+ T Q P L L++ +N+ A L + LE
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLE----- 129
Query: 439 QVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF-EAERAVQEALDL 491
+VG A LA L+ Q+ +L IARA+ +P +LLLDE GL+ E E + +L
Sbjct: 130 RVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189
Query: 492 LMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
G + +++ + ++ + AD + V+D+GR+ GT DE+
Sbjct: 190 RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 58/198 (29%), Positives = 108/198 (54%), Gaps = 10/198 (5%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF NV +Y L G +++ A + V LVG +G+GKS+++ L+ + PT G +
Sbjct: 1 IEFINVTKTY--PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 369 LLDGENIKNLK---LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAH 424
++G+++ +L+ + +LR +IG+V Q+ LL ++ +N+A+ + T E K
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
A + L + A L+ E+Q++ +IARA++ +P+IL+ DE TG LD +
Sbjct: 119 AALELVGLSHKHRALP--AELSGGEQQRV--AIARAIVNSPTILIADEPTGNLDPDTTWE 174
Query: 485 VQEALDLLMLGRSTIIIA 502
+ L + +T+++A
Sbjct: 175 IMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 17/223 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF+ V SY S + IL + +VG +G+GKS++I L+ R DPT G +
Sbjct: 4 IEFKEV--SYSSFGKE-ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTF 428
L+DG +IK + + LR +IG+V Q+P L +++DNI YG + + K +
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG------PMLKGEKNVDVEYY 114
Query: 429 IS--SLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
+S L K Y T+ L+ E Q++ SIAR + NP +LLLDE T LD + ++
Sbjct: 115 LSIVGLNKEYATR-DVKNLSGGEAQRV--SIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 487 EALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMG 526
E + L + + I I + R DY A +++G L E
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 74/259 (28%), Positives = 120/259 (46%), Gaps = 38/259 (14%)
Query: 298 DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357
+ + + I+ RN+ F Y + L L + + A +G +G GKS+++
Sbjct: 3 MMSMVATAPSKIQVRNLNFYY---GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
Query: 358 ERFYD--PTL---GEVLLDGENI--KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG-- 408
R Y+ P GE+LLDGENI + LR+++G+V Q+P +SI DNIA+G
Sbjct: 60 NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVR 119
Query: 409 ------RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462
R +++E A A +L + ++ ++G +L+ Q+ +L IAR +
Sbjct: 120 LFEKLSRAEMDERVEWALTKA-------ALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172
Query: 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII-------ARRLSLIRNADYIA 515
+ P +LLLDE LD + ++E + L T++I A R S DY A
Sbjct: 173 IRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCS-----DYTA 226
Query: 516 VMDEGRLFEMGTHDELLAT 534
M G L E G D +
Sbjct: 227 FMYLGELIEFGNTDTIFTK 245
|
Length = 260 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-24
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 26/236 (11%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
SI + NV + + L + SL + G+ VA++G SG+GKST++ +I P AG+
Sbjct: 2 SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 1113 VLLDGRDLK-LYNLRWLRNHLGLVQQEPIIF-STTIRENIIYA----RHNASEAE----V 1162
+ L+GR L + NL +G V Q +F T+ +NI + + SEAE V
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
+E R+ P L+ GQ+QR+A+AR + +LLLDE +
Sbjct: 119 EELLRLVQLEGLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGA 167
Query: 1223 IESESSRVVQEALDTLIMGNK-TTILIAHRAA-MMRHVDNIVVLNGGRIVEEGTHD 1276
++++ + ++ L L TT+ + H + D +VVLN GRI + G D
Sbjct: 168 LDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD 223
|
Length = 345 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 45/241 (18%)
Query: 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKS---SIIPLMERFYDPT 364
IE +NV Y E + L L + A + VA+VG +GSGKS +++ +++ PT
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 365 LGEVLLDGENIKNL---KLEWLR-SQIGLVTQEPALL-SLSIRDNIAYG----------R 409
GEVL++G+++ L +L LR +IG V Q LL L++ +N+ R
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 410 DATLDQIEEAAKIAH--AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467
+++ E + S L G Q+ +++IARA++ NP I
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGG---------------QQQRVAIARALINNPKI 163
Query: 468 LLLDEVTGGLDFEAERAVQEAL-DLLMLGRSTIIIA---RRLSLIRNADYIAVMDEGRLF 523
+L DE TG LD + + V E L +L TII+ L+ AD + + +G++
Sbjct: 164 ILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY--ADRVIELKDGKIE 221
Query: 524 E 524
E
Sbjct: 222 E 222
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 46/239 (19%)
Query: 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKS---SIIPLMERFYDPT 364
IE +N+ +Y E + L G L++ + VA+VG +GSGKS +I+ ++R PT
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 365 LGEVLLDGENIKNLKLEWL----RSQIGLVTQEPALLS-LSIRDNIAYG-------RDAT 412
GEV +DG +I L + L R IG V Q LL L+ +N+ +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 413 LDQIEEAAKI----AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468
++ EE + + + S L G ++Q++ +IARA+ +P I+
Sbjct: 118 RERAEELLERVGLGDRLNHYPSELSGG-------------QQQRV--AIARALANDPKII 162
Query: 469 LLDEVTGGLDFEAERAVQEALDLLM-----LGRSTIIIARRLSLIRNADYIAVMDEGRL 522
L DE TG LD E + V ++LL G + +++ L AD I + +G++
Sbjct: 163 LADEPTGNLDSETGKEV---MELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++ V + VL + +L V G+ VA++G SG GKST++ LI P +G+V
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANA- 1171
LLDGR + +G V QE + T+ +N+ +++ + R
Sbjct: 61 LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 1172 -----HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
F PH L+ G +QR+AIAR + +LLLDE ++++
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1227 SSRVVQ-EALDTLIMGNKTTILIAH---RAAMMRHVDNIVVLNG--GRIVEE 1272
+ +Q E L KT +L+ H A + D +VVL+ GRI EE
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYL--ADRVVVLSNRPGRIGEE 214
|
Length = 248 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-23
Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 1037 IDPDDSSAVKPPNVY-GSIELKNVDFCY----PSRPEVLVLSNFSLKVNGGQTVAVVGVS 1091
I+P ++ P V GS+ + V Y P LVL S ++ + V +VG +
Sbjct: 1291 IEPASPTSAAPHPVQAGSLVFEGVQMRYREGLP-----LVLRGVSFRIAPREKVGIVGRT 1345
Query: 1092 GSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENII 1151
GSGKST++ R + G++ ++GR++ Y LR LR ++ Q+P++F T+R+N +
Sbjct: 1346 GSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN-V 1404
Query: 1152 YARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK-N 1210
AS AEV A + ++S G D+ V G + + GQ+Q + +AR +LK
Sbjct: 1405 DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464
Query: 1211 APILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIV 1270
+ +L+DEA+++I+ R +Q + + T I IAHR + D I+V++ G +
Sbjct: 1465 SGFILMDEATANIDPALDRQIQATVMS-AFSAYTVITIAHRLHTVAQYDKIIVMDHGAVA 1523
Query: 1271 EEGT 1274
E G+
Sbjct: 1524 EMGS 1527
|
Length = 1560 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-23
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 52/240 (21%)
Query: 1069 VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN---L 1125
V+ +++ SL V G+ ++G+SGSGKST++ L+ R +P G++L+DG+D+ + L
Sbjct: 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAEL 100
Query: 1126 RWLRNH-LGLV-QQEPIIFSTTIRENIIYARH--NASEAEVKEAAR----IANAHHFISS 1177
R LR + +V Q ++ T+ EN+ + +AE +E A + +
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK 160
Query: 1178 LPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDT 1237
P+ +L+ G +QR+ +AR + + ILL+DEA S ALD
Sbjct: 161 YPN-----------ELSGGMQQRVGLARALANDPDILLMDEAFS------------ALDP 197
Query: 1238 LIMG-------------NKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
LI KT + I H A +R D I ++ G IV+ GT + +L
Sbjct: 198 LIRTEMQDELLELQAKLKKTIVFITHDLDEA--LRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 4e-23
Identities = 59/230 (25%), Positives = 109/230 (47%), Gaps = 31/230 (13%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE++N+ Y +RP VL + SL V G+ A++G +G+GKST++ I P +G++
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1114 LLDGRDLKLYNLRWLRNHLGLV-QQEPIIFS--TTIRE----------NIIYARHNASEA 1160
+ G+ ++ + LR +G V Q+ + S T+++ + +
Sbjct: 62 KIFGKPVR-KRRKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 1161 EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
+V EA D +G +L+ GQKQR+ +AR + +N +LLLDE
Sbjct: 119 KVDEALERVGMEDLR-------DRQIG----ELSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 1221 SSIESESSRVVQEALDTLIMGNKTTILIAHR-AAMMRHVDNIVVLNGGRI 1269
+ ++ + + + L L KT +++ H +M + D ++ LN I
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 79/247 (31%), Positives = 126/247 (51%), Gaps = 50/247 (20%)
Query: 1054 IELKNVDFCYP-SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
IELKN+ +P + L+N SL + G+ V+G SG+GKST+I I P +G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1113 VLLDGRDL-KLYN--LRWLRNHLGLVQQEPIIF----STTIRENIIYARH--NASEAEVK 1163
VL+DG+DL L LR R +G++ Q F S T+ +N+ +AE+K
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQH---FNLLSSRTVFDNVALPLELAGTPKAEIK 118
Query: 1164 EAARIA----------NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP- 1212
AR+ A + + L+ GQKQR+AIAR L + P
Sbjct: 119 --ARVTELLELVGLSDKADRYPAQ---------------LSGGQKQRVAIAR-ALASNPK 160
Query: 1213 ILLLDEASSSIESESSRVVQEALDTLIMGNK----TTILIAHRAAMMRHV-DNIVVLNGG 1267
+LL DEA+S+++ ++R + L+ L N+ T +LI H +++ + D + V++ G
Sbjct: 161 VLLCDEATSALDPATTRSI---LELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217
Query: 1268 RIVEEGT 1274
R+VE+GT
Sbjct: 218 RLVEQGT 224
|
Length = 343 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-23
Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 15/232 (6%)
Query: 1053 SIELKNVDFCY-PSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA 1110
SI+++N+ Y P E L N ++++ G+ V ++G +GSGKST+I + P +
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 1111 GQVLLDGRDL--KLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHN--ASEAEVKE 1164
G++++DG D+ K L +R +GLV Q P +F TI ++I + N SE E++
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIEN 121
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
+ A I L Y+ + +L+ GQK+R+AIA VV IL+LDE ++ ++
Sbjct: 122 RVKRAMN---IVGLD--YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
Query: 1225 SESSRVVQEALDTLIMGNK-TTILIAHRAA-MMRHVDNIVVLNGGRIVEEGT 1274
+ + + L T IL++H + + D I+V+N G+ +GT
Sbjct: 177 PKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 5e-23
Identities = 48/225 (21%), Positives = 104/225 (46%), Gaps = 14/225 (6%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++++N+ Y + + SL V G+ ++G +G+GK+T + ++ P +G
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENI-IYAR-HNASEAEVKEAARIAN 1170
++G + + + R LG Q +F T+RE++ YAR ++E+KE
Sbjct: 60 YINGYSI-RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKE---EVE 115
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
+ L + L+ G K+++++A ++ +LLLDE +S ++ S R
Sbjct: 116 LLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRA 171
Query: 1231 VQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
+ + + + ++ IL H + D I +++ G++ G+
Sbjct: 172 IWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 6e-23
Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 21/230 (9%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I KNV F Y S L + S + GQ ++VG +GSGKSTI L+ +G++
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNAS------EAEVKEA 1165
+ + + N LR H+G+V Q P + ++ ++ + N + V EA
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
+ + P+ L+ GQKQR+AIA V+ N +++LDEA+S ++
Sbjct: 127 LKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 1226 ESSRVVQEALDTLIMGNKTTIL-IAHRAAMMRHVDNIVVLNGGRIVEEGT 1274
++ + + + + + + TI+ I H + D+++V+N G + +EGT
Sbjct: 176 DARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGT 225
|
Length = 269 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 7e-23
Identities = 73/255 (28%), Positives = 127/255 (49%), Gaps = 42/255 (16%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE++ V + R +L L V G+ +A++G SGSGKST++ LI P G++
Sbjct: 9 IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1114 LLDGRDL-KLYNLRW--LRNHLGLVQQEPIIFST-TIRENI---IYARHNASEAEVKEAA 1166
L+DG D+ +L +R +G++ Q+ +FS+ T+ EN+ + E+ ++E
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 1167 RIA-NAHHFISSLPHGYDTHVGMRGV--DLTP-----GQKQRIAIARVVLKNAPILLLDE 1218
+ VG+RG DL P G ++R+A+AR + + +L LDE
Sbjct: 126 LMKLEL--------------VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDE 171
Query: 1219 ASSSIESESSRVVQEALDTLIM-----GNKTTILIAHR-AAMMRHVDNIVVLNGGRIVEE 1272
+S ++ S+ V +D LI T I++ H +++ D + VL G+++ E
Sbjct: 172 PTSGLDPISAGV----IDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227
Query: 1273 GTHDSLLAKNGLYVR 1287
GT + LLA + +VR
Sbjct: 228 GTPEELLASDDPWVR 242
|
Length = 263 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 97.5 bits (244), Expect = 1e-22
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 23/178 (12%)
Query: 309 IEFRNVYFSY-LSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+E RNV +Y + L L+V + VALVG +G GKS+++ ++ PT GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAH 426
VL+DGE + G V Q+ ALL L++ DN+A G + EA + A
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 427 TFISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
LE VG +G L+ + ++++ARA+ ++P +LLLDE LD
Sbjct: 116 -----LEL-----VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALD 163
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-22
Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 42/255 (16%)
Query: 1054 IELKN--VDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKST----IISLIERFYD 1107
+E++N V+F V + + S +V G+ + +VG SGSGKST ++ L+
Sbjct: 6 LEVENLTVEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1108 PVAGQVLLDGRDLKLYNLRWLR----NHLGLVQQEPIIFS-----TTIRENI---IYARH 1155
+G+V+LDGRDL + R +R + ++ Q+P + TI + I +
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP--MTSLNPVMTIGDQIREALRLHG 122
Query: 1156 NASEAEVKEAA-------RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208
S AE ++ A + + PH L+ G +QR+ IA +
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPER-RDRYPH-----------QLSGGMRQRVMIAMALA 170
Query: 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTT-ILIAHRAAMMRHV-DNIVVLNG 1266
+L+ DE +++++ + + + L L + I H ++ + D +VV+
Sbjct: 171 LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK 230
Query: 1267 GRIVEEGTHDSLLAK 1281
G IVE G + +L+
Sbjct: 231 GEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE NV YP L ++ ++ G+ V +VG SG+GKST++ LI + P +G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1114 LLDGRDLKLYNLR---WLRNHLGLVQQEPIIFST-TIREN------IIYARHNASEAEVK 1163
++G+D+ R +LR +G+V Q+ + + EN + V
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
A + H +LP L+ G++QR+AIAR ++ + IL+ DE + ++
Sbjct: 119 AALELVGLSHKHRALPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 1224 ESESSRVVQEALDTLIMGNK--TTILIAHRAAMM--RHVDNIVVLNGGRI 1269
+ +++ + L + NK TT+++A A + ++ L G++
Sbjct: 168 DPDTTWEIMNLLKKI---NKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-22
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 40/238 (16%)
Query: 1069 VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDL--- 1120
V + S ++ G+ + +VG SGSGKS + I V G++L DG+DL
Sbjct: 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77
Query: 1121 ---KLYNLRWLRNHLGLVQQEPI-----IFS--TTIRENIIYARHNASEAEVKEAA---- 1166
+L +R + ++ Q+P+ + + I E + S+ E KE A
Sbjct: 78 SEKELRKIRG--KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 1167 ---RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
I + + S PH +L+ G +QR+ IA + N +L+ DE ++++
Sbjct: 136 ELVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1224 ESESSRVVQEALDTLIMGNKTT-ILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLL 1279
+ + + L L T ILI H ++ + D + V+ GRIVEEG + +
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 1e-22
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 19/221 (8%)
Query: 1069 VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR-W 1127
+ +++ SL+V G+ V ++G +G+GK+T+ +LI FY P +G V+ GRD+ L
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPH 74
Query: 1128 LRNHLGLVQ--QEPIIFST-TIRENIIYARHN---------ASEAEVKEAARIANAHHFI 1175
LG+ + Q +F T+ EN+ H A +E A +
Sbjct: 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELL 134
Query: 1176 SSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL 1235
+ G +L+ GQ++R+ IAR + +LLLDE ++ + E + + E +
Sbjct: 135 EFV--GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 1236 DTLIMGNKTTIL-IAHR-AAMMRHVDNIVVLNGGRIVEEGT 1274
L TIL I H +M D IVVLN G ++ EGT
Sbjct: 193 RELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 30/236 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I +NV YP E L + S + G+ V + G SG+GKST++ LI P G++
Sbjct: 2 IRFENVSKAYPGGREAL--RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1114 LLDGRD---LKLYNLRWLRNHLGLVQQE-PIIFSTTIRENIIYA------RHNASEAEVK 1163
L++G D LK + +LR +G+V Q+ ++ T+ EN+ V
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
E + H +LP L+ G++QR+AIAR ++ +LL DE + ++
Sbjct: 120 EVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 1224 ESESSRVVQEALDTLIMGNK--TTILIA-HRAAMMRHVDN-IVVLNGGRIVEEGTH 1275
+ + S E + N+ TT+L+A H ++ + + ++ L GR+V + +
Sbjct: 169 DPDLSW---EIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 64/221 (28%), Positives = 107/221 (48%), Gaps = 24/221 (10%)
Query: 1074 NFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN---LRWLRN 1130
+ SL V G+ ++G+SGSGKST++ I R +P +G+VL+DG+D+ + LR LR
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 1131 H-LGLVQQEPIIF-STTIRENIIYA------RHNASEAEVKEAARIANAHHFISSLPHGY 1182
+ +V Q + T+ EN+ + E EA + + P
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD-- 159
Query: 1183 DTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI-MG 1241
+L+ G +QR+ +AR + + ILL+DEA S+++ R +Q+ L L
Sbjct: 160 ---------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210
Query: 1242 NKTTILIAHR-AAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
KT + I H +R D I ++ GR+V+ GT + +L
Sbjct: 211 QKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 33/238 (13%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E +NV S+ +L L + + V L+G +G GKS+++ ++ +PT GE+
Sbjct: 4 LELKNVRKSF---GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYG-------RDATLDQIEEAA 420
L+DG ++ +L E + I +V Q AL +++ +NIA+G + +++E A
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
K+ ++ R L L+ Q+ ++++ARA++ P + LLDE LD +
Sbjct: 119 KLLGLEHLLN-----------RKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 481 AER-AVQEALDLLMLGRSTIIIARR-----LSLIRNADYIAVMDEGRLFEMGTHDELL 532
E L +T I ++L AD I VM++GR+ ++GT EL
Sbjct: 168 LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTL---ADRIVVMNDGRIQQVGTPLELY 222
|
Length = 338 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-22
Identities = 73/250 (29%), Positives = 129/250 (51%), Gaps = 17/250 (6%)
Query: 1044 AVKPPNVYG--SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISL 1101
A PP G +I +KN F + S+ LS+ +L++ G VA+VG +G GK+++IS
Sbjct: 603 AQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISA 662
Query: 1102 IERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAE 1161
+ ++ +R + V Q IF+ T+RENI++ SE
Sbjct: 663 MLGELSHAETSSVV------------IRGSVAYVPQVSWIFNATVRENILFGSDFESERY 710
Query: 1162 VKEAARIANAHHFISSLPHGYD-THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
+ A + H + LP G D T +G RGV+++ GQKQR+++AR V N+ I + D+
Sbjct: 711 WR-AIDVTALQHDLDLLP-GRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768
Query: 1221 SSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
S++++ + V ++ + KT +L+ ++ + +D I++++ G I EEGT L
Sbjct: 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828
Query: 1281 KNGLYVRLMQ 1290
L+ +LM+
Sbjct: 829 SGSLFKKLME 838
|
Length = 1495 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 26/236 (11%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV---- 1109
IE++N++ Y E L N +L + Q A++G SG GKST++ + R D V
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1110 -AGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA-----RHNASEAE 1161
G+VL DG+D+ K ++ LR +G+V Q+P F +I +NI Y + E +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 1162 --VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
V+E+ + A +L + + L+ GQ+QR+ IAR + +LLLDE
Sbjct: 119 EIVEESLKKA-------ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171
Query: 1220 SSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
+S+++ ++ ++E + L T +++ H + D G +VE G
Sbjct: 172 TSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 3e-22
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 34/212 (16%)
Query: 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL---KLEWLRSQ-IGLVTQEPALL 397
++G +GSGKS+++ + R +PT G+VL+DG++I + +L LR + I +V Q ALL
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 398 -SLSIRDNIAYG-----------RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
++ +N+A+G + + +E H + L G + +VG
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVG---- 170
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIAR 503
+ARA+ ++P ILL+DE LD R +Q+ L L L ++ + I
Sbjct: 171 -----------LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 504 RLS-LIRNADYIAVMDEGRLFEMGTHDELLAT 534
L +R D IA+M +GRL ++GT +E+L
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 96.3 bits (241), Expect = 3e-22
Identities = 69/237 (29%), Positives = 113/237 (47%), Gaps = 26/237 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++N++ Y + +L SL V G+ VA++G +G+GK+T++ I P +G +
Sbjct: 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57
Query: 1114 LLDGRDLKLYNLR-WLRNHLGL--VQQEPIIFST-TIRENIIYARHNASEAEVKEAARIA 1169
DGRD+ L R G+ V + IF T+ EN++ + A+ K AR+
Sbjct: 58 RFDGRDIT--GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRK--ARLE 113
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
+ L G L+ G++Q +AIAR ++ +LLLDE S + + +
Sbjct: 114 RVYELFPRLKERRKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APK 166
Query: 1230 VVQEALDTLIMGNK--TTILI----AHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
+V+E + + TIL+ A A + D VL GR+V EGT LLA
Sbjct: 167 IVEEIFEAIRELRDEGVTILLVEQNARFA--LEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-22
Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 28/223 (12%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL------KLYNL 1125
+++ L + G+ ++G+SGSGKST + ++ R +P AGQ+ +DG ++ +L +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 1126 RWLRNHLGLVQQEPIIFS-TTIRENIIY----ARHNASEAEVK--EAARIANAHHFISSL 1178
R R +G+V Q+ +F TI +N E + K E ++ +
Sbjct: 69 R--RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY 126
Query: 1179 PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTL 1238
P +L+ G +QR+ +AR + ILL+DEA S+++ +Q+ L L
Sbjct: 127 PD-----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175
Query: 1239 IMG-NKTTILIAHRA-AMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
KT + I H +R D IV++ G IV+ GT D +L
Sbjct: 176 QATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 4e-22
Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 47/250 (18%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP----- 1108
IE+++++ Y + L + +L + + A++G SG GKST++ + R D
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 1109 VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA--RHNASEAEVKE 1164
V G+VLLDG+++ ++ LR +G+V Q+P F +I +N+ Y H + E+ E
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 1165 AARIANAHHFISSL---------PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILL 1215
SSL + L+ GQ+QR+ IAR + +LL
Sbjct: 125 IVE--------SSLKKAALWDEVKDRLHKS----ALGLSGGQQQRLCIARALAVKPEVLL 172
Query: 1216 LDEASSSIESESSRVVQEALDTLIMGNKTTILI-------AHRAAMMRHVDNIVVLNGGR 1268
+DE +S+++ S+ ++E + L K TI+I A R + D G
Sbjct: 173 MDEPTSALDPISTLKIEELITEL--KKKYTIVIVTHNMQQAARVS-----DYTAFFYLGE 225
Query: 1269 IVEEGTHDSL 1278
+VE G D +
Sbjct: 226 LVEFGPTDKI 235
|
Length = 253 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 4e-22
Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 16/230 (6%)
Query: 1054 IELKNVD-FCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
I+L N+ + + L+N SL V GQ V+G SG+GKST+I + P +G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 1113 VLLDGRDL-KLYN--LRWLRNHLGLV-QQEPIIFSTTIRENIIYARH--NASEAEVKEAA 1166
V++DG+DL L N L R +G++ Q ++ S T+ N+ N + E+K
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIK--- 118
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
R + L +D++ +L+ GQKQR+AIAR + N +LL DEA+S+++
Sbjct: 119 RKVTELLALVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 1227 SSRVVQEALDTLIMG-NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
+++ + E L + T +LI H +++ + D + V++ G ++E+GT
Sbjct: 175 TTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 4e-22
Identities = 70/242 (28%), Positives = 119/242 (49%), Gaps = 43/242 (17%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE NV Y + +S L + + L+G +G GK++++ L+ F PT GE+
Sbjct: 1 IELENVSKFYGGFVALDGVS---LDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG-------RDATLDQIEEAA 420
LLDG++I NL + + V Q AL L++ +NIA+G + +++ EA
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 421 KI----AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
+ +A+ S L G Q+ +++IARA++ P +LLLDE G
Sbjct: 116 DLVQLEGYANRKPSQLSGG---------------QQQRVAIARALVNEPKVLLLDEPLGA 160
Query: 477 LDFEAERAVQEALDLL--MLGRSTIII-----ARRLSLIRNADYIAVMDEGRLFEMGTHD 529
LD + + +Q L L LG T + L++ +D IAVM++G++ ++GT +
Sbjct: 161 LDLKLRKDMQLELKRLQKELG-ITFVFVTHDQEEALTM---SDRIAVMNKGKIQQIGTPE 216
Query: 530 EL 531
E+
Sbjct: 217 EI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 5e-22
Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 27/239 (11%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ L +V F Y P F L V G+ VA++G SG+GKST+++LI F P +G++
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARH-----NASEAE-VKEAA 1166
L++G D + ++ QE +F+ T+ +NI NA + E V+ AA
Sbjct: 57 LINGVDHTA--SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
F+ LP +L+ GQ+QR+A+AR +++ PILLLDE S+++
Sbjct: 115 AQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
Query: 1227 SSRVVQEALDTLIMGNKTTILI-AHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAKNG 1283
+ + L K T+L+ H + D +V L+ GRI +G+ LL+
Sbjct: 164 LRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222
|
Length = 231 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 6e-22
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 26/222 (11%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
L N SL+V G ++G +GSGKS ++ I F P +G++LL+G+D+ NL +
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 1131 HLGLVQQEPIIF-STTIRENIIYA-RHNAS-----EAEVKEAARIANAHHFISSLPHGYD 1183
+ V Q +F T+ +NI Y + E +V E A + H ++ P
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE--- 128
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK 1243
L+ G++QR+AIAR ++ N ILLLDE S+++ + ++E L +
Sbjct: 129 --------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180
Query: 1244 TTIL-IAH---RAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
T+L + H A + D + ++ G++++ G + + K
Sbjct: 181 VTVLHVTHDFEEAWAL--ADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 8e-22
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 25/203 (12%)
Query: 1063 YPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL 1122
YP PEVL NF G+ +A++G +G+GKST++ + P +G VL+DG L
Sbjct: 1 YPGGPEVLKGLNF--AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD- 57
Query: 1123 YN---LRWLRNHLGLVQQEP--IIFSTTIRENIIYARHN--ASEAE----VKEAARIANA 1171
Y+ L R +GLV Q+P +F+ + +++ + N SEAE V+EA A
Sbjct: 58 YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
H L+ G+K+R+AIA V +LLLDE ++ ++ +
Sbjct: 118 SGLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 1232 QEALDTLIMGNKTTILIAHRAAM 1254
L L T ++ H +
Sbjct: 167 LAILRRLRAEGMTVVISTHDVDL 189
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 1e-21
Identities = 71/237 (29%), Positives = 113/237 (47%), Gaps = 30/237 (12%)
Query: 1054 IELKNVDFCYPSRPE---VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA 1110
I+ KNV + Y S E L L + +L+V G+ + ++G +GSGKSTI + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1111 GQVLLDGRDLKLYNLRW-LRNHLGLVQQEP--IIFSTTIRENIIYARHN----ASE--AE 1161
G+V +DG D W +RN G+V Q P I +T + E++ + N E
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
V E+ + + + PH L+ GQKQR+AIA ++ ++ DE ++
Sbjct: 125 VDESLKKVGMYEYRRHAPHL-----------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 1222 SIESESSRVVQEALDTLIMGNK----TTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274
++ R E ++T+ NK T ILI H D I+V++ G++V EGT
Sbjct: 174 MLDPSGRR---EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 1e-21
Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 20/238 (8%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E+ ++ Y S+ V + + S + G+ ++G +G+GK+T++ +I P +G+V
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQE-PIIFSTTIRENIIY--ARHNASEAEVKEAARIAN 1170
+DG D +R +G++ E + T REN+ Y + S E+K ARIA
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK--ARIAE 116
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
L ++ R + + G KQ++AIAR ++ + IL+LDE +S ++ + R
Sbjct: 117 ---LSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK 171
Query: 1231 VQEALDTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRIVEEGTHDSLLAKNGL 1284
+ + L + I +H +M+ V D ++VL+ G +V EG+ ++L A+ L
Sbjct: 172 FHDFIKQLKNEGRAVIFSSH---IMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVL 226
|
Length = 245 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-21
Identities = 71/235 (30%), Positives = 116/235 (49%), Gaps = 15/235 (6%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
++E+ + F Y +R L + S V G+ VA++G +G+GKST+ SL+ R Y GQ
Sbjct: 1 ALEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPII-FSTTIRENIIY--ARHNASEAEVKEAARIA 1169
+ + G DL+ L LG+V Q+P + ++R+N+ Y A H S AE ARIA
Sbjct: 58 ISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEA--RARIA 114
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
++ L +R +L G ++R+ IAR +L +LLLDE + ++ S
Sbjct: 115 EL---LARLGLAERADDKVR--ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRA 169
Query: 1230 VVQEALDTLIMGNKTTILIA-HRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNG 1283
+ + L ++L A H + D +VVL+ GR++ +G L G
Sbjct: 170 AITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATG 224
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 1e-21
Identities = 53/227 (23%), Positives = 107/227 (47%), Gaps = 33/227 (14%)
Query: 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114
E++++ Y P VL + S +V G+ +A+VG +G+GKST++ I P +G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 1115 LDGRDLKLYNLRWLRNHLGLVQQEPII---FSTTIRENI---IYARHNASE-AEVKEAAR 1167
+ G+ L+ R +G V Q I F ++R+ + +Y + A+
Sbjct: 58 VFGKPLEK-----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 1168 IANAHHFISSLPHGYDTHVGMRGV------DLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
+ A VG+ + +L+ GQ+QR+ +AR ++++ +LLLDE +
Sbjct: 113 VDEALER-----------VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161
Query: 1222 SIESESSRVVQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVVLNGG 1267
++ ++ + E L L T +++ H ++ + D +++LN
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 2e-21
Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 52/250 (20%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI---IPLMERFYDPTL 365
IE +N+ S+ + +L G L+V + V ++G +GSGKS++ + +E P
Sbjct: 3 IEIKNLSKSF---GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDS 56
Query: 366 GEVLLDGENIKNLK-LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQI------- 416
G + +DGE++ + K + LR ++G+V Q+ L L++ +N+ TL +
Sbjct: 57 GSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV------TLAPVKVKKLSK 110
Query: 417 EEAAKIA-----------HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465
EA + A A + + L G Q+ +++IARA+ ++P
Sbjct: 111 AEAREKALELLEKVGLADKADAYPAQLSGG---------------QQQRVAIARALAMDP 155
Query: 466 SILLLDEVTGGLDFEAERAVQEAL-DLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523
++L DE T LD E V + + DL G + II+ + R AD + MD+G++
Sbjct: 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII 215
Query: 524 EMGTHDELLA 533
E G +E
Sbjct: 216 EEGPPEEFFD 225
|
Length = 240 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-21
Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 15/221 (6%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
++ L V + V L+G NG+GK+++ L+ FY P+ G V+ G +I L ++
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIAR 78
Query: 387 IGLVT--QEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYET--QVG 441
+G+ Q L L++ +N+A G A L + + E+ E VG
Sbjct: 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVG 138
Query: 442 RAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--M 493
LA L+ Q+ +L IARA+ P +LLLDE GL+ E + E + L
Sbjct: 139 LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR 198
Query: 494 LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
G + ++I + L+ AD I V++ G + GT +E+
Sbjct: 199 GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 3e-21
Identities = 60/215 (27%), Positives = 104/215 (48%), Gaps = 42/215 (19%)
Query: 1064 PSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLI--ERFYDPVAGQVLLDGRDLK 1121
PS+ +L N S K G+ A++G SG+GKST+++ + R V+G+VL++GR L
Sbjct: 17 PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76
Query: 1122 LYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFISSLPH 1180
R R +G V Q+ I+ T T+RE +++A
Sbjct: 77 K---RSFRKIIGYVPQDDILHPTLTVRETLMFAAK------------------------- 108
Query: 1181 GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM 1240
+RG L+ G+++R++IA ++ N +L LDE +S ++S S+ V L L
Sbjct: 109 -------LRG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD 159
Query: 1241 GNKTTILIAH--RAAMMRHVDNIVVLNGGRIVEEG 1273
+T I H + + D +++L+ GR++ G
Sbjct: 160 TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 3e-21
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 37/236 (15%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+EL+ + + + V+SN L +N G+ + ++G SG GK+T++ LI F P +G++
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYA--RHNASEAE----VKEAA 1166
+LDG+D+ ++ H+ V Q +F T+ EN+ + AE V EA
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
R+ F PH L+ GQ+QR+AIAR V+ +LLLDE+ S+++ +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 1227 SSRVVQEALDTL-----IMGNKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGT 1274
+ +Q L L I T + + H A M D IVV+ GRI ++GT
Sbjct: 179 LRKQMQNELKALQRKLGI----TFVFVTHDQEEALTMS--DRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 3e-21
Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 15/239 (6%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE R++ +SY L+ P +A++G NG+GKS++ PT G V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGR-DATLDQIEEAAKIAHA 425
L+ GE I + +R +GLV Q P + S ++ +IA+G + LD EE A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD--EETV----A 115
Query: 426 HTFISSLEK-GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
H S+L G E R L+ +K +++IA + + P +L+LDE T GLD + +
Sbjct: 116 HRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175
Query: 485 VQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLYAE 540
+ + L+ L G + I +L L+ ADYI VMD+GR+ GT +E+ DL A
Sbjct: 176 LIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
|
Length = 277 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 4e-21
Identities = 61/236 (25%), Positives = 110/236 (46%), Gaps = 39/236 (16%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+EL+NV V L + +L + G+ V ++G SG GK+T + +I +P +G++
Sbjct: 1 VELENV---TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIF-STTIRENIIYA--RHNASEAE----VKEAA 1166
+ GRD+ +L + +V Q ++ T+ +NI + + E V+E A
Sbjct: 58 YIGGRDVT--DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE-- 1224
+ H + P L+ GQ+QR+A+ R +++ + L+DE S+++
Sbjct: 116 ELLQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 1225 ------SESSRVVQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVVLNGGRIVEEG 1273
+E R +Q+ L T TTI + H + M D I V+N G+I + G
Sbjct: 165 LRVQMRAELKR-LQQRLGT------TTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 4e-21
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 1096 STIISLIERFYDPVAGQVLLDGRDL-KLYNLRWLRNHLGLVQQEPIIF-STTIRENIIYA 1153
ST++ LI P +G +LLDG D L + + LR +G+V Q+P +F T+REN+ +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1154 RHN-ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP 1212
+ ++A +EA F+ P VG L+ GQKQR+AIAR +LK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP------VGT----LSGGQKQRVAIARALLKKPK 110
Query: 1213 ILLLDEASS 1221
+LLLDE ++
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 5e-21
Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 36/243 (14%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY------- 1123
VL SL+ N G ++++G SGSGKST + I P AG + ++G +++L
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 1124 ------NLRWLRNHLGLVQQEPIIFS-TTIRENIIYA-RH--NASEAEVKEAARIANAHH 1173
L+ LR LG+V Q ++S T+ EN+I A H S+AE E A A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
I+ Y H L+ GQ+QR+AIAR + ++L DE +S+++ E +V E
Sbjct: 141 GIAEKADAYPAH-------LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVGE 190
Query: 1234 ALDTLIMGN-----KTTILIAHRAAMMRHVDNIVV-LNGGRIVEEGTHDSLLAKNGLYVR 1287
L +M + +T +++ H R V + V+ L+ G+I EEG + + N R
Sbjct: 191 VLK--VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF-GNPQSPR 247
Query: 1288 LMQ 1290
L Q
Sbjct: 248 LKQ 250
|
Length = 256 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 6e-21
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 51/224 (22%)
Query: 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369
E N+ Y R +L L++ A + V ++G NG+GKS+++ + P+ GE+L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 370 LDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAH-AHTF 428
LDG+++ +L + L +I V Q AL E +AH A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ--AL---------------------ELLGLAHLADRP 94
Query: 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488
+ L G E Q++ +ARA+ P ILLLDE T LD E
Sbjct: 95 FNELSGG-------------ERQRV--LLARALAQEPPILLLDEPTSHLDI---AHQIEL 136
Query: 489 LDLLM-----LGRSTIIIARRLSL-IRNADYIAVMDEGRLFEMG 526
L+LL G++ +++ L+L R AD + ++ +GR+ G
Sbjct: 137 LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 6e-21
Identities = 75/242 (30%), Positives = 119/242 (49%), Gaps = 19/242 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I F+NV F Y S L +P + ++VG NGSGKS+I LM GE+
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGRDATLDQIEEAAKI-AHA 425
+ + I + E LR IG+V Q P + ++ ++A+G + +E + + A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 426 HTFISSLEKG-YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
+ LE+ YE AL+ QK +++IA + LNPS+++LDE T LD +A
Sbjct: 127 LKQVDMLERADYEPN------ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR-- 178
Query: 485 VQEALDLLMLGRS----TII-IARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYA 539
Q LDL+ +S TII I LS AD++ VM++G +++ GT E+ +
Sbjct: 179 -QNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEELT 237
Query: 540 EL 541
+
Sbjct: 238 RI 239
|
Length = 269 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 6e-21
Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 15/228 (6%)
Query: 1055 ELKNVDFCYPS-RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA--- 1110
+V + +L++ SL V GQ +A++G SGSGK+T++ I +
Sbjct: 5 PWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTS 64
Query: 1111 GQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIAN 1170
GQ+L +G+ K ++ + + Q + ++ T+RE + Y + +A R
Sbjct: 65 GQILFNGQPRKPD--QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKR 122
Query: 1171 AHHFISSLPHGYDTHVG---MRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESES 1227
L T +G ++G ++ G+++R++IA +L + +L+LDE +S ++S +
Sbjct: 123 VE--DVLLRDLALTRIGGNLVKG--ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178
Query: 1228 SRVVQEALDTLIMGNKTTILIAH--RAAMMRHVDNIVVLNGGRIVEEG 1273
+ + L L N+ IL H R+ + R D I++L+ G IV G
Sbjct: 179 ALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 7e-21
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 40/241 (16%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
++ RN+ +Y + P + L V + L+G NG+GK++ + ++ PT G
Sbjct: 1 LQIRNLTKTY-KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIA-YGR---------DATLDQIE 417
++G +I+ + R +G Q AL L++R+++ Y R ++ +
Sbjct: 60 YINGYSIRTDRKA-ARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 418 EAAKI-AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
+ A+ +L G K KLS+A A++ PS+LLLDE T G
Sbjct: 119 RVLGLTDKANKRARTLSGG---------------MKRKLSLAIALIGGPSVLLLDEPTSG 163
Query: 477 LDFEAERAVQEALDLLMLGRSTIII------ARRLSLIRNADYIAVMDEGRLFEMGTHDE 530
LD + RA+ + + + GRS I+ A L D IA+M +G+L +G+ E
Sbjct: 164 LDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL-----CDRIAIMSDGKLRCIGSPQE 218
Query: 531 L 531
L
Sbjct: 219 L 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 7e-21
Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 21/225 (9%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ELK V + +L+N SL V G+ +A+ G SG GKST++ ++ P +G +
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIY---ARHNASE--AEVKEAARI 1168
L +G D+ R + Q P +F T+ +N+I+ R+ + A + AR
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARF 120
Query: 1169 ANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESS 1228
A ++ +L+ G+KQRIA+ R + ILLLDE +S+++ +
Sbjct: 121 ALPDSILTK-----------NITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
Query: 1229 RVVQEALDTLIMGNKTTIL-IAH-RAAMMRHVDNIVVLNGGRIVE 1271
R ++E + + +L I H + +RH D ++ L G E
Sbjct: 170 RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 8e-21
Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 19/245 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I +N YFS+ S+ E P LS L VP VA+VG G GK+S+I M LGE+
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM-------LGEL 667
Query: 369 --LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAH 426
D + +R + V Q + + ++RDNI +G ++ E A +
Sbjct: 668 PPRSDASVV-------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ 720
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
+ L G T++G G+ ++ QK ++S+ARAV N + + D+ LD R V
Sbjct: 721 HDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780
Query: 487 EALDLLMLGRST-IIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545
+ L T +++ +L + D I ++ EG + E GT++EL G L+ +L+ E
Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLM--E 838
Query: 546 EAAKL 550
A K+
Sbjct: 839 NAGKM 843
|
Length = 1622 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 9e-21
Identities = 70/240 (29%), Positives = 117/240 (48%), Gaps = 26/240 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----P 363
+E +N+ Y E L+ L + K AL+G +G GKS+ + + R D
Sbjct: 5 MESKNLNLWY---GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 364 TLGEVLLDGENI--KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG-------RDATLD 414
GEVLLDG+NI K++ + LR ++G+V Q+P +SI DN+AYG LD
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 415 QI-EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473
+I E A K A +L + + ++ L L+ Q+ +L IAR + + P ++L+DE
Sbjct: 122 KIVEWALKKA-------ALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEP 174
Query: 474 TGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELL 532
T LD + +++ + L + +I+ + R +DY A G L E +++
Sbjct: 175 TSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 1e-20
Identities = 69/227 (30%), Positives = 101/227 (44%), Gaps = 38/227 (16%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E V S+ + +L L+V + VA++G +G GKS+++ L+ PT GEV
Sbjct: 4 LEIEGVSKSF---GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHT 427
LLDG + IG V QE ALL L++ DN+A G + EA + A
Sbjct: 61 LLDGRPVTGPG-----PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKEL- 114
Query: 428 FISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FE 480
LE VG AG L+ + +++IARA+ P +LLLDE G LD
Sbjct: 115 ----LEL-----VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 481 AERAVQEALDLLMLGRSTIII-------ARRLSLIRNADYIAVMDEG 520
E E L L R T+++ A L+ D + V+
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLA-----DRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 1e-20
Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 26/248 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+EL+ + + V L SL V G+ A++G +G+GKST++ ++ Y P +G++
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1114 LLDGRDLKLYNLRWLRNH-LGLVQQEPIIFST-TIRENIIYARHNAS------EAEVKEA 1165
L+DG+ + + R + V QE + ++ ENI R ++
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
AR A + P DT VG DL+ Q+Q + IAR + +A +L+LDE ++++
Sbjct: 126 ARELLARLGLDIDP---DTLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRIVEEGTHDSLLAK 1281
+ + + + + L I I+HR + V D I VL GR+V + ++
Sbjct: 179 KETERLFDLIRRLKAQGVAIIYISHR---LDEVFEIADRITVLRDGRVVGTRPTAAETSE 235
Query: 1282 NGLYVRLM 1289
+ L VRLM
Sbjct: 236 DEL-VRLM 242
|
Length = 500 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 1e-20
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 27/229 (11%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ L + F Y +P +F L G+ A+VG SGSGKST+++LI F P +G+V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARH-----NASEAE-VKEAA 1166
L++G D+ + ++ QE +F+ T+ +N+ A + + ++ A
Sbjct: 56 LINGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
LP +L+ G++QR+A+ARV++++ P+LLLDE ++++
Sbjct: 114 ARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
Query: 1227 SSRVVQEALDTLIMGNKTTILI-AHRAAMMRHV-DNIVVLNGGRIVEEG 1273
+ + + L K T+L+ H+ + + +V L+ GRI +G
Sbjct: 163 LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 71/259 (27%), Positives = 124/259 (47%), Gaps = 26/259 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE +++F Y + L G L++P AL+G NG+GKS+++ + Y P G V
Sbjct: 5 IEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYG-------RDATLDQIEEA 419
+ G + +W+RS++GLV Q+P + S ++ D++A+G +D ++EEA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
K F + L+ QK +++IA + ++P +++LDE LD
Sbjct: 123 LKAVRMWDFRD-----------KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 480 EAERAVQEALDLLMLGRSTIIIARR-LSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDL 537
+ + E LD L T+I+A + L AD + V+ EGR+ G LL D+
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD-KSLLTDEDI 230
Query: 538 YAEL-LKCEEAAKLPRRMP 555
+ L+ A++ +P
Sbjct: 231 VEQAGLRLPLVAQIFEDLP 249
|
Length = 274 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 2e-20
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 27/224 (12%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-E 381
+ IL G LTVP + VAL+GRNG+GK++++ + P G + DG +I L E
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 382 WLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYE--- 437
R+ IG V + + L++ +N+ G A +A LE+ YE
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----------RLERVYELFP 120
Query: 438 ---TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM- 493
+ + L+ ++ L+IARA++ P +LLLDE + GL A + V+E + +
Sbjct: 121 RLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRE 177
Query: 494 ---LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
G + +++ + AD V++ GR+ GT ELLA
Sbjct: 178 LRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 35/243 (14%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E + F Y +R L TV + VAL+G NG+GKS++ L+ R Y G++
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNIAYGRDATLDQI---EEAAKIAH 424
+ G +++ L ++G+V Q+P L L LS+R N+ Y A L + E A+IA
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRY--HAALHGLSRAEARARIAE 115
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
+ E+ + +V L + ++ IARA+L P++LLLDE T GLD + A
Sbjct: 116 LLARLGLAERADD-KVR----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAA 170
Query: 485 VQEALDLLMLGRSTIIIARRLSL-----------IRNADYIAVMDEGRLFEMGTHDELLA 533
+ + L AR L I D + V+ GR+ G EL
Sbjct: 171 ITAHVRAL---------ARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221
Query: 534 TGD 536
Sbjct: 222 ATG 224
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 2e-20
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 26/233 (11%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E +++ + YP E L + K G+ VA++G +G+GKST+ P +G+V
Sbjct: 2 LETRDLKYSYPDGTEAL--KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1114 LLDGRDLKLYNLRWL---RNHLGLVQQEP--IIFSTTIRENIIYARHNAS------EAEV 1162
L+ G +K Y+ + L R +G+V Q P +F+ T+ E++ + N E V
Sbjct: 60 LIKGEPIK-YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
KEA + F + PH H L+ GQK+R+AIA ++ I++LDE +S
Sbjct: 119 KEALKAVGMEGFENKPPH----H-------LSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167
Query: 1223 IESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGT 1274
++ + + + L L T I+ H ++ + D + V++ G+I++EGT
Sbjct: 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
Length = 275 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 35/243 (14%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL-------- 1122
VL SL+ N G ++++G SGSGKST + I P G ++++G+ + L
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 1123 -----YNLRWLRNHLGLVQQEPIIFS-TTIRENIIYA--------RHNASEAEVKEAARI 1168
LR LR L +V Q ++S T+ EN++ A + A E VK A++
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 1169 ANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESS 1228
P V L+ GQ+QR++IAR + +LL DE +S+++ E
Sbjct: 140 GIDERAQGKYP-----------VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
Query: 1229 RVVQEALDTLIMGNKTTILIAHRAAMMRHVDN-IVVLNGGRIVEEGTHDSLLAKNGLYVR 1287
V + L KT +++ H RHV + ++ L+ G+I EEG + L N R
Sbjct: 189 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG-NPQSPR 247
Query: 1288 LMQ 1290
L Q
Sbjct: 248 LQQ 250
|
Length = 257 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 3e-20
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 17/212 (8%)
Query: 1063 YPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL 1122
+ P+VL L + S+ V G+ V+G +GSGKST++ + ++ G+V
Sbjct: 668 FELEPKVL-LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------- 717
Query: 1123 YNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGY 1182
W + V Q+ I + T+R NI++ A + +A R++ ++ L G
Sbjct: 718 ----WAERSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGL 772
Query: 1183 DTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE-SSRVVQEALDTLIMG 1241
+T +G +GV+L+ GQK R+++AR V N + LLD+ S++++ RVV+E + G
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832
Query: 1242 NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG 1273
KT +L H+ ++ D +V L GR+ G
Sbjct: 833 -KTRVLATHQVHVVPRADYVVALGDGRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 3e-20
Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 48/245 (19%)
Query: 309 IEFRNVYFSY-LSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
IE +N+ + I L+ L +PA + ++G +G+GKS++I + PT G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 368 VLLDGENIKNLK---LEWLRSQIGLVTQEPALL-SLSIRDNIAY-----GRDATLDQIEE 418
VL+DG+++ L L R QIG++ Q LL S ++ DN+A G +I+
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPK--AEIK- 118
Query: 419 AAKIA----------HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468
A++ A + + L G QK +++IARA+ NP +L
Sbjct: 119 -ARVTELLELVGLSDKADRYPAQLSGG---------------QKQRVAIARALASNPKVL 162
Query: 469 LLDEVTGGLDFEAERAVQEALDLLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522
L DE T LD R++ L+LL LG + ++I + +++ D +AV+D GRL
Sbjct: 163 LCDEATSALDPATTRSI---LELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
Query: 523 FEMGT 527
E GT
Sbjct: 220 VEQGT 224
|
Length = 343 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 3e-20
Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 318 YLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN 377
Y PE+ L G + +AL+G NG+GKS+++ + P G VL+DGE +
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 378 LK---LEWLRSQIGLVTQEP--ALLSLSIRDNIAYG-RDATLDQIEEAAKIAHAHTFISS 431
+ LE R ++GLV Q+P L + + ++A+G + L + E ++ A T + +
Sbjct: 59 SRKGLLER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491
G R L+ +K +++IA AV + P +LLLDE T GLD + L
Sbjct: 118 S--GLRE---RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 492 LMLGRSTIIIA 502
L T++I+
Sbjct: 173 LRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 3e-20
Identities = 79/287 (27%), Positives = 133/287 (46%), Gaps = 22/287 (7%)
Query: 1022 KSLISVFEIIDRVPKIDPDDSSAVKPPNVYGS--IELKNVDFCYPSRPEVLV-------- 1071
+S+ VF+ ID +P+ +P S + IE + C+PS ++ V
Sbjct: 1170 RSVSRVFKFID-LPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYT 1228
Query: 1072 ------LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL 1125
L + S V GGQ V ++G +GSGKST++S + R G++ +DG L
Sbjct: 1229 EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTL 1287
Query: 1126 RWLRNHLGLVQQEPIIFSTTIRENI-IYARHNASEAEVKEAARIANAHHFISSLPHGYDT 1184
+ R G++ Q+ IFS T R+N+ Y + S+ E+ + A I P D
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQW--SDEEIWKVAEEVGLKSVIEQFPDKLDF 1345
Query: 1185 HVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKT 1244
+ G L+ G KQ + +AR +L A ILLLDE S+ ++ + +++++ L N T
Sbjct: 1346 VLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ-SFSNCT 1404
Query: 1245 TILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQP 1291
IL HR + +V+ G + + + LL + L+ + M
Sbjct: 1405 VILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSA 1451
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 4e-20
Identities = 68/259 (26%), Positives = 125/259 (48%), Gaps = 28/259 (10%)
Query: 286 EMISRSSSTTNYDGNTLPSVHGN---IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVAL 342
+I+ +++T D + P+ IE R++ Y + L + +P + A+
Sbjct: 14 GLITTTTATDTTDPSGDPAASSGETVIEARDLNVFY---GDEQALDDVSMDIPENQVTAM 70
Query: 343 VGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNLKLE--WLRSQIGLVTQEPA 395
+G +G GKS+ + + R D GE+ G+N+ + ++ LR +IG+V Q+P
Sbjct: 71 IGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130
Query: 396 LLSLSIRDNIAYG-----RDATLDQ-IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449
SI DN+AYG D +D+ +EE+ + A +L + Q+ +GL L+
Sbjct: 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA-------ALWDEVKDQLDSSGLDLSG 183
Query: 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL-SLI 508
Q+ +L IARA+ +P ++L+DE LD A +++ ++ L + +I+ +
Sbjct: 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAA 243
Query: 509 RNADYIAV-MDEGRLFEMG 526
R +D AV + G L E
Sbjct: 244 RISDKTAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 4e-20
Identities = 69/240 (28%), Positives = 121/240 (50%), Gaps = 26/240 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--PTL- 365
IE N Y E + + + + A++G +G GK++++ + R D P
Sbjct: 4 IEIENFSAYY---GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 366 --GEVLLDGENIKNLKLEW--LRSQIGLVTQEPALLSLSIRDNIAYG-------RDATLD 414
G++ G++I + +L+ R ++G+V Q+P +SI DN+A+G LD
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 415 QI-EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473
+I EE+ K A +L ++++ + G L+ Q+ +L IARA+ + P ++LLDE
Sbjct: 121 RIVEESLKKA-------ALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEP 173
Query: 474 TGGLDFEAERAVQEALDLLMLGRSTIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELL 532
T LD A + +++ L+ L + +I+ + IR ADYIA M G L E G E++
Sbjct: 174 TSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 5e-20
Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 27/225 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ L V + Y P F L V G+ VA++G SG+GKST+++LI F +P +G +
Sbjct: 1 LALDKVRYEYEHLP-----MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARH-----NASEAE-VKEAA 1166
++ + L + + ++ QE +F+ T+R+NI H NA + E V +AA
Sbjct: 56 KVNDQSHT--GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+ ++ LP L+ GQ+QR+A+AR +++ PILLLDE S+++
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
Query: 1227 SSRVVQEALDTLIMGNKTTILIA--HRAAMMRHVDNIVVLNGGRI 1269
+ + L + T+L+ H + I V++ G+I
Sbjct: 163 LREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 9e-20
Identities = 72/240 (30%), Positives = 117/240 (48%), Gaps = 26/240 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----P 363
I ++V+ SY L G L K+ AL+G +G GKS+ + + R D
Sbjct: 5 ISAKDVHLSY---GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 364 TLGEVLLDGENIKNLKLEW--LRSQIGLVTQEPALLSLSIRDNIAYG------RDATL-D 414
GE+ +G+NI K++ LR ++G+V Q+P S+ DN+AYG +D L D
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 415 Q-IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473
Q +EE+ K A ++ K + + R A + Q+ ++ IARA+ + P ++LLDE
Sbjct: 122 QRVEESLKQA-------AIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEP 174
Query: 474 TGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELL 532
T LD + ++E L L + I++ L R +D A + G L E G +E+
Sbjct: 175 TSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 9e-20
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 40/233 (17%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF NV +Y + L L + + + L G +G+GK++++ L+ P+ G+V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 369 LLDGENIKNLK---LEWLRSQIGLVTQEPALLS-LSIRDNIAY-----GRDATLDQIE-- 417
+ GE++ L+ L LR +IG+V Q+ LL ++ +N+A G+ Q
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 418 ---EAAKIAH-AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473
+ H A F L G E+Q++ +IARA++ +P +LL DE
Sbjct: 120 AALRQVGLEHKADAFPEQLSGG-------------EQQRV--AIARAIVNSPPLLLADEP 164
Query: 474 TGGLDFEAERAVQEALDLLM----LGRSTIIIARRLSLIRNADY-IAVMDEGR 521
TG LD + LDLL G + I+ LSL+ + + ++D+GR
Sbjct: 165 TGNLD---PDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 23/240 (9%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
IE +N+ +Y L L + + VA++G +G+GKS+++ + DPT GE
Sbjct: 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 368 VLLDGENIKNLK---LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQI------- 416
+L +G I LK L LR IG++ Q+ L+ LS+ +N+ GR
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 417 --EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474
E+ A+ A + L+K Y+ RA L+ Q+ +++IARA++ P I+L DE
Sbjct: 121 SKEDKAQALDALERVGILDKAYQ----RAS-TLSGGQQQRVAIARALVQQPKIILADEPV 175
Query: 475 GGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531
LD E+ + V + L + G + I+ ++ L + AD I + GR+ G EL
Sbjct: 176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (222), Expect = 1e-19
Identities = 62/208 (29%), Positives = 110/208 (52%), Gaps = 8/208 (3%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA---GQVLLDGRDLKLYNLRWL 1128
L + ++++ + A++G SG GKST + R D +A G V ++G+D+K ++ L
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 1129 RNHLGLVQQEPIIFSTTIRENIIYAR--HNASEAEVKEAARIANAHHFISSLPHGYDTHV 1186
R ++G+V Q+P +F +I ENI YA H + + +E A + + + D +
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-L 136
Query: 1187 GMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTI 1246
+ L+ GQ+QR+ IAR + +LLLDE +S+++ SS V++E L L N + I
Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMI 195
Query: 1247 LIAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
++ H + V D + G ++E G
Sbjct: 196 MVTHNMQQGKRVADYTAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (222), Expect = 1e-19
Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 8/208 (3%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL---GEVLLDGENIKNLKLEWLRSQIG 388
+ + K AL+G +G GKS+ + R D G V ++G+++KN + LR +G
Sbjct: 23 MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82
Query: 389 LVTQEPALLSLSIRDNIAYG---RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
+V Q+P + SI +NI+Y ++ EE A + + E+ + ++ + L
Sbjct: 83 MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE-VKDKLKQNAL 141
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
AL+ Q+ +L IARA+ + P +LLLDE T LD + ++E L L S I++ +
Sbjct: 142 ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNM 201
Query: 506 SL-IRNADYIAVMDEGRLFEMGTHDELL 532
R ADY A G L E G E
Sbjct: 202 QQGKRVADYTAFFHLGELIEFGESKEFF 229
|
Length = 246 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-19
Identities = 66/240 (27%), Positives = 114/240 (47%), Gaps = 26/240 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE+KN+ F Y E L++ S V G+ ++++G +GSGKST + LI+ + +GQ+
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNASEAEVKEAARIANA 1171
++DG L N+ +R+ +G+V Q P T+ +++ + N + R+ A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 1172 HHFISSLPHGYDTHVGMRGVD------LTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
VGM+ L+ GQKQR+AIA V I++LDEA+S ++
Sbjct: 125 LEL-----------VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 1226 ESS----RVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
E + ++ D M T I I H + D ++V+ G++ T L ++
Sbjct: 174 EGRLELIKTIKGIRDDYQM---TVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230
|
Length = 279 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 1e-19
Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 14/233 (6%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++N+ F Y +V L+ S + G+ V+++G +GSGKST LI+ ++ G+V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNASEAEVKEAARIANA 1171
+DG L N+ LR +G+V Q P T+ +++ + N + R+ A
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE----SES 1227
++ L + T R L+ GQKQR+A+A ++ I++LDE++S ++ E
Sbjct: 125 LLAVNML--DFKTREPAR---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179
Query: 1228 SRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
RV+ E + + T + I H D I+V+ G I++E L A
Sbjct: 180 MRVIHEIKEKYQL---TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 62/234 (26%), Positives = 105/234 (44%), Gaps = 40/234 (17%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I F NV +Y L +P + V L G +G+GKS+++ L+ PT G++
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 369 LLDGENIKNLK---LEWLRSQIGLVTQEPALL-SLSIRDNIAYG---RDATLDQIEEAAK 421
L++G ++ LK + +LR QIG+V Q+ LL ++ +N+A +I
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 422 IA--------HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473
A S L G E+Q++ +IARA++ P++LL DE
Sbjct: 120 EVLDLVGLKHKARALPSQLSGG-------------EQQRV--AIARAIVNQPAVLLADEP 164
Query: 474 TGGLDFEAERAVQEALDLLM----LGRSTIIIARRLSLIRNADY-IAVMDEGRL 522
TG LD + E + L LG + ++ L L+ + + +++GRL
Sbjct: 165 TGNLDPDLSW---EIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 25/230 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IEL+NV Y + L SL + G+ ++G SG GK+T++ LI F P +G++
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYA--RHNASEAEVKEAARIAN 1170
LLDG+D+ NL + + V Q +F T+ ENI + +AE+KE R+A
Sbjct: 58 LLDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE--RVAE 113
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
A + + + + L+ GQ+QR+AIAR ++ +LLLDE +++ + +
Sbjct: 114 ALDLV-----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168
Query: 1231 VQEALDTL-----IMGNKTTILIAH-RAAMMRHVDNIVVLNGGRIVEEGT 1274
+Q L L I T + + H + + D I V+N G+I + GT
Sbjct: 169 MQLELKRLQKELGI----TFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 30/207 (14%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-S 398
++G GSGKS ++ + F P G++LL+G++I NL E + I V Q AL
Sbjct: 28 FVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDISYVPQNYALFPH 85
Query: 399 LSIRDNIAYG----------RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
+++ NIAYG + + +I E I H L + ET L+
Sbjct: 86 MTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL------LNRKPET------LSGG 133
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA-ERAVQEALDLLMLGRSTII-IARRLS 506
E+Q++ +IARA+++NP ILLLDE LD E+ +E + T++ +
Sbjct: 134 EQQRV--AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
Query: 507 LIRN-ADYIAVMDEGRLFEMGTHDELL 532
AD +A+M G+L ++G +E+
Sbjct: 192 EAWALADKVAIMLNGKLIQVGKPEEVF 218
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 2e-19
Identities = 62/236 (26%), Positives = 119/236 (50%), Gaps = 17/236 (7%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++++ +++ Y L N ++K G+ A++G +G+GKST+ + P +G++
Sbjct: 6 LKVEELNYNYSDGTHALKGININIK--KGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1114 LLDGR--DLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNAS--EAEVKEAAR 1167
L DG+ D L LR +G+V Q+P +FS ++ +++ + N E EV++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1168 IANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESES 1227
A I L TH L+ GQK+R+AIA V++ +L+LDE ++ ++
Sbjct: 124 NALKRTGIEHLKDK-PTHC------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 1228 SRVVQEALDTLIMGNKTTILIA-HRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281
+ + L + TI+IA H ++ + DN+ V+ GR++ +G + A+
Sbjct: 177 VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (225), Expect = 2e-19
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 14/237 (5%)
Query: 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PT 364
E RN F Y++R + +L L + K A +G +G GKS+ + + + D
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 365 LGEVLLDGENIKNLKLEWL--RSQIGLVTQEPALLSLSIRDNIAYG-RDATLDQIEEAAK 421
GE+ G N ++ K+ L R++IG+V Q+P +SI DN+AYG R+ ++ + K
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
I ++L + + +AG AL+ Q+ +L IARA+ L P +LL+DE T LD A
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 482 ERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLY 538
++E + L S II+ ++ + + DE F G +E T ++
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQR-----ISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 2e-19
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
+I L G L V + VAL+GRNG+GK++++ + P G ++ DGE+I L
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 383 L-RSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQV 440
R I V + + L++ +N+ G A D+ + + + L E +
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRL---KERRN 131
Query: 441 GRAG-LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL-----ML 494
RAG L+ E+Q L+IARA++ P +LLLDE + GL A + V+E + +
Sbjct: 132 QRAGTLSGGEQQ--MLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRKEG 186
Query: 495 GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542
G + +++ + AD V++ GR+ GT ELLA D+ L
Sbjct: 187 GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAYL 235
|
Length = 237 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-19
Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 1054 IELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+ELK++ YPS E V VL SL + G+ VA+VG SGSGKST+++++ P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1113 VLLDGRDL------KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN----ASEAEV 1162
+ G+D+ L LR R H G + Q + S + A N A A +
Sbjct: 65 YRVAGQDVATLDADALAQLR--REHFGFIFQRYHLLSH------LTAAQNVEVPAVYAGL 116
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
+ R+ A + L G + V + L+ GQ+QR++IAR ++ ++L DE + +
Sbjct: 117 ERKQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGA 174
Query: 1223 IESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIV 1270
++S S V L L T I++ H + + ++ + G IV
Sbjct: 175 LDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 35/223 (15%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENI--KNLKLEWLR 384
L + + AL+G +G GKS+ + + R D GEVLLDG++I ++ + LR
Sbjct: 24 LDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLR 83
Query: 385 SQIGLVTQEPALLSLSIRDNIAYG------RD-ATLDQI-EEAAKIAHAHTFISSLEKGY 436
++G+V Q+P +SI DN+AYG +D LD+I E++ K A +L
Sbjct: 84 KRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA-------ALWDEV 136
Query: 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGR 496
+ ++ ++ L L+ Q+ +L IARA+ + P +LL+DE T LD + ++E + L
Sbjct: 137 KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KD 195
Query: 497 STIII-------ARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532
TI+I A R+S D A G + E G +L
Sbjct: 196 YTIVIVTHNMQQASRIS-----DKTAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-19
Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 33/246 (13%)
Query: 309 IEFRNVYFSYLSRPEI-PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+ RN+ Y L+ L + + + +VG +GSGKS++ L+ P+ G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 368 VLLDGENIKNLKLEW-LRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAH 426
+LLDG+ + K + +V Q+P SL+ R + + E + H
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPY-SSLNPRRTVG-------RILSEPLRP---H 112
Query: 427 TFISSLEKGYE--TQVG-------RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
S ++ E QVG R L+ Q+ +++IARA++ P +L+LDE T L
Sbjct: 113 GLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 478 DFEAERAVQ-EALDLL-MLGR----STIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530
D +VQ + L+LL L + + + I+ L+L+ + D IAVMD G++ E+G +E
Sbjct: 173 DV----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEE 228
Query: 531 LLATGD 536
LL+
Sbjct: 229 LLSHPS 234
|
Length = 252 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 3e-19
Identities = 65/221 (29%), Positives = 110/221 (49%), Gaps = 34/221 (15%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR----SQI 387
L V + ++G +GSGKS+++ L+ R +PT GE+L+DG++I L LR +I
Sbjct: 49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKI 108
Query: 388 GLVTQEPALLS-LSIRDNIAYG-----------RDATLDQIEEAAKIAHAHTFISSLEKG 435
+V Q ALL ++ +N+A+G + L+ +E +A + + L G
Sbjct: 109 SMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGG 168
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALDLL-M 493
+ +VG +ARA+ +P ILL+DE LD +Q E L+L
Sbjct: 169 MQQRVG---------------LARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 494 LGRSTIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELLA 533
L ++ + I L +R D IA+M +G + ++GT +E+L
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254
|
Length = 386 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-19
Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 22/217 (10%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
L + +L+V G VA++G SGSGKST++ +I P +G++ L+G+D + R
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DR 72
Query: 1131 HLGLVQQEPIIFS-TTIRENIIYA----RHNASE--AEVKEAARIANAHHFISSLPHGYD 1183
+G V Q +F T+R+NI + +H ++ A V+E + P+
Sbjct: 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN--- 129
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK 1243
L+ GQ+QR+A+AR + +LLLDE +++++ + ++ L L
Sbjct: 130 --------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 1244 -TTILIAH-RAAMMRHVDNIVVLNGGRIVEEGTHDSL 1278
TT+ + H + M D IVV++ G+I + G+ D +
Sbjct: 182 VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-19
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 44/227 (19%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENI--KNLKLEWLR 384
L +P K A +G +G GKS+ + + R D G++ LDGE+I L + LR
Sbjct: 40 LDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELR 99
Query: 385 SQIGLVTQEPALLSLSIRDNIAYG-------RD-ATLDQIEEAAKIAHAHTFISSLEKG- 435
+++G+V Q+P SI +N+AYG R A LD+I E +SL K
Sbjct: 100 ARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVE-----------TSLRKAG 148
Query: 436 ----YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491
+ ++ G L+ Q+ +L IARA+ ++P ++L+DE LD A V+E +D
Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208
Query: 492 LMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
L TI+I A R+S A G L E+G +++
Sbjct: 209 LR-QNYTIVIVTHSMQQAARVS-----QRTAFFHLGNLVEVGDTEKM 249
|
Length = 267 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 3e-19
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 14/208 (6%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
VL N +LK+ G+ +A+ G +GSGK++++ LI +P G++ GR
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ 99
Query: 1131 HLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRG 1190
+ Q I TI+ENII+ + E K + I+ P +T +G G
Sbjct: 100 -ISFSSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 1191 VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250
+ L+ GQ+ RI++AR V K+A + LLD ++ + + + E+ +M NKT IL+
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217
Query: 1251 RAAMMRHVDNIVVLNGGRIVEEGTHDSL 1278
+ ++ D I++L+ G GT L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-19
Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 20/228 (8%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
I+ G +T P L+G NGSGKS+++ L+ P G V L G ++ L
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 385 SQIGLVTQE-PALLSLSIRDNIAYGRDA-----TLDQIEEAAKIAH--AHTFISSL-EKG 435
++ LV Q+ + L++RD +A GR D +AA + A T +S L ++
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD 134
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLG 495
T G E Q++ + ARA+ P +LLLDE T LD A+ + L
Sbjct: 135 MSTLSG------GERQRVHV--ARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186
Query: 496 RSTIIIA-RRLSL-IRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
T++ A L+L D++ V+D GR+ G E+L T L +
Sbjct: 187 GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL-TPALIRAV 233
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-19
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 1063 YPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL 1122
Y +P L + SL + G+ V V+G SG GK+T+++LI F P G + L+GR ++
Sbjct: 13 YEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG 71
Query: 1123 YNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLP-H 1180
G+V Q + + +N+ + +++A R AH ++ +
Sbjct: 72 PGAE-----RGVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALVGLE 123
Query: 1181 GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL-DTLI 1239
G + L+ G +QR+ IAR + +LLLDE ++++ + +QE L D
Sbjct: 124 GAEHK---YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ 180
Query: 1240 MGNKTTILIAH---RAAMMRHVDNIVVLNG--GRIVE 1271
K +LI H A + +VVL+ GR+VE
Sbjct: 181 ETGKQVLLITHDIEEALFL--ATRLVVLSPGPGRVVE 215
|
Length = 259 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 5e-19
Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 42/241 (17%)
Query: 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK----LEWLRSQIGLVTQEPALL 397
++G +GSGKS+ + ++ R +PT G++ +DGENI E R +IG+V Q+ AL
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83
Query: 398 S-LSIRDNIAYG-----------RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
++I N + G ++ L+ ++ + H + L G + +VG
Sbjct: 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVG---- 139
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIAR 503
+ARA+ P ILL+DE LD ++Q+ L L L ++ + I
Sbjct: 140 -----------LARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188
Query: 504 RL-SLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAE-------LLKCEEAAKLPRRM 554
L IR D I +M G + ++GT DE+L + Y E L + +A ++ +RM
Sbjct: 189 DLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQVFDAERIAQRM 248
Query: 555 P 555
Sbjct: 249 N 249
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 5e-19
Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 23/244 (9%)
Query: 1060 DFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRD 1119
D CY L+N + +AV+G +G+GKST+ P +G VL+ G
Sbjct: 8 DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67
Query: 1120 LKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHN------ASEAEVKEAARIANA 1171
+ N+R +R +GLV Q P IFS T+ ++I + N V A +
Sbjct: 68 ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL 127
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
+PH L+ G+K+R+AIA V+ +L+LDE ++ ++ + + +
Sbjct: 128 EELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 1232 QEALDTLIMG-NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAKNGLY--VR 1287
+ L+ L T I H+ ++ + D I V++ GRIV GT + + + L V
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLARVH 236
Query: 1288 LMQP 1291
L P
Sbjct: 237 LDLP 240
|
Length = 277 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 5e-19
Identities = 70/251 (27%), Positives = 116/251 (46%), Gaps = 6/251 (2%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
G + +K++ Y VL N S ++ GQ V ++G +GSGKST++S R + G
Sbjct: 1 GQMTVKDLTAKYTEGGNA-VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI-IYARHNASEAEVKEAARIAN 1170
+ +DG L+ R G++ Q+ IFS T R+N+ Y + S+ E+ + A
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVG 116
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
I P D + G L+ G KQ + +AR VL A ILLLDE S+ ++ + +V
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 1231 VQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290
+++ L T IL HR M +V+ ++ + + LL + + + +
Sbjct: 177 IRKTLKQAFADC-TVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235
Query: 1291 PHYGKGLRQHR 1301
P L R
Sbjct: 236 PSDRLKLFPRR 246
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 5e-19
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 19/213 (8%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
N+ FSY + IL L + A + +AL G+NG+GK+++ ++ + G +LL+G
Sbjct: 4 NISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 373 ENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFIS 430
+ IK + R IG V Q+ L + S+R+ + G E+A +
Sbjct: 62 KPIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETV-------- 110
Query: 431 SLEK-GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA- 488
L+ R L+L+ QK +L+IA A+L +L+ DE T GLD++ V E
Sbjct: 111 -LKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 489 LDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEG 520
+L G++ I+I + D + ++ G
Sbjct: 170 RELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 5e-19
Identities = 77/272 (28%), Positives = 118/272 (43%), Gaps = 39/272 (14%)
Query: 287 MISRSSSTTNY---DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALV 343
MIS + D L +E RN+ Y + L + +P + A +
Sbjct: 1 MISHGITLMALPLLDVLNLSDEQTALEVRNLNLFY---GDKQALFDISMRIPKNRVTAFI 57
Query: 344 GRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENI--KNLKLEWLRSQIGLVTQEPAL 396
G +G GKS+++ R D GE+ LDG+NI K + + LR ++G+V Q P
Sbjct: 58 GPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117
Query: 397 LSLSIRDNIAYG-------RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449
SI +N+ YG LD+ E + A L + ++ L+
Sbjct: 118 FPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAA------LWDEVKDRLHENAFGLSG 171
Query: 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII-------A 502
Q+ +L IARA+ + P +LLLDE T LD + ++E + L + TI+I A
Sbjct: 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNMQQA 230
Query: 503 RRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534
R+S DY A M G+L E G D L +
Sbjct: 231 ARVS-----DYTAFMYMGKLVEYGDTDTLFTS 257
|
Length = 272 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 6e-19
Identities = 66/257 (25%), Positives = 111/257 (43%), Gaps = 59/257 (22%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKS----SIIPLME----RFYDPT 364
+V F + + G + + + +VG +GSGKS +I+ L+ R
Sbjct: 8 SVSF-PTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVG-- 64
Query: 365 LGEVLLDGENIKNLKLEWLR----SQIGLVTQEPALLSL----SIRDNIAYGRDATLDQI 416
GE+L DG+++ +L + LR +I ++ Q+P + SL +I D QI
Sbjct: 65 -GEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-MTSLNPVMTIGD-----------QI 111
Query: 417 EEAAKIAHAHTFISSLEKGYETQVG---RAGLALTEE------------QKIKLSIARAV 461
E ++ H S ++ E + G+ E + ++ IA A+
Sbjct: 112 AEVLRL---HGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMAL 168
Query: 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-----LGRSTIIIARRLSLIRN-ADYIA 515
LNP +L+ DE T LD + + LDLL G + I+I L ++ AD +A
Sbjct: 169 ALNPKLLIADEPTTALDVTVQAQI---LDLLKELQREKGTALILITHDLGVVAEIADRVA 225
Query: 516 VMDEGRLFEMGTHDELL 532
VM GR+ E G +E+
Sbjct: 226 VMYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 6e-19
Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 9/231 (3%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF---YDPTL---G 366
N+ YL + IL + +P ++G +GSGKS+++ ++ R YD + G
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEP-ALLSLSIRDNIAYG-RDATLDQIEEAAKIAH 424
+VL G++I + LR ++G+V Q+P LSI DNIAY + + + E KI
Sbjct: 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
L K ++ L+ Q+ +L+IARA+ L P +LL+DE T +D +A
Sbjct: 132 ECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQA 191
Query: 485 VQEALDLLMLGRSTIIIARR-LSLIRNADYIAVMDEGRLFEMGTHDELLAT 534
+++ + L + +I++ + R ADY+A + G L E G+ +E+ +
Sbjct: 192 IEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 7e-19
Identities = 62/215 (28%), Positives = 108/215 (50%), Gaps = 21/215 (9%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNLKLE 381
L +++P + AL+G +G GKS+++ R D G++L +GENI + +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 382 --WLRSQIGLVTQEPALLSLSIRDNIAYG------RD-ATLDQIEEAAKIAHAHTFISSL 432
LR +IG+V Q P SI +N+AYG ++ TLD I E + + A +L
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKS-LKGA-----AL 135
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492
+ ++ + L+L+ Q+ +L IAR + +NP ++L+DE LD A +++ ++ L
Sbjct: 136 WDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195
Query: 493 MLGRSTIIIARRLS-LIRNADYIAVMDEGRLFEMG 526
+ II+ + R +DY M G+L E
Sbjct: 196 KKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 8e-19
Identities = 62/233 (26%), Positives = 118/233 (50%), Gaps = 18/233 (7%)
Query: 1076 SLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLV 1135
S + GQT+A++G +GSGKST+ ++ +P +G++L++ L + + + ++
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMI 92
Query: 1136 QQEPIIFSTTI--RENI-----IYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGM 1188
Q+P +T++ R I R N + +I + LP H
Sbjct: 93 FQDP---NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD----HANY 145
Query: 1189 RGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE-SESSRVVQEALDTLIMGNKTTIL 1247
L PGQKQR+A+AR ++ I++ DEA +S++ S S+++ L+ + I
Sbjct: 146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205
Query: 1248 IAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLA--KNGLYVRLMQPHYGKGL 1297
+ M++H+ D ++V++ G +VE G+ +LA + L RL++ H+G+ L
Sbjct: 206 VTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESHFGEAL 258
|
Length = 267 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 1e-18
Identities = 85/383 (22%), Positives = 165/383 (43%), Gaps = 47/383 (12%)
Query: 14 KFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVL 73
K+V L +E ++ +LYI+ IA +F + ++ + GE+ ++ R + +
Sbjct: 850 KYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENI 909
Query: 74 LNQDMSFFDTYGNN-GDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQ 132
L Q++SFFD + G + + + DV L+++ L + + H + F + ++F C
Sbjct: 910 LYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFC-- 967
Query: 133 IALITLCTGPFIVAA-GGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTN--E 189
P + A G IF+ A I+ + ++ ++ T++A+ + E
Sbjct: 968 ---------PIVAAVLTGTYFIFMRVFA--IRARLTANKDVEKKEINQPGTVFAYNSDDE 1016
Query: 190 TLAKYSYAT-----SLQATLRYGI------LI--------------SLVQGLGLGFTYGL 224
S+ ++ + YG+ LI +LV + GF+
Sbjct: 1017 IFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSA 1076
Query: 225 AICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRL 284
+ + W G FL+ + + +LF + +G + + + +++ +
Sbjct: 1077 QLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKY 1136
Query: 285 YEMISRSSSTTNYDGNTLP-----SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKA 339
Y +I R S+ D + + G IE +V F Y+SRP +PI + +KK
Sbjct: 1137 YPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKT 1196
Query: 340 VALVGRNGSGKSSIIPLMERFYD 362
A+VG GSGKS+++ L+ RFYD
Sbjct: 1197 TAIVGETGSGKSTVMSLLMRFYD 1219
|
Length = 1466 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 62/218 (28%), Positives = 104/218 (47%), Gaps = 29/218 (13%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE NV YP V L + SL + G+ + + G SG+GK+T++ L+ P GQV
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1114 LLDGRDLKLYNLR---WLRNHLGLVQQE-PIIFSTTIRENI------IYARHNASEAEVK 1163
+ G D+ R LR +G+V Q+ ++ T+ EN+ + + V
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
A R H + P L+ G++QR+AIAR ++ + P+LL DE + ++
Sbjct: 120 AALRQVGLEHKADAFP-----------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 1224 ESESSRVVQEALDTLIMGNK--TTILIA-HRAAMMRHV 1258
+ + S + LD L NK TT+++A H +++ V
Sbjct: 169 DPDLS---ERILDLLKRLNKRGTTVIVATHDLSLVDRV 203
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 1e-18
Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 23/224 (10%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRD---LKLYN 1124
++ L SL+V G+ VA++G +G+GK+T++ I P +G+++ DG D L +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 1125 LRWLRNHLGL--VQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHG 1181
R LG+ V + IF T+ EN++ + + E +E + + L
Sbjct: 75 ----RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER-DLEEVYELFPRLKER 129
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
+ R L+ G++Q +AIAR ++ +LLLDE S + + ++V+E + +
Sbjct: 130 RNQ----RAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKEL 182
Query: 1242 NK----TTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLA 1280
K T +L+ A + D VL GRIV GT LLA
Sbjct: 183 RKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 1e-18
Identities = 62/230 (26%), Positives = 110/230 (47%), Gaps = 10/230 (4%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I L+NV + YP L N +L + G+ + ++G +GSGKST+ + P G+V
Sbjct: 2 IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1114 LLDGRDL-KLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNASEAEVKEAARIAN 1170
L+ G D L+ +R +G+V Q P T+ E++ + N ++ R+
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
A I + + + + G GQ Q +A+A ++ L+ DE +S ++ +S
Sbjct: 120 ALAEIGLEKYRHRSPKTLSG-----GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174
Query: 1231 VQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
V E + L KT + I H + D I+V++ G+IV EG +++L+
Sbjct: 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-18
Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 30/241 (12%)
Query: 1053 SIELKNVDFCY-PSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA 1110
SI+ +NVD+ Y P P E L N S ++ G VA+VG +GSGKST++ P +
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 1111 GQVLLDGRDLKL----YNLRWLRNHLGLVQQ--EPIIFSTTIRENIIYARHN--ASEAEV 1162
G + + G + NL+ LR + LV Q E +F T+ +++ + N SE E
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 1163 KEAA-----RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLD 1217
KE A ++ + IS P +L+ GQ +R+AIA V+ IL LD
Sbjct: 122 KEKALKWLKKVGLSEDLISKSP-----------FELSGGQMRRVAIAGVMAYEPEILCLD 170
Query: 1218 EASSSIESESSRVVQEALDTLIMGNKTTILIAHRA-AMMRHVDNIVVLNGGRIVEEGTHD 1276
E ++ ++ E + + + T IL+ H + + D+++VL G++++ H
Sbjct: 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK---HA 227
Query: 1277 S 1277
S
Sbjct: 228 S 228
|
Length = 287 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 1e-18
Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Query: 1067 PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGR--DLKLYN 1124
+ LSN ++++ GQ +VG G GKS+++ I + G+V + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 1125 LRWLRNH--LGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGY 1182
RN + Q+P + + T+ ENI + ++ K + I LP G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGD 130
Query: 1183 DTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE-SSRVVQEALDTLIMG 1241
T +G RG++L+ GQ+QRI +AR + +N I+ LD+ S+++ S ++QE + +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 1242 NK-TTILIAHRAAMMRHVDNIVVLNGG 1267
+K T +L+ H+ + H D I+ + G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 2e-18
Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 42/252 (16%)
Query: 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKS----SIIPLMERFYDP 363
+E N+ + + +P + V + + +VG +GSGKS +++ L+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 364 TLGEVLLDGENIKNLKLEWLRS----QIGLVTQEP-ALL--SLSIRDNIAYGRDATLDQI 416
T GEV+LDG ++ L +R +I ++ Q+P L ++I D QI
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGD-----------QI 114
Query: 417 EEAAKIAHAHTFISSLEKGYET--QVGRAGLALTEE-----------QKIKLSIARAVLL 463
EA H S E + + GL E + ++ IA A+ L
Sbjct: 115 REAL---RLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL 171
Query: 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEG 520
P +L+ DE T LD + + + L L LG + + I L ++ AD + VM +G
Sbjct: 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231
Query: 521 RLFEMGTHDELL 532
+ E G +E+L
Sbjct: 232 EIVETGPTEEIL 243
|
Length = 539 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 21/221 (9%)
Query: 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114
++N+ F Y E+L + SL + G+ +A+ G +G+GK+T+ ++ +G +L
Sbjct: 1 RIENISFSYKKGTEIL--DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1115 LDGRDLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNASE--AEVKEAARIAN 1170
L+G+ +K + R +G V Q+ +F+ ++RE ++ + + + +
Sbjct: 59 LNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
+ P L+ GQKQR+AIA +L +L+ DE +S ++ ++
Sbjct: 116 LYALKERHPL-----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164
Query: 1231 VQEALDTLIMGNKTTILIAHRAA-MMRHVDNIVVLNGGRIV 1270
V E + L K I+I H + + D +++L G IV
Sbjct: 165 VGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 41/225 (18%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENI-KNLKLEWLRS 385
L +PA++ AL+G +G GKS+++ + R D G++ +DGE+I N+ + LR
Sbjct: 24 LPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI 83
Query: 386 QIGLVTQEPALLSLSIRDNIAYGRDA-------TLDQI-EEAAKIAHAHTFISSLEKGYE 437
++G+V Q+P +SI +N+AYG A LD++ E + + A +L +
Sbjct: 84 KVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGA-------ALWDEVK 136
Query: 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRS 497
++ L+ Q+ +L IAR + + P ++L+DE T LD A ++E ++ L +
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196
Query: 498 TIII------ARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536
+I+ ARR+S D F MG EL+ D
Sbjct: 197 IVIVTHSMQQARRIS-----------DRTAFFLMG---ELVEHDD 227
|
Length = 249 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 309 IEFRNVYFSYLS-RP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
I +NV ++Y + P E L LT+ A +G GSGKS+I+ L+ + PT G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 367 EVLLDGENI----KNLKLEWLRSQIGLVTQ--EPALLSLSIRDNIAYGRDATLDQIEEAA 420
V +D I KN ++ +R ++GLV Q E L ++ ++A+G EEA
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
+A + + E+ + L+ Q +++IA + + P IL+LDE T GLD +
Sbjct: 123 ALAREKLALVGIS---ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179
Query: 481 AERAVQEALDLLMLGRSTIIIARRL--SLIRNADYIAVMDEGRLFEMGT 527
+ + L TI++ L + AD++ V+++G+L G
Sbjct: 180 GRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (212), Expect = 2e-18
Identities = 67/240 (27%), Positives = 115/240 (47%), Gaps = 24/240 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-- 366
I+ R V F Y +L + P ++ A++G +G GKS+++ + R D G
Sbjct: 5 IKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 367 ---EVLLDGENI--KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG-------RDATLD 414
VLLD ENI NL + LR ++G+V Q+P SI DN+A+G + LD
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 415 QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474
++ E K ++L + + ++GLAL+ Q+ +L IAR + + P ++L+DE
Sbjct: 122 EVVE--KSLRQ----AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 475 GGLDFEAERAVQEALDLLMLGRSTIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDELLA 533
LD + ++E + L + I+ + R +D+ + G L E G E+ +
Sbjct: 176 SALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235
|
Length = 251 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 35/240 (14%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
SIE++NV + L + SL + G+ VA++G SGSGK+T++ LI P +G
Sbjct: 2 SIEVRNVSKRFGDFV---ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIY------ARHNASEAEVKEA 1165
+L G D ++ ++G V Q +F T+ +N+ + EAE++
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK 116
Query: 1166 A----RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA-- 1219
++ P L+ GQ+QR+A+AR + +LLLDE
Sbjct: 117 VHELLKLVQLDWLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFG 165
Query: 1220 --SSSIESESSRVVQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVVLNGGRIVEEGTHD 1276
+ + E R ++ D L + TT+ + H + + D +VV+N GRI + GT D
Sbjct: 166 ALDAKVRKELRRWLRRLHDEL---HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 33/241 (13%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE KNV + VL N L ++ G+ V ++G SGSGKST++ I + + +G +
Sbjct: 2 IEFKNVSKHFGPTQ---VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1114 LLDGRDLK--LYNLRWLRNHLGLVQQEPIIF-STTIRENIIYA-RH--NASEAEVKEAAR 1167
++DG + + R +R G+V Q+ +F T EN+++ AS+ E ++ AR
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 1168 --------IANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
AHH+ S +L+ GQ+QR+AIAR + ++L DE
Sbjct: 119 ELLAKVGLAERAHHYPS---------------ELSGGQQQRVAIARALAVKPKLMLFDEP 163
Query: 1220 SSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSL 1278
+S+++ E V + + L T +++ H V ++ ++ GRI E+G L
Sbjct: 164 TSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
Query: 1279 L 1279
+
Sbjct: 224 I 224
|
Length = 240 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 2e-18
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 32/229 (13%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV-----LLDG-RDLKLYN 1124
VL L+V G+ VA++G SGSGK+T++ I P AG + +D R L
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 1125 --LRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHG 1181
+R LR H+G V Q +F T+ ENII + E KE A A A ++
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP-VIVKGEPKEEA-TARARELLAK---- 131
Query: 1182 YDTHVGMRGVD------LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL 1235
VG+ G + L+ GQ+QR+AIAR + ++L DE +S+++ E +V E L
Sbjct: 132 ----VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVL 184
Query: 1236 DT---LIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLA 1280
+T L +T +++ H + R V D + ++ GRIVE+G +L A
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 3e-18
Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 45/236 (19%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE +N++ S+ +L G LTV + V ++G +GSGKS+++ + +P G +
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 369 LLDGENIKNLKLEW--LRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQI-------EE 418
++DG + + K LR ++G+V Q+ L L++ +NI TL I E
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENI------TLAPIKVKGMSKAE 111
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDE 472
A + A LEK VG A A L+ Q+ +++IARA+ +NP ++L DE
Sbjct: 112 AEERALEL-----LEK-----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161
Query: 473 VTGGLDFEAERAVQEALDLLML-----GRSTIIIARRLSLIRN-ADYIAVMDEGRL 522
T LD E V E LD +M G + +++ + R AD + MD+GR+
Sbjct: 162 PTSALDPE---LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (219), Expect = 3e-18
Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 34/220 (15%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK----LEWLRSQI 387
L + + ++G +GSGKS+++ L+ R +PT G+VL+DG +I + E R +I
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 388 GLVTQEPALLS-LSIRDNIAYG-----------RDATLDQIEEAAKIAHAHTFISSLEKG 435
+V Q AL+ +++ DN A+G R+ LD + + +AH++ L G
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGG 168
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLG 495
+VG +ARA+ +NP ILL+DE LD +Q+ L L
Sbjct: 169 MRQRVG---------------LARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213
Query: 496 --RSTIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDELL 532
R+ + I+ L +R D IA+M G + ++GT DE+L
Sbjct: 214 HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 17/209 (8%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLK---LYNLRW 1127
VL + +L++N G+ V + G SGSGK+T+++LI G + + G++L L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 1128 LRNHLGLV-QQEPIIFSTTIRENIIYARHNASEAEVKE----AARIANAHHFISSLPHGY 1182
LR ++G + Q ++ T R+N+ A E++ A + ++ G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMA------LELQPNLSYQEARERARAMLEAV--GL 131
Query: 1183 DTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGN 1242
H+ +L+ GQKQR+AIAR ++ ++L DE +++++S+S R V E + L
Sbjct: 132 GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1243 KTTILI-AHRAAMMRHVDNIVVLNGGRIV 1270
TILI H ++ D IV + G+++
Sbjct: 192 GCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 3e-18
Identities = 60/211 (28%), Positives = 104/211 (49%), Gaps = 25/211 (11%)
Query: 1087 VVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TT 1145
++G SG GK+T++ L+ F P +G ++LDG D+ N+ H+ +V Q +F T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT--NVPPHLRHINMVFQSYALFPHMT 58
Query: 1146 IRENIIYA----RHNASE--AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199
+ EN+ + + +E V EA R+ F PH L+ GQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH-----------QLSGGQQQ 107
Query: 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI--MGNKTTILIAH-RAAMMR 1256
R+A+AR ++ ILLLDE S+++ + +Q L T+ +G T + + H + M
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG-ITFVFVTHDQEEAMT 166
Query: 1257 HVDNIVVLNGGRIVEEGTHDSLLAK-NGLYV 1286
D I ++ G+I + GT + + + L+V
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 4e-18
Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 30/238 (12%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+I NV + + L L + + + VAL+G +G+GKS+++ ++ P G
Sbjct: 2 SIRINNVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 368 VLLDGENIKNLKLEWLRS-QIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHA 425
+ L+G + ++ +R ++G V Q AL +++ DNIA+G ++ EA A
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 426 HTFI-----SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
+ L Y Q L+ Q+ ++++ARA+ + P +LLLDE G LD +
Sbjct: 119 EELLRLVQLEGLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171
Query: 481 AERAVQEALDLLM--LGRSTIII------ARRLSLIRNADYIAVMDEGRLFEMGTHDE 530
+ ++ L L LG +T+ + A L AD + V+++GR+ ++G DE
Sbjct: 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL-----ADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 4e-18
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 28/236 (11%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--PTL---GE 367
N YF + IL L +P AL+G +G GKS+ I + R D P G
Sbjct: 10 NTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH 64
Query: 368 VLLDGENI--KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG--------RDATLDQIE 417
+ LDG +I + + LR ++G+V Q+P SI DN+AYG D +++E
Sbjct: 65 IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE 124
Query: 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
E+ K A +L + ++ ++ L L+ Q+ +L IAR + ++P ++L+DE L
Sbjct: 125 ESLKAA-------ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
Query: 478 DFEAERAVQEALDLLMLGRSTIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDELL 532
D + +++ + L + +I+ + R + Y + G + E G D++
Sbjct: 178 DPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233
|
Length = 250 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 4e-18
Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 43/222 (19%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
+ +L L V + +G NG+GK++ + ++ P GE+ DG++ +
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 383 LRSQIGLVTQEPAL-LSLSIRDNIAYG------RDATLDQIEEAAKIAHAHTFISSLEKG 435
+IG + + P +L+ R+N+ R +D++ +
Sbjct: 72 --RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD----------------- 112
Query: 436 YETQVGRAGLALTEEQKIK---------LSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
GL + ++K+K L IA A+L NP +L+LDE T GLD + + ++
Sbjct: 113 ------VVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELR 166
Query: 487 EAL-DLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526
E + L G + +I + LS I+ AD I ++++G+L E G
Sbjct: 167 ELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 4e-18
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 64/221 (28%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+EL+ + + V L SL V G+ A++G +G+GKST++ ++ Y P +G++
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
L+DG++ + + +A A IA +
Sbjct: 58 LVDGKE--------------------------------VSFASPRDAR---RAGIAMVYQ 82
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
L+ G++Q + IAR + +NA +L+LDE ++++ + +
Sbjct: 83 -------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
Query: 1234 ALDTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRIV 1270
+ L I I+HR + V D + VL GR+V
Sbjct: 124 VIRRLRAQGVAVIFISHR---LDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 6e-18
Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 32/248 (12%)
Query: 1053 SIELKNVDFCY-PSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA 1110
+I NV + Y P E + + + + G+ A+VG +GSGKST+I I P
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 1111 GQVLLDGRDLKLYN------LRWLRNHLGLVQQ--EPIIFSTTIRENIIYARHN--ASEA 1160
G V +D D+ + + +R +R +G+V Q E +F T+ II+ N +
Sbjct: 62 GTVTVD--DITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119
Query: 1161 EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP-----GQKQRIAIARVVLKNAPILL 1215
EVK AH + L G+ V + +P GQ ++IAI ++ N I++
Sbjct: 120 EVKN-----YAHRLLMDL--GFSRDV----MSQSPFQMSGGQMRKIAIVSILAMNPDIIV 168
Query: 1216 LDEASSSIESESSRVVQEALDTL-IMGNKTTILIAHRA-AMMRHVDNIVVLNGGRIVEEG 1273
LDE ++ ++ +S R V L +L NKT IL++H + R+ D ++V+ G IV +
Sbjct: 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQT 228
Query: 1274 THDSLLAK 1281
+ L
Sbjct: 229 SPKELFKD 236
|
Length = 286 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 7e-18
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 20/221 (9%)
Query: 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL------KLY 1123
L + + SL + G+ ++G+SGSGKST++ L+ R +P GQVL+DG D+ +L
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 1124 NLRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNA--SEAEVKEAARIANAHHFISSLPH 1180
+R R + +V Q ++ T+ +N + A + E +E A A + + H
Sbjct: 102 EVR--RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH 159
Query: 1181 GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM 1240
Y +L+ G +QR+ +AR + N ILL+DEA S+++ +Q+ L L
Sbjct: 160 SYPD-------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212
Query: 1241 GN-KTTILIAHRA-AMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
+ +T + I+H MR D I ++ G +V+ GT D +L
Sbjct: 213 KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-18
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 15/201 (7%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI--KNLKLEWLRSQIGLVTQEP--A 395
V L+G GSGKS++I + PT G++++DG +I K +KL +R ++GLV Q P
Sbjct: 36 VGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQ 95
Query: 396 LLSLSIRDNIAYG---RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452
L +I +IA+G + ++IE K A + YE ++ L+ QK
Sbjct: 96 LFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD-----YEDYKDKSPFELSGGQK 150
Query: 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL---IR 509
+++IA V + P IL+LDE T GLD + + + L + II S+ +
Sbjct: 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAK 210
Query: 510 NADYIAVMDEGRLFEMGTHDE 530
AD I VM++G+ GT E
Sbjct: 211 LADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 8e-18
Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 44/233 (18%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENI--KNL 378
IL L + ++ A +G +G GKS+ + R D GE+ +DG ++ +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYG--------RDATLDQIEEAAKIAHAHTFIS 430
+ LR+++G+V Q+P SI DN+AYG LD+I E
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVE-----------K 128
Query: 431 SLEKG--YETQVGR---AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
SL +E R + L+ Q+ +L IARA+ + P++LL+DE LD A +
Sbjct: 129 SLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188
Query: 486 QEALDLLMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ + L TII+ A+++S D +A GR+ E T E+
Sbjct: 189 ENLIQELKK-NFTIIVVTHSMKQAKKVS-----DRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 8e-18
Identities = 62/243 (25%), Positives = 119/243 (48%), Gaps = 34/243 (13%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
++ +N+ Y ++ +L++ SL + G+ A++G +G GKST++ R P +G
Sbjct: 2 TLRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT 58
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLV-QQEPIIFSTTIRENIIYAR--HNA--SEAEVKEAAR 1167
V L + + + + R L L L+ Q T+RE + Y R + ++ AR
Sbjct: 59 VFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR 118
Query: 1168 IANAHHFISSLPHGYDTHVG----MRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS-- 1221
+ A T + R DL+ GQ+QR +A V+ ++ P++LLDE ++
Sbjct: 119 VNQAME---------QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169
Query: 1222 --SIESESSRVVQEALDTLIMGNKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGTHD 1276
+ + E R+++E L KT + + H +A+ R+ D++VVL G ++ +GT +
Sbjct: 170 DINHQVELMRLMRE----LNTQGKTVVTVLHDLNQAS--RYCDHLVVLANGHVMAQGTPE 223
Query: 1277 SLL 1279
++
Sbjct: 224 EVM 226
|
Length = 255 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 1e-17
Identities = 74/274 (27%), Positives = 124/274 (45%), Gaps = 22/274 (8%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I +N YFS+ S+ P LS L +P VA+VG G GK+S+I M LGE
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAM-------LGE- 666
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTF 428
L E + +R + V Q + + ++R+NI +G D ++ A +
Sbjct: 667 LSHAETSSVV----IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD 722
Query: 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV-QE 487
+ L T++G G+ ++ QK ++S+ARAV N I + D+ LD V
Sbjct: 723 LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782
Query: 488 ALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547
+ + G++ +++ +L + D I ++ EG + E GT EL +G L+ +L+ E A
Sbjct: 783 CMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLM--ENA 840
Query: 548 AKLPRRMPVRNYKE-------TSTFQIEKDSSAS 574
K+ V E T T + + + S
Sbjct: 841 GKMDATQEVNTNDENILKLGPTVTIDVSERNLGS 874
|
Length = 1495 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 1e-17
Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 29/229 (12%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E R + S+ + L G LTV + AL+G NG+GKS+++ ++ Y P GE+
Sbjct: 9 LELRGISKSF---GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 369 LLDGENIKNL-KLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDAT-----LDQ---IEE 418
L+DG+ + + L + I V QE +L+ +LS+ +NI GR+ T +D+
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
A ++ +T VG L++ + Q + IARA+ + +L+LDE T L
Sbjct: 126 ARELLARLGLDIDP----DTLVGD--LSIAQRQMV--EIARALSFDARVLILDEPTAALT 177
Query: 479 FEAERAVQEALDLLML----GRSTIIIARRLS-LIRNADYIAVMDEGRL 522
+ + DL+ G + I I+ RL + AD I V+ +GR+
Sbjct: 178 ---VKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 1e-17
Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 35/227 (15%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNLKLE 381
L L + AL+G +G GKS+ + + R D GE+LLDGENI + ++
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 382 W--LRSQIGLVTQEPALLSLSIRDNIAYG------RDATL--DQIEEAAKIAHAHTFISS 431
LR ++G+V Q+P SI +N+AYG +D +++E + + A +
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHA-------A 134
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491
L + ++ + L L+ Q+ +L IARA+ + P +LL+DE LD A + ++E +
Sbjct: 135 LWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE 194
Query: 492 LMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
L R TIII A R+S D A G+L E+G +++
Sbjct: 195 LK-ARYTIIIVTHNMQQAARVS-----DVTAFFYMGKLIEVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 1e-17
Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 41/255 (16%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++ + +P V+ + SL V G+ A++G +G+GKST++ ++ Y P +G++
Sbjct: 5 LEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1114 LLDGRDLKLYNLR-WLRNHLGLVQQEPIIFST-TIRENIIYA---------RHNASEAEV 1162
+DG+++++ + R +R +G+V Q ++ T T+ ENII + A +
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARI 121
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
KE + LP D V DL+ G++QR+ I + + + A +L+LDE ++
Sbjct: 122 KELSERYG-------LPVDPDAKVA----DLSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 1223 I-ESESSRVVQEALDTLIMGNKTTILIAHR-AAMMRHVDNIVVLNGGRIV------EEGT 1274
+ E+ + E L L KT I I H+ +M D + VL G++V E T
Sbjct: 171 LTPQEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETT 229
Query: 1275 HDSLLAKNGLYVRLM 1289
+ L LM
Sbjct: 230 EEEL-------AELM 237
|
Length = 501 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 1e-17
Identities = 66/245 (26%), Positives = 122/245 (49%), Gaps = 22/245 (8%)
Query: 1066 RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL 1125
R V + S + GQT+A++G +GSGKST+ ++ +P +G++L+D L +
Sbjct: 23 RQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82
Query: 1126 RWLRNHLGLVQQEPIIFSTTI--RENI-----IYARHNASEAEVKEAARIANAHHFISSL 1178
+ + ++ Q+P ST++ R+ I R N + +I + L
Sbjct: 83 SYRSQRIRMIFQDP---STSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139
Query: 1179 PH--GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE-SESSRVVQEAL 1235
P Y H+ L PGQKQR+ +AR ++ +++ DEA +S++ S S+++ L
Sbjct: 140 PDHASYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLML 193
Query: 1236 DTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAK--NGLYVRLMQPH 1292
+ + I + MM+H+ D ++V++ G +VE G+ +LA + L RL+ H
Sbjct: 194 ELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGH 253
Query: 1293 YGKGL 1297
+G+ L
Sbjct: 254 FGEAL 258
|
Length = 267 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 1e-17
Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 20/229 (8%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--PTL- 365
I+ R+V F Y + L G + + K VA +G +G GKS+ + L R D P
Sbjct: 4 IDARDVNFWY---GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 366 --GEVLLDGENI--KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAK 421
GE+ +DG NI K ++++ LR +G+V Q P SI +N+AYG ++ +++ A
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG--LRVNGVKDNAF 118
Query: 422 IAHAHTFISSLEKG-----YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
I +L+ + ++ + AL+ Q+ +L IARA+ ++PS+LL+DE
Sbjct: 119 IRQ--RVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176
Query: 477 LDFEAERAVQEALDLLMLGRSTIIIARRL-SLIRNADYIAVMDEGRLFE 524
LD + V+E + L + +I+ + R +D A G + E
Sbjct: 177 LDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-17
Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 50/258 (19%)
Query: 309 IEFRNVYFSYLSRP--------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360
+ RN+ Y SR E+ + + + + LVG +GSGKS++ ++
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 361 YDPTLGEVLLDGENIKNLKLEW--LRSQIGLVTQEP-ALLS--LSIRDNIAYG------- 408
P+ G ++ DG+++ E LR +I +V Q+P + L+ +++ D +A
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG 400
Query: 409 ----RDATLDQIEEAAKI--AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462
R A + ++ E + + L G Q+ +++IARA+
Sbjct: 401 SGAERRARVAELLELVGLPPEFLDRYPHELSGG---------------QRQRVAIARALA 445
Query: 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-----LGRSTIIIARRLSLIRN-ADYIAV 516
L P +L+LDE LD + V L+LL LG + + I+ L+++R AD +AV
Sbjct: 446 LEPKLLILDEPVSALDVSVQAQV---LNLLKDLQEELGLTYLFISHDLAVVRYIADRVAV 502
Query: 517 MDEGRLFEMGTHDELLAT 534
M +GR+ E G +++
Sbjct: 503 MYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 69/247 (27%), Positives = 115/247 (46%), Gaps = 39/247 (15%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE N+ +Y + L L++ + VAL+G +G+GKS+++ + +PT G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 369 LLDGENIKNLK---LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAH 424
L+DG +I LK L LR QIG++ Q+ L+ LS+ +N+ GR
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGR------------ 106
Query: 425 AHTFISSL---------EKGYE--TQVGRAGLA------LTEEQKIKLSIARAVLLNPSI 467
+ SL ++ +VG A L+ Q+ +++IARA++ P +
Sbjct: 107 -RSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKL 165
Query: 468 LLLDEVTGGLDFEAERAVQEAL-DLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFE 524
+L DE LD + R V + L + G + I+ ++ L R AD I + +GR+
Sbjct: 166 ILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225
Query: 525 MGTHDEL 531
G EL
Sbjct: 226 DGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 2e-17
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 37/246 (15%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I ++ F Y L +V + VA+VG NGSGKS++ L+ P G +
Sbjct: 6 IRVEHISFRY-PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 369 LLDGENIKNLKLE--W-LRSQIGLVTQEP--ALLSLSIRDNIAYG-------RDATLDQI 416
+ G L E W +R Q+G+V Q P + +++D++A+G R+ ++++
Sbjct: 65 TVGG---MVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERV 121
Query: 417 EEAAKIAHAHTFI----SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472
++A + F+ L G QK +++IA + L P I++LDE
Sbjct: 122 DQALRQVGMEDFLNREPHRLSGG---------------QKQRVAIAGVLALQPDIIILDE 166
Query: 473 VTGGLDFEAERAVQEAL-DLLMLGRSTII-IARRLSLIRNADYIAVMDEGRLFEMGTHDE 530
T LD R V E + L T++ I L AD + VM++G + E GT +E
Sbjct: 167 ATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEE 226
Query: 531 LLATGD 536
+ +G
Sbjct: 227 IFKSGH 232
|
Length = 279 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 2e-17
Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 4/231 (1%)
Query: 303 PSVHGNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361
P G++ F V Y R +P +L G + ++ V +VGR GSGKS+++ R
Sbjct: 1303 PVQAGSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV 1360
Query: 362 DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAK 421
+ GE+ ++G I L LR Q ++ Q+P L ++R N+ +A+ ++ A +
Sbjct: 1361 EVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALE 1420
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS-ILLLDEVTGGLDFE 480
+ ++S +G +++V G + Q+ + +ARA+L S +L+DE T +D
Sbjct: 1421 LVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPA 1480
Query: 481 AERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+R +Q + + I IA RL + D I VMD G + EMG+ EL
Sbjct: 1481 LDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPREL 1531
|
Length = 1560 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 2e-17
Identities = 45/165 (27%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
IL+ L+V A + +A+ G +G GKS+++ ++ PT G +L +GE++ LK E R
Sbjct: 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYR 76
Query: 385 SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
Q+ Q PAL ++ DN+ + + + AA + ++ ++ + +
Sbjct: 77 QQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALD----LLARFALP-DSILTKNI 131
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
L+ +K ++++ R + P ILLLDE+T LD +R ++E +
Sbjct: 132 TELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
|
Length = 223 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 3e-17
Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I N F++ +R P L+G ++P VA+VG+ G GKSS++ + D G V
Sbjct: 637 ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEA--AKIAHAH 426
+ G + V Q+ + + S+R+NI +G+ + E ++ A
Sbjct: 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGK-----ALNEKYYQQVLEAC 737
Query: 427 TFISSLE---KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
+ LE G T++G G+ L+ QK ++S+ARAV N I L D+ +D +
Sbjct: 738 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
Query: 484 AVQEAL---DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540
+ E + + ++ ++ I++ +S + D I VM G++ EMG++ ELL +AE
Sbjct: 798 HIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAE 857
Query: 541 LLK 543
L+
Sbjct: 858 FLR 860
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-17
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 33/194 (17%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLE 381
IL LT+ K A++G +GSGKS+++ ++ G+V L+G+ L +
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 382 WLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISS---LEKGYE 437
+ R ++G + Q AL+ + ++ +N+ + + +S EK E
Sbjct: 73 FRREKLGYLFQNFALIENETVEENL---------------DLGLKYKKLSKKEKREKKKE 117
Query: 438 TQVGRAGLALTEEQKI---------KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488
+ + GL L +QKI ++++ARA+L P ++L DE TG LD + V +
Sbjct: 118 A-LEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 489 LDLLMLGRSTIIIA 502
L L TIII
Sbjct: 177 LLELNDEGKTIIIV 190
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 3e-17
Identities = 64/246 (26%), Positives = 118/246 (47%), Gaps = 26/246 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E N+ F Y ++ L+G ++ + V+++G+NGSGKS+ L++ ++ G+V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYG-------RDATLDQIEEA 419
+DGE + + LR +IG+V Q P + ++ D++A+G R+ + +++EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD- 478
+ F + R L+ QK ++++A + L P I++LDE T LD
Sbjct: 125 LLAVNMLDFKT-----------REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 479 ---FEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG 535
E R + E + L + + I L ++D I VM G + + EL AT
Sbjct: 174 TGRQEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231
Query: 536 DLYAEL 541
+ E+
Sbjct: 232 EDMVEI 237
|
Length = 277 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 3e-17
Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 34/244 (13%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV---- 1109
+E++N++ Y + L + S+++ + A +G SG GKST++ R D V
Sbjct: 26 LEVRNLNLFYGDKQ---ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 1110 -AGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA--------RHNAS 1158
G++ LDG+++ K ++ LR +G+V Q P F +I EN++Y R
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 1159 EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE 1218
EA V+ + R A + H + G+ G GQ+QR+ IAR + +LLLDE
Sbjct: 143 EA-VERSLRGAALWDEVKDRLH--ENAFGLSG-----GQQQRLVIARAIAIEPEVLLLDE 194
Query: 1219 ASSSIESESSRVVQEALDTLIMGNKTTILIA----HRAAMMRHVDNIVVLNGGRIVEEGT 1274
+S+++ S+ ++E + L +K TI+I +AA R D + G++VE G
Sbjct: 195 PTSALDPISTLKIEELITEL--KSKYTIVIVTHNMQQAA--RVSDYTAFMYMGKLVEYGD 250
Query: 1275 HDSL 1278
D+L
Sbjct: 251 TDTL 254
|
Length = 272 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-17
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 67/288 (23%)
Query: 1031 IDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRP--------EVLVLSNFSLKVNGG 1082
+ P DP P +E++++ +P + + + SL + G
Sbjct: 258 LAAEPSGDPPPLPEDAPV----LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRG 313
Query: 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN---LRWLRNHLGLVQQEP 1139
QT+ +VG SGSGKST+ + R P G++ DG+D+ + +R LR + +V Q+P
Sbjct: 314 QTLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
Query: 1140 IIFST---------TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRG 1190
+ + I E + S AE + A +
Sbjct: 373 --YGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEA------------------LEE 412
Query: 1191 VDLTP------------GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTL 1238
V L P GQ+QRIAIAR ++ ++LLDE +S+++ R VQ + L
Sbjct: 413 VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD----RSVQAQVLDL 468
Query: 1239 IMG-----NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLA 1280
+ + + I+H A++R + ++V+ G+IVE+G +++ A
Sbjct: 469 LRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-17
Identities = 55/229 (24%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++L+NV + +L+N S + G+ + G SG GKST++ ++ P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA---RHNASEAEVKEAARIAN 1170
L +G D+ R + Q P +F T+ +N+I+ R+ + A + +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPD----PAIFLDD 120
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
F +LP DT + +L+ G+KQRI++ R + +LLLDE +S+++ +
Sbjct: 121 LERF--ALP---DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
Query: 1231 VQEALDTLIMGNKTTIL-IAHRAAMMRHVDNIVVL--NGGRIVEEGTHD 1276
V E + + +L + H + H D ++ L + G + +E ++
Sbjct: 176 VNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEM-QEARYE 223
|
Length = 225 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (204), Expect = 3e-17
Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 26/234 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----P 363
I+ +++ F Y + I G + + K A++G +G GKS+ I + R +
Sbjct: 8 IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 364 TLGEVLLDGENIKN--LKLEWLRSQIGLVTQEPALLSLSIRDNIAYG-------RDATLD 414
G V G+NI + + + LR QIG+V Q P +SI +N+AYG A LD
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 415 QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474
+I E+A A L + + ++ ++ L L+ Q+ +L IARA+ + P +LL+DE
Sbjct: 125 EIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 475 GGLDFEAERAVQEALDLLMLGRSTIIIARRL-SLIRNADYIAVM--DEGRLFEM 525
LD A V+E + L + I+ + R +D+ A DE R+ +M
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQM 232
|
Length = 259 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 23/215 (10%)
Query: 1072 LSNFSLKVN---GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL----KLYN 1124
L +F+LK++ + + G SG+GKST++ I P G ++L+G L K N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 1125 LRWLRNHLGLVQQEPIIFS-TTIRENIIYA--RHNASEAEVKEAARIANAHHFISSLPHG 1181
L + +GLV Q+ +F +REN+ + R E + +
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-------- 121
Query: 1182 YDTHVGMRGVD-LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL-DTLI 1239
H+ R L+ G+KQR+A+AR + +LLLDE S+++ + L
Sbjct: 122 --DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179
Query: 1240 MGNKTTILIAHRAA-MMRHVDNIVVLNGGRIVEEG 1273
N I + H + D IVV+ GR+ G
Sbjct: 180 NLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 4e-17
Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 30/218 (13%)
Query: 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQ 392
T+ + +A++G NGSGKS++ ++ +PT GE+L++ + + +I ++ Q
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQ 94
Query: 393 EPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL------- 445
+P SL+ R I D L ++ ++ +ET + GL
Sbjct: 95 DPN-TSLNPRLRIGQILDFPL-------RLNTDLEPEQRRKQIFET-LRMVGLLPDHANY 145
Query: 446 ---ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML------GR 496
L QK ++++ARA++L P I++ DE LD +++ L LML G
Sbjct: 146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLDM----SMRSQLINLMLELQEKQGI 201
Query: 497 STIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
S I + + + +I++ +D + VM EG + E G+ ++LA
Sbjct: 202 SYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 4e-17
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 28/239 (11%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I++ ++ + VL L V G V +VG +G+GK+T++ I P AG V
Sbjct: 4 IDVSDLSV---EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQE-PIIFSTTIRENIIYARH----------NASEAEV 1162
L+ G D++ + R + V Q+ + F +R+ + R A V
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVD-LTPGQKQRIAIARVVLKNAPILLLDEASS 1221
+ A F R V L+ G++QR+ +AR + + P+LLLDE ++
Sbjct: 121 ERAMERTGVAQFAD------------RPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
Query: 1222 SIESESSRVVQEALDTLIMGNKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEGTHDSLL 1279
S++ E + L+ KT + H + R+ D +V+L GR+ G +L
Sbjct: 169 SLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-17
Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 22/242 (9%)
Query: 1054 IELKNVDFCY-PSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
I + V+ Y P E L + ++ + G VA++G +GSGKST++ + P +G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 1112 QVLLDGRDL----KLYNLRWLRNHLGLVQQ--EPIIFSTTIRENIIYARHN--ASEAEVK 1163
V + R + K L+ LR +G+V Q E +F T+ ++I + N SE + K
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
+ AR + LP +L+ GQ +R+AIA V+ +L+LDE ++ +
Sbjct: 123 QKAREMIE---LVGLPEELLAR---SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 1224 ESESSRVVQEALDTLIM-GNKTTILIAHR---AAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
+ + + + E L TT+L+ H AA R+ D IVV++ G + +GT +
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAA--RYADQIVVMHKGTVFLQGTPREIF 234
Query: 1280 AK 1281
A
Sbjct: 235 AD 236
|
Length = 290 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 5e-17
Identities = 62/211 (29%), Positives = 102/211 (48%), Gaps = 14/211 (6%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
VL N S K+ GQ +AV G +GSGKS+++ +I +P G++ GR
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ 488
Query: 1131 HLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRG 1190
+ Q I TI++NII+ + E + I+ P T +G G
Sbjct: 489 -ISFSPQTSWIMPGTIKDNIIFGL-SYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 1191 VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250
+ L+ GQ+ RI++AR V K+A + LLD + ++ + + + E+ +M NKT IL+
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 1251 RAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
+ ++ D I++L+ G GT L AK
Sbjct: 607 KLEHLKKADKILLLHEGVCYFYGTFSELQAK 637
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 5e-17
Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 25/211 (11%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
VL + SL V G+ +G +G+GK+T + +I P +G++ DG+ +
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALR 72
Query: 1131 HLGLVQQEPIIF-STTIRENIIYAR--HNASEAEVKEAARIANAHHFISSLPHGYDTHVG 1187
+G + + P + + T REN+ + + E +
Sbjct: 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD---------SAKKK 123
Query: 1188 MRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK---T 1244
++G L G KQR+ IA +L N +L+LDE ++ ++ + + ++E LI+ +
Sbjct: 124 VKGFSL--GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE----LILSLRDQGI 177
Query: 1245 TILIA-HRAAMMRHV-DNIVVLNGGRIVEEG 1273
T+LI+ H + ++ V D I ++N G+++EEG
Sbjct: 178 TVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 85.8 bits (212), Expect = 5e-17
Identities = 95/434 (21%), Positives = 162/434 (37%), Gaps = 63/434 (14%)
Query: 876 LALVALATLPILSLSAIAQKLWLAG----FSRGIQKMHRKASLVLEDAVRNIYTVVAFCA 931
+A +A ++P+ +++ A + A F G + H A+ EDA +AF A
Sbjct: 144 IAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFH--AARDEEDAFNEHTHAIAFGA 201
Query: 932 GNKVMELYRLQLKKIFTKSFLHG-----------------MAIGFAFGFSQFLLFACNAL 974
L++ I SF HG + A F Q L F
Sbjct: 202 K-------ELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGC 254
Query: 975 LLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRV 1034
L+ +D + + L P + + + + + + +R
Sbjct: 255 ALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERF 311
Query: 1035 PKIDP-------DDSSAVKPPNVYGSIELKNVDFCYPS--RPEVLVLSNFSLKVNGGQTV 1085
+ +P D+ + SIELK+V + E L L++ G V
Sbjct: 312 NEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIV 371
Query: 1086 AVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTT 1145
+VG +G GKST+ L Y P G++LLDG + + R+ +FS
Sbjct: 372 FIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD----------LFSAI 421
Query: 1146 IRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRG------VDLTPGQKQ 1199
+ ++ + E A + NA ++ L V + L+ GQ++
Sbjct: 422 FADFHLFDD--LIGPDEGEHASLDNAQQYLQRL--EIADKVKIEDGGFSTTTALSTGQQK 477
Query: 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVV-QEALDTLIMGNKTTILIAHRAAMMRHV 1258
R+A+ L++ PILL DE ++ + R +E L L KT I+I+H
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA 537
Query: 1259 DNIVVLNGGRIVEE 1272
D I+ L G IV++
Sbjct: 538 DQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 5e-17
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 20/217 (9%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI----KNLKLEWLRSQI 387
T+P + A+ GR+GSGK+++I L+ P GE++L+G + K + L + +I
Sbjct: 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77
Query: 388 GLVTQEPALLS-LSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443
G V QE L LS+R N+ YG + +I I G +GR
Sbjct: 78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL---------GIGHLLGRL 128
Query: 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIII 501
L+ +K +++I RA+L +P +LL+DE LD + + L+ L G + +
Sbjct: 129 PGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYV 188
Query: 502 ARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATGDL 537
+ L + R AD + V+++GR+ G E+ A+ DL
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-17
Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 35/225 (15%)
Query: 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369
E ++ SY P +L V + +A+VG NG+GKS+++ + PT G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 370 LDGENIKNLKLEWLRSQIGLVTQEPALLS---LSIRDNIAYGRDATLDQI-----EEAAK 421
+ G+ ++ R +IG V Q ++ +S+RD + G + AK
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 422 IAHAHTFISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTG 475
+ A VG + LA L+ Q+ ++ +ARA++ +P +LLLDE
Sbjct: 113 VDEALER-----------VGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161
Query: 476 GLDFEAERAVQEALD-LLMLGRSTIIIARRL-SLIRNADYIAVMD 518
G+D + + + E L L G + +++ L ++ D + +++
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL-----GEVLLDGENI--KNLK 379
+ G + K AL+G +GSGKS+ + + R D G++L G +I K +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA-------TLDQI-EEAAKIAHAHTFISS 431
+ +R IG+V Q P + SI +NI + + LD+I E + K A +
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA-------A 148
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491
L + + ++ L L+ Q+ +L IARA+ + P ILL+DE LD + ++E +
Sbjct: 149 LWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE 208
Query: 492 LMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFE 524
L TIII A R S DY A G L E
Sbjct: 209 LK-KNYTIIIVTHNMQQAARAS-----DYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 7e-17
Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 21/215 (9%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN--- 1124
+ VL SL + G+ VA+VG SGSGKST++ L+ +P +G+VL +G+ L +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 1125 LRWLRN-HLGLVQQ-EPIIFSTTIRENI-----IYARHNASEAEVKEAARIANAHHFISS 1177
LRN LG + Q ++ T EN+ I + VKEA A
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLI------GKKSVKEAKERAYEMLEKVG 130
Query: 1178 LPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDT 1237
L H + R +L+ G++QR+AIAR ++ ++L DE + ++++ +++++ + +
Sbjct: 131 LEH----RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
Query: 1238 LIMGNKTTILIA-HRAAMMRHVDNIVVLNGGRIVE 1271
L T+ L+ H + + +D ++ + G++
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 8e-17
Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 22/210 (10%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
L VP VAL+G +GSGKS+++ ++ P G + L+G++ + +IG V
Sbjct: 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRKIGFVF 78
Query: 392 QEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA---- 446
Q AL L++RDNIA+G + + +A A + V GL
Sbjct: 79 QHYALFKHLTVRDNIAFG--LEIRKHPKAKIKARVEELLE--------LVQLEGLGDRYP 128
Query: 447 --LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIA 502
L+ Q+ ++++ARA+ + P +LLLDE G LD + + ++ L L + +T+ +
Sbjct: 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188
Query: 503 RRLS-LIRNADYIAVMDEGRLFEMGTHDEL 531
+ AD I VM G++ ++G+ DE+
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 9e-17
Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 47/251 (18%)
Query: 1049 NVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD- 1107
++ S+ KN++ Y S+ +L + +L + + A +G SG GKST + R D
Sbjct: 3 EIHASV--KNLNLWYGSKQ---ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDF 57
Query: 1108 ----PVAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIY-------AR 1154
V G++ +DG D+ N+ LR +G+V Q+P F +I +N+ Y A+
Sbjct: 58 VPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAK 117
Query: 1155 HNASEAEVKEAARIANAHHFISSLPHGYDTHVGM----------RGVDLTPGQKQRIAIA 1204
+ E+ E SL T VG+ +L+ GQ+QR+ IA
Sbjct: 118 NKKKLDEIVE-----------KSL-----TSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161
Query: 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVV 1263
R + +LL+DE S+++ ++ V++ + L N T I++ H + V D +
Sbjct: 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAF 220
Query: 1264 LNGGRIVEEGT 1274
GRIVE T
Sbjct: 221 FQSGRIVEYNT 231
|
Length = 251 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 9e-17
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 30/235 (12%)
Query: 1054 IELKNVDFCYPS-RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
IE+ ++ E+ +L L V G+TVA+VG SGSGKST+++++ DP +G+
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 1113 VLLDGRDLKLYN------LRWLRNHLGLV-QQEPIIFSTTIRENII-------YARHNAS 1158
V L G+ L + LR H+G V Q +I + T EN+ + ++
Sbjct: 67 VRLLGQPLHKLDEDARAALR--ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR 124
Query: 1159 EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE 1218
+ ++ P L+ G++QR+A+AR +L DE
Sbjct: 125 AGAKALLEAVGLGKR-LTHYPA-----------QLSGGEQQRVALARAFAGRPDVLFADE 172
Query: 1219 ASSSIESESSRVVQEALDTLIMGNKTT-ILIAHRAAMMRHVDNIVVLNGGRIVEE 1272
+ +++ + + + L L TT +L+ H + D + L GR+VE+
Sbjct: 173 PTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227
|
Length = 228 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 60/235 (25%), Positives = 113/235 (48%), Gaps = 14/235 (5%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE +N+ F Y E L+ V + ++++G NGSGKS+ + L++ + G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYG-RDATLDQIEEAAKIAHA 425
++DG+ + + +R +IG+V Q P + ++ D++A+G + + E ++ A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE--- 482
+ G + R L+ QK +++IA AV + P I++LDE T LD E
Sbjct: 125 LELV-----GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179
Query: 483 -RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536
+ ++ D + I I L + +D + VM G++ T EL + G+
Sbjct: 180 IKTIKGIRD--DYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN 232
|
Length = 279 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 29/187 (15%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
++ SY +P L LT+ + + V ++G +G GK++++ L+ F P+ G + L+G
Sbjct: 8 HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 373 ENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISS 431
I E ++ G+V Q ALL L++ DN+A+G L IE+A + AH ++
Sbjct: 67 RRI-----EGPGAERGVVFQNEALLPWLNVIDNVAFG--LQLRGIEKAQRREIAHQMLA- 118
Query: 432 LEKGYETQVGRAGLALTEEQKI---------KLSIARAVLLNPSILLLDEVTGGLDFEAE 482
GL E + I ++ IARA+ + P +LLLDE G LD
Sbjct: 119 ----------LVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168
Query: 483 RAVQEAL 489
+QE L
Sbjct: 169 EQMQELL 175
|
Length = 259 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 29/237 (12%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE RNV + + L L +P+ + VAL+G +GSGK++++ L+ P G +
Sbjct: 3 IEVRNVSKRF---GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG-----RDATLDQIEEAAKI 422
L GE+ ++ ++ +G V Q AL +++ DN+A+G R + E AK+
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 423 AHAHTFI--SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
+ L Y Q L+ Q+ ++++ARA+ + P +LLLDE G LD +
Sbjct: 118 HELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 481 AERAVQEALDLLM--LGRSTIII----ARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ ++ L L L +T+ + L + AD + VM++GR+ ++GT DE+
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEV---ADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 59/254 (23%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++L ++ + Y P F L V G+ VA++G SG+GKST+++LI F P +G +
Sbjct: 2 LKLTDITWLYHHLP-----MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL 56
Query: 1114 LLDGRDLKLYNLRWLRNH---------LGLVQQEPIIFS-TTIRENIIYARH-----NAS 1158
L+G+D H + ++ QE +FS T+ +NI + NA+
Sbjct: 57 TLNGQD-----------HTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA 105
Query: 1159 E-AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLD 1217
+ ++ AR ++ LP L+ GQ+QR+A+AR +++ PILLLD
Sbjct: 106 QREKLHAIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCLVREQPILLLD 154
Query: 1218 EASSSIE----SESSRVVQEALD----TLIMGNKTTILIAHRAA-MMRHVDNIVVLNGGR 1268
E S+++ E +V + TL+M ++H R +V+ GR
Sbjct: 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLM-------VSHSLEDAARIAPRSLVVADGR 207
Query: 1269 IVEEGTHDSLLAKN 1282
I +G D LL+
Sbjct: 208 IAWDGPTDELLSGK 221
|
Length = 232 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSS----IIPLMERFYDPTLGEVLLDGENIKNLKL 380
IL G LTV + A++G NGSGKS+ I+ + Y+ T GE+L DGE+I L
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK--YEVTEGEILFDGEDILELSP 75
Query: 381 -EWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGY-- 436
E R+ I L Q P + ++ D + R A + + + +
Sbjct: 76 DERARAGIFLAFQYPVEIPGVTNSD---FLRAAMNARRGARGILPEFIKELKEKAELLGL 132
Query: 437 -------ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
G +G E+K + I + +LL P + +LDE GLD +A + V E +
Sbjct: 133 DEEFLERYVNEGFSG----GEKK-RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGI 187
Query: 490 D-LLMLGRSTIII---ARRLSLIRNADYIAVMDEGR 521
+ L GR +II R L I+ D + V+ +GR
Sbjct: 188 NALREEGRGVLIITHYQRLLDYIK-PDKVHVLYDGR 222
|
Length = 251 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 28/222 (12%)
Query: 1064 PSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY 1123
+ V + S V G+ ++G +G+GK+T + ++ +P AG +DG D+ +
Sbjct: 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV-VK 71
Query: 1124 NLRWLRNHLGLVQQEPIIFS-TTIRENIIY-------ARHNASEAEVKEAARIANAHHFI 1175
R LG V ++ T REN+ Y A ++E A +
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDEL-TARLEELADRLGMEELL 130
Query: 1176 SSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL 1235
R + G +Q++AIAR ++ + P+LLLDE ++ ++ ++R ++E +
Sbjct: 131 DR-----------RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179
Query: 1236 DTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRIVEEG 1273
L K + H M+ V D +VVL+ GR+V EG
Sbjct: 180 RQLRALGKCILFSTHI---MQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 2e-16
Identities = 59/230 (25%), Positives = 112/230 (48%), Gaps = 16/230 (6%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
IE++N Y E + N ++K+ Q A++G SG GK+T++ I R D
Sbjct: 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 1109 VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYAR--HNASEAEVKE 1164
V G++ G+D+ ++ R +G+V Q+P F +I +N+ + H +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
RI ++L + + G L+ GQ+QR+ IAR + ++LLDE +S+++
Sbjct: 121 --RIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
Query: 1225 SESSRVVQEALDTLIMGNKTTILIAHR-AAMMRHVDNIVVLNGGRIVEEG 1273
+++ +++ L+ L N T +++ H +R D I + G ++E G
Sbjct: 179 PIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (199), Expect = 2e-16
Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 10/218 (4%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-----EVLLDGENIKNLK- 379
+L + PA+ +L+G GSGK++ + + R D G +VLL G +I N +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 380 -LEWLRSQIGLVTQEPALLSLSIRDNIAYG-RDATLDQIEEAAKIAHAHTFISSLEKGYE 437
LE+ R ++G++ Q P +SI DN+ G R L +E +A A L +
Sbjct: 96 VLEF-RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVK 154
Query: 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRS 497
++ + L+ Q+ L +AR + +NP +LLLDE T LD ++E + L +
Sbjct: 155 DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT 214
Query: 498 TIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELLAT 534
II+ L+ R +D A+ +GRL E G ++L ++
Sbjct: 215 VIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-16
Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 20/237 (8%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP----LMERFYDPT 364
IE R++ S+ ++ +L G L +P AL+G +GSGKS+++ L+E + +
Sbjct: 4 IEIRDLKVSF---GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 365 L-GEVLLDGENIKNLKLEWLRSQIGLVTQEP-ALLSLSIRDNIAYGRDATLDQIEEAAKI 422
+ GEV LDG++I + + LR ++ +V Q P + +LSI +N+A G L+++ ++ K
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSKKE 118
Query: 423 AHAHTFISSLEKG-----YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
+LEK + ++ L+ Q+ +L IARA+ P +LL DE T L
Sbjct: 119 LQERVR-WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 478 DFEAERAVQEALDLLMLGRSTIIIARRL--SLIRNADYIAVMDEGRLFEMGTHDELL 532
D E A E+L L + TI++ R +DY+A + +G++ E G E+
Sbjct: 178 DPE-NTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 2e-16
Identities = 71/252 (28%), Positives = 118/252 (46%), Gaps = 29/252 (11%)
Query: 299 GNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358
G+ P+ + E + F Y L + V K+ AL+G +G GKS+ +
Sbjct: 8 GDVSPTQQKS-EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFN 63
Query: 359 RFYD-----PTLGEVLL--DGENIKNLKLE--WLRSQIGLVTQEPALLSLSIRDNIAYG- 408
R +D GE++L D NI + +++ +R +I +V Q+P SI +N+AYG
Sbjct: 64 RMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGL 123
Query: 409 ------RDATLDQ-IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461
R + L++ +E A + A +L + ++G L+ Q+ +L IARA+
Sbjct: 124 RIRGVKRRSILEERVENALRNA-------ALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176
Query: 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL-SLIRNADYIAVMDEG 520
+P ILL DE T LD A +++E + L + +I+ + R +DY A M G
Sbjct: 177 ATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236
Query: 521 RLFEMGTHDELL 532
L E G D +
Sbjct: 237 ELIEFGATDTIF 248
|
Length = 265 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-16
Identities = 59/198 (29%), Positives = 106/198 (53%), Gaps = 29/198 (14%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKLYNLR 1126
L++ SL + A++G SGSGKST++ I R D + G ++ +G ++ Y+ R
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI--YSPR 78
Query: 1127 W----LRNHLGLVQQEPIIFSTTIRENIIYA--------RHNASEAEVKEAARIANAHHF 1174
LR +G+V Q+P F +I EN++Y + EA V+++ + A+
Sbjct: 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA-VEKSLKGASIWDE 137
Query: 1175 ISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEA 1234
+ H D+ +G+ G GQ+QR+ IARV+ + I+LLDE +S+++ S+ ++E
Sbjct: 138 VKDRLH--DSALGLSG-----GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET 190
Query: 1235 LDTLIMGNKTTILIAHRA 1252
L L + + T+L+ R+
Sbjct: 191 L--LGLKDDYTMLLVTRS 206
|
Length = 252 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 3e-16
Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 16/195 (8%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD--P--- 1108
I+++N++F Y + L N +L + Q A +G SG GKST++ R Y+ P
Sbjct: 14 IQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70
Query: 1109 VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA-RH--NASEAEVK 1163
G++LLDG ++ ++ LR +G+V Q+P F +I +NI + R S AE+
Sbjct: 71 AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMD 130
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
E R+ A ++L + + G L+ GQ+QR+ IAR + +LLLDE S++
Sbjct: 131 E--RVEWALT-KAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSAL 187
Query: 1224 ESESSRVVQEALDTL 1238
+ S+ ++E + L
Sbjct: 188 DPISTGRIEELITEL 202
|
Length = 260 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 3e-16
Identities = 61/242 (25%), Positives = 116/242 (47%), Gaps = 31/242 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
IE ++++ Y + L + S+ + Q A++G SG GKST + I R D
Sbjct: 40 IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96
Query: 1109 VAGQVLLDGRDLKLYNLR--WLRNHLGLVQQEPIIFSTTIRENIIYA-----RHNASEAE 1161
V G++ G+++ ++ LR +G+V Q+P F +I +N+ Y +
Sbjct: 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
V+E+ R A +L + G+DL+ GQ+QR+ IAR + + ++L+DE +S
Sbjct: 157 VEESLRRA-------ALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPAS 209
Query: 1222 SIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNI-----VVLNGGRIVEEGTHD 1276
+++ ++ +++ ++ L T +++ H M+ I V L GG +VE D
Sbjct: 210 ALDPVATSKIEDLIEELAE-EYTVVIVTHN---MQQAARISDKTAVFLTGGELVEFDDTD 265
Query: 1277 SL 1278
+
Sbjct: 266 KI 267
|
Length = 285 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-16
Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 25/238 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
++ + ++Y L G + + + A++G NG+GKS++ + P+ G +
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 369 LLDGENIKNLK--LEWLRSQIGLVTQEP--ALLSLSIRDNIAYG---RDATLDQIEEAAK 421
L DG+ I + L LR +G+V Q+P L S S+ ++++G D++ +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
A T I L+ + L+ QK +++IA +++ P +L+LDE T GLD
Sbjct: 124 NALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD--- 173
Query: 482 ERAVQEALDLLM-----LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533
V E + LL+ LG + II + ++ D + VM EGR+ G E+ A
Sbjct: 174 PMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231
|
Length = 283 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 3e-16
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 1053 SIELKNVDFCYPS-RP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA 1110
I L+NV + Y + P E L + +L + G A +G +GSGKSTI+ L+ + P
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 1111 GQVLLDGRDL----KLYNLRWLRNHLGLVQQ--EPIIFSTTIRENIIYARHN--ASEAEV 1162
G V +D + K +++ +R +GLV Q E +F T+ +++ + N S+ E
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
+ AR A IS ++ +L+ GQ +R+AIA ++ IL+LDE ++
Sbjct: 122 EALAREKLALVGIS------ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 1223 IESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRIVEEGT 1274
++ + + + L T +L+ H +M V D + VL G++V G
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTH---LMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 3e-16
Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 23/210 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA--- 1110
I+ ++V+F Y + L S+++ VA +G SG GKST + L R D +
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 1111 --GQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA-RHNASEAEVKEA 1165
G++ +DGR++ K + LR ++G+V Q P F +I EN+ Y R N VK+
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNG----VKDN 116
Query: 1166 ARIANAHHFISSLPHG--YD---THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
A I +L +D + L+ GQ+QR+ IAR + + +LL+DE +
Sbjct: 117 AFI--RQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174
Query: 1221 SSIESESSRVVQEALDTLIMGNKTTILIAH 1250
S+++ S+ V+E + L + T +++ H
Sbjct: 175 SALDPISTAKVEELIHEL-KKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-16
Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 21/236 (8%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
SI+L ++ Y + L + +L G+T+ ++G SG+GKS+++ ++ P +G
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 1113 VLLDGRDLKLYN------LRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNA---SEAEV 1162
+ + G +R LR ++G+V QQ + T++EN+I A S+ +
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQA 118
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
A + Y H L+ GQ+QR+AIAR ++ +LL DE +++
Sbjct: 119 LARAEKLLKRLRLKPYADRYPLH-------LSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
Query: 1223 IESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVV-LNGGRIVEEGTHDS 1277
++ E + + + L T +++ H + R + VV + G IVE+G
Sbjct: 172 LDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
|
Length = 242 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-16
Identities = 66/224 (29%), Positives = 103/224 (45%), Gaps = 26/224 (11%)
Query: 1072 LSNFSLKVN----GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL----KLY 1123
L +FSL + G A+ G SGSGK+T+I LI P G+++L+GR L K
Sbjct: 9 LGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 1124 NLRWLRNHLGLVQQEPIIFS-TTIRENIIYA--RHNASEAEVKEAARIA--NAHHFISSL 1178
L + +G V QE +F ++R N+ Y R SE + I H + L
Sbjct: 69 FLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL 128
Query: 1179 PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTL 1238
P L+ G+KQR+AI R +L + +LL+DE ++++ + L+ L
Sbjct: 129 PG-----------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERL 177
Query: 1239 IMGNKTTIL-IAHR-AAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
IL ++H ++R D +VVL GR+ G + A
Sbjct: 178 HAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 5e-16
Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 32/234 (13%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE +NV + IL V + A+VG NG+GK++++ L+ + P+ G+V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 369 LLDGENIKNLKLEW-LRSQIGLVTQEPALL-----SLSIRDNIA---------YGRDATL 413
L G + + LR +IGLV+ L ++RD + Y D T
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVS--SELHERFRVRETVRDVVLSGFFASIGIYQEDLTA 146
Query: 414 DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEV 473
+ + A + ++ + + L++ ++ ++ IARA++ +P +L+LDE
Sbjct: 147 EDLAAAQWLLELLGAKHLADRPFGS--------LSQGEQRRVLIARALVKDPELLILDEP 198
Query: 474 TGGLDFEA-ERAVQEALDLLML--GRSTIIIARRLS-LIRNADYIAVMDEGRLF 523
GLD A E+ + +L + + + + + ++ EG +
Sbjct: 199 AQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 40/252 (15%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV-- 1109
G I +K++D Y + L +L + Q A++G SG GKST + + R D +
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 1110 ---AGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA------RHNAS 1158
G+VLLDG+D+ ++ LR +G+V Q+P F +I +N+ Y +
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 1159 -----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213
E +K AA + + +G+ G GQ+QR+ IAR + +
Sbjct: 119 LDEIVEKSLKGAALWDEVKDRLKK------SALGLSG-----GQQQRLCIARALAVEPEV 167
Query: 1214 LLLDEASSSIESESSRVVQEALDTLIMGNKTTILIA----HRAAMMRHVDNIVVLNGGRI 1269
LL+DE +S+++ S+ ++E + L TI+I +A+ R D G I
Sbjct: 168 LLMDEPTSALDPISTLKIEELIQEL--KKDYTIVIVTHNMQQAS--RISDKTAFFLNGEI 223
Query: 1270 VEEGTHDSLLAK 1281
VE G L
Sbjct: 224 VEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 16/231 (6%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IELKNV + +L + S +VN G+ A+VG +G+GK+T++SL+ + P +G V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1114 LLDGRDLKLYNLRW-LRNHLGLV---QQEPIIFSTTIRENIIYARHNASE--AEVKEAAR 1167
L GR + LR +GLV E T+R+ ++ + E A
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 1168 IANAHHFISSLPHGYDTHVGMRGV-DLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+A A + L H+ R L+ G+++R+ IAR ++K+ +L+LDE + ++
Sbjct: 149 LAAAQWLLELL---GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 1227 SSRVVQEALDTLIMGN--KTTILIAHRAA-MMRHVDNIVVLNGGRIVEEGT 1274
+ + L+ L + + H A + + ++L G +V +G
Sbjct: 206 AREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 6e-16
Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 41/254 (16%)
Query: 1046 KPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF 1105
+ + L+NV F P R +L SL G+ ++G +GSGKST++ ++ R
Sbjct: 4 YTNHSDTTFALRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60
Query: 1106 YDPVAGQVLLDGRDLKLYNLR-WLRNHLGLVQQEPIIFSTTIRENIIYAR---HNA---- 1157
P G++LLD + L+ ++ + + R L QQ P T+RE + R H A
Sbjct: 61 QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRF 120
Query: 1158 ---SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVD-LTPGQKQRIAIARVVLKNAPI 1213
+V+EA + L VD L+ G++QR IA +V +++
Sbjct: 121 GAADREKVEEAISLVGLKPLAHRL------------VDSLSGGERQRAWIAMLVAQDSRC 168
Query: 1214 LLLDEASSSIESESSRVVQEALDTLIMGNK-------TTILIAHRAAM-MRHVDNIVVLN 1265
LLLDE +S+++ + +D L + ++ T I + H M R+ D +V L
Sbjct: 169 LLLDEPTSALD------IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR 222
Query: 1266 GGRIVEEGTHDSLL 1279
GG ++ +GT L+
Sbjct: 223 GGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (193), Expect = 7e-16
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 9/217 (4%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF---YDP---VAGQVLLDGRDLKLYN 1124
+L + ++K+ ++G SGSGKST++ ++ R YD V G+VL G+D+ +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1125 LRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYD 1183
LR +G+V Q+P F +I +NI Y + E +E +I L
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK 1243
+ L+ GQ+QR+ IAR + +LL+DE +S I+ +S+ + E L T +
Sbjct: 145 DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI-EKLITELKNEI 203
Query: 1244 TTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLL 1279
++++H + R D + L G +VE G+ + +
Sbjct: 204 AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 7e-16
Identities = 64/234 (27%), Positives = 126/234 (53%), Gaps = 19/234 (8%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I ++NV Y ++ VL + SL + G +++G +G+GKST++S++ R +G++
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEV-KEAARIANA 1171
+DG +L + L L +++QE I S T+R+ + + R S+ + KE RI N
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 1172 HHFISSLPHGYDTHVGMRGVD-LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR- 1229
++ + + + R +D L+ GQ+QR IA V+ ++ +LLDE ++++ + S
Sbjct: 119 -----AIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQ 173
Query: 1230 ---VVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLL 1279
+++ D L KT +++ H + D+IV L G++V++G+ D ++
Sbjct: 174 IMKILRRLADEL---GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 9e-16
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 17/226 (7%)
Query: 318 YLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN 377
+ I L+ L VPA + ++G +G+GKS++I + PT G V++DG+++
Sbjct: 12 HQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71
Query: 378 LK---LEWLRSQIGLVTQEPALL-SLSIRDNIAYG---RDATLDQIEEAAKIAHAHTFIS 430
L L R QIG++ Q LL S ++ N+A + D+I+ A +
Sbjct: 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG 131
Query: 431 SLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD 490
Y + L+ QK +++IARA+ NP +LL DE T LD +++ E L
Sbjct: 132 DKHDSYPSN-------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK 184
Query: 491 LL--MLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLA 533
+ LG + ++I + ++ R D +AV+ G L E GT E+ +
Sbjct: 185 EINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 9e-16
Identities = 54/224 (24%), Positives = 109/224 (48%), Gaps = 17/224 (7%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++L+N+ Y + L SL + G ++G +G+GK+T++ ++ P +G +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIY--ARHNASEAEVKEAARIAN 1170
+DG+D+ + LR +G + QE ++ T+RE + Y EVK AR+
Sbjct: 57 RIDGQDVL-KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVK--ARVDE 113
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
++ +G L+ G ++R+ IA+ ++ + IL++DE ++ ++ E R+
Sbjct: 114 VLELVNLGDR-AKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE-ERI 167
Query: 1231 VQEALDTLIMGNKTTILIAHRAA-MMRHVDNIVVLNGGRIVEEG 1273
L + + ++ IL H + + + VLN G++V EG
Sbjct: 168 RFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 1e-15
Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 14/235 (5%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA--- 1110
IE++N++ + + +L N +L + A++G SG GKST I + R D +
Sbjct: 4 IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 1111 --GQVLLDGRDLKLYNLRW--LRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
G + LDG D+ + LR +G+V Q+P F +I +N+ Y E +
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
++L + + L+ GQ+QR+ IAR + + ++L+DE S+++
Sbjct: 121 ERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPI 180
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIV--VLNGGRIVEEGTHDSLL 1279
S+ +++ + L + T +++ H V LN G I+E G D +
Sbjct: 181 STTKIEDLIHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLN-GEIIESGLTDQIF 233
|
Length = 250 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 15/170 (8%)
Query: 1066 RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL 1125
R ++ S S + G+ + + G +GSGK+T++ LI P AG + LDG D+ ++
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYAR--HNASEAEVKEAARIANAHHFISSLPHGYD 1183
++LG + + + T+ EN+ + E ++ A ++ LP GY
Sbjct: 72 AEACHYLG--HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGY- 127
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
L+ GQK+R+A+AR+++ N PI +LDE ++++++ + + E
Sbjct: 128 ---------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 22/213 (10%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
L + SL V G+ V ++G SG GK+T++ +I AG + GRD+ L +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQKR 76
Query: 1131 HLGLVQQEPIIF-STTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMR 1189
G+V Q +F + T+ +NI Y N + A R+A + LP + G
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-GLPGSERKYPG-- 133
Query: 1190 GVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-----NKT 1244
L+ GQ+QR+A+AR + + +LLLDE S++++ V+E L T I T
Sbjct: 134 --QLSGGQQQRVALARALATSPGLLLLDEPLSALDAR----VREHLRTEIRQLQRRLGVT 187
Query: 1245 TILIAH---RAAMMRHVDNIVVLNGGRIVEEGT 1274
TI++ H A M D IVV+N G I + GT
Sbjct: 188 TIMVTHDQEEALSM--ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 66/250 (26%), Positives = 116/250 (46%), Gaps = 28/250 (11%)
Query: 1032 DRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVS 1091
D +P+ A+ P +E++N+ + + V + SL + G+ A++G S
Sbjct: 3 DAIPRPQAKTRKALTP-----LLEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGAS 54
Query: 1092 GSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENII 1151
G GKST++ ++ F P AGQ++LDG DL + R + Q + T+ +NI
Sbjct: 55 GCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-PYQRPINMMFQSYALFPHMTVEQNIA 113
Query: 1152 YA--RHNASEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205
+ + +AE V E + + F PH L+ GQ+QR+A+AR
Sbjct: 114 FGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-----------QLSGGQRQRVALAR 162
Query: 1206 VVLKNAPILLLDEASSSIESE-SSRVVQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVV 1263
+ K +LLLDE +++ + R+ E +D L T +++ H + M I +
Sbjct: 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAI 222
Query: 1264 LNGGRIVEEG 1273
+N G+ V+ G
Sbjct: 223 MNRGKFVQIG 232
|
Length = 377 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 10/198 (5%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS- 398
L+G NG+GK++++ ++ P G+V +DG + ++R +IG++ E L +
Sbjct: 31 TGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYAR 89
Query: 399 LSIRDNIAY-GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457
L+ R+N+ Y R L + E A+IA L+ E R G + K K++I
Sbjct: 90 LTARENLKYFARLNGLSRKEIKARIAE---LSKRLQLL-EYLDRRVG-EFSTGMKQKVAI 144
Query: 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLLMLGRSTIIIARRLSLIRN-ADYIA 515
ARA++ +PSIL+LDE T GLD R + + L GR+ I + + + D +
Sbjct: 145 ARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204
Query: 516 VMDEGRLFEMGTHDELLA 533
V+ +G + G+ + L A
Sbjct: 205 VLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 18/234 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E R++ +SY E L G + VAL+G NG+GKS++ PT GEV
Sbjct: 2 LETRDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 369 LLDGENIK--NLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYG---RDATLDQIEEAAK 421
L+ GE IK L +R +G+V Q P L + ++ +++A+G + +++E+ K
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
A + E + L+ QK +++IA + + P I++LDE T GLD
Sbjct: 120 EALKAVGMEGFEN-------KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG 172
Query: 482 ERAVQEAL-DLLMLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLA 533
+ + L DL G + II + L+ AD + VM +G++ + GT E+ +
Sbjct: 173 ASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226
|
Length = 275 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 62/196 (31%), Positives = 98/196 (50%), Gaps = 13/196 (6%)
Query: 1086 AVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQE 1138
A++G SGSGKST + + R D V GQ+L G D+ K N+ +R H+G+V Q
Sbjct: 50 ALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQR 109
Query: 1139 PIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198
P F+ +I ENI +A A + K I ++L + + L+ GQ+
Sbjct: 110 PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ 169
Query: 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH---RAAMM 1255
QR+ IAR + ILL+DE +S+++ S+ ++E + L N T I++ H +AA
Sbjct: 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAA-- 226
Query: 1256 RHVDNIVVLNGGRIVE 1271
R D G ++E
Sbjct: 227 RASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 2e-15
Identities = 64/217 (29%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIIS----LIERFYDP-VAGQVLLDGRDLKL 1122
+V VL +L++ A++G SGSGKST++ LIE + + V+G+V LDG+D+
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 1123 YNLRWLRNHLGLVQQEP-IIFSTTIRENIIYA----RHNASEAEVKEAARIANAHHFISS 1177
++ LR + +V Q P I + +I EN+ R S+ E++E R A +
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEK---AQ 131
Query: 1178 LPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDT 1237
L + L+ GQ+QR+ IAR + +LL DE +++++ E++ + E+L
Sbjct: 132 LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI-ESLFL 190
Query: 1238 LIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
+ + T +L+ H + D + L G+IVE G
Sbjct: 191 ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (190), Expect = 2e-15
Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 341 ALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENI--KNLKLEWLRSQIGLVTQE 393
AL+G +G GKS+ + + R D G V+ +G+NI N + LR +IG+V Q
Sbjct: 37 ALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQT 96
Query: 394 PALLSLSIRDNIAYG------RDA-TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446
P +SI DNI+YG +D LD+I E + S+L + ++ L+
Sbjct: 97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKK------SALWNEVKDKLNTNALS 150
Query: 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLS 506
L+ Q+ +L IAR + + P+++L+DE T LD + ++E + L + II+ +
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQ 210
Query: 507 LI-RNADYIAVMDEGRLFEMGTHDELL 532
R +D A G + E + DEL
Sbjct: 211 QAGRISDRTAFFLNGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 2e-15
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 21/212 (9%)
Query: 336 AKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENI--KNLKLEWLRSQIG 388
+K A++G +G GKS+ + + R D P T G ++ DGE+I K LR +IG
Sbjct: 64 SKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIG 123
Query: 389 LVTQEPALLSLSIRDNIAYG-RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447
+V Q+P SI DNIAYG R ++ ++ +I ++L ++ + L L
Sbjct: 124 MVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGL 183
Query: 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII------ 501
+ Q+ +L +AR + + P ILLLDE T LD +A +++ + L G TI+I
Sbjct: 184 SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-GSYTIMIVTHNMQ 242
Query: 502 -ARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532
A R+S DY EG L E +L
Sbjct: 243 QASRVS-----DYTMFFYEGVLVEHAPTAQLF 269
|
Length = 286 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 29/235 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
LK + E L + S ++ G+ V ++G +G+GKST++ LI Y P +G+V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENII-YAR-HNASEAEVKEAAR--IA 1169
+ G+ L L G + T RENI + E+ E I
Sbjct: 85 KVTGKVAPLIEL-----GAGFDPE------LTGRENIYLRGLILGLTRKEIDEKVDEIIE 133
Query: 1170 NAH--HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESES 1227
A FI Y + GM R+A + ILLLDE + ++
Sbjct: 134 FAELGDFIDQPVKTYSS--GM---------YARLAFSVATHVEPDILLLDEVLAVGDAAF 182
Query: 1228 SRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAK 1281
E L+ L+ NKT +L++H ++ D + L G+I EG+ + ++
Sbjct: 183 QEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
|
Length = 249 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 28/203 (13%)
Query: 313 NVYF-SYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--PTL---G 366
NVY+ S+L+ + +L +P + A +G +G GKS+I+ R D P G
Sbjct: 17 NVYYGSFLA------VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEG 70
Query: 367 EVLLDGENIKNLKLE--WLRSQIGLVTQEPALLSLSIRDNIAYG-----RDATLDQ-IEE 418
+V G+N+ ++ +R +IG+V Q+P SI DNIAYG +D+ +E
Sbjct: 71 KVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVER 130
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
+ + A +L + ++ ++GL+L+ Q+ +L IARA+ + P ++L+DE LD
Sbjct: 131 SLRQA-------ALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
Query: 479 FEAERAVQEALDLLMLGRSTIII 501
+ ++E + L + TIII
Sbjct: 184 PISTLRIEELMHELK-EQYTIII 205
|
Length = 264 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 2e-15
Identities = 67/250 (26%), Positives = 120/250 (48%), Gaps = 15/250 (6%)
Query: 304 SVHGNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361
+I NV ++Y + E L+ LT K ++G GSGKS++I L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61
Query: 362 DPTLGEVLLDG----ENIKNLK-LEWLRSQIGLVTQEP--ALLSLSIRDNIAYGRDATLD 414
G+ ++ N+K +K ++ LR +IGLV Q P L +I +IA+G +
Sbjct: 62 ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 415 QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474
+EA K + L + Y V R+ L+ QK ++++A + ++ + L+LDE T
Sbjct: 122 NKQEAYKKVPELLKLVQLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 475 GGLDFEAERAVQEALDLL--MLGRSTIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDEL 531
GGLD + E + L + I++ + ++R AD + VM EG++ +G+ E+
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 532 LATGDLYAEL 541
+ +L ++
Sbjct: 239 FSNQELLTKI 248
|
Length = 289 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 3e-15
Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 28/273 (10%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
++VP K ++G GSGKS+++ + ++ + G V W I V
Sbjct: 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAERSIAYVP 727
Query: 392 QEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451
Q+ +++ ++R NI + + ++ +A +++ ++ L G ET++G G+ L+ Q
Sbjct: 728 QQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQ 787
Query: 452 KIKLSIARAVLLNPSILLLDEVTGGLDFE-AERAVQEALDLLMLGRSTIIIARRLSLIRN 510
K ++S+ARAV N + LLD+ LD ER V+E + G++ ++ ++ ++
Sbjct: 788 KARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPR 847
Query: 511 ADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKD 570
ADY+ + +GR+ G+ + + T LYA L AA+L + + D
Sbjct: 848 ADYVVALGDGRVEFSGSSADFMRT-SLYATL-----AAELKENKDSKEG--------DAD 893
Query: 571 SSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGA 603
+ + P + P ++ G DGA
Sbjct: 894 AEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGA 926
|
Length = 1560 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-15
Identities = 60/233 (25%), Positives = 113/233 (48%), Gaps = 33/233 (14%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E R + S+ + ++S LT+ + + L+G +G GK++++ L+ F P G +
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG-------RDATLDQIEEAA 420
+LDG++I ++ E + V Q AL +++ +N+A+G ++ EA
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
++ F R L+ Q+ +++IARAV+ P +LLLDE LD++
Sbjct: 130 RMVQLEEFA-----------QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 481 AERAVQEALDLLM--LGRSTIIIA----RRLSLIRNADYIAVMDEGRLFEMGT 527
+ +Q L L LG + + + L++ +D I VM +GR+ + GT
Sbjct: 179 LRKQMQNELKALQRKLGITFVFVTHDQEEALTM---SDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 3e-15
Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 12/234 (5%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
+E KN++ Y E L++ +L + + A++G SG GKST + + R D
Sbjct: 5 MESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 1109 VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
+ G+VLLDG+++ K ++ LR +G+V Q+P F +I +N+ Y + KE
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+I ++L + + L+ GQ+QR+ IAR + ++L+DE +S+++
Sbjct: 122 KIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPI 181
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLL 1279
S+ +++ + L T +++ H V D G ++E + +
Sbjct: 182 STLKIEDLMVEL-KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 3e-15
Identities = 104/497 (20%), Positives = 194/497 (39%), Gaps = 63/497 (12%)
Query: 798 IMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQ 857
+G+ ++R +L + E + L L +D + AFS
Sbjct: 74 TLGQHFIYKLRSEFIKKILDTPLERI--ERLGSARLLAGLTSDVRNISFAFS-------- 123
Query: 858 DSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAG----FSRGIQKMHRKAS 913
+ V +L A +A + + L+ + + + G +R + M A+
Sbjct: 124 ---RLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHM--AAA 178
Query: 914 LVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFT-------KSFLHGMAIGFAFG---- 962
ED ++N Y + G K + L R + + + + + H + F
Sbjct: 179 RETEDKLQNDYQTIL--EGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAV 236
Query: 963 -FSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRR 1021
+S +L L+ W G+ A +V F L+ G+ P +L +
Sbjct: 237 NWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQ 293
Query: 1022 KSLISVFEIIDRVPKIDPDDSSA----VKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSL 1077
+ +++ K++ A + + ++EL+NV F Y + +L
Sbjct: 294 VAF-------NKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQ--DNAFHVGPINL 344
Query: 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQ 1137
+ G+ V ++G +GSGKST+ L+ Y P +G++LLDG+ + L R V
Sbjct: 345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFS 404
Query: 1138 EPIIFSTTIRENIIYARHNASEAEV-KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196
+ +F + AS + K R+ AH +SL G ++ + L+ G
Sbjct: 405 DYHLFDQLLG-----PEGKASPQLIEKWLQRLELAH--KTSLNDGRFSN-----LKLSTG 452
Query: 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVV-QEALDTLIMGNKTTILIAHRAAMM 1255
QK+R+A+ +L+ IL+LDE ++ + R Q L L KT I+H
Sbjct: 453 QKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512
Query: 1256 RHVDNIVVLNGGRIVEE 1272
H D ++ + G++ E
Sbjct: 513 IHADRLLEMRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 44/239 (18%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLI---ERFYDPVAGQVLLDGRDL---- 1120
+ VL + V G+ VA++G SGSGKSTI+ ++ E + GQ+ ++G L
Sbjct: 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMP 68
Query: 1121 ----KLY-----NLRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIAN 1170
L +LR +RN +G+V Q +F T+ +N+ A V AR
Sbjct: 69 GRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA-----PVLVLGMARAEA 123
Query: 1171 AHHFISSLPHGYDTHVGMRG------VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
+ L VG+ L+ GQ+QR+AIAR + ++L DE +S+++
Sbjct: 124 EKRAMELL-----DMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178
Query: 1225 SESSRVVQEALDTL----IMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSL 1278
E +V E L+ + + T +L+ H R D + + GRIVE+G D +
Sbjct: 179 PE---LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (187), Expect = 4e-15
Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 10/235 (4%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG-- 1111
I+++ V+F Y VL N ++ Q A++G SG GKST++ + R D V+G
Sbjct: 5 IKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 1112 ---QVLLDGRDLKLYNLRW--LRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
VLLD ++ NL LR +G+V Q+P F +I +N+ +
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+ ++L ++ G+ L+ GQ+QR+ IARV+ ++L+DE S+++
Sbjct: 122 EVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
S+ ++E + L I+ + R D L G +VE G + ++
Sbjct: 182 STMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236
|
Length = 251 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 4e-15
Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 42/251 (16%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
+E + + F Y + L + SL+ Q A++G SG GKST + + R D
Sbjct: 7 MEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 1109 VAGQVLLDGRDLKLYNLRW----LRNHLGLVQQEPIIFSTTIRENIIYA-RHNASEAEVK 1163
V G++LLDG ++ Y+ LR +G+V Q+P F +I EN+ Y R N VK
Sbjct: 64 VEGEILLDGENI--YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNG----VK 117
Query: 1164 EAARIANAHHFISSLPHG----------YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213
+ A +A SL H +++ +G+ G GQ+QR+ IAR + +
Sbjct: 118 DKAYLAE--RVERSLRHAALWDEVKDRLHESALGLSG-----GQQQRLCIARALAVEPEV 170
Query: 1214 LLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH---RAAMMRHVDNIVVLNGGRIV 1270
LL+DE +S+++ +++ ++E + L T I++ H +AA R D G+++
Sbjct: 171 LLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAA--RVSDVTAFFYMGKLI 227
Query: 1271 EEGTHDSLLAK 1281
E G + + +
Sbjct: 228 EVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 35/237 (14%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+ + E L + + V ++G NG+GKS+++ L+ Y PT G+
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 368 VLLDGENIKNLKLEWLRSQIGL-VTQEPALLSLSIRDNI-------AYGRDATLDQIEEA 419
V + G K+ L I L +P L+ R+NI R ++++E
Sbjct: 84 VKVTG------KVAPL---IELGAGFDP---ELTGRENIYLRGLILGLTRKEIDEKVDEI 131
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD- 478
+ A FI K Y + + A LA S+A V P ILLLDEV D
Sbjct: 132 IEFAELGDFIDQPVKTYSSGM-YARLA--------FSVATHV--EPDILLLDEVLAVGDA 180
Query: 479 -FEAERAVQEALDLLMLGRSTIIIARRLSLIRNA-DYIAVMDEGRLFEMGTHDELLA 533
F E+ ++ +L+ ++ ++++ L I+ D ++ G++ G+ +E++
Sbjct: 181 AF-QEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 4e-15
Identities = 61/228 (26%), Positives = 97/228 (42%), Gaps = 44/228 (19%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
+L + SL + G+ VA++G +G+GKST++ + P +G+V L+GR L ++ L
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76
Query: 1131 HLG-LVQQEPIIFSTTIRENIIYAR--HNASEAEVKEAARIANAHHFISSLPHGYDTHVG 1187
L Q + F T+ E + R H S AE A
Sbjct: 77 RRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA------------------ 118
Query: 1188 MRGVDLTP-----------GQKQRIAIARV------VLKNAPILLLDEASSSIESESSRV 1230
+ VDL G++QR+ +ARV LLLDE +S+++
Sbjct: 119 LAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 1231 VQEALDTLIMGNKTTIL-IAHR---AAMMRHVDNIVVLNGGRIVEEGT 1274
V L ++ + H AA R+ D IV+L+ GR+V +GT
Sbjct: 179 VLRLARQLAHERGLAVIVVLHDLNLAA--RYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-15
Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 23/169 (13%)
Query: 1065 SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN 1124
R + S S + G+ + V G +GSGK+T++ ++ P+AG+VLL+G L
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDT 1184
R L L I + ++ EN+ + + S+ +V+EA
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEAL-----------------A 111
Query: 1185 HVGMRGVD------LTPGQKQRIAIARVVLKNAPILLLDEASSSIESES 1227
VG+ G + L+ GQ++R+A+AR++L P+ +LDE +++++
Sbjct: 112 RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 4e-15
Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 31/246 (12%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----P 363
I+ N+ F Y ++ IL G + + K A++G +G GKS+ + + R +
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 364 TLGEVLLDGENI--KNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG-------RDATLD 414
G V +NI + + L LR Q+ +V +P L +S+ DN+AYG +D
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 415 QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVT 474
I E+A + L + ++ ++ L L+ Q+ +L IARA+ + P +LL+DE
Sbjct: 125 DIVESALKD------ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 475 GGLDFEAERAVQEALDLLMLGR--STIIIARRLSLI-RNADYIAVMDE-----GRLFEMG 526
GLD A V+ + L L + +I++ L + R +D+ A G+L E G
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238
Query: 527 THDELL 532
++
Sbjct: 239 LTKKIF 244
|
Length = 261 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 4e-15
Identities = 64/213 (30%), Positives = 96/213 (45%), Gaps = 17/213 (7%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN---LRW 1127
VL+N SL + G+TV ++G SG GKST+ L+ P G V G+DL + R
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 1128 LRNHLGLV-QQEPIIFS--TTIRENIIYA-RHNASEAEVKEAARIANAHHFIS--SLPHG 1181
R + LV Q P + T+R+ I RH S + E+ + A + L
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS---LDESEQKARIAELLDMVGLR-- 140
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
L+ GQ QRI IAR + +++LDEA S+++ V+ E L L
Sbjct: 141 -SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199
Query: 1242 NKTT-ILIAHR-AAMMRHVDNIVVLNGGRIVEE 1272
T + I H + + V++ G+IVEE
Sbjct: 200 FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 5e-15
Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 14/231 (6%)
Query: 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I NV +SY P+ P L L + + + ++G+NGSGKS++ + P G+
Sbjct: 2 IRLENVSYSY---PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK 58
Query: 368 VLLDGENIKNL-KLEWLRSQIGLVTQEP--ALLSLSIRDNIAYG-RDATLDQIEEAAKIA 423
VL+ G + + KL+ +R +G+V Q P + ++ +++A+G + L IE ++
Sbjct: 59 VLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD 118
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
A E G E R+ L+ Q +++A + + P L+ DEVT LD ++
Sbjct: 119 RALA-----EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 484 AVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA 533
AV E + L G++ + I L + +AD I VMD G++ G + +L+
Sbjct: 174 AVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 15/214 (7%)
Query: 1074 NFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP----VAGQVLLDGRDLKLYNLRWLR 1129
N SLK G+ +A+VG SGSGKS I P +G++LLDGR L ++R
Sbjct: 6 NLSLKR--GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR--G 61
Query: 1130 NHLGLVQQEPIIFST---TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHV 1186
H+ + Q P T+ + I + + + A I A LP + +
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALE-AVGLPDP-EEVL 119
Query: 1187 GMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTI 1246
L+ G QR+ IA +L P L+ DE ++ ++ + V + L L T I
Sbjct: 120 KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGI 179
Query: 1247 L-IAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSL 1278
L I H ++ R D + V++ GRIVE GT +
Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 50/215 (23%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSS----IIPLMERFYDPTLGEVLLDGENIKNL 378
IL G LT+ + AL+G NGSGKS+ I+ + Y+ T GE+L GE+I +L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK--YEVTEGEILFKGEDITDL 69
Query: 379 KLEWLRSQ--IGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKG 435
E R++ I L Q P + + D F+ + +G
Sbjct: 70 PPE-ERARLGIFLAFQYPPEIPGVKNAD------------------------FLRYVNEG 104
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD-LLML 494
+ G E+K + I + +LL P + +LDE GLD +A R V E ++ L
Sbjct: 105 FS-----GG-----EKK-RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 495 GRSTIII---ARRLSLIRNADYIAVMDEGRLFEMG 526
G+S +II R L I+ D + V+ +GR+ + G
Sbjct: 154 GKSVLIITHYQRLLDYIK-PDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 6e-15
Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 36/234 (15%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL-----GEVLLDGENI--KNLK 379
L G + +P K AL+G +G GKS+ + + R D G V LDG++I +
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYG--------------------RDATLDQIEEA 419
L LR ++G+V Q P SIR+NI+YG +DA + +E +
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
+ A +L ++ L L+ Q+ +L IAR + ++P ++L+DE LD
Sbjct: 181 LRQA-------ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 480 EAERAVQEALDLLMLGRSTIIIARRL-SLIRNADYIAV-MDEGRLFEMGTHDEL 531
A +++ ++ L + +++ + R +D AV + G L E D++
Sbjct: 234 IATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKI 287
|
Length = 305 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-15
Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 29/240 (12%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
SI+L ++ Y + L + +L G+T+ ++G SG+GKS+++ ++ P +G
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 1113 VLLDGRDLKLYN------LRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNA---SEAEV 1162
+ + G +R LR ++G+V QQ + T+++N+I A S+ +
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA 118
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
A + + H L+ GQ+QR+AIAR ++ +LL DE +++
Sbjct: 119 LARAEKLLERLRLKPYADRFPLH-------LSGGQQQRVAIARALMMEPQVLLFDEPTAA 171
Query: 1223 IESE-SSRVV---QEALDTLIMGNKTTILIAHRAAMMRHVDNIVV-LNGGRIVEEGTHDS 1277
++ E ++++V +E +T I T +++ H + R + VV + G IVE+G
Sbjct: 172 LDPEITAQIVSIIRELAETGI----TQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
|
Length = 242 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 8e-15
Identities = 51/199 (25%), Positives = 93/199 (46%), Gaps = 11/199 (5%)
Query: 1082 GQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQE-PI 1140
G ++G +GSGKST++ L+ P AG V L G DL + R + LV+Q+
Sbjct: 27 GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDT 86
Query: 1141 IFSTTIRENIIYAR---HNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVD-LTPG 1196
T+R+ + R + + A + + + L +H+ R + L+ G
Sbjct: 87 AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL-----SHLADRDMSTLSGG 141
Query: 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAM-M 1255
++QR+ +AR + + +LLLDE ++ ++ + + L T + H +
Sbjct: 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA 201
Query: 1256 RHVDNIVVLNGGRIVEEGT 1274
+ D++VVL+GGR+V G
Sbjct: 202 SYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 9e-15
Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 34/232 (14%)
Query: 285 YEMISRSSSTT-NYDGNTLPSVHGNIEFRNVYFS-YLSRPEIPILSGFYLTVPAKKAVAL 342
Y S+S S T N D + +E V++ +L+ L +L +PAKK +A
Sbjct: 3 YSSRSQSDSATINPDHSVF-----EVEGVKVFYGGFLA------LVDVHLKIPAKKIIAF 51
Query: 343 VGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNLKLEW--LRSQIGLVTQEPA 395
+G +G GKS+++ R D G +L NI + ++ LR Q+G+V Q P
Sbjct: 52 IGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111
Query: 396 LLSLSIRDNIAY-----GRDATLDQ-IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449
SI +NIA+ G LD+ +E++ + A ++ + + ++ G AL+
Sbjct: 112 PFPKSIYENIAFAPRANGYKGNLDELVEDSLRRA-------AIWEEVKDKLKEKGTALSG 164
Query: 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
Q+ +L IARA+ + P +LL+DE LD + R V+E L L + + TII+
Sbjct: 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE-LCLELKEQYTIIM 215
|
Length = 274 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 9e-15
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 23/218 (10%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL-KLYNLRWLR 1129
+L SL+V G+ V+G +G GK+T++ + +G + LDG D+ KL R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 1130 NHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYD----- 1183
+ V Q IF T+ EN+ AA I Y+
Sbjct: 75 AGIAYVPQGREIFPRLTVEENL----------LTGLAAL-PRRSRKI--PDEIYELFPVL 121
Query: 1184 -THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI-MG 1241
+G RG DL+ GQ+Q++AIAR ++ +LLLDE + I+ + + + L G
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG 181
Query: 1242 NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSL 1278
+L+ R + D V+ GR+V G D L
Sbjct: 182 GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 28/198 (14%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG----ENIKNLKLEWLRSQIGLVTQEPA 395
+ G +G+GKS+++ + P G ++L+G ++ K + L + +IGLV Q+ A
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85
Query: 396 LLS-LSIRDNIAYG---RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451
L L++R+N+A+G + D+I + + L Y Q L+ +
Sbjct: 86 LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLG--LDHLLNRYPAQ-------LSGGE 136
Query: 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM------LGRSTIIIARRL 505
K ++++ARA+ P +LLLDE LD RA++ L + L I + L
Sbjct: 137 KQRVALARALAAQPELLLLDEPFSALD----RALRLQLLPELKQIKKNLNIPVIFVTHDL 192
Query: 506 S-LIRNADYIAVMDEGRL 522
S AD I VM++GRL
Sbjct: 193 SEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 1e-14
Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 15/234 (6%)
Query: 1052 GSIELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV 1109
I L NV + Y + E L+N SL + V+G +GSGKST+I L
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 1110 AGQVLLDGRDL-----KLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNASEAEV 1162
GQ ++ + K+ ++ LR +GLV Q P +F TI ++I + N E +
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
+ ++ + LP Y V +L+ GQK+R+A+A ++ + L+LDE +
Sbjct: 125 EAYKKVPELLKLV-QLPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 1223 IESESSRVVQEALDTLIMG-NKTTILIAHRA-AMMRHVDNIVVLNGGRIVEEGT 1274
++ + + L K I++ H ++R D ++V++ G+++ G+
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 12/189 (6%)
Query: 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL---LDGRDLKLYNLR 1126
L L + LK+ + +A +G SG GKST++ R D + G + L RD +Y+ +
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 1127 W----LRNHLGLVQQEPIIFSTTIRENIIYA-RHNASEAEVKEAARIANAHHFISSLPHG 1181
LR +G+V Q P F +I ENI +A R N + + E + +++
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRR---AAIWEE 150
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
+ +G L+ GQ+QR+ IAR + +LL+DE S+++ S+R V+E L +
Sbjct: 151 VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEE-LCLELKE 209
Query: 1242 NKTTILIAH 1250
T I++ H
Sbjct: 210 QYTIIMVTH 218
|
Length = 274 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 15/218 (6%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKNLKLEW--LR 384
L++P + A++G +G GKS+ I + GE+ +G NI K++ LR
Sbjct: 33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELR 92
Query: 385 SQIGLVTQEPALLSLSIRDNIAYG-RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443
IG+V Q+ SI DN+AYG R ++ +I +L + ++
Sbjct: 93 KNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ 152
Query: 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIAR 503
L+L+ Q+ +L IARA+ NP +LL+DE T LD + R ++E L L + + TI+I
Sbjct: 153 ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEE-LILKLKEKYTIVI-- 209
Query: 504 RLSLIRNADYIA-VMDEGRLFEMGTHDELLATGDLYAE 540
+ N A V D+ F MG E T +++
Sbjct: 210 ---VTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 22/213 (10%)
Query: 1072 LSNFSLKVN----GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL----KLY 1123
L NF+L N A+ G SGSGK+++I++I P G++ L+GR L K
Sbjct: 10 LGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGI 69
Query: 1124 NLRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGY 1182
L + +G V Q+ +F T+R N+ Y + A+ + + H + P
Sbjct: 70 FLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP--- 126
Query: 1183 DTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGN 1242
L+ G+KQR+AI R +L +LL+DE +S++ R + L+ L
Sbjct: 127 --------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI 178
Query: 1243 KTTIL-IAHR-AAMMRHVDNIVVLNGGRIVEEG 1273
IL ++H ++R D +VVL G++ G
Sbjct: 179 NIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 1e-14
Identities = 56/239 (23%), Positives = 107/239 (44%), Gaps = 28/239 (11%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP--V 1109
G I + ++ Y + VL + SL++ G+ +A++G SG GK+T++ I F +
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 1110 AGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARI 1168
G++ + RDL + + L L+ Q +F + +N+ + + A R+
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 1169 ANAHHFI------SSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
A+A + + LP L+ G +QRIAIAR + +LLLDE S+
Sbjct: 119 ADALKLVGLGDAAAHLPA-----------QLSGGMQQRIAIARAIAIEPDVLLLDEPLSA 167
Query: 1223 IESESSRVVQEALDTL--IMGNKTTILIAH-RAAMMRHVDNIVVLNGGRIVEEGTHDSL 1278
+++ ++E + L + T + + H + + D ++ GR+ G +L
Sbjct: 168 LDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 1e-14
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 20/214 (9%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENI--KNLK 379
L + +P AL+G +G GKS+ I + R D G+V ++GE+I ++
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYG------RDATLDQIEEAAKIAHAHTFISSLE 433
+ LR +G+V Q+P +SI DN+AYG LD + E A + A L
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAA------LW 141
Query: 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493
++ L+L+ Q+ +L IAR + + P I+L DE T LD + +++ + L
Sbjct: 142 DETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK 201
Query: 494 LGRSTIIIARRL-SLIRNADYIAVMDEGRLFEMG 526
+ +I+ + R +DY G L E G
Sbjct: 202 KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235
|
Length = 258 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 24/233 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA--- 1110
+E K+V F YP + L++ S + G A++G +GSGKSTI LI P
Sbjct: 6 VEFKHVSFTYPDSKKP-ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1111 GQVLLDGRDLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHN--ASEAEVKEAA 1166
++ +DG L + +R +G+V Q P T+ +++ + N E+ +
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 1167 RIANAH----HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
R A +I S P +L+ GQKQR+AIA ++ I++LDE++S
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 1223 IESESSRVVQEALDTLIMGNKTTIL-IAHRAAMMRHVDNIVVLNGGRIVEEGT 1274
++ + + + L N T++ I H D ++VL+ G+++ +G+
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS 226
|
Length = 282 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 58/214 (27%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
++ + + LVG +G GKS++ L+ +PT GE+L +G++I L
Sbjct: 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------ 81
Query: 392 QEPALLSLSIRDNIAYGRDATLDQIEEAAKI-----AHAHTFISSLEKGYETQVGRAGLA 446
++ +++ E + + + L G
Sbjct: 82 -----------------KEERRERVLELLEKVGLPEEFLYRYPHELSGG----------- 113
Query: 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-----LGRSTIII 501
Q+ ++ IARA+ LNP +++ DE LD + + L+LL LG + + I
Sbjct: 114 ----QRQRIGIARALALNPKLIVADEPVSALDVSVQAQI---LNLLKDLQEELGLTYLFI 166
Query: 502 ARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534
+ LS++R +D IAVM G++ E+G +E+ +
Sbjct: 167 SHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 1e-14
Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
I +V Y L L N + A++G SG GKST + + R D
Sbjct: 6 ITSSDVHLFYGKFE---ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 1109 VAGQVLLDGRDL---KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARH---------- 1155
+ G V L G+++ ++ LR +G+V Q+P F +I EN+IY
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQ-LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVL 121
Query: 1156 -NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL 1214
A E +K+AA H+ + L+ GQ+QR+ IARV+ ++
Sbjct: 122 DEAVETSLKQAAIWDEV-----------KDHLHESALSLSGGQQQRVCIARVLAVKPDVI 170
Query: 1215 LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250
LLDE +S+++ SS ++ L L T IL+ H
Sbjct: 171 LLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTH 205
|
Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 30/219 (13%)
Query: 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389
F LTVPA + VA++G +G+GKS+++ L+ F P GE+L++G + + +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH--TASPPAERPVSM 75
Query: 390 VTQEPALLS-LSIRDNIAYGRDATLD-QIEEAAKIAHAHTFISSLEKGYETQVGRAGL-- 445
+ QE L + L++ NI G L E+ K+ A QVG AG
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA-----------AAQVGLAGFLK 124
Query: 446 ----ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-----LGR 496
L+ Q+ ++++AR ++ ILLLDE LD A R E L L+
Sbjct: 125 RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD-PALR--AEMLALVSQLCDERKM 181
Query: 497 STIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELLAT 534
+ +++ R AD + +D GR+ G+ ELL+
Sbjct: 182 TLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220
|
Length = 231 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-14
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 351 SSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWLRSQIGLVTQEPAL-LSLSIRDNIAYG 408
S+++ L+ PT G +LLDGE+ L + LR +IG+V Q+P L L++R+N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 409 --RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466
+ EEA + F+ E G QK +++IARA+L P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR-EPVGTLSGG---------QKQRVAIARALLKKPK 110
Query: 467 ILLLDEVT 474
+LLLDE T
Sbjct: 111 LLLLDEPT 118
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (186), Expect = 2e-14
Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 12/234 (5%)
Query: 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG--- 1111
E++N +F Y +R + VL + +L + + A +G SG GKST + + + D + G
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1112 --QVLLDG---RDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
++ G R K+ +L LR +G+V Q+P F +I +N+ Y N + K
Sbjct: 141 EGEIYFLGTNTRSKKISSLE-LRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE 199
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+I ++L + G L+ GQ+QR+ IAR + +LL+DE +S+++
Sbjct: 200 KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLL 1279
++ ++E + L + I++ H A + + D V G I E G ++
Sbjct: 260 ATAKIEELILEL-KKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-14
Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 11/227 (4%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG-- 1111
++N+D Y E L + +L + Q A++G SG GKST++ + R D + G
Sbjct: 4 FNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 1112 ---QVLLDGRDL-KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAAR 1167
++ +DG D+ ++ LR +G+V Q+P F +I EN+ Y + K
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDE 120
Query: 1168 IANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESES 1227
+ ++L + L+ GQ+QR+ IAR + ++L+DE +S+++ +
Sbjct: 121 VVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
Query: 1228 SRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
+ ++E ++ L N T +++ H R + D G +VE
Sbjct: 181 THKIEELMEEL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHD 226
|
Length = 249 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 2e-14
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 8/217 (3%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG-----QVLLDGRDLKLY-N 1124
VL S+ +++G +GSGK+T + + R D V+G VLL GR + Y +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDT 1184
+ R +G++ Q P F +I +N++ KE +A A L
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 1185 HVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKT 1244
+ L+ GQ+Q + +AR + N +LLLDE +S+++ ++ ++E + +L T
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL-ADRLT 214
Query: 1245 TILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLA 1280
I++ H A + D + GR+VEEG + L +
Sbjct: 215 VIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
Length = 276 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 57/211 (27%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
L+ SL++ G V V+G +G+GKST+++ I P +GQ+L+DG D+ ++ N
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 1131 HLGLVQQEPIIFST---TIRENIIYARHNASEAEVKEAARIANAHHF---ISSLPHGYDT 1184
L V Q+P+ + TI EN+ A + + A F ++ L G +
Sbjct: 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLEN 140
Query: 1185 HVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK- 1243
+ R L+ GQ+Q +++ L ILLLDE +++++ +++ V E ++ +K
Sbjct: 141 RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKL 200
Query: 1244 TTILIAHRAAMMRHV----DNIVVLNGGRIV 1270
TT+++ H M + +++L+ G+IV
Sbjct: 201 TTLMVTHN---MEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-14
Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 19/221 (8%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP----VAGQVLLDGRDLKLYNLRW 1127
L N S G+ +AV+G SG+GK+T+++ + F P +G VLL+G + + +
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPI---DAKE 96
Query: 1128 LRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFIS--SLPHGYDT 1184
+R VQQ+ + T T+RE++++ H V + + + L +T
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 1185 HVG----MRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM 1240
+G ++G L+ G+++R+A A +L + P+L DE +S ++S + V + L L
Sbjct: 157 RIGVPGRVKG--LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ 214
Query: 1241 GNKTTILIAHR--AAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
KT I H+ + + D I+++ GR+ G+ D +
Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
+L SL + G+ +A++G +G+GKST++ + P +G+V L+G L + L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 1131 HLG-LVQQEPIIFSTTIRENIIYARH-NASEAEVKEAARIANAHHFISSLPH----GYDT 1184
H L Q + F T++E + R + S E +E RIA + L Y T
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 1185 HVGMRGVDLTPGQKQRIAIARV------VLKNAPILLLDEASSSIESESSRVVQEALDTL 1238
L+ G++QR+ +ARV + + L LDE +S+++ L
Sbjct: 136 --------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL 187
Query: 1239 IMGNKTTILIAHR---AAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
+ + H AA + D IV+L+ GR++ G+ +L
Sbjct: 188 AREGGAVLAVLHDLNLAAQ--YADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 42/224 (18%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKNLKLE--WLR 384
L + + A +G +G GKS+++ + R ++ GEVLLDGE++ ++ +R
Sbjct: 25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 385 SQIGLVTQEP-ALLSLSIRDNIAYG-------RDATLDQI-EEAAKIAHAHTFISSLEKG 435
IG+V Q P ++SIRDN+ G LD++ E++ + A +L
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGA-------NLWNE 137
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLG 495
+ ++ + G L+ Q+ +L IARA+ + P +LL+DE LD + A+++ ++ L
Sbjct: 138 VKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q 196
Query: 496 RSTIII-------ARRLSLIRNADYIA------VMDEGRLFEMG 526
TI+I A R+S D A GRL E+
Sbjct: 197 DYTIVIVTHNMQQAARVS-----DQTAFFNLEATGKPGRLVEID 235
|
Length = 258 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 68/242 (28%), Positives = 103/242 (42%), Gaps = 40/242 (16%)
Query: 1054 IELKNVDFCYPS-------------------RPEVLVLSNFSLKVNGGQTVAVVGVSGSG 1094
IEL+NV YP+ E L + S +V G+ + ++G +G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 1095 KSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI-IYA 1153
KST++ L+ Y P +G V + GR L L G P + T RENI +
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRGRVSSLLGL-----GGGF---NPEL---TGRENIYLNG 109
Query: 1154 R-HNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP 1212
R S E+ E +I F S L D V + G K R+A A
Sbjct: 110 RLLGLSRKEIDE--KIDEIIEF-SELGDFIDLPVKT----YSSGMKARLAFAIATALEPD 162
Query: 1213 ILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVE 1271
ILL+DE + ++ Q L L+ KT IL++H + ++ + D +VL G+I
Sbjct: 163 ILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222
Query: 1272 EG 1273
+G
Sbjct: 223 DG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 3e-14
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 45/227 (19%)
Query: 309 IEFRNVYF---SYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL--MERFYDP 363
+ FRN+ S S+ +L + A++G +G+GKS+++ R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 364 TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKI 422
GEVL++G + L R IG V Q+ L L++R+ + + AAK
Sbjct: 64 VSGEVLING---RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF-----------AAK- 108
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
+ L G ++ ++SIA ++ NPS+L LDE T GLD +
Sbjct: 109 ------LRGLSGG---------------ERKRVSIALELVSNPSLLFLDEPTSGLDSSSA 147
Query: 483 RAVQEAL-DLLMLGRSTIIIARRLS--LIRNADYIAVMDEGRLFEMG 526
V L L GR+ I + S + D + ++ +GR+ G
Sbjct: 148 LQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 3e-14
Identities = 55/201 (27%), Positives = 102/201 (50%), Gaps = 24/201 (11%)
Query: 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LS 400
L+G +G GK++++ L+ F P G ++LDGE++ N+ LR I +V Q AL ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 401 IRDNIAYG-------RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453
+ +N+A+G R ++ EA ++ F Q L+ Q+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADR----KPHQ-------LSGGQQQ 107
Query: 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLS-LIRN 510
++++ARA++ P ILLLDE LD + +Q L + LG + + + +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 511 ADYIAVMDEGRLFEMGTHDEL 531
+D IA+M +G++ ++GT +E+
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-14
Identities = 59/239 (24%), Positives = 103/239 (43%), Gaps = 33/239 (13%)
Query: 319 LSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL 378
+ + +L G L+V V LVG NG+GK++++ + PT G VL+ G++++ L
Sbjct: 11 VEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL 70
Query: 379 KLEWLRSQIGLVTQEPAL-LSLSIRDNIAYGR--------------DATLDQIEEAAKIA 423
++ V Q+ +L +R + GR A +++ E +A
Sbjct: 71 SARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA 130
Query: 424 H-AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF-EA 481
A ++SL G E Q++ L ARA+ +LLLDE T LD
Sbjct: 131 QFADRPVTSLSGG-------------ERQRVLL--ARALAQATPVLLLDEPTASLDINHQ 175
Query: 482 ERAVQEALDLLMLGRSTIIIARRLSL-IRNADYIAVMDEGRLFEMGTHDELLATGDLYA 539
R ++ L+ G++ + L L R D + ++ +GR+ G ++L L A
Sbjct: 176 VRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRA 234
|
Length = 402 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 48/237 (20%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF--YDPVAGQVLLDGRDLKLYNL--- 1125
+L +L V G+ A++G +GSGKST+ I Y+ G++L DG D+ L
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL--ELSPD 76
Query: 1126 -RWLRNHLGLVQQEPI-IFSTTIRENIIYARHNASEA---------EVKEAARIANAHHF 1174
R R + L Q P+ I T + + A + A E+KE A +
Sbjct: 77 ER-ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAEL------ 129
Query: 1175 ISSLPHGYDTHVGM------RGVD--LTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+G+ R V+ + G+K+R I +++L + +LDE S ++ +
Sbjct: 130 -----------LGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDID 178
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMMRHV--DNIVVLNGGRIVEEGTHDSLLAK 1281
+ ++V E ++ L + ++I H ++ ++ D + VL GRIV+ G D LA+
Sbjct: 179 ALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG--DPELAE 233
|
Length = 251 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 32/225 (14%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
V++ SL V G+ V ++G +G+GK+T +I P +G++LLDG+D+ + R
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPM-HKRA 73
Query: 1131 HLGL--VQQEPIIF-STTIRENIIYARHNASEAEVKEAARIANAHHFIS--SLPHGYDTH 1185
LG+ + QE IF T+ ENI+ + + R + + H +
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAV---LEIRGLSKKEREEKLEELLEEFHITHLRKS- 129
Query: 1186 VGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGN--- 1242
+ L+ G+++R+ IAR + N LLLDE + ++ + + +Q+ + L
Sbjct: 130 ---KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGV 186
Query: 1243 -------KTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
+ T+ I RA ++ G+++ EGT + + A
Sbjct: 187 LITDHNVRETLSITDRA---------YIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 56/232 (24%), Positives = 110/232 (47%), Gaps = 33/232 (14%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E NV + + L L + + V L+G +G GK++ + ++ +PT G +
Sbjct: 1 VELENVTKRF---GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYG-------RDATLDQIEEAA 420
+ G ++ +L + I +V Q AL +++ DNIA+G +D +++ E A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
++ I L Q L+ Q+ ++++ RA++ P + L+DE LD +
Sbjct: 116 ELLQ----IEHLLDRKPKQ-------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 481 AERAVQEALDLLM--LGRSTIII----ARRLSLIRNADYIAVMDEGRLFEMG 526
++ L L LG +TI + +++ AD IAVM++G++ ++G
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTM---ADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 4e-14
Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 12/234 (5%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
IE +N++ Y + L+N ++K+ A++G SG GKST + + R D
Sbjct: 8 IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 1109 VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
+ G V+ +G+++ +++ LR +G+V Q P F +I +NI Y + K+
Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLD 124
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
I S+L + + + L+ GQ+QR+ IAR + ++L+DE +S+++
Sbjct: 125 EIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPI 184
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLL 1279
S+ ++E + L + T I++ H R D G I EE + D L
Sbjct: 185 STGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 46/211 (21%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF--YDPVAGQVLLDGRDLKLYNL--- 1125
+L +L + G+ A++G +GSGKST+ I Y+ G++L G D+ +L
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT--DLPPE 72
Query: 1126 -RWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDT 1184
R R + L Q P VK A F+ +
Sbjct: 73 ER-ARLGIFLAFQYPPEIP-----------------GVKNA-------DFLRYV------ 101
Query: 1185 HVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKT 1244
+ G G G+K+R I +++L + +LDE S ++ ++ R+V E ++ L K+
Sbjct: 102 NEGFSG-----GEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1245 TILIAHRAAMMRHV--DNIVVLNGGRIVEEG 1273
++I H ++ ++ D + VL GRIV+ G
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 4e-14
Identities = 60/211 (28%), Positives = 97/211 (45%), Gaps = 11/211 (5%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-R 384
IL G L VP + ++GRNG GK++++ + G + LDGE+I L R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 385 SQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443
+ I V Q + L++ +N+ G A + + L+ E R
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR--SRKIPDEIYELFPVLK---EMLGRRG 129
Query: 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIII 501
G L+ Q+ +L+IARA++ P +LLLDE T G+ + + + L G + +++
Sbjct: 130 GD-LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLV 188
Query: 502 ARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531
+ L R AD VM+ GR+ G DEL
Sbjct: 189 EQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 4e-14
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 1042 SSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISL 1101
K + I L+NV Y + V N + G+ A++G SG GKST++
Sbjct: 2 IKTNKKISKNIIISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRS 58
Query: 1102 IERFYDPVA-----GQVLLDGRDLKLYNLRW----LRNHLGLVQQEPIIFSTTIRENIIY 1152
+ R D + G+VL DG D LY+ R +R +G+V Q+P F +I ENI +
Sbjct: 59 LNRMNDLIEGCSLKGRVLFDGTD--LYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAF 116
Query: 1153 -ARHNASEAEVKEAARIANAHHFISSLPHG--YDT---HVGMRGVDLTPGQKQRIAIARV 1206
AR N ++ E SL +D + G L+ GQ+QR+ IAR
Sbjct: 117 GARINGYTGDMDELVE--------RSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168
Query: 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250
+ ++L+DE S+++ S+ ++E + L N T +++ H
Sbjct: 169 IAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 5e-14
Identities = 62/213 (29%), Positives = 113/213 (53%), Gaps = 19/213 (8%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL---K 379
+ +L G L++ + VA+VG +GSGKS+++ L+ +PT GEVL +G+++ L +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 380 LEWLRSQ-IGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEK-GY 436
LR++ +G + Q LL + +N+A ++EA + A+ LEK G
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYE-----MLEKVGL 131
Query: 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--- 493
E ++ L+ ++ +++IARA++ PS++L DE TG LD + + DL++
Sbjct: 132 EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKII---FDLMLELN 188
Query: 494 --LGRSTIIIARRLSLIRNADYIAVMDEGRLFE 524
L S +++ L L + D + M +G+LF
Sbjct: 189 RELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 6e-14
Identities = 60/235 (25%), Positives = 114/235 (48%), Gaps = 15/235 (6%)
Query: 313 NVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372
N++FS L P+L L + + +A+ G GSGK+S++ L+ LGE+
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLI-------LGELEPSE 91
Query: 373 ENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSL 432
IK+ +I +Q ++ +I++NI +G + + K I+
Sbjct: 92 GKIKH------SGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKF 145
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDL 491
+ T +G G+ L+ Q+ ++S+ARAV + + LLD G LD E+ + E+ +
Sbjct: 146 PEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCK 205
Query: 492 LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCE 545
LM ++ I++ ++ ++ AD I ++ EG + GT EL + D ++L+ +
Sbjct: 206 LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYD 260
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 6e-14
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 17/211 (8%)
Query: 338 KAVALVGRNGSGKSSIIPLMERFYDPTLG-----EVLLDGENI--KNLKLEWLRSQIGLV 390
+ +G +G GKS+++ + R D G V G+++ K + +R IG+V
Sbjct: 35 EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94
Query: 391 TQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450
Q+P S+SI DN+A+G + + ++ HA ++L + ++ +GL+L+
Sbjct: 95 FQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQG-AALWDEVKDKLKVSGLSLSGG 153
Query: 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL-SLIR 509
Q+ +L IARA+ P +LLLDE LD A R V+E + L + ++ + IR
Sbjct: 154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIR 213
Query: 510 NADYIAVMD--------EGRLFEMGTHDELL 532
AD A G L EMG ++
Sbjct: 214 VADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244
|
Length = 261 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 7e-14
Identities = 83/356 (23%), Positives = 144/356 (40%), Gaps = 27/356 (7%)
Query: 314 VYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE 373
++FS S P+L + + +A+ G GSGKSS++ ++ +P+ G++ G
Sbjct: 429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG- 487
Query: 374 NIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLE 433
+I Q ++ +I+DNI +G + K I+
Sbjct: 488 ------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFP 535
Query: 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLL 492
+ +T +G G+ L+ Q+ ++S+ARAV + + LLD LD E+ + E+ L L
Sbjct: 536 EKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL 595
Query: 493 MLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG-DLYAELLKCEEAAKLP 551
M ++ I++ +L ++ AD I ++ EG + GT EL A D + LL E
Sbjct: 596 MSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFS 655
Query: 552 RRMPVRNYKETSTFQ---IEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQE 608
RN T T + I+ D S S E + P R +
Sbjct: 656 AER--RNSILTETLRRVSIDGD-STVFSGPETIKQSFKQPPP--EFAEKRKQSIILNPIA 710
Query: 609 SPKVLSPPSEKMLE-NGMPMDAADKEPSIRRQDSF---EMRLPELPKIDVHSSNRQ 660
S + S + ++ A +EPS R+ E LP+ + + Q
Sbjct: 711 SARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQ 766
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 8e-14
Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 30/213 (14%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
I+++N++ Y E L N S+++ A++G SG GKST I + R D
Sbjct: 13 IKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCR 69
Query: 1109 VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYAR--HNASEAE--- 1161
+ G+V ++G D+ ++ LR ++G+V Q+P F +I +N+ Y H A++ +
Sbjct: 70 IEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG 129
Query: 1162 -VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
V+ A R A S + + L+ GQ+QR+ IAR + I+L DE +
Sbjct: 130 VVENALRSAALWDETSD-------RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPT 182
Query: 1221 SSIESESSRVVQEALDTLIMGNK---TTILIAH 1250
S+++ S+ +++ LIM K T +++ H
Sbjct: 183 SALDPISTARIED----LIMNLKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 8e-14
Identities = 54/216 (25%), Positives = 109/216 (50%), Gaps = 12/216 (5%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYD--PT---LGEVLLDGENIKNLKLE--WLR 384
+ P A++G +G GKS+++ + R +D P+ G++LLD +I + ++ +R
Sbjct: 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIR 84
Query: 385 SQIGLVTQEP-ALLSLSIRDNI--AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
++G+V Q+P ++SI DN+ Y + +++ EA +I + +L + ++
Sbjct: 85 RRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR-SEADEIVESSLKRVALWDEVKDRLK 143
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
+ L+ Q+ +L IAR + + P ++L+DE LD + ++E ++ L + II+
Sbjct: 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIV 203
Query: 502 ARRL-SLIRNADYIAVMDEGRLFEMGTHDELLATGD 536
+ R +DY A G L E G ++ T +
Sbjct: 204 THNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 9e-14
Identities = 53/219 (24%), Positives = 104/219 (47%), Gaps = 9/219 (4%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
++ N YFS+ + LS + +P + +VG+ G GKSS++ + G+V
Sbjct: 1 VQVTNGYFSW--GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 369 LLDGENIKNLKLEWLRSQ----IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAH 424
+N E RS+ + Q+P LL+ ++ +NI +G + +
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE-AER 483
I L G +T++G G+ L+ Q+ ++ +ARA+ N +I+ LD+ LD ++
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 484 AVQEALDLLMLG--RSTIIIARRLSLIRNADYIAVMDEG 520
+QE + + R+ +++ +L + +AD+I M +G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 9e-14
Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 35/254 (13%)
Query: 1048 PNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD 1107
P S E+ ++F Y L N ++ V+ Q A++G SG GKST + R +D
Sbjct: 12 PTQQKS-EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67
Query: 1108 -----PVAGQVLLDGRDLKLYNLRW----LRNHLGLVQQEPIIFSTTIRENIIYA----- 1153
G+++L ++ + + +R + +V Q+P F +I EN+ Y
Sbjct: 68 LYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRG 127
Query: 1154 --RHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA 1211
R + E V+ A R A +L +G +L+ GQ+QR+ IAR + +
Sbjct: 128 VKRRSILEERVENALRNA-------ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDP 180
Query: 1212 PILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIA----HRAAMMRHVDNIVVLNGG 1267
ILL DE +S+++ ++ ++E + L NK TILI +AA R D + G
Sbjct: 181 EILLFDEPTSALDPIATASIEELISDL--KNKVTILIVTHNMQQAA--RVSDYTAYMYMG 236
Query: 1268 RIVEEGTHDSLLAK 1281
++E G D++ K
Sbjct: 237 ELIEFGATDTIFIK 250
|
Length = 265 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 9e-14
Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 22/212 (10%)
Query: 337 KKAV-ALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENI--KNLKLEWLRSQIG 388
K AV AL+G +G GKS+ + + R D + GE+L +G NI N+ + LR +IG
Sbjct: 46 KHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIG 105
Query: 389 LVTQEPALLSLSIRDNIAYG-------RDATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
+V Q+P SI +NI + R + LD+I E + A L + ++
Sbjct: 106 MVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA------LWDEVKDRLH 159
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
+ L+L+ Q+ +L IAR + + P++LLLDE LD + ++E + L S II+
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV 219
Query: 502 ARRL-SLIRNADYIAVMDEGRLFEMGTHDELL 532
+ +R +D A G L E +++
Sbjct: 220 THNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251
|
Length = 268 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 18/201 (8%)
Query: 1049 NVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD- 1107
+ +I++K++ F Y + + S+ + + A++G SG GKST I + R +
Sbjct: 3 QLIPAIKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL 59
Query: 1108 --PVA--------GQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNA 1157
PV GQ + D R N+ LR +G+V Q P F +I EN+ Y +
Sbjct: 60 EGPVKVEGVVDFFGQNIYDPR----ININRLRRQIGMVFQRPNPFPMSIYENVAYGVRIS 115
Query: 1158 SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLD 1217
++ + I + ++L + + L+ GQ+QR+ IAR + +LL+D
Sbjct: 116 AKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175
Query: 1218 EASSSIESESSRVVQEALDTL 1238
E S+++ ++ V+E + +L
Sbjct: 176 EPCSALDPIATMKVEELIHSL 196
|
Length = 259 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 39/241 (16%)
Query: 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371
RNV F R + LS LT PA K L+G NGSGKS+++ ++ R P+ GE+LLD
Sbjct: 15 RNVSFRVPGRTLLHPLS---LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 372 GENIKNLKLEWLRSQIGLVTQE-PALLSLSIRDNIAYGR-----------DATLDQIEEA 419
+ +++ + ++ + Q+ PA +++R+ +A GR A +++EEA
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131
Query: 420 AKIA----HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475
+ AH + SL G E Q RA +A+ Q + LLLDE T
Sbjct: 132 ISLVGLKPLAHRLVDSLSGG-ERQ--RAWIAMLVAQ------------DSRCLLLDEPTS 176
Query: 476 GLDFEAERAVQEALDLLMLGRSTIIIARRLSLI----RNADYIAVMDEGRLFEMGTHDEL 531
LD + V + L R +IA L I R DY+ + G + GT EL
Sbjct: 177 ALDIAHQVDVLALVHRLSQERGLTVIA-VLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
Query: 532 L 532
+
Sbjct: 236 M 236
|
Length = 265 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 26/220 (11%)
Query: 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKLYN 1124
L + N L + Q A +G SG GKSTI+ R D V G+V G++L Y
Sbjct: 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL--YA 81
Query: 1125 LRW----LRNHLGLVQQEPIIFSTTIRENIIY-ARHNASEAE----VKEAARIANAHHFI 1175
+R +G+V Q+P F +I +NI Y AR N + + V+ + R A
Sbjct: 82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQA------ 135
Query: 1176 SSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL 1235
+L + G+ L+ GQ+QR+ IAR + ++L+DE S+++ S+ ++E +
Sbjct: 136 -ALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194
Query: 1236 DTLIMGNKTTILI-AHRAAMMRHVDNIVVLNGGRIVEEGT 1274
L + TI+I H V ++ + E G
Sbjct: 195 HEL--KEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGG 232
|
Length = 264 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 1e-13
Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 94/258 (36%)
Query: 1054 IELKNVDFCYPSR------PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD 1107
+E+KN+ +P V + S + G+T+ +VG SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1108 PVAGQVLLDGRDLKLYN----LRWLRNHLGLV-------QQEPIIFSTTIRENIIYARHN 1156
P +G++L +G+D+ + + L V + P S R+ I
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRI------ 118
Query: 1157 ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLL 1216
IAR + N +++
Sbjct: 119 ---------------------------------------------GIARALALNPKLIVA 133
Query: 1217 DEASSSIESESSRVVQEALDTLIMG-------------NKTTILIAHRAAMMRHV-DNIV 1262
DE S ALD + T + I+H +++R++ D I
Sbjct: 134 DEPVS------------ALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIA 181
Query: 1263 VLNGGRIVEEGTHDSLLA 1280
V+ G+IVE G + + +
Sbjct: 182 VMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-13
Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 17/217 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ R++ Y + +L G T+ A + AL+G NG+GKS+++ ++ P G +
Sbjct: 12 LCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 369 LLDGENIKNLKLEWLRSQIG--LVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHA 425
+ G L Q+G LV QEP L +LS+++NI +G +++ ++
Sbjct: 69 EIGGNPCARLT-PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQL--- 124
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FEAERA 484
+++L + L + + Q ++ I R ++ + IL+LDE T L E ER
Sbjct: 125 ---LAALGCQLDLDSSAGSLEVADRQIVE--ILRGLMRDSRILILDEPTASLTPAETERL 179
Query: 485 VQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEG 520
+LL G + I+ +L IR AD I+VM +G
Sbjct: 180 FSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
Length = 510 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 65/233 (27%), Positives = 114/233 (48%), Gaps = 19/233 (8%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+I+L V Y + V++ S V G+ ++G +G+GKSTI +I P AG+
Sbjct: 41 AIDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGK 97
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQ-EPIIFSTTIREN-IIYARHNASEAEVKEAARIAN 1170
+ + G + R R +G+V Q + + T+REN +++ R+ EA I +
Sbjct: 98 ITVLGVPVP-ARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-IPS 155
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
F + L D V DL+ G K+R+ +AR ++ + +L+LDE ++ ++ + +
Sbjct: 156 LLEF-ARLESKADARVS----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210
Query: 1231 VQEALDTLIMGNKTTILIAHRAAMM----RHVDNIVVLNGGRIVEEGTHDSLL 1279
+ E L +L+ KT +L H M R D + VL GR + EG +L+
Sbjct: 211 IWERLRSLLARGKTILLTTH---FMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 23/235 (9%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I+FRNV Y + ++ G V + L+G NG+GK++ + ++ P G +
Sbjct: 8 IDFRNVEKRY---GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNI-AYGRDATLDQIEEAAKIAHAH 426
L GE + + + R ++G+V Q L ++R+N+ +GR L A +
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLL 123
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
F + LE + +VG L+ K +L++ARA++ +P +L+LDE T GLD +A +
Sbjct: 124 EF-AKLENKADAKVG----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMW 178
Query: 487 EALDLLMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534
E L L+ TI++ A RL D + V++EGR G L+ +
Sbjct: 179 ERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAEGAPHALIES 228
|
Length = 306 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 28/236 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----P 363
IE N+ Y S ++ G L +P AL+G +G GKS+++ R +
Sbjct: 5 IETVNLRVYYGSNH---VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 364 TLGEVLLDGENIKNLKLEWL--RSQIGLVTQEP-ALLSLSIRDNIAYG---------RDA 411
GEV L G NI + ++ + R ++G+V Q P L+I DN+A G +
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 412 TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471
+++E A K A + Y + L+ Q+ +L IARA+ + P ILL+D
Sbjct: 122 LDERVEWALKKAALWDEVKDRLNDYPSN-------LSGGQRQRLVIARALAMKPKILLMD 174
Query: 472 EVTGGLDFEAERAVQEALDLLMLGRSTIIIARR-LSLIRNADYIAVMDEGRLFEMG 526
E T +D ++E L L + +++ R +DY+A + G+L E+G
Sbjct: 175 EPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-13
Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 20/222 (9%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKLYNLR 1126
+ N +L V G A++G SG GK+T + I R +D V G++LLDG+D+ Y R
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI--YGPR 77
Query: 1127 ----WLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHG 1181
+R +G+V Q+P F T ++ +N++ A + +A ++L
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE 137
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
+ L+ GQ+QR+ IAR + ILL+DE +S+++ S+ +++ + L
Sbjct: 138 VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL--K 195
Query: 1242 NKTTILIA----HRAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
TTI+I H+AA R D G +VE G D L
Sbjct: 196 KVTTIIIVTHNMHQAA--RVSDTTSFFLVGDLVEHGPTDQLF 235
|
Length = 252 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 30/196 (15%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE N+ SY +RP +L L+V + AL+G NG+GKS+++ + P+ GE+
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL---LSLSIRDNIAYGRDATLDQIEEAAKIAHA 425
+ G+ ++ + + LR IG V Q+ ++ ++++D + GR K
Sbjct: 62 KIFGKPVRK-RRKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKI-KLS--------IARAVLLNPSILLLDEVTGG 476
+LE +VG L +++I +LS +ARA+ NP +LLLDE G
Sbjct: 119 K-VDEALE-----RVGMEDLR---DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTG 169
Query: 477 LDFEAERAVQEALDLL 492
+D + +E DLL
Sbjct: 170 VDVAGQ---KEIYDLL 182
|
Length = 254 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
+ KN++ Y + L + ++ + + A++G SG GKST++ R D
Sbjct: 7 LSTKNLNLWYGEKH---ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 1109 VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAA 1166
+ G +L +G ++ ++ LR +G+V Q P F +I EN+ Y E K
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 1167 RIANAHHFISSLPHG----------YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLL 1216
I SL +D+ + + G GQ+QR+ IAR + N ++L+
Sbjct: 124 TIVE-----KSLKGAALWDEVKDRLHDSALSLSG-----GQQQRLCIARTLAVNPEVILM 173
Query: 1217 DEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250
DE S+++ ++ +++ L + T I++ H
Sbjct: 174 DEPCSALDPIATAKIED-LIEDLKKEYTVIIVTH 206
|
Length = 253 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 16/239 (6%)
Query: 309 IEFRNVYFSYLS-RP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
I F NV ++Y P E + K A+VG+ GSGKS++I + PT G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 367 EVLLDGENI----KNLKLEWLRSQIGLVTQ--EPALLSLSIRDNIAYGRDATLDQIEEAA 420
V +D I K+ + +R +IG+V Q E L ++ I +G ++E
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 421 KIAHAHTFISSLEKGYETQV-GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
+AH + ++ G+ V ++ ++ Q K++I + +NP I++LDE T GLD
Sbjct: 123 --NYAHRLL--MDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDP 178
Query: 480 EAERAVQEALDLLML--GRSTIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELLATG 535
+++R V L L ++ I+++ ++ + R AD + VM EG + + EL
Sbjct: 179 QSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
|
Length = 286 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-13
Identities = 68/229 (29%), Positives = 111/229 (48%), Gaps = 47/229 (20%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK---LEWLRSQIG 388
LT+ + + LVG +GSGKS++ + R P+ GE+ DG++I L + LR ++
Sbjct: 308 LTLRRGQTLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQ 366
Query: 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448
+V Q+P SLS R + IEE ++ +S+ E + R AL
Sbjct: 367 VVFQDP-YGSLSPRMTVG-------QIIEEGLRVHEPK--LSAAE-----RDQRVIEALE 411
Query: 449 E-----------------EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALD 490
E Q+ +++IARA++L P ++LLDE T LD R+VQ + LD
Sbjct: 412 EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD----RSVQAQVLD 467
Query: 491 LLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
LL G S + I+ L+++R + VM +G++ E G + + A
Sbjct: 468 LLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 21/215 (9%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNLKLE 381
L+ L + AL+G +GSGKS+++ + R D G ++ +G NI + + +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 382 W--LRSQIGLVTQEPALLSLSIRDNIAYG------RD-ATLDQIEEAAKIAHAHTFISSL 432
LR +IG+V Q+P +SI +N+ YG +D LD+ E + +S+
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKG------ASI 134
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492
+ ++ + L L+ Q+ ++ IAR + +P I+LLDE T LD + ++E L L
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
Query: 493 MLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMG 526
+ +++ R + R +D +G L E
Sbjct: 195 KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229
|
Length = 252 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 18/218 (8%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG-ENIKNLK-LEWLR 384
L+ +V + L+G NG+GK++++ ++ P GEVL DG ++ L R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 385 SQIGLVTQEPA-LLSLSIRDN--IAYGRD----ATLD---QIEEAAKIAHAHTFISSLEK 434
+ IG Q+P +L++R+N +A RD A+L + EE +I I ++
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE 140
Query: 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML 494
A L L+ QK L I + +P +LLLDE G+ E L L
Sbjct: 141 RDRL----AAL-LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG 195
Query: 495 GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531
S +++ + +R AD + V+ EG + G+ DE+
Sbjct: 196 KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 48/174 (27%), Positives = 85/174 (48%), Gaps = 18/174 (10%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
++ +N+ Y R V+++ SL+VN G+ V ++G +G+GK+T +I P +G
Sbjct: 3 STLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG 59
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGL--VQQEPIIF-STTIRENIIYA---RHNASEAEVKEA 1165
++LLD D+ + R LG+ + QE IF T+ +NI+ R + ++
Sbjct: 60 KILLDDEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKE 118
Query: 1166 ARIANAHHF-ISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE 1218
A F I+ L + L+ G+++R+ IAR + N +LLDE
Sbjct: 119 ELDALLEEFHITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDE 165
|
Length = 243 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
Query: 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371
N+ SY R +++ L V + + V L+G NG+GK++ ++ P G++LLD
Sbjct: 8 ENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD 64
Query: 372 GENIKNLKLEWLRSQIGL--VTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTF 428
E+I L + R+++G+ + QE ++ L++ DNI A L+ E+ K A
Sbjct: 65 DEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNI----MAVLEIREKDLKKAERKEE 119
Query: 429 ISSL--EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
+ +L E +L+ ++ ++ IARA+ NP +LLDE G+D
Sbjct: 120 LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
++ LTVP L+G NG+GKS+++ ++ PT GE++ DG W R
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH-------PWTRK 67
Query: 386 ---QIGLVTQEPALL-SLSIRDNI---AYGRDATLDQIEEAAKIAHAHTFISSLEKGYET 438
+IG + + P L +L+ R+N+ +I+E I L +
Sbjct: 68 DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIV-------DLTNTGKK 120
Query: 439 QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML---- 494
+ + L + K +L IA A+L +P +L+LDE T GLD +QE +L+
Sbjct: 121 KAKQFSLGM----KQRLGIAIALLNHPKLLILDEPTNGLD---PIGIQELRELIRSFPEQ 173
Query: 495 GRSTIIIARRLSLIRN-ADYIAVMDEGRL 522
G + I+ + LS ++ AD+I ++ EG L
Sbjct: 174 GITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 49/197 (24%), Positives = 95/197 (48%), Gaps = 33/197 (16%)
Query: 341 ALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-SL 399
L+G NG+GK++++ ++ P+ G + +DG+++ + LR +IG + QE + +
Sbjct: 29 GLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK-LRRRIGYLPQEFGVYPNF 87
Query: 400 SIRDNIAY----------GRDATLDQIEEAAKIA-HAHTFISSLEKGYETQVGRAGLALT 448
++R+ + Y A +D++ E + A I SL G
Sbjct: 88 TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGG------------- 134
Query: 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTII---IARRL 505
+ ++ IA+A++ +PSIL++DE T GLD E + L L R I+ I +
Sbjct: 135 --MRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDV 192
Query: 506 SLIRNADYIAVMDEGRL 522
+ + +AV+++G+L
Sbjct: 193 ESL--CNQVAVLNKGKL 207
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 50/211 (23%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131
L +L + G+ ++++G SG GKST+++LI P +G V+L+G+ +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI----------- 49
Query: 1132 LGLVQQEP-----IIFST-------TIRENIIYA----RHNASEAEVKEAARIANAHHFI 1175
EP ++F T+RENI A + S++E + I H +
Sbjct: 50 -----TEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRA---IVEEHIAL 101
Query: 1176 SSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE--------ASSSIESES 1227
L D G L+ G KQR+AIAR + +LLLDE +++ E
Sbjct: 102 VGLTEAADKRPG----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157
Query: 1228 SRVVQEALDTLIMGN---KTTILIAHRAAMM 1255
++ +E T++M +L++ R M+
Sbjct: 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVML 188
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-13
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 27/183 (14%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP--- 1108
G + LKNV P +L+N + + G+ V ++G SG GKST++S +
Sbjct: 1 GMLCLKNVSL---RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS 57
Query: 1109 VAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAAR 1167
G++ L+ + L + L + +G++ Q+ ++F ++ +N+++A +K AR
Sbjct: 58 CTGELWLNEQRLDM--LPAAQRQIGILFQDALLFPHLSVGQNLLFALPA----TLKGNAR 111
Query: 1168 IANAHHFISSLPHGYDTHVGMRGV------DLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
A+ + G+ G L+ GQ+ R+A+ R +L LLLDE S
Sbjct: 112 RNAANAAL--------ERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163
Query: 1222 SIE 1224
++
Sbjct: 164 RLD 166
|
Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-13
Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 40/199 (20%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I N+ +Y RP +L LT+ + + LVGRNG+GKS+++ ++ +P GEV
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAH- 426
K L++ +L QEP L ++ D + G + + E +
Sbjct: 61 TRP----KGLRVGYLS-------QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 427 ----TFISSLEK--------GYETQVGRA--GLALTEE----------QKIKLSIARAVL 462
++ LE E + A GL +E + ++++ARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 463 LNPSILLLDEVTGGLDFEA 481
P +LLLDE T LD E+
Sbjct: 170 EEPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 48/242 (19%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
IL+ L++P K AL+G NG GKS+++ R P G V L + I L L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 385 SQIGLVTQEPALLS---LSIRDNIAYGR--------------DATLDQIEEAAKIAH-AH 426
++ L+ Q L+ +++R+ +AYGR +A ++Q E +I H A
Sbjct: 76 RRLALLPQH--HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD 133
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
++ L G Q RA LA+ Q + ++LLDE T LD +
Sbjct: 134 RRLTDLSGG---QRQRAFLAMVLAQ------------DTPVVLLDEPTTYLDINHQ---V 175
Query: 487 EALDLL-ML---GRSTIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
E + L+ L G++ + + L+ R D++ V+ G + GT +E++ L
Sbjct: 176 ELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT-----PGL 230
Query: 542 LK 543
L+
Sbjct: 231 LR 232
|
Length = 255 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 4e-13
Identities = 68/245 (27%), Positives = 113/245 (46%), Gaps = 51/245 (20%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKS----TIISLIERFYDPVA---GQVLLDGRDL 1120
V + S + G+T+A+VG SGSGKS +I+ L+ A G +L DG DL
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDL 79
Query: 1121 KLYNLRWLR----NHLGLVQQEPIIFST-----TIRENI--IYARH-----NASEAEVKE 1164
+ R LR N +G++ QEP ++ TI + + + H A+ A E
Sbjct: 80 LAASERQLRGVRGNKIGMIFQEP--MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALE 137
Query: 1165 AAR---IANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP-ILLLDEAS 1220
I + + PH +L+ GQ+QR+ IA + L N P +L+ DE +
Sbjct: 138 LLELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIA-MALANEPDLLIADEPT 185
Query: 1221 S----SIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTH 1275
+ +++++ +++E L M + I H ++R D + V+ G IVE GT
Sbjct: 186 TALDVTVQAQILDLLKELQAELGMA---ILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242
Query: 1276 DSLLA 1280
++L A
Sbjct: 243 ETLFA 247
|
Length = 534 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-13
Identities = 67/278 (24%), Positives = 124/278 (44%), Gaps = 54/278 (19%)
Query: 1054 IELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
I++KN+ + + E+ L N S+++N G+ +A++G +GSGK+T I + P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 1112 QVLLDGRDL------------------------KLYNLRWLRNHLGLVQQ--EPIIFSTT 1145
+ +D K+ ++ +R +G+V Q E +F T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 1146 IRENIIYA--RHNASEAEVKEAARIANAHHFIS--SLPHGYDTHVGMRGVDLTPGQKQRI 1201
I ++II+ S+ E K+ A +I L Y + +L+ GQK+R+
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAA-----KYIELVGLDESY---LQRSPFELSGGQKRRV 174
Query: 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNI 1261
A+A ++ L+ DE ++ ++ + + + E D L KT IL+ H +DN+
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH------DLDNV 228
Query: 1262 -------VVLNGGRIVEEG-THDSLLAKNGLYVRLMQP 1291
+ G+I+++G T+D L L M+P
Sbjct: 229 LEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEP 266
|
Length = 305 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 4e-13
Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 27/239 (11%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP----LM---------ERFY-----DPT 364
E+ L+ T K ++G +GSGKS+++ L+ Y +
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGRDATLDQIEEAAKI 422
+ IKN K LR ++ +V Q P L +I +I +G A + EA K+
Sbjct: 98 ELITNPYSKKIKNFKE--LRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL 155
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
A + L+ Y + R+ L+ QK +++IA + + P IL+ DE T GLD + E
Sbjct: 156 AKFYLNKMGLDDSY---LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 483 RA-VQEALDLLMLGRSTIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDELLATGDLYA 539
+Q LD ++ +I + ++ AD + VMD+G++ + GT E+ +
Sbjct: 213 HEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIIN 271
|
Length = 320 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (174), Expect = 4e-13
Identities = 60/241 (24%), Positives = 116/241 (48%), Gaps = 17/241 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSG--FYLTVPAKKA--VALVGRNGSGKSSIIPLMERFYDPT 364
I+F V ++Y +P P S F + + KK AL+G GSGKS+++ + PT
Sbjct: 2 IKFEKVNYTY--QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 365 LGEV----LLDGENIKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGRDATLDQIEE 418
G+V ++ K +++ +R ++G+V Q P L ++ ++A+G E+
Sbjct: 60 EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
A KIA + L + ++ L+ Q +++IA + + P +L+LDE T GLD
Sbjct: 120 AEKIAAEKLEMVGLADEFWE---KSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 479 FEAERAVQEALDLLMLGRSTIIIARRL--SLIRNADYIAVMDEGRLFEMGTHDELLATGD 536
+A + + + + T+++ L + ADY+ ++++G + GT ++ D
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236
Query: 537 L 537
Sbjct: 237 F 237
|
Length = 288 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 64/240 (26%), Positives = 110/240 (45%), Gaps = 46/240 (19%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKLY--- 1123
L S+ + A++G SG GKST + + R D + G V LDG+D+ Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI--YQDG 118
Query: 1124 -NLRWLRNHLGLVQQEPIIFSTTIRENIIYA--RH-----------------NASEAEVK 1163
NL LR +G+V Q P F +IRENI Y +H +A + V+
Sbjct: 119 VNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
+ R A +L + + + L+ GQ+QR+ IAR + + ++L+DE +S++
Sbjct: 179 RSLRQA-------ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASAL 231
Query: 1224 ESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNI-----VVLNGGRIVEEGTHDSL 1278
+ ++ +++ ++ L T +++ H M+ I V L GG +VE D +
Sbjct: 232 DPIATSKIEDLIEEL-AEEYTVVVVTHN---MQQAARISDQTAVFLTGGELVEYDDTDKI 287
|
Length = 305 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 5e-13
Identities = 60/230 (26%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+I+L V Y + +V+++ S + G+ ++G +G+GKSTI ++ P G+
Sbjct: 4 AIDLVGVSKSYGDK---VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGK 60
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQ-EPIIFSTTIRENI-IYARHNASEAEVKEAARIAN 1170
+ + G + R R +G+V Q + + T+REN+ ++ R+ EA I +
Sbjct: 61 ITVLGEPVP-SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-IPS 118
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
F + L D V L+ G K+R+ +AR ++ + +L+LDE ++ ++ + +
Sbjct: 119 LLEF-ARLESKADVRVA----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 173
Query: 1231 VQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
+ E L +L+ KT +L H R D + VL GR + EG +L+
Sbjct: 174 IWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 62/213 (29%), Positives = 106/213 (49%), Gaps = 31/213 (14%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL---KLEWLRSQIGLVTQEPAL 396
VA++G +G+GKS+++ + R +P+ G +LL+G +I L KL LR +IG++ Q L
Sbjct: 31 VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90
Query: 397 LS-LSIRDNIAYGRDATLDQI--------EEAAKIAHAHTFISSLEKGYETQVGRAGLA- 446
+ L++ +N+ +GR EE + A +S+LE+ VG A A
Sbjct: 91 IERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERA-----LSALER-----VGLADKAY 140
Query: 447 -----LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTI 499
L+ Q+ +++IARA+ P ++L DE LD + + V + L + G + I
Sbjct: 141 QRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVI 200
Query: 500 IIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531
I ++ L + AD I + G + G EL
Sbjct: 201 INLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 6e-13
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
IL+ ++ A + + G +G GKS+++ ++ PT G +L +GE+I LK E R
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80
Query: 385 SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTF---ISSLEKGYETQVG 441
Q+ Q P L ++ DN+ + Q + A + F + L K
Sbjct: 81 QQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIA---- 136
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487
L+ +K ++S+ R + P +LLLDE+T LD + V E
Sbjct: 137 ----ELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178
|
Length = 225 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-13
Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 23/233 (9%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I+ V SY + +++G TV + + L+G NG+GKS+I ++ P G++
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDN-IAYGRDATLDQIEEAAKIAHAH 426
+ G + + R++IG+V Q L L ++R+N + +GR + E A I
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
F + LE + +V L+ K +L++ARA++ +P +L+LDE T GLD A +
Sbjct: 158 EF-ARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 212
Query: 487 EALDLLMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532
E L L+ TI++ A RL D + V++ GR G L+
Sbjct: 213 ERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 6e-13
Identities = 58/219 (26%), Positives = 97/219 (44%), Gaps = 33/219 (15%)
Query: 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388
G V + L+G NG+GK++ I ++ PT G + G ++ E +R +IG
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE-VRRRIG 76
Query: 389 LVTQEPAL-LSLSIRDNIA-YGRDATLDQIEEAAKIAHAHTFISSLE------KGYETQV 440
+V Q+ ++ L+ +N+ + R + E +I F+ LE K Y +
Sbjct: 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGM 136
Query: 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTII 500
R +L IAR+++ P +L LDE T GLD + V E ++ L I
Sbjct: 137 RR-----------RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185
Query: 501 I--------ARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ A +L D +A++D GR+ GT +EL
Sbjct: 186 LLTTHYMEEAEQL-----CDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 7e-13
Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 32/222 (14%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKLYNLR 1126
L + L + A +G SG GKST + + R D V G++ LDG D +Y+ R
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED--IYDPR 92
Query: 1127 W----LRNHLGLVQQEPIIFSTTIRENIIY-------ARHNASEAEVKEAA-RIANAHHF 1174
LR +G+V Q+P F +I EN+ Y AR A E+ E + R A
Sbjct: 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKA----- 147
Query: 1175 ISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEA 1234
L + G L+ GQ+QR+ IAR + + ++L+DE S+++ ++ V+E
Sbjct: 148 --GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL 205
Query: 1235 LDTLIMGNKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEG 1273
+D L N T +++ H +AA R + G +VE G
Sbjct: 206 IDEL-RQNYTIVIVTHSMQQAA--RVSQRTAFFHLGNLVEVG 244
|
Length = 267 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 61/246 (24%), Positives = 114/246 (46%), Gaps = 41/246 (16%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF+NV + +L L + + V ++G +GSGKS+++ + + + T G++
Sbjct: 2 IEFKNVSKHF---GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 369 LLDGENIK--NLKLEWLRSQIGLVTQE----PALLSLSIRDNIAYG----RDATLDQIEE 418
++DG + + +R + G+V Q+ P L +L +N+ +G R A+ ++ E+
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTAL---ENVMFGPLRVRGASKEEAEK 115
Query: 419 AAK--------IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLL 470
A+ AH + S L G Q+ +++IARA+ + P ++L
Sbjct: 116 QARELLAKVGLAERAHHYPSELSGG---------------QQQRVAIARALAVKPKLMLF 160
Query: 471 DEVTGGLDFEAERAVQEAL-DLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528
DE T LD E V + + DL G + +I+ + A + +D+GR+ E G
Sbjct: 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
Query: 529 DELLAT 534
L+
Sbjct: 221 QVLIKN 226
|
Length = 240 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 7e-13
Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 29/231 (12%)
Query: 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG-----QVLLDGRDL--KL 1122
+ + + + + + +G SG GKST++ + R D V G V G+D+ K
Sbjct: 22 MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81
Query: 1123 YNLRWLRNHLGLVQQEPIIFSTTIRENIIYA----RHNASEAE-VKEAARIANAHHFISS 1177
+ +R ++G+V Q+P FS +I +N+ + R+ + VK A + A +
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------A 134
Query: 1178 LPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDT 1237
L + + G+ L+ GQ+QR+ IAR + +LLLDE S+++ ++R V+E +
Sbjct: 135 LWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE 194
Query: 1238 LIMGNKTTILIAHRAAMMRHVDNIVVL------NGGR---IVEEGTHDSLL 1279
L + T L+ H V + G R +VE G +
Sbjct: 195 L-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244
|
Length = 261 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 7e-13
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 14/221 (6%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--LEW 382
P+L G L LVG NG GKS++ + P G VL G+ + K L
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 383 LRSQIGLVTQEP--ALLSLSIRDNIAYG-RDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439
LR Q+ V Q+P + I +IA+ R+ + + E ++ A T + + + + Q
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDA--QHFRHQ 132
Query: 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL--DLLMLGRS 497
+ L+ QK +++IA A++L LLLDE T GLD A R A+ ++ G
Sbjct: 133 PIQ---CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD-PAGRTQMIAIIRRIVAQGNH 188
Query: 498 TIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDL 537
II + + LI +D + V+ +G++ G E+ A +
Sbjct: 189 VIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEA 229
|
Length = 271 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-13
Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 27/222 (12%)
Query: 312 RNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD 371
+ E L VP + + L+GRNG+GKS+++ L+ Y P G V +
Sbjct: 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR 82
Query: 372 GENIKNLKLEWLRSQIGL-VTQEPALLSLSIRDNIA-YGRDATLDQIEEAAKIAHAHTFI 429
G ++ L +GL P L+ R+NI GR L + E KI F
Sbjct: 83 G------RVSSL---LGLGGGFNP---ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEF- 129
Query: 430 SSLEKGYETQVGR--AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD--FEAERAV 485
S L + V +G K +L+ A A L P ILL+DEV D F E+
Sbjct: 130 SELGDFIDLPVKTYSSG------MKARLAFAIATALEPDILLIDEVLAVGDAAF-QEKCQ 182
Query: 486 QEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526
+ +LL G++ I+++ S I+ D V+++G++ G
Sbjct: 183 RRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 9e-13
Identities = 62/224 (27%), Positives = 112/224 (50%), Gaps = 30/224 (13%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
+++G L+V + V L+G NG+GK++ ++ P G++LLDG++I L + R
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPM-HKR 72
Query: 385 SQIGL--VTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHA------HTF-ISSLEK 434
+++G+ + QE ++ L++ +NI A L+ + K F I+ L K
Sbjct: 73 ARLGIGYLPQEASIFRKLTVEENI----LAVLEIRGLSKKEREEKLEELLEEFHITHLRK 128
Query: 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML 494
+L+ ++ ++ IARA+ NP LLLDE G+D A + +Q+ + +L
Sbjct: 129 -------SKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181
Query: 495 GRSTIII----ARR-LSLIRNADYIAVMDEGRLFEMGTHDELLA 533
++I R LS+ A YI + EG++ GT +E+ A
Sbjct: 182 RGIGVLITDHNVRETLSITDRA-YI--IYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 9e-13
Identities = 69/249 (27%), Positives = 120/249 (48%), Gaps = 59/249 (23%)
Query: 1066 RPEVLV--LSNFSLKVNGGQTVAVVGVSGSGKSTI---ISLIERFYDPVAGQVLLDGRDL 1120
+PE LV L S + G+T+AVVG SG GKST+ +++IE P G++ G+DL
Sbjct: 23 KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79
Query: 1121 KLYN---LRWLRNHLGLVQQ-----------------EPIIFSTTIRENIIYARHNASEA 1160
+ + LR + +V Q EP++ +T++ S A
Sbjct: 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL-----------SAA 128
Query: 1161 EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
E +E A A + P YD + M + GQ+QRIAIAR ++ + +++ DE
Sbjct: 129 ERREKALAMMAK--VGLRPEHYDRYPHM----FSGGQRQRIAIARALMLDPDVVVADEPV 182
Query: 1221 SSIE-SESSRV------VQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEE 1272
S+++ S ++V +Q+ L + + I+H +++ H+ D ++V+ GR VE+
Sbjct: 183 SALDVSVQAQVLNLMMDLQQELGL------SYVFISHDLSVVEHIADEVMVMYLGRCVEK 236
Query: 1273 GTHDSLLAK 1281
GT + +
Sbjct: 237 GTKEQIFNN 245
|
Length = 327 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-12
Identities = 59/234 (25%), Positives = 119/234 (50%), Gaps = 27/234 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E RN+ S+ + + +S LT+ + AL+G +G GKS+++ ++ F PT G++
Sbjct: 20 LEIRNLTKSFDGQHAVDDVS---LTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG-------RDATLDQIEEAA 420
+LDG ++ ++ + R I ++ Q AL +++ NIA+G + ++ E
Sbjct: 77 MLDGVDLSHVP-PYQRP-INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEML 134
Query: 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
+ H F R L+ Q+ ++++AR++ P +LLLDE G LD +
Sbjct: 135 GLVHMQEF-----------AKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
Query: 481 AERAVQ-EALDLL-MLGRSTIIIAR-RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+Q E +D+L +G + +++ + + A IA+M+ G+ ++G +E+
Sbjct: 184 LRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 20/228 (8%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI----KNLKLEWLRSQI 387
T+PA+ AL G +GSGK+S+I ++ P G + L+G + K + L + +I
Sbjct: 19 FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 388 GLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
G V Q+ L ++R N+ YG + Q ++ ++ L G E + R
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQL---------VALL--GIEHLLDRYPG 127
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
L+ +K +++I RA+L P +LL+DE LD +R + L+ L + I+
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187
Query: 506 SL---IRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKL 550
SL +R AD + V++ G++ G +E+ + D L + E+++ L
Sbjct: 188 SLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFPPWLPREEQSSVL 235
|
Length = 352 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 1e-12
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 23/214 (10%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNLKLE 381
L G L + AL+G +G GKS+ + + R D G V L G+NI +
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 382 --WLRSQIGLVTQEPALLSLSIRDNIAYG------RD-ATLDQ-IEEAAKIAHAHTFISS 431
LR Q+G+V Q+P SI +N+ YG +D A LD+ +E + K A +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQA-------A 133
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491
+ + + + L+L+ Q+ ++ IAR + + P ++LLDE T LD + ++ L
Sbjct: 134 IWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE 193
Query: 492 LMLGRSTIIIARRLSLI-RNADYIAVMDEGRLFE 524
L + I++ + R +D A G L E
Sbjct: 194 LRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 37/229 (16%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI-KNLKLEW--L 383
L G T+ K +A+VG +G GKS++ L+ PT GE+ G+++ K L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 384 RSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443
R +I +V Q P SL+ R + +EE I +T +S+ E+ + A
Sbjct: 91 RQKIQIVFQNP-YGSLNPRKKVG-------QILEEPLLI---NTSLSAAERREKALAMMA 139
Query: 444 GLALTEE------------QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALD 490
+ L E Q+ +++IARA++L+P +++ DE LD +VQ + L+
Sbjct: 140 KVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV----SVQAQVLN 195
Query: 491 LLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
L+M LG S + I+ LS++ + AD + VM GR E GT +++
Sbjct: 196 LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN 244
|
Length = 327 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-12
Identities = 64/269 (23%), Positives = 122/269 (45%), Gaps = 51/269 (18%)
Query: 1054 IELKNV--DFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF--YDPV 1109
IE+KN+ F VL N S + G+ + ++G SG+GKS ++ ++ Y+P
Sbjct: 1 IEVKNLTKKF-----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT 55
Query: 1110 AGQVL----------------------------LDGRDLKLYNL-----RWLRNHLGLVQ 1136
+G+++ L+ ++ +NL R +R + ++
Sbjct: 56 SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIML 115
Query: 1137 QEPIIF--STTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194
Q T+ +N++ A E KEA A + L H TH+ DL+
Sbjct: 116 QRTFALYGDDTVLDNVLEALEEI-GYEGKEAVGRAVDLIEMVQLSHRI-THIAR---DLS 170
Query: 1195 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTT-ILIAHRAA 1253
G+KQR+ +AR + K + L DE + +++ +++++V AL+ + + + +L +H
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230
Query: 1254 MMRHV-DNIVVLNGGRIVEEGTHDSLLAK 1281
++ + D + L G I EEGT D ++A
Sbjct: 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAV 259
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 33/212 (15%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGR----DL------ 1120
VL N SL VN G+ VA+ G SG+GKST++ + Y P +G++L+ DL
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1121 KLYNLRWLRNHLGLVQQ----EPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFIS 1176
++ +R R +G V Q P + + + + R + AR A I
Sbjct: 83 EVLEVR--RKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIP 139
Query: 1177 SLPHGYDTHVGMRGVDLTP-----GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
R L P G++QR+ IAR + + PILLLDE ++S+++ + +VV
Sbjct: 140 E-----------RLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 1232 QEALDTLIMGNKTTILIAHRAAMMRHVDNIVV 1263
E + I I H + V + V+
Sbjct: 189 VELIAEAKARGAALIGIFHDEEVRELVADRVM 220
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 40/234 (17%)
Query: 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129
L ++N +L+V + V+++G +G+GK+T+ + + FY P G +LL G+ ++ L
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE-----GLP 73
Query: 1130 NH----LGLVQ--QEPIIF-STTIRENIIYARHNASEAEV------------KEAARIAN 1170
H +G+V+ Q +F T+ EN++ A+H + + E+ +
Sbjct: 74 GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDR 133
Query: 1171 AHHFISSLPHGYDTHVGMRGV------DLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
A ++ VG+ +L GQ++R+ IAR ++ IL+LDE ++ +
Sbjct: 134 AATWLE--------RVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
Query: 1225 SESSRVVQEALDTLIMGNKTTI-LIAHRAAM-MRHVDNIVVLNGGRIVEEGTHD 1276
+ ++ + E + L + T+ LI H + M D I V+N G + GT +
Sbjct: 186 PKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239
|
Length = 255 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-12
Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 28/227 (12%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E R + + P + L+V + AL+G NG+GKS+++ ++ Y P GE+
Sbjct: 5 LEMRGITKRF---PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 369 LLDGE--NIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHA 425
+DG+ IK+ + + +R IG+V Q L+ +L++ +NI G + + + A
Sbjct: 62 RVDGKEVRIKSPR-DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGL---IDRRQA 117
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKI---------KLSIARAVLLNPSILLLDEVTGG 476
I L + Y GL + + K+ ++ I +A+ +L+LDE T
Sbjct: 118 RARIKELSERY-------GLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 477 LDF-EAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR 521
L EA+ + L G++ I I +L + AD + V+ G+
Sbjct: 171 LTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGK 217
|
Length = 501 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 59/216 (27%), Positives = 106/216 (49%), Gaps = 24/216 (11%)
Query: 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQ 392
T+ + +A++G NGSGKS++ ++ +PT GE+L+D + + +I ++ Q
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQ 94
Query: 393 EPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVG----RAGL--- 445
+P+ SL+ R I+ D L + I +L QVG A
Sbjct: 95 DPS-TSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLR-----QVGLLPDHASYYPH 148
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML------GRSTI 499
L QK +L +ARA++L P +++ DE LD +++ L LML G S I
Sbjct: 149 MLAPGQKQRLGLARALILRPKVIIADEALASLDM----SMRSQLINLMLELQEKQGISYI 204
Query: 500 IIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534
+ + L ++++ +D + VM +G + E G+ ++LA+
Sbjct: 205 YVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 11/209 (5%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
E+ IL G L V + VA+VG +GSGKS+++ ++ DP+ GEV L G+ + L +
Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA 81
Query: 383 ---LRSQ-IGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYE 437
LR++ +G V Q L+ +L+ +N+A L A A A + ++ G
Sbjct: 82 RAALRARHVGFVFQSFHLIPNLTALENVAL--PLELRGESSADSRAGAKALLEAVGLGKR 139
Query: 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRS 497
A L+ E+Q++ ++ARA P +L DE TG LD + + L L R
Sbjct: 140 LTHYPAQLSGGEQQRV--ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG 197
Query: 498 T--IIIARRLSLIRNADYIAVMDEGRLFE 524
T +++ L D + GRL E
Sbjct: 198 TTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 22/206 (10%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
+ G TV + L+G NG+GK++ + ++ +P G +DG ++ E R +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAE-ARRR 79
Query: 387 IGLVTQEPALLS-LSIRDNIAY-------GRDATLDQIEEAAKIAHAHTFISSLEKGYET 438
+G V+ L L+ R+N+ Y D ++EE A + G+ T
Sbjct: 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFST 139
Query: 439 QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLLMLGRS 497
+ K++IARA++ +P +LLLDE T GLD A RA++E + L LG+
Sbjct: 140 G-----------MRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 498 TIIIARRLSLI-RNADYIAVMDEGRL 522
+ + + R D + V+ GR+
Sbjct: 189 ILFSTHIMQEVERLCDRVVVLHRGRV 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 2e-12
Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 8/172 (4%)
Query: 1086 AVVGVSGSGKSTIISLIERFYDPV-----AGQVLLDGRDL--KLYNLRWLRNHLGLVQQE 1138
A++G SG GKST + I R D + G ++ DG D+ K + LR +G+V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 1139 PIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198
P F +I +NI Y + K+ I ++L + + L+ GQ+
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQ 188
Query: 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250
QR+ +AR + ILLLDE +S+++ +++ +++ + L G+ T +++ H
Sbjct: 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSYTIMIVTH 239
|
Length = 286 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 27/211 (12%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD--P-- 1108
I++K+++ Y S + + +L + A +G SG GKST++ + R ++ P
Sbjct: 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGA 60
Query: 1109 -VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYA-----RHNASE 1159
V G+VLLDG DL + +R +G+V Q P F T +IR+N++ N +
Sbjct: 61 RVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKD 120
Query: 1160 AE--VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLD 1217
+ V+++ R AN L + + G L+ GQ+QR+ IAR + +LL+D
Sbjct: 121 LDELVEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173
Query: 1218 EASSSIESESSRVVQEALDTLIMGNKTTILI 1248
E S+++ S+ +++ ++ L TI+I
Sbjct: 174 EPCSALDPISTLAIEDLINEL--KQDYTIVI 202
|
Length = 258 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 62/237 (26%), Positives = 106/237 (44%), Gaps = 10/237 (4%)
Query: 1044 AVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIE 1103
A P +E+K++ Y + V ++ S+ + A++G SG GKST + I
Sbjct: 12 APFPEAKEHILEVKDLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSIN 68
Query: 1104 RFYD--PVA---GQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN 1156
R D P A G++L +G ++ N+ LR +G+V Q+P F +I NI +A
Sbjct: 69 RMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKY 128
Query: 1157 ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLL 1216
A E I ++L + + L+ GQ+QR+ IAR + +LLL
Sbjct: 129 AGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLL 188
Query: 1217 DEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG 1273
DE +S+++ S+ ++E + L I+ + +R D G +VE
Sbjct: 189 DEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 13/190 (6%)
Query: 1065 SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN 1124
SR E ++ S +N G+ + V G +G GK+T++ ++ P +G+V +G L
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 1125 LRWLRNHLGLVQQEPIIFSTTIRENI-IYAR-HNASEAEVKEAARIANAHHFISSLPHGY 1182
RN L L + + EN+ +A H ++ +++A F LP
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-EDLPAAQ 127
Query: 1183 DTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGN 1242
L+ GQ++R+A+AR+ L AP+ +LDE +++++ ++ L +
Sbjct: 128 ----------LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARG 177
Query: 1243 KTTILIAHRA 1252
+L H+
Sbjct: 178 GIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-12
Identities = 72/281 (25%), Positives = 116/281 (41%), Gaps = 66/281 (23%)
Query: 1054 IELKNVDFCYPSRPE---------------------VLVLSNFSLKVNGGQTVAVVGVSG 1092
I KNVD + +P+ VL + N SL + G+ ++G+SG
Sbjct: 1 IRFKNVDIVFGDQPDEALALLDQGKTREEILDRTGLVLGVHNASLDIEEGEICVLMGLSG 60
Query: 1093 SGKSTIISLIERFYDPVAGQVLL--DGRDLKLYN-----LRWLRNH-LGLV-QQEPIIFS 1143
SGKST++ + G VL+ + + N LR LR H + +V QQ ++
Sbjct: 61 SGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPW 120
Query: 1144 TTIRENIIYARHNA--SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201
T+ EN+ + +AE ++ + L D G +L+ G +QR+
Sbjct: 121 RTVEENVAFGLEMQGMPKAERRKRVD---EQLELVGLAQWADRKPG----ELSGGMQQRV 173
Query: 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-------------NKTTILI 1248
+AR APILL+DE S ALD LI KT + +
Sbjct: 174 GLARAFATEAPILLMDEPFS------------ALDPLIRTQLQDELLELQSKLKKTIVFV 221
Query: 1249 AHRA-AMMRHVDNIVVLNGGRIVEEGT-HDSLLAKNGLYVR 1287
+H ++ + I ++ GGRI++ GT + +L YV
Sbjct: 222 SHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 51/201 (25%), Positives = 99/201 (49%), Gaps = 11/201 (5%)
Query: 1057 KNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV-----AG 1111
+N++ Y E L N +L ++ + A++G SG GKST I + R + V G
Sbjct: 28 QNLNLWYG---EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTG 84
Query: 1112 QVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIA 1169
++L +++ K Y++ LR ++G+V Q+P F +I +N+ Y + K I
Sbjct: 85 KILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIV 144
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
+++ + L+ GQ+QR+ IAR + ++L+DE +S+++ S+
Sbjct: 145 EKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
Query: 1230 VVQEALDTLIMGNKTTILIAH 1250
V+E + L + + I++ H
Sbjct: 205 KVEELVQEL-KKDYSIIIVTH 224
|
Length = 271 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 52/211 (24%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW 1127
V L + S V G+ ++G +G+GK+T I +I P +G+VL DG+ L +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--- 68
Query: 1128 LRNHLGLVQQEPIIF-STTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHV 1186
RN +G + +E ++ + + ++Y A +K+ ++ L +
Sbjct: 69 -RNRIGYLPEERGLYPKMKVIDQLVYL---AQLKGLKKEEARRRIDEWLERL--ELSEYA 122
Query: 1187 GMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTI 1246
R +L+ G +Q++ V+ + +L+LDE S ++ + ++++ + L KT I
Sbjct: 123 NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVI 182
Query: 1247 LIAHRAAMMRHV----DNIVVLNGGRIVEEG 1273
L H+ M V D +++LN GR V G
Sbjct: 183 LSTHQ---MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 59/261 (22%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM---ERFYDPTL 365
+ F +V + + +L G +V A + VAL+G +GSGKS+I+ ++ E +
Sbjct: 1 VRFSDVTKRF---GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE--- 54
Query: 366 GEVLLDGENIKNLK-------------LEWLRSQIGLVTQEPALLS-LSIRDNI------ 405
G++ ++GE + ++ L +R++IG+V Q L ++ DN+
Sbjct: 55 GQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVL 114
Query: 406 ------AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459
A ++ ++ A + L G Q+ +++IAR
Sbjct: 115 VLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG---------------QQQRVAIAR 159
Query: 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRST----IIIARRLSLIRN-ADY 513
A+ + P ++L DEVT LD E V E L+++ L +++ + R AD
Sbjct: 160 ALAMRPKVMLFDEVTSALDPE---LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADR 216
Query: 514 IAVMDEGRLFEMGTHDELLAT 534
+ D+GR+ E G DE+
Sbjct: 217 VCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 21/234 (8%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I+ +NV+ Y + LV+ S V G+ ++G +G+GK+T + ++ P AG +
Sbjct: 8 IDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQ----EPIIFSTTIRENI-IYARH-NASEAEVKEAAR 1167
L G + R R +G+V Q +P T+REN+ ++ R+ S A + A
Sbjct: 65 SLCGEPVP-SRARHARQRVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAAR--AL 118
Query: 1168 IANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESES 1227
+ F + L + D VG +L+ G K+R+ +AR ++ + +L+LDE ++ ++ ++
Sbjct: 119 VPPLLEF-AKLENKADAKVG----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA 173
Query: 1228 SRVVQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
++ E L +L+ KT +L H R D + V+ GR + EG +L+
Sbjct: 174 RHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 29/229 (12%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIIS----LIERFY------DPVAGQVLLDG 1117
E++ L+N S + ++G SGSGKST+++ LI+ Y D G +
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 1118 RDL------KLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNASEAEVKEAARIA 1169
+ K+ N + LR + +V Q P +F TI ++I++ + EA ++A
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKS-EAKKLA 156
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
+ L D+++ L+ GQK+R+AIA ++ IL+ DE ++ ++ +
Sbjct: 157 KFYLNKMGLD---DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEH 213
Query: 1230 VVQEALDTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRIVEEGT 1274
+ + + NKT +I H M HV D ++V++ G+I++ GT
Sbjct: 214 EMMQLILDAKANNKTVFVITHT---MEHVLEVADEVIVMDKGKILKTGT 259
|
Length = 320 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-12
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 31/227 (13%)
Query: 1067 PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR 1126
P V L + S GQ A++G +G+GKST++ ++ Y P AG +L+DG++++ +
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT 74
Query: 1127 WLRNH-LGLVQQE-PIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDT 1184
+ ++ QE ++ T+ EN+ + V A + L
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHL------ 128
Query: 1185 HVGMRGVDLTP---------GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL 1235
GVD+ P GQ+Q + IA+ + +NA ++ DE +SS+ + + +
Sbjct: 129 -----GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI 183
Query: 1236 DTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRIVEEGTHDSL 1278
L + + ++HR M + D I V GR V T D +
Sbjct: 184 RELRAEGRVILYVSHR---MEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 55/237 (23%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I NV SY ++ +L L +P +++G NG+GKS+++ +M R GE+
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR---------DATLDQIEE 418
+DG + + + L ++ ++ QE + S L++RD + +GR I E
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
A + H + L Y + L+ Q+ + IA + + +LLDE LD
Sbjct: 119 AIEYLH----LEDLSDRYLDE-------LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
Query: 479 FEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELL 532
+ + + L L LG++ +++ ++ +D+I + G++ + G+ DE++
Sbjct: 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 4e-12
Identities = 49/204 (24%), Positives = 100/204 (49%), Gaps = 12/204 (5%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+I++ N+ F Y ++ +L S+++ + A++G SG GKST + + R + + +
Sbjct: 7 AIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESE 62
Query: 1113 VLLDGR----DLKLY----NLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKE 1164
V ++GR + +Y NL LR + +V +P +F ++ +N+ Y E
Sbjct: 63 VRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLE 122
Query: 1165 AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
I + + L + +DL+ GQ+QR+ IAR + +LL+DE ++
Sbjct: 123 IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
Query: 1225 SESSRVVQEALDTLIMGNKTTILI 1248
+S V+ + +L + ++ T++I
Sbjct: 183 PIASMKVESLIQSLRLRSELTMVI 206
|
Length = 261 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 4e-12
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 21/218 (9%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENI--KNLKLEWLR 384
L + + A++G +G GKS+ I + R + T G++L +NI K+ +E LR
Sbjct: 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104
Query: 385 SQIGLVTQEPALLSLSIRDNIAYG-------RDATLDQIEEAAKIAHAHTFISSLEKGYE 437
+ +G+V Q+P SI DN+ YG TLD+I E + + A + ++ ++
Sbjct: 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKS-LRGAAIWDELKDRLHD 163
Query: 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRS 497
G +G Q+ +L IAR + + P ++L+DE T LD + V+E + L S
Sbjct: 164 NAYGLSG-----GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218
Query: 498 TIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDELLAT 534
II+ + R +D A G + E D++ +
Sbjct: 219 IIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256
|
Length = 271 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 61/222 (27%), Positives = 105/222 (47%), Gaps = 34/222 (15%)
Query: 1063 YPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL 1122
Y +P L + +L + G+ + V+G SG GK+T+++LI F G + LDG+ ++
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
Query: 1123 YNLRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHG 1181
G+V Q E ++ +++N+ + A V++ R+ AH +
Sbjct: 68 PGA-----ERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKK---- 115
Query: 1182 YDTHVGMRGVD------LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL 1235
VG+ G + L+ GQ+QR+ IAR + N +LLLDE ++++ + +Q L
Sbjct: 116 ----VGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL 171
Query: 1236 DTLIMGN-KTTILIAH---RAAMMRHVDNIVVL--NGGRIVE 1271
L K +LI H A M +V+L GR+VE
Sbjct: 172 LKLWQETGKQVLLITHDIEEAVFM--ATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 22/221 (9%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSII-PLMERF-YDPTLGEVLLDGENIKNLKL 380
+ IL G LTV + A++G NGSGKS++ + Y+ T G +L G+++ L+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 381 -EWLRSQIGLVTQEP-----ALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEK 434
E R+ + L Q P +R + R A + EE + + +
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSA---RGEEPLDLLDFLKLLKAKLA 128
Query: 435 GYETQVGRAGLALTE-----EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
++ E E+K + I + LL P + +LDE+ GLD +A + V E +
Sbjct: 129 LLGMDEEFLNRSVNEGFSGGEKK-RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187
Query: 490 DLLML-GRSTIIIA---RRLSLIRNADYIAVMDEGRLFEMG 526
+ L RS +II R L+ I+ DY+ V+ +GR+ + G
Sbjct: 188 NRLREPDRSFLIITHYQRLLNYIK-PDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 5e-12
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 15/214 (7%)
Query: 1042 SSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISL 1101
+ AV VY ++ ++ Y L N +L + + A++G SG GKST I
Sbjct: 4 TEAVMKQEVY---QINGMNLWYGQHH---ALKNINLSIPENEVTAIIGPSGCGKSTFIKT 57
Query: 1102 IERFYD-----PVAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYAR 1154
+ + G++ +G ++ +L LR ++G+V Q+ F +I +N+ Y
Sbjct: 58 LNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGP 117
Query: 1155 HNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL 1214
K+ I +L + + + L+ GQ+QR+ IAR + N +L
Sbjct: 118 RIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVL 177
Query: 1215 LLDEASSSIESESSRVVQEALDTLIMGNKTTILI 1248
L+DE +S+++ S+R ++E + L + K TI+I
Sbjct: 178 LMDEPTSALDPVSTRKIEELI--LKLKEKYTIVI 209
|
Length = 259 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 5e-12
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDL--KLYN 1124
+ + S+ A++G SG GKST++ I R +D V G++LLD D+ + +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 1125 LRWLRNHLGLVQQEPIIF-STTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYD 1183
+R +G+V Q+P F + +I +N+I EA I + +L
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK 1243
+ ++L+ GQ+QR+ IAR + ++L+DE +S+++ S+ ++E ++ L
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKY 198
Query: 1244 TTILIAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
T I++ H V D G +VE G
Sbjct: 199 TIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229
|
Length = 252 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 5e-12
Identities = 53/214 (24%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW--- 1127
VL N S + G+ +A+VG SGSGKST++ L+ P +G V+ +G+ + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1128 LRNH-LGLVQQ-EPIIFSTTIRENI----IYARHNASEAEVKEAARIANAHHFISSLPHG 1181
LRN LG + Q ++ T EN+ + + +E + A ++++ G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR-------ALEMLAAV--G 134
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
+ R +L+ G++QR+AIAR ++ N ++L DE + ++++ ++ + + L L
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 1242 NKTTIL-IAHRAAMMRHVDNIVVLNGGRIVEEGT 1274
T L + H + + + + + GR+ E +
Sbjct: 195 QGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228
|
Length = 233 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 1066 RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN- 1124
VL+N SL + G+TVA++G SG GKST+ L+ P G V G L N
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 1125 --LRWLRNHLGLVQQEPIIF---STTIRENIIYA-RHNASEAEVKEAARIANAHHFISS- 1177
+ R + +V Q+ I T+RE I RH S + +A R+A A + +
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS---LDKAERLARASEMLRAV 138
Query: 1178 -LPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ-EAL 1235
L D+ + R L+ GQ QR+ +AR + +L+LDEA S+++ V+Q +
Sbjct: 139 DLD---DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD----LVLQAGVI 191
Query: 1236 DTLIMGNKTT----ILIAHRAAMMRH-VDNIVVLNGGRIVEEGT 1274
L + + I H ++ ++V++ G+IVE
Sbjct: 192 RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
Length = 268 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 56/219 (25%), Positives = 110/219 (50%), Gaps = 15/219 (6%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL-R 1126
++ L SL +N G+ V ++G +G+GK+T++ + +G+++ DG+D+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 1127 WLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTH 1185
+R + +V + +FS T+ EN+ A + +E RI + P ++
Sbjct: 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWVYEL---FPRLHERR 131
Query: 1186 VGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTL--IMGNK 1243
+ R ++ G++Q +AI R ++ +LLLDE S + + ++Q+ DT+ +
Sbjct: 132 I-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQG 187
Query: 1244 TTILIAHRAA--MMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
TI + + A ++ D VL G +V E T D+LLA
Sbjct: 188 MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-12
Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 29/237 (12%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
SIE+ N+ S VL++ SL + GQ VA++G SGSGK+T++ +I +G
Sbjct: 2 SIEIANIK---KSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYA------RHNASEAEVKEA 1165
+ G D+ + R +G V Q +F T+ +NI + R + A +K
Sbjct: 59 IRFHGTDVSRLHAR--DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAK 116
Query: 1166 A----RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
+ H P L+ GQKQR+A+AR + ILLLDE
Sbjct: 117 VTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVALARALAVEPQILLLDEPFG 165
Query: 1222 SIESESSRVVQEALDTLIMGNK-TTILIAH-RAAMMRHVDNIVVLNGGRIVEEGTHD 1276
+++++ + ++ L L K T++ + H + M D +VV++ G I + GT D
Sbjct: 166 ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPD 222
|
Length = 353 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 6e-12
Identities = 58/237 (24%), Positives = 109/237 (45%), Gaps = 39/237 (16%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
S+ L+NV + +V++ + +L ++ G+ V VG SG GKST++ +I D +G
Sbjct: 3 SVTLRNV---TKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIY----ARHNASEAE--VKEA 1165
+ + + ++ ++ +G+V Q ++ ++ EN+ + A E V +
Sbjct: 60 LFIGEK--RMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
A + H + P L+ GQ+QR+AI R ++ + LLDE S++++
Sbjct: 118 AEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 1226 --------ESSRVVQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVVLNGGRIVEEG 1273
E SR+ + +T I + H + M D IVVL+ GR+ + G
Sbjct: 167 ALRVQMRIEISRLHKRL-------GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 9e-12
Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 25/263 (9%)
Query: 309 IEFRNVYFSYLSRPEIPI----LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
I F+ V Y + + P L +++P+ VA++G GSGKS+++ + PT
Sbjct: 3 ITFQKVEHRY--QYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT 60
Query: 365 LGEVLLDGENI----KNLKLEWLRSQIGLVTQ--EPALLSLSIRDNIAYGRDATLDQIEE 418
G V + I KN KL+ LR ++G+V Q E L ++ +I +G E+
Sbjct: 61 SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED 120
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
A + A + L E + R+ L+ Q +++IA + + P +L+LDE T GLD
Sbjct: 121 AKQKAREMIELVGLP---EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
Query: 479 FEAERAVQEALDLLML-----GRSTIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELL 532
+ +E +++ G +T+++ + R AD I VM +G +F GT E+
Sbjct: 178 ---PKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234
Query: 533 ATGDLYAEL-LKCEEAAKLPRRM 554
A D + L E K R +
Sbjct: 235 ADPDELEAIGLDLPETVKFKRAL 257
|
Length = 290 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 61/238 (25%), Positives = 113/238 (47%), Gaps = 26/238 (10%)
Query: 309 IEFRNVYFSYLSRPE---IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL 365
I+ +NV + Y S E L L V + + ++GRNGSGKS+I M P+
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 366 GEVLLDGENIKNLKLEW-LRSQIGLVTQEP--ALLSLSIRDNIAYG-------RDATLDQ 415
G+V +DG + + + W +R++ G+V Q P +++ + +++A+G + ++
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 416 IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475
++E+ K + + + + + L+ QK +++IA + + P ++ DE T
Sbjct: 125 VDESLKKVGMYEY-----RRHAPHL------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 476 GLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LD R V + L G + I+I + AD I VMD G++ GT E+
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 69/275 (25%), Positives = 121/275 (44%), Gaps = 38/275 (13%)
Query: 309 IEFRNVYFSYLSRPEIPI----LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF---Y 361
I+F NV Y+ P P+ L + VALVG GSGKS+ LM+ F
Sbjct: 3 IKFENV--DYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKST---LMQHFNALL 57
Query: 362 DPTLGEVLLDGENI------KNLKLEWLRSQIGLVTQ--EPALLSLSIRDNIAYGR---D 410
P+ G + + G +I KNLK LR ++ LV Q E L ++ ++ +G
Sbjct: 58 KPSSGTITIAGYHITPETGNKNLKK--LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFG 115
Query: 411 ATLDQIEEAAKIAHAHTFISSLEK-GYETQV-GRAGLALTEEQKIKLSIARAVLLNPSIL 468
+ D+ +E A + L+K G + ++ L+ Q +++IA + P IL
Sbjct: 116 FSEDEAKEKA--------LKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEIL 167
Query: 469 LLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526
LDE GLD E + + + D G + I++ + + AD + V++ G+L +
Sbjct: 168 CLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHA 227
Query: 527 THDELLATGD-LYAELLKCEEAAKLPRRMPVRNYK 560
+ E+ + + L L ++ ++ +K
Sbjct: 228 SPKEIFSDKEWLKKHYLDEPATSRFASKLEKGGFK 262
|
Length = 287 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 53/204 (25%), Positives = 94/204 (46%), Gaps = 9/204 (4%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL---KLEW 382
+L L + + V L G +GSGK++++ L+ G + + G+ + +L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 383 LRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
LR IG + Q LL L+ R N+ + + A + ++ G +
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALE-LQPNLSYQEARERARAMLEAV--GLGDHLD 136
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGR-STII 500
L+ QK +++IARA++ P ++L DE T LD ++ R V E + L + TI+
Sbjct: 137 YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTIL 196
Query: 501 IARRLSLIRN-ADYIAVMDEGRLF 523
I + I + AD I M++G+L
Sbjct: 197 IVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
E L+G L + V ++G NG+GKS+++ + PT G++L+DG ++ +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 383 LRSQIGLVTQEPAL---LSLSIRDNIAY----GRDATLDQIEEAAKIAHAHTFISSLEKG 435
+ + V Q+P L+I +N+A G+ L + + ++ L G
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137
Query: 436 YETQVG-RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
E ++ R GL L+ Q+ LS+ A L P ILLLDE T LD
Sbjct: 138 LENRLSDRIGL-LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
|
Length = 263 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 10/202 (4%)
Query: 341 ALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKNLKLE--WLRSQIGLVTQE 393
AL+G +G GK++ + + R +D T G +LLDG++I +++ +R ++G+V Q+
Sbjct: 34 ALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQK 93
Query: 394 P-ALLSLSIRDNIAYG-RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451
P ++S+ DN+ G + A + + ++A ++L + ++ L+ Q
Sbjct: 94 PNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153
Query: 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL-SLIRN 510
+ +L IARA+ + P ILL+DE T LD + +++ + L + II+ + R
Sbjct: 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARV 213
Query: 511 ADYIAVMDEGRLFEMGTHDELL 532
+D + G L E G D+L
Sbjct: 214 SDTTSFFLVGDLVEHGPTDQLF 235
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-11
Identities = 56/260 (21%), Positives = 106/260 (40%), Gaps = 42/260 (16%)
Query: 1032 DRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVS 1091
+ V +E +NV Y L+L + S +++ G +A+VG +
Sbjct: 303 GKPLAFRFPPPGKRLGKLV---LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPN 357
Query: 1092 GSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENII 1151
G+GKST++ L+ P++G V + G +K+ R+ L + ++
Sbjct: 358 GAGKSTLLKLLAGELGPLSGTVKV-GETVKIGYFDQHRDELDPD------------KTVL 404
Query: 1152 YARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVD-------LTPGQKQRIAIA 1204
++ R A F G G D L+ G+K R+ +A
Sbjct: 405 EELSEGFPDGDEQEVR-AYLGRF------------GFTGEDQEKPVGVLSGGEKARLLLA 451
Query: 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVV 1263
+++L+ +LLLDE ++ ++ ES ++EAL T +L++H R + R I +
Sbjct: 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATRIWL 508
Query: 1264 LNGGRIVEEGTHDSLLAKNG 1283
+ EG ++ L +
Sbjct: 509 VEDKVEEFEGGYEDYLEQKK 528
|
Length = 530 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-11
Identities = 56/250 (22%), Positives = 115/250 (46%), Gaps = 28/250 (11%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I + + S V L + +L V G+ A++G +G+GKST++ ++ ++P G +
Sbjct: 6 ISMAGIG---KSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 1114 LLDGRDL-KLYNLRWLRNHLGLVQQE-PIIFSTTIRENIIYARHNASE------AEVKEA 1165
++ + KL + + +G++ QE +I T+ EN+ RH + + +E
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM 122
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
A L D V +L+ KQ + IA+ ++ +A ++++DE +SS+ +
Sbjct: 123 RVRAAMMLLRVGLKVDLDEKVA----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTN 178
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGG-----RIVEEGTHDSLL 1279
+ + ++ L + I+H+ A +R + D V+ G +V + ++D +
Sbjct: 179 KEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDI- 237
Query: 1280 AKNGLYVRLM 1289
VRLM
Sbjct: 238 ------VRLM 241
|
Length = 510 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 57/225 (25%), Positives = 108/225 (48%), Gaps = 30/225 (13%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTII----------SLIERFYDPVAGQVLLDGRDLK 1121
L L ++ G+ VA++G SGSGKST++ + + V +GR +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 1122 LYNLRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNAS---EAEVKEAARIANAHHFISS 1177
++R R + G + QQ ++ ++ EN++ ++ R + +
Sbjct: 80 --DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTR-EQKQRALQA 136
Query: 1178 LPHGYDTHVGM------RGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
L T VGM R L+ GQ+QR+AIAR +++ A ++L DE +S++ ES+R+V
Sbjct: 137 L-----TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191
Query: 1232 QEALDTLIMGNKTTILIA-HRAA-MMRHVDNIVVLNGGRIVEEGT 1274
+ L + + T+++ H+ +R+ + IV L G + +G+
Sbjct: 192 MDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 55/235 (23%)
Query: 1065 SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG------R 1118
R E + S+ S +N G+ + + G +G+GK+T++ ++ P AG+V G R
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 1119 DLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI-----IYARHNASEAEVKEAARIANAHH 1173
+ L +L + G+ T EN+ + N A + EA
Sbjct: 71 ESYHQALLYLGHQPGIKT------ELTALENLHFWQRFHGSGN--AATIWEALAQVGLAG 122
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
LP G L+ GQ++R+A+AR+ L AP+ +LDE ++++ E ++
Sbjct: 123 LE-DLPVGQ----------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL-- 169
Query: 1234 ALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288
T ++ AH G IV TH L + RL
Sbjct: 170 ----------TALMAAH-------------AAQGGIVLLTTHQPLPIASAQIRRL 201
|
Length = 209 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 64/242 (26%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
++ R V F+ R I LTVP K A++G +G GK++++ L+ P GE+
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 369 LLDGENIKNL---KLEWLRSQIGLVTQEPALLS-LSIRDNIAYG-RDATLDQIEEAAKIA 423
L DGENI + +L +R ++ ++ Q AL + +++ DN+AY R+ T Q+ +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAP--LL 120
Query: 424 HAHTFISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
H+ T + LE VG G A L+ + ++ARA+ L P +++ DE G
Sbjct: 121 HS-TVMMKLEA-----VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 478 DFEAERAVQEALDLL--MLGRSTIIIARRL-SLIRNADYIAVMDEGRLFEMGTHDELLAT 534
D + + + L LG + ++++ + ++ AD+ ++ + ++ G+ L A
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234
Query: 535 GD 536
D
Sbjct: 235 PD 236
|
Length = 269 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 2e-11
Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 62/218 (28%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E R + + + L G L+V + AL+G NG+GKS+++ ++ Y P GE+
Sbjct: 1 LELRGITKRF---GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 369 LLDGE--NIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAH 426
L+DG+ + + + + R+ I +V Q
Sbjct: 58 LVDGKEVSFASPR-DARRAGIAMVYQ---------------------------------- 82
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL-DFEAERAV 485
L++ E Q ++ IARA+ N +L+LDE T L E ER
Sbjct: 83 ------------------LSVGERQMVE--IARALARNARLLILDEPTAALTPAEVERLF 122
Query: 486 QEALDLLMLGRSTIIIARRLS-LIRNADYIAVMDEGRL 522
+ L G + I I+ RL + AD + V+ +GR+
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-11
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 22/216 (10%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
L L+V + V L+G +G GK++++ ++ T G + G +I L + +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR 76
Query: 386 QIGLVTQEPALL-SLSIRDNIAYG-RDATLDQIEEAAKIAHAHTFI--SSLEKGYETQVG 441
G+V Q AL +L++ DNIAYG ++ + + E A ++A + E+ Y Q
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-- 134
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF-EAERAVQEALDLLM-LGRSTI 499
L+ Q+ ++++ARA+ +P +LLLDE LD E E L LG +TI
Sbjct: 135 -----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTI 189
Query: 500 IIA----RRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
++ LS+ AD I VM+ G + ++GT E+
Sbjct: 190 MVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-11
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 13/228 (5%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I+ V SY + + LS T+ + L+G NG+GKS+I ++ P G++
Sbjct: 5 IDLVGVSKSYGDKVVVNDLS---FTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNI-AYGRDATLDQIEEAAKIAHAH 426
+ GE + + + R IG+V Q L ++R+N+ +GR + E A I
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
F + LE + +V L+ K +L++ARA++ +P +L+LDE T GLD A +
Sbjct: 121 EF-ARLESKADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175
Query: 487 EAL-DLLMLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELL 532
E L LL G++ ++ + R D + V++ GR G L+
Sbjct: 176 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 62/211 (29%), Positives = 101/211 (47%), Gaps = 24/211 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I F +V +YL + F++ P + A L G +G+GKS+++ L+ P+ G++
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMR-PGEMAF-LTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 369 LLDGENIKNLK---LEWLRSQIGLVTQEPALL-SLSIRDNIAYG---RDATLDQIEEAAK 421
G +I LK + +LR QIG++ Q+ LL ++ DN+A A+ D I
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
A + K + Q L+ E+Q++ IARAV+ P++LL DE TG LD
Sbjct: 120 AALDKVGLLDKAKNFPIQ-----LSGGEQQRV--GIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 482 E----RAVQE----ALDLLMLGRSTIIIARR 504
R +E + +LM +I+RR
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRR 203
|
Length = 222 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 2e-11
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 43/203 (21%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWLRS 385
+ V A + V + G G+G++ + + P GE+ LDG+ + + +R+
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 386 QIGLVTQEP----ALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
I V ++ +L LS+ +NIA +SSL G Q
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA----------------------LSSLLSGGNQQ-- 111
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLLMLGRSTII 500
K+ +AR + +P +L+LDE T G+D A+ + + +L G++ ++
Sbjct: 112 ------------KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLL 159
Query: 501 IARRLS-LIRNADYIAVMDEGRL 522
I+ L L+ D I VM EGR+
Sbjct: 160 ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 18/230 (7%)
Query: 1076 SLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLV 1135
+ KV G+ +G +G+GK+T I ++ P +G + G D+ + R +R +G+V
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRSIGIV 71
Query: 1136 QQEPIIFST-TIRENI-IYAR-HNASEAEVKEAARIANAHHFISSLPHGYDTHVG-MRGV 1191
Q + T REN+ + R + + E +E R L D VG G
Sbjct: 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEE--RAEELLELFE-LGEAADRPVGTYSG- 127
Query: 1192 DLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH- 1250
G ++R+ IA ++ +L LDE ++ ++ + R + + + L T +L H
Sbjct: 128 ----GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY 183
Query: 1251 --RAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYGKGLR 1298
A + D I +++ GRI+ EGT + L + G +P + L+
Sbjct: 184 MEEADKL--CDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLK 231
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 35/228 (15%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ + FSY +P F LT + A+VG +GSGKS+++ L+ F P G V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATL---DQIEEAAKIAH 424
L++G ++ + ++ QE L + L++ N+ G L + +A ++A
Sbjct: 56 LINGVDVTA--APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
A ++ LEK R L+ ++ ++++AR ++ + +LLLDE LD A R
Sbjct: 114 ARVGLAGLEK-------RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD-PALR- 164
Query: 485 VQEALDLLMLGRSTIIIARRLSLI----------RNADYIAVMDEGRL 522
E LDL+ + +++++ R A + +D GR+
Sbjct: 165 -AEMLDLV----LDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 3e-11
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 35/247 (14%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----P 1108
I K+V Y L SL + A++G SG GKST + + R D
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 1109 VAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNAS-------- 1158
+ G++ +G+++ +L LR +G+V Q+P F ++ +N+ Y A
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 1159 ---EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILL 1215
E +K+AA + + + GQ+QRI IAR + ++L
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAF-----------SGGQQQRICIARALAVRPKVVL 170
Query: 1216 LDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEG- 1273
LDE +S+++ SS ++E L L T I++ H + D L G ++E G
Sbjct: 171 LDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGP 229
Query: 1274 THDSLLA 1280
T + +A
Sbjct: 230 TEEMFIA 236
|
Length = 251 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 15/230 (6%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I+ + Y + L L P + + L+G +G+GKSS++ ++ P G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 369 LLDGENIK------NLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAK 421
+ G + + + LR +G+V Q+ L L++++N+ L ++ A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
A A + L + R L L+ Q+ +++IARA+++ P +LL DE T LD E
Sbjct: 120 -ARAEKLLKRLR--LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
Query: 482 ERAVQEAL-DLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529
+ + +L G + +I+ + + R A + M+ G + E G
Sbjct: 177 TAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 26/237 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP---TL 365
+EF++V F+Y + P L+ ++P AL+G NGSGKS+I L+ P
Sbjct: 6 VEFKHVSFTYPDSKK-PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 366 GEVLLDGENIKNLKLEW-LRSQIGLVTQEP--ALLSLSIRDNIAYGRDATLDQIEEAAKI 422
++ +DG + K W +R ++G+V Q P + ++ D++A+G + E KI
Sbjct: 65 SKITVDGITL-TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI 123
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEE------QKIKLSIARAVLLNPSILLLDEVTGG 476
L VG +E QK +++IA + + P I++LDE T
Sbjct: 124 VR-----DVLA-----DVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 477 LDFEAERAVQEALDLLMLGRS-TII-IARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LD + + + + L + T+I I + AD + V+D+G+L G+ E+
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 59/227 (25%), Positives = 107/227 (47%), Gaps = 38/227 (16%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL---RWL 1128
L++ S V+ G+ ++G +G+GK+T++ +I P G+VL DG D L L R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG-DTDLTKLPEHRIA 79
Query: 1129 RNHLGLVQQEPIIF-STTIREN-------------IIYARHNASEA----EVKEAARIAN 1170
R +G Q+P +F + T+REN ++AR A E E+ + +
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
+++L L+ GQKQ + I ++ ++ +LLLDE + + +
Sbjct: 140 ERDRLAAL--------------LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEK 185
Query: 1231 VQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHD 1276
E L +L G + +++ H +R + D + VL+ G ++ EG+ D
Sbjct: 186 TAELLKSL-AGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231
|
Length = 249 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 54/227 (23%), Positives = 111/227 (48%), Gaps = 25/227 (11%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--------- 376
+L G L A ++++G +GSGKS+ + + P+ G + ++GE I+
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 377 ----NLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISS 431
+L+ LR+++G+V Q L S +++ +N+ L + A I A +++
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEA-IERAEKYLAK 139
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-- 489
+ + A L+ ++Q++ +IARA+ + P ++L DE T LD E V E L
Sbjct: 140 VGIAEKADAYPAHLSGGQQQRV--AIARALAMEPEVMLFDEPTSALDPE---LVGEVLKV 194
Query: 490 --DLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
DL GR+ +++ + R+ + ++ + +G++ E G +++
Sbjct: 195 MQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 21/248 (8%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-- 382
P+L+ L++ + V L+GR+G GKS++ L+ P G V G+++ L +
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 383 -LRSQIGLVTQE-PALLS--LSIRDNIAYG-RDAT-LDQIEEAAKIAHAHTFI---SSLE 433
R + LV Q+ P+ ++ +++R I R T LD+ E+ A+IA + S
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDA 144
Query: 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493
Q+ L Q+I +IARA+ + P +++LDE LD + + E L L
Sbjct: 145 DKLPRQLSGGQL-----QRI--NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQ 197
Query: 494 --LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKL 550
G + + I L L+ +AVMD+G++ E +LL+ L+ +
Sbjct: 198 QAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNLQSAVLPEH 257
Query: 551 PRRMPVRN 558
P R +
Sbjct: 258 PVRRSITT 265
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 12/166 (7%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
L G LT+ + ++L+G +G GKS+++ L+ PT G V+L+G+ I + +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 387 IGLVTQEPALLS-LSIRDNIAYGRDATLDQI--EEAAKIAHAHTFISSLEKGYETQVGRA 443
+V Q +LL L++R+NIA D L + E I H + L + + + G+
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ- 114
Query: 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
L+ K +++IARA+ + P +LLLDE G LD +QE L
Sbjct: 115 ---LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 5e-11
Identities = 71/293 (24%), Positives = 112/293 (38%), Gaps = 35/293 (11%)
Query: 251 VTALFAVILSGLG-LNQAATNFYSFDQGRIAAYRLYEMISRSSS-----TTNYDGNTLPS 304
++A +L G L + Q +IA RL + R + + N L
Sbjct: 270 ISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLL 329
Query: 305 VH----GNIEFRNVYFSYLSRPEIPILSGFYL-----TVPAKKAVALVGRNGSGKSSIIP 355
H +IE ++V+ + GF L + V +VG NG GKS++
Sbjct: 330 AHDKSVDSIELKDVHMNP---KAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK 386
Query: 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQ 415
L Y P GE+LLDG + + R + + L I + G A+LD
Sbjct: 387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD--EGEHASLDN 444
Query: 416 IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE----QKIKLSIARAVLLNPSILLLD 471
A ++ LE + ++ G + T Q+ +L++ A L + ILL D
Sbjct: 445 ---------AQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD 495
Query: 472 EVTGGLDFEAERAVQEAL--DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRL 522
E D +R E L DL G++ III+ AD I + G +
Sbjct: 496 EWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-11
Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 29/236 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ LKN+ + S V+ N +L + G V ++G SG GK+T++ L+ P GQ+
Sbjct: 7 VVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 1114 LLDGRDLKLYNLRWLRNH-LGLVQQEPIIFS-TTIRENIIYA--RHNASEAE----VKEA 1165
+DG D+ R ++ + +V Q +F ++ EN+ Y + E VKEA
Sbjct: 64 FIDGEDV---THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEA 120
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVD-LTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
+ + F R VD ++ GQ+QR+A+AR ++ +LL DE S+++
Sbjct: 121 LELVDLAGF------------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
Query: 1225 SESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSL 1278
+ R ++E + L N T++ + H + V D ++V+N G+I++ G+ L
Sbjct: 169 ANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 7e-11
Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 36/222 (16%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
V N ++++ G A++G +G GKST++ + R P G V LDG ++ Y + +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1131 HLGLVQQEPII-FSTTIRENIIYARH----------NASEAEVKEAARIANAHHFISSLP 1179
+GL+ Q T++E + R+ E V +A +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGI-------- 133
Query: 1180 HGYDTHVGMRGVD-LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTL 1238
TH+ + VD L+ GQ+QR IA V+ + I+LLDE ++ ++ + E L L
Sbjct: 134 ----THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSEL 189
Query: 1239 IMGNKTTILIAHRAAMM-------RHVDNIVVLNGGRIVEEG 1273
T+ AA++ R+ +++ L G+IV +G
Sbjct: 190 NREKGYTL-----AAVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 41/230 (17%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
L S + G+ V +G +G+GKST + +I + P +G V + G D+ L N + ++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV-LQNPKEVQR 75
Query: 1131 HLG-LVQQEPIIFSTTIRENIIYARHNASEAEVKEAA---RIA----------NAHHFIS 1176
++G L + P+ +RE Y + A +K R+ H I
Sbjct: 76 NIGYLPEHNPLYLDMYVRE---YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIG 132
Query: 1177 SLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALD 1236
L GY +QR+ +A+ ++ + +L+LDE ++ ++ ++ +
Sbjct: 133 QLSKGY---------------RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK 177
Query: 1237 TLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRIVEEGTHDSLLAKN 1282
I +KT IL H +M+ V D ++++N G+IV + D L A N
Sbjct: 178 N-IGKDKTIILSTH---IMQEVEAICDRVIIINKGKIVADKKLDELSAAN 223
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 8e-11
Identities = 60/218 (27%), Positives = 114/218 (52%), Gaps = 23/218 (10%)
Query: 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIF 1142
Q A +G +G+GK+T +S++ P +G VL+ G+D++ NL +R LG+ Q I+F
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNILF 1015
Query: 1143 -STTIRENII-YAR---HNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197
T+ E+I+ YA+ + EA+++ A + + + L H + DL+ G
Sbjct: 1016 HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED-----TGLHHKRNE----EAQDLSGGM 1066
Query: 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH 1257
++++++A + +A +++LDE +S ++ S R + + L G +T I+ H
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSG-RTIIMSTHHMDEADL 1125
Query: 1258 V-DNIVVLNGGRIVEEGTHDSLLAKN----GLYVRLMQ 1290
+ D I +++ GR+ GT L KN G Y+ L++
Sbjct: 1126 LGDRIAIISQGRLYCSGT--PLFLKNCFGTGFYLTLVR 1161
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 50/225 (22%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
E+ L G T+ + V +G NG+GK++ + ++ PT GEV + G + ++
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF 92
Query: 383 LRSQIGLVTQEPALLS--LSIRDNIAYGRD----------ATLDQIEEAAKIAHA-HTFI 429
LR +IG+V + L L + D+ LD++ E + T +
Sbjct: 93 LR-RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPV 151
Query: 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
L G Q+++ IA A+L P IL LDE T GLD A+ ++ L
Sbjct: 152 RQLSLG---------------QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196
Query: 490 DLLMLGRSTIII------------ARRLSLIRNADYIAVMDEGRL 522
R T ++ ARR+ +I D+GRL
Sbjct: 197 KEYNRERGTTVLLTSHYMKDIEALARRVLVI---------DKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 9e-11
Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 11/252 (4%)
Query: 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
G + +++ Y +L ++ + V L+GR GSGKS+++ R + T G
Sbjct: 1 GQMTVKDLTAKYTEGGN-AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNI-AYGRDATLDQIEEAAKIAHA 425
++ +DG + ++ L+ R G++ Q+ + S + R N+ YG+ + EE K+A
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSD----EEIWKVAEE 114
Query: 426 ---HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
+ I + + G L+ K + +AR+VL ILLLDE + LD
Sbjct: 115 VGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174
Query: 483 RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542
+ +++ L + I+ R+ + V++E ++ + + +LL + + +
Sbjct: 175 QVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAI 234
Query: 543 KCEEAAKL-PRR 553
+ KL PRR
Sbjct: 235 SPSDRLKLFPRR 246
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 9e-11
Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 59/246 (23%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKS-TIISLIERFYDP----VAGQVLLDGRDLKLY-- 1123
V+++ SL++ G+T+A+VG SGSGKS T +S++ P +G + G L L+
Sbjct: 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL-LHAS 82
Query: 1124 --NLRWLR-NHLGLVQQEPIIFSTTIRENIIYARHNASE--AEV--------KEAAR--- 1167
LR +R N + ++ QEP++ + H + EV +EAAR
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMVSLNPL--------HTLEKQLYEVLSLHRGMRREAARGEI 134
Query: 1168 --------IANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
I A ++ PH L+ G++QR+ IA +L +L+ DE
Sbjct: 135 LNCLDRVGIRQAAKRLTDYPH-----------QLSGGERQRVMIAMALLTRPELLIADEP 183
Query: 1220 SS----SIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
++ S++++ ++++E L MG + I H +++R + D + V+ GR VE+
Sbjct: 184 TTALDVSVQAQILQLLRELQQELNMG---LLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
Query: 1275 HDSLLA 1280
+L +
Sbjct: 241 AATLFS 246
|
Length = 529 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 2e-10
Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 15/214 (7%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENIKNLKLEWL 383
+L L + A + +AL+G++G GK++++ + F G + + ++ +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77
Query: 384 RSQIGLVTQEPALLS-LSIRDNIAYG-RDATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
+ + L+ Q AL L + DN+A+G R + + + A ++A A + +
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA----- 132
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTI 499
L+ + +++IARA+ + P +LLLDE LD ++E + L L TI
Sbjct: 133 HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192
Query: 500 IIAR--RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ + + AD +M +GRL G L
Sbjct: 193 LCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 29/203 (14%)
Query: 331 YLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENI--KNLKLEWL 383
+ +P K AL+G +G GKS+++ + R D G VL DG ++ + +
Sbjct: 33 FCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV 92
Query: 384 RSQIGLVTQEPALLSLSIRDNIAYGR-----DATLDQIEEAAKIAHAHTFISSLEKGY-- 436
R +IG+V Q+P SI +NIA+G +D++ E SL K
Sbjct: 93 RRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVE-----------RSLRKAAVW 141
Query: 437 ---ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493
+ ++ +G +L+ Q+ +L IAR + + P ++L+DE LD + ++E + L
Sbjct: 142 DECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK 201
Query: 494 LGRSTIIIARRL-SLIRNADYIA 515
+ +I+ + +R +D A
Sbjct: 202 KNFTIVIVTHNMQQAVRVSDMTA 224
|
Length = 269 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 26/220 (11%)
Query: 1069 VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL 1128
V VL ++ G+ A++G +G+GKST++ +I P +G + + G L
Sbjct: 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN--PCARLTPA 81
Query: 1129 RNH-LG--LVQQEPIIF-STTIRENIIY--ARHNASEAEVKEAARIANAHHFISSLPHGY 1182
+ H LG LV QEP++F + +++ENI++ + AS ++K+
Sbjct: 82 KAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ---------L 132
Query: 1183 DTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE-SESSRVVQE--ALDTLI 1239
D +++ +Q + I R +++++ IL+LDE ++S+ +E+ R+ L
Sbjct: 133 DLDSSAGSLEV--ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQG 190
Query: 1240 MGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSL 1278
+G + I+H+ +R + D I V+ G I G L
Sbjct: 191 VG---IVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 67/236 (28%), Positives = 110/236 (46%), Gaps = 24/236 (10%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD----- 1107
+IE N+ Y S V+ LK+ A++G SG GKST++ R +
Sbjct: 4 AIETVNLRVYYGSN---HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEA 60
Query: 1108 PVAGQVLLDGRDLKLYNLRW----LRNHLGLVQQEPIIFS-TTIRENI-IYARHNA---S 1158
V G+V L GR++ Y+ +R +G+V Q P F TI +N+ I + N S
Sbjct: 61 RVEGEVRLFGRNI--YSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKS 118
Query: 1159 EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE 1218
+ E+ E A ++L + +L+ GQ+QR+ IAR + ILL+DE
Sbjct: 119 KKELDERVEWALKK---AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175
Query: 1219 ASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
+++I+ + ++E L L T +L+ H A V D + L G+++E G
Sbjct: 176 PTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-10
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 39/190 (20%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I L+N+ Y RP +L N SL +N G+ + +VG +G+GKST++ ++ +P +G+V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAH 1172
LR +G + QEP + T+ + +I E + A
Sbjct: 61 TRPK------GLR-----VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 1173 HFISSLPHGYDTHVGMRGV------------------------DLTPGQKQRIAIARVVL 1208
L + + L+ G ++R+A+AR +L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 1209 KNAPILLLDE 1218
+ +LLLDE
Sbjct: 170 EEPDLLLLDE 179
|
Length = 530 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 32/238 (13%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGR--DLKLYNLRWL 1128
VL +L + +VG +G GKST+ + P G VL G+ D L L
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 1129 RNHLGLVQQEP--IIFSTTIRENIIYARHNASEAE------VKEAARIANAHHF----IS 1176
R + V Q+P IF T I +I ++ N E V EA + +A HF I
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQ 135
Query: 1177 SLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALD 1236
L HG QK+R+AIA ++ A LLLDE ++ ++ + +
Sbjct: 136 CLSHG---------------QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180
Query: 1237 TLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAKNGLYVR--LMQP 1291
++ I+ +H ++ + D + VL G+I+ G + A + L QP
Sbjct: 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 51/205 (24%), Positives = 80/205 (39%), Gaps = 48/205 (23%)
Query: 318 YLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS----IIPLMERFYDPTLGEVLLDGE 373
R E + S T+ A +A+ + G NG+GK++ + L+ P GEV GE
Sbjct: 9 SCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR----PDAGEVYWQGE 64
Query: 374 NIKN------LKLEWLRSQIGLVTQEPALLSLSIRDNI----AYGRDATLDQIEEAAKIA 423
I+N L +L Q G+ T L+ +N+ + I EA
Sbjct: 65 PIQNVRESYHQALLYLGHQPGIKT------ELTALENLHFWQRFHGSGNAATIWEAL--- 115
Query: 424 HAHTFISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
QVG AGL L+ Q+ ++++AR L + +LDE L
Sbjct: 116 --------------AQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161
Query: 478 DFEAERAVQEALDLLMLGRSTIIIA 502
D E A+ AL + I++
Sbjct: 162 DKEG-VALLTALMAAHAAQGGIVLL 185
|
Length = 209 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 20/218 (9%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
+ + G V + +G NG+GK++ I ++ PT G + G ++ +
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRK 63
Query: 383 LRSQIGLVTQEPAL-LSLSIRDNIA-YGRDATLDQIEEAAKIAHAHTFISSLEKGYETQV 440
+R IG+V Q ++ L+ R+N+ GR L + E + E
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG 123
Query: 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTII 500
+G + +L IA +++ P +L LDE T GLD RA+ + + L TI+
Sbjct: 124 TYSG-----GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 501 I-------ARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ A +L D IA++D GR+ GT +EL
Sbjct: 179 LTTHYMEEADKL-----CDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 2e-10
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 17/204 (8%)
Query: 1058 NVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG 1117
+DF Y +P +L S + G + + G +G+GK+T++ LI +P G++L +
Sbjct: 6 ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 1118 RDLKLYNLRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNASEA-EVKEAARIANAHHFI 1175
+ +K +L + L V + I T+REN +Y H + A + E R+ + H I
Sbjct: 63 QSIK-KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI 121
Query: 1176 SSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL 1235
D G+ L+ GQK+++A+ R+ + A + LLDE +++ S + +
Sbjct: 122 -------DYPCGL----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKI 170
Query: 1236 DTLIMGNKTTILIAHRAAMMRHVD 1259
+L +H+ + D
Sbjct: 171 QEHRAKGGAVLLTSHQDLPLNKAD 194
|
Length = 200 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 44/228 (19%)
Query: 1076 SLKVNGGQTVAVVGVSGSGKST----IISLIERFYDPVAGQVLLDGRDL-KLYNLRWL-- 1128
+L++ G+T+ VVG SG GKST II L++ G+V G+DL + + W
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEWRAV 96
Query: 1129 RNHLGLVQQEPIIFSTTIRENI--IYA------RHNASEAEVKE-----AARIANAHHFI 1175
R+ + ++ Q+P+ S R I I A S EVK+ ++ + I
Sbjct: 97 RSDIQMIFQDPLA-SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155
Query: 1176 SSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS----SIESESSRVV 1231
+ PH + + GQ QRI IAR ++ +++ DE S SI+++ ++
Sbjct: 156 NRYPH-----------EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL 204
Query: 1232 QEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSL 1278
Q+ MG + I IAH A+++H+ D ++V+ G VE GT+D +
Sbjct: 205 QQLQRE--MG-LSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-10
Identities = 70/275 (25%), Positives = 125/275 (45%), Gaps = 30/275 (10%)
Query: 1018 LKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRP--------EV 1069
RR LIS+ + P I+ D +P ++++N+ +P R EV
Sbjct: 283 YPRRFPLISLEHPAKQEPPIEQDTVVDGEP-----ILQVRNLVTRFPLRSGLLNRVTREV 337
Query: 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGR---DLKLYNLR 1126
+ S + G+T+++VG SGSGKST + R + G+++ +G+ L L+
Sbjct: 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQ 397
Query: 1127 WLRNHLGLVQQEPIIFSTTIRENIIYA------RHNASEAEVKEAARIANAHHFISSLPH 1180
LR + + Q+P S R+ + + H + AAR+A + LP
Sbjct: 398 ALRRDIQFIFQDPYA-SLDPRQTVGDSIMEPLRVHGLLPGK-AAAARVAWLLERVGLLPE 455
Query: 1181 GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE-SESSRVVQEALDTLI 1239
H + + GQ+QRI IAR + N +++ DEA S+++ S +++ LD
Sbjct: 456 ----HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511
Query: 1240 MGNKTTILIAHRAAMMRHVDN-IVVLNGGRIVEEG 1273
+ I+H A++ + + + V+ G+IVE G
Sbjct: 512 DFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 26/159 (16%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
+L+ L +PA + VA+VGR+G GKS+++ L+ P+ GE LL G L R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE-LLAG----TAPLAEARE 81
Query: 386 QIGLVTQEPALLSL-SIRDNIAYG-----RDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439
L+ Q+ LL + DN+ G RDA L + A+ + ++L G
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGG---- 137
Query: 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
QK ++++ARA++ P +LLLDE G LD
Sbjct: 138 -----------QKQRVALARALIHRPGLLLLDEPLGALD 165
|
Length = 257 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 30/207 (14%)
Query: 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389
F L V + VA++G +G+GKS+++ L+ F +P G + ++ ++ L + + +
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSM 74
Query: 390 VTQEPALLS-LSIRDNIAYGRDATL-------DQIEEAAKIAHAHTFISSLEKGYETQVG 441
+ QE L + L++R NI G L +++ +AA+ + G +
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ-----------QVGIADYLD 123
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-----GR 496
R L+ Q+ ++++AR ++ ILLLDE LD +E L L+ R
Sbjct: 124 RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD---PLLREEMLALVKQLCSERQR 180
Query: 497 STIIIARRLS-LIRNADYIAVMDEGRL 522
+ +++ LS A IAV+ +G++
Sbjct: 181 TLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 49/243 (20%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKS----SIIPLMERFYDPTL-GEVLLDGENIKN 377
+ + G + A + +ALVG +GSGKS SI+ L+ G +L DGE++
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 378 LKLEWLR----SQIGLVTQEPALLSL----SIRDNIAY---------GRDA---TLDQIE 417
LR ++IG++ QEP + SL +I +A A L+ +E
Sbjct: 82 ASERQLRGVRGNKIGMIFQEP-MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLE 140
Query: 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
I + + Y + L+ Q+ ++ IA A+ P +L+ DE T L
Sbjct: 141 LVG-IPEPEKRLDA----YPHE-------LSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 478 DFEAERAVQ-EALDLLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530
D VQ + LDLL LG + + I L ++R AD + VM G + E GT +
Sbjct: 189 DVT----VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTET 244
Query: 531 LLA 533
L A
Sbjct: 245 LFA 247
|
Length = 534 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 48/196 (24%), Positives = 80/196 (40%), Gaps = 38/196 (19%)
Query: 321 RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380
R + SG T+ A +A+ L G NGSGK++++ L+ P G + LDG +I +
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD- 70
Query: 381 EWLRSQIGLVTQEPAL-LSLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGY 436
+ + A+ +L++ +N+ + I A +
Sbjct: 71 --VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEA-------------- 114
Query: 437 ETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD 490
VG A LA L+ QK ++++AR ++ N I +LDE T LD A E
Sbjct: 115 ---VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE--- 168
Query: 491 LLMLGRS----TIIIA 502
L+ +I A
Sbjct: 169 -LIRAHLAQGGIVIAA 183
|
Length = 207 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-10
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 24/208 (11%)
Query: 320 SRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK 379
R + SG T+ A +A+ + G NGSGK++++ ++ P G VLL+G + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 380 LEWLRSQIGLVTQEPALLSLSIRDNIA-YGRDATLDQIEEAAKIAHAHTFISSLEKGYET 438
R + L +LS+ +N+ + D + +Q+EEA
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEAL-----------------A 111
Query: 439 QVGRAGL------ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492
+VG G L+ Q+ ++++AR +L + +LDE T LD EA+
Sbjct: 112 RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
Query: 493 MLGRSTIIIARRLSLIRNADYIAVMDEG 520
+++ L + +D G
Sbjct: 172 CARGGMVVLTTHQDLGLSEAGARELDLG 199
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129
++N SL V ++G +G+GKST++ +I P +G+++ DG W R
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH-------PWTR 66
Query: 1130 NHL----GLVQQEPIIFSTTIREN--IIYARHNASEAEVKEAARIANAHHFISSLPHGYD 1183
L L++ P+ + T REN + ++ + E I +
Sbjct: 67 KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL------------ 114
Query: 1184 THVGMRGV-DLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGN 1242
T+ G + + G KQR+ IA +L + +L+LDE ++ ++ + ++E + +
Sbjct: 115 TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG 174
Query: 1243 KTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHD 1276
T IL +H + ++ + D+I +++ G + +G +
Sbjct: 175 ITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-10
Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 25/219 (11%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
I L+N+ P +LS + +V G+ + + G SG+GK++++ + + +G
Sbjct: 391 HGITLENLSLRTPDGQ--TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYAR--HNASEAEVKEAARIA 1169
++ + L+ + Q P + T+RE + Y + S+AE+
Sbjct: 449 RISMPADSALLF-----------LPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV 497
Query: 1170 NAHHFISSLPHGYD--THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESES 1227
L D V L+ G++QR+A AR++L + LDEA+S+++ E+
Sbjct: 498 GLGDLAERL-DEEDRWDRV------LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
Query: 1228 SRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266
+ + L + + T I + HR + + L
Sbjct: 551 EDRLYQLLKEE-LPDATVISVGHRPTLWNFHSRQLELLD 588
|
Length = 604 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-10
Identities = 66/253 (26%), Positives = 113/253 (44%), Gaps = 35/253 (13%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
+P + V +G NG+GKS+ + ++ PT G+V ++G++ + E+LRS IGLV
Sbjct: 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IGLVM 103
Query: 392 QE--------PALLSLSIRDNIAYGRDA----TLDQIEEAAKIAHAHTFISSLEKGYETQ 439
+ PAL SL + I D LD + E I LE +
Sbjct: 104 GQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTE----------ILDLEGFLKWP 153
Query: 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGR-ST 498
V + L+ Q+++ +A A+L P +L LDE T GLD A+ ++E L R +T
Sbjct: 154 VRK----LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT 209
Query: 499 IIIARRL--SLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPV 556
+++ + + D + ++D+G+L GT +L Y E + +L + +
Sbjct: 210 VLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF-----SVELKQAKSL 264
Query: 557 RNYKETSTFQIEK 569
IE+
Sbjct: 265 SQLALLGDVTIEE 277
|
Length = 325 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 53/211 (25%), Positives = 108/211 (51%), Gaps = 24/211 (11%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
LT+ V L+G +G GK++++ L+ PT G++ +DGE++ + ++ + I +V
Sbjct: 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMVF 84
Query: 392 QEPALLS-LSIRDNIAYG-------RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443
Q AL +S+ +N+ YG ++ +++EA ++ F E Y Q+
Sbjct: 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF----EDRYVDQISGG 140
Query: 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIII 501
Q+ ++++ARA++L P +LL DE LD R+++E + L +++ +
Sbjct: 141 -------QQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV 193
Query: 502 ARRLS-LIRNADYIAVMDEGRLFEMGTHDEL 531
S +D + VM++G++ ++G+ EL
Sbjct: 194 THDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-10
Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 59/235 (25%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKST----IISLIERFYDPVAGQVLLDGRDLKLYNLR 1126
V+ N S + G+T+ +VG SGSGKST ++ LI G++ DG+ L N R
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-----NSQGEIWFDGQPLHNLNRR 355
Query: 1127 WL---RNHLGLVQQEPIIFSTTIRENI--IYAR-----HNASEAEVKEAARIANAHHFIS 1176
L R+ + +V Q+P S R N+ I A +E IA
Sbjct: 356 QLLPVRHRIQVVFQDPN-SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA------- 407
Query: 1177 SLPHGYDTHVGMRGVDLTP------------GQKQRIAIARVVLKNAPILLLDEASSSIE 1224
M V L P GQ+QRIAIAR ++ +++LDE +SS++
Sbjct: 408 ----------VMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Query: 1225 SESSRVVQEALDTLIMGNKTT-----ILIAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
+ VQ + L+ + + I+H ++R + ++VL G +VE+G
Sbjct: 458 ----KTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
|
Length = 529 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-10
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 38/169 (22%)
Query: 1065 SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLK--- 1121
R E ++ S S +N G+ V + G +G+GK++++ ++ P AG+VL G ++
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 1122 ---LYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA---RHNASEAEVKEAARIANAHHFI 1175
+L +L H ++ E T EN+ + + + EA
Sbjct: 70 DEYHQDLLYL-GHQPGIKTE-----LTALENLRFYQRLHGPGDDEALWEALA-------- 115
Query: 1176 SSLPHGYDTHVGMRGVDLTP------GQKQRIAIARVVLKNAPILLLDE 1218
VG+ G + P GQ++R+A+AR+ L AP+ +LDE
Sbjct: 116 ---------QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDE 155
|
Length = 204 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-10
Identities = 58/227 (25%), Positives = 107/227 (47%), Gaps = 24/227 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA--- 1110
+E+KN+ + V L N SLKV G+ V++ G +G+GKST++ ++ Y P
Sbjct: 6 LEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYE 61
Query: 1111 GQVLLDGRDLKLYNLR--------WLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEV 1162
G+++ +G +L+ N+R + L LV++ ++ ENI +
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKE------LSVLENIFLGNEITPGGIM 115
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
A A ++ L D + +L GQ+Q + IA+ + K A +L+LDE ++S
Sbjct: 116 DYDAMYLRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTAS 173
Query: 1223 IESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGR 1268
+ + V+ + + L I I+H+ ++ + D I V+ GR
Sbjct: 174 LTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 6e-10
Identities = 53/230 (23%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 1054 IELKNVDFCY-PSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
I+ + V++ Y P+ P L + L+V G A++G +GSGKST++ + P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1112 QV----LLDGRDLKLYNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARHNASEAEVKEA 1165
+V ++ K ++ +R +G+V Q P +F T+ +++ + N + ++A
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK-EKA 120
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
+IA + L + +L+ GQ +R+AIA ++ +L+LDE ++ ++
Sbjct: 121 EKIAAEKLEMVGLADEFWEK---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRA-AMMRHVDNIVVLNGGRIVEEGT 1274
++ + + +++ +T +L+ H + + D + +L G I+ GT
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 6e-10
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 33/185 (17%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLL--DGRDLKLYN---- 1124
VL N SL VN G+ V + G SGSGKST++ + Y P GQ+L+ +G + L
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1125 --LRWLRNHLGLVQQEPIIFSTTI---------RENIIYARHNASEAEVKEAARIA--NA 1171
L R +G V Q F I E ++ A K A + N
Sbjct: 86 EVLEVRRTTIGYVSQ----FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNL 141
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
+ SL T G G++QR+ IAR + + PILLLDE ++S+++ + VV
Sbjct: 142 PERLWSLAPA--TFSG--------GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
Query: 1232 QEALD 1236
E +
Sbjct: 192 VELIR 196
|
Length = 235 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVLLDGENIKNLKL 380
E IL G L++ + A++G NGSGKS++ ++ Y G++L GE+I +L+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 381 EWLRSQIG--LVTQEPA---------LLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFI 429
E R+ +G L Q P L L+ + LD +E I +
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV 137
Query: 430 SSLEKGYETQV--GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487
V G +G +K + I + LL+ + +LDE GLD +A + + E
Sbjct: 138 GMDPSFLSRNVNEGFSG-----GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 488 ALDLLM-LGRSTIIIA---RRLSLIRNADYIAVMDEGRLFEMGT 527
++ LM S I+I R L I DY+ VM G++ + G
Sbjct: 193 GINKLMTSENSIILITHYQRLLDYI-KPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 7e-10
Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 10/199 (5%)
Query: 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+E +++ SY S E + +L G L + A + VA+VG +GSGKS+++ ++ PT G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 368 VLLDGENIKNLKLEWL----RSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKI 422
+ G+++ L + L R G + Q LLS L+ N+ A +E ++
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEV--PAVYAGLERKQRL 122
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
A + L G E +V L+ Q+ ++SIARA++ ++L DE TG LD +
Sbjct: 123 LRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
Query: 483 RAVQEALDLLMLGRSTIII 501
V L L T+II
Sbjct: 181 EEVMAILHQLRDRGHTVII 199
|
Length = 648 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 7e-10
Identities = 65/233 (27%), Positives = 95/233 (40%), Gaps = 51/233 (21%)
Query: 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP----TLGEVLLDGENIKNLKLEWL 383
L++ + +ALVG +GSGKS + P T GE+LLDG + L +
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSI--- 59
Query: 384 RS-QIGLVTQEP----------------ALLSLSIRDNIAYGRDATLDQIE-----EAAK 421
R I + Q P L SL A R L+ +E + +
Sbjct: 60 RGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQA--RALILEALEAVGLPDPEE 117
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
+ + F S G Q ++ IA A+LL P L+ DE T LD
Sbjct: 118 VLKKYPFQLS---GGMLQ--------------RVMIALALLLEPPFLIADEPTTDLDVVN 160
Query: 482 ERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDEL 531
+ V + L L G ++I L ++ R AD +AVMD+GR+ E GT E+
Sbjct: 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 62/267 (23%), Positives = 100/267 (37%), Gaps = 55/267 (20%)
Query: 321 RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380
+L+ L++ + + VAL+GR+G GKS++ L+ P+ G V GE + L
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 381 EWL--------------------RSQIGLVTQEPA--LLSLSIRDNIAYGRDATLDQIEE 418
R + + +EP LLSL + +A L ++
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLAR-ASEMLRAVDL 140
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
+ L G Q+ R +ARA+ + P +L+LDE LD
Sbjct: 141 DD--SVLDKRPPQLSGG---QLQRV------------CLARALAVEPKLLILDEAVSNLD 183
Query: 479 FEAERAVQ-EALDLL-----MLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDEL 531
+Q + LL G + + I L L+ R + VMD G++ E +
Sbjct: 184 ----LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDK 239
Query: 532 LATGDLYAELLKCEEAAKLPRRMPVRN 558
L +L+ A LP PVR
Sbjct: 240 LTFSSPAGRVLQ---NAVLPAF-PVRR 262
|
Length = 268 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 7e-10
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 21/205 (10%)
Query: 341 ALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWLRSQIGLVTQEPA-LLS 398
++G NG+GK++++ ++ P G VL G ++ L + R+ IG Q+P +
Sbjct: 32 VIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91
Query: 399 LSIRDN--IAYGRD--------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGR-AGLAL 447
L++ +N +A RD L EE +I I G + R AGL L
Sbjct: 92 LTVFENLELALPRDKSVFASLFFRLSA-EEKDRIEEVLETI-----GLADEADRLAGL-L 144
Query: 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507
+ QK L I ++ +P +LLLDE G+ E E L L S +++ +
Sbjct: 145 SHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF 204
Query: 508 IRN-ADYIAVMDEGRLFEMGTHDEL 531
+R+ AD + V+ +G + G+ D++
Sbjct: 205 VRSIADKVTVLHQGSVLAEGSLDQV 229
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-10
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 42/193 (21%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+EF NV Y +L + +A+VG NG+GKS+++ L+ P G V
Sbjct: 322 LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPA--LLSLSIRDNIAYGRDATLDQIEEAA------ 420
+ GE +K IG Q ++ + + + D E+
Sbjct: 380 KV-GETVK----------IGYFDQHRDELDPDKTVLEEL---SEGFPDGDEQEVRAYLGR 425
Query: 421 ---KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
+ L G +K +L +A+ +L P++LLLDE T L
Sbjct: 426 FGFTGEDQEKPVGVLSGG---------------EKARLLLAKLLLQPPNLLLLDEPTNHL 470
Query: 478 DFEAERAVQEALD 490
D E+ A++EAL
Sbjct: 471 DIESLEALEEALL 483
|
Length = 530 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 44/230 (19%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
L V ++ V+L+G NG+GK+++ + FY PT G +LL G++I+ GL
Sbjct: 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE-----------GLPG 74
Query: 392 QEPALLSLSIR--DNIAYGRDATLDQIEEAAKIAHAH---TFISSLEK--GYE------- 437
+ A + + +R ++ R+ T+ IE H S L K +
Sbjct: 75 HQIARMGV-VRTFQHVRLFREMTV--IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL 131
Query: 438 -------TQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
+VG A L Q+ +L IAR ++ P IL+LDE GL+ + +
Sbjct: 132 DRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKE 191
Query: 485 VQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531
+ E + L + ++I + L+ +D I V+++G GT +E+
Sbjct: 192 LDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
Length = 255 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 22/172 (12%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
P L LT+ + + + ++G +G GK++++ L+ F G + LDG+ ++ E
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER-- 72
Query: 385 SQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443
G+V Q LL +++DN+A+G L +E+ ++ AH + +VG
Sbjct: 73 ---GVVFQNEGLLPWRNVQDNVAFGLQ--LAGVEKMQRLEIAHQMLK--------KVGLE 119
Query: 444 GLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
G L+ Q+ ++ IARA+ NP +LLLDE G LD +Q L
Sbjct: 120 GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL 171
|
Length = 255 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 9e-10
Identities = 38/205 (18%), Positives = 86/205 (41%), Gaps = 43/205 (20%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR-WLR 1129
+ + S +V G+ V + G+ G+G++ + + P +G++ LDG+ + + R +R
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 1130 NHLGLV----QQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTH 1185
+ V ++E ++ ++ ENI +
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------ 104
Query: 1186 VGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTT 1245
L+ G +Q++ +AR + ++ +L+LDE + ++ + + + L K
Sbjct: 105 -------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAV 157
Query: 1246 ILIAHR-AAMMRHVDNIVVLNGGRI 1269
+LI+ ++ D I+V+ GRI
Sbjct: 158 LLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 9e-10
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
E+ IL+G L V + +AL+G +GSGKS+++ ++ D + GEV L G+ + + E
Sbjct: 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81
Query: 383 ---LRSQ-IGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYE 437
LR++ +G V Q L+ +L+ +N+ A L A + L G
Sbjct: 82 RAKLRAKHVGFVFQSFMLIPTLNALENVEL--PALLRGESSRQSRNGAKALLEQLGLGKR 139
Query: 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
A L+ E+Q++ L ARA P +L DE TG LD
Sbjct: 140 LDHLPAQLSGGEQQRVAL--ARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 28/226 (12%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGE---NIKN 377
+L G L V + VA++G +GSGK++++ + P +G++ +D + +
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 378 LKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG----RDATLDQIEEAAKIAHAHTFISSL 432
+ LR +G V Q L ++ +NI G + ++ A+ A ++
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK 137
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD-- 490
E Y + L+ Q+ +++IARA+ + P ++L DE T LD E V E L+
Sbjct: 138 ETSYPRR-------LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTI 187
Query: 491 --LLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
L R+ +I+ +S R+ AD MD+GR+ E G L A
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 31/222 (13%)
Query: 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
I+ +N+ + + E+ L + + + +A++G+ GSGK++ I + P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 367 EVLLDGENIKNLK----LEW--------------------LRSQIGLVTQ--EPALLSLS 400
+ ++ KN K E +R ++G+V Q E L +
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 401 IRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460
I +I +G + EEA K A + + L++ Y + R+ L+ QK ++++A
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRVALAGI 179
Query: 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA 502
+ + P L+ DE T GLD + + + E D L TII+
Sbjct: 180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILV 221
|
Length = 305 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 58/238 (24%), Positives = 96/238 (40%), Gaps = 51/238 (21%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLK-----VNGGQTVAVVGVSGSGKSTIISLIERFYDP 1108
+EL+NV F Y FS+ + G+ + ++G +GSGKST+ L+ Y P
Sbjct: 323 LELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 1109 VAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARI 1168
+G++LLDG+ + R FS + ++ + E + A +
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRKL----------FSAVFTDFHLFDQLLGPEGKPANPALV 425
Query: 1169 AN-------------AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILL 1215
IS+L L+ GQK+R+A+ + + ILL
Sbjct: 426 EKWLERLKMAHKLELEDGRISNL-------------KLSKGQKKRLALLLALAEERDILL 472
Query: 1216 LDEASSSIESESSRVV-QEALDTL-IMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVE 1271
LDE ++ + R Q L L MG KT I+H H D ++ + G++ E
Sbjct: 473 LDEWAADQDPHFRREFYQVLLPLLQEMG-KTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 29/216 (13%)
Query: 1077 LKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQ 1136
L + G+ + ++G +G+GK+T++ I P G V + G + H+G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVP 55
Query: 1137 QEPII---FSTTIRENIIYARHN----------ASEAEVKEAARIANAHHFISSLPHGYD 1183
Q F ++ ++ R A A V++A R L D
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-------LTELAD 108
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK 1243
VG +L+ GQ+QR+ +AR + +LLLDE + ++ + ++ E L
Sbjct: 109 RPVG----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164
Query: 1244 TTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
++ H A + VVL GR++ +GT L
Sbjct: 165 AILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-09
Identities = 56/216 (25%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIE-RFY-DPVAGQVLLDGRDLKLYNL 1125
E +L+ + + G+ +AV+G SGSGKST+++ + R + G +L + R L
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 1126 RWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSL--PHGY 1182
+ G V Q+ I++ T+RE +++ + + +I A IS L
Sbjct: 140 K----RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195
Query: 1183 DTHVG---MRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI 1239
+T +G +RG+ + G+++R++IA +L N +L+LDE +S +++ ++ + L +L
Sbjct: 196 NTIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253
Query: 1240 MGNKTTILIAHRAA--MMRHVDNIVVLNGGRIVEEG 1273
KT + H+ + + + D+++VL+ GR + G
Sbjct: 254 QKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 40/219 (18%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSS---IIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
IL+ L V + + +A++G +GSGK++ I T G++L +G+ K ++
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK--PDQF 79
Query: 383 LRSQIGLVTQEPALLS-LSIRDNIAY---------GRDATLDQIEEAAKIAH------AH 426
+ + V Q+ LL L++R+ + Y DA + E +
Sbjct: 80 QKC-VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG 138
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FEAERAV 485
+ + G E++ ++SIA +L +P +L+LDE T GLD F A V
Sbjct: 139 NLVKGISGG--------------ERR-RVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183
Query: 486 QEALDLLMLGRSTI--IIARRLSLIRNADYIAVMDEGRL 522
L R I I R L R D I ++ G +
Sbjct: 184 STLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 22/220 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E NV + + L +V + L+G NG+GK++ I ++ P GEV
Sbjct: 1 LEVENVTKRF---GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNIAYGRDATLDQIEEAAKIAHAHT 427
L DG+ + R++IG + +E L + + D + Y L Q++ K
Sbjct: 58 LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVY-----LAQLKGLKKEEARRR 108
Query: 428 FISSLEK----GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
LE+ Y + L+ +QK++ AV+ +P +L+LDE GLD
Sbjct: 109 IDEWLERLELSEYANKRVEE-LSKGNQQKVQF--IAAVIHDPELLILDEPFSGLDPVNVE 165
Query: 484 AVQEAL-DLLMLGRSTIIIARRLSLI-RNADYIAVMDEGR 521
+++ + +L G++ I+ ++ L+ D + ++++GR
Sbjct: 166 LLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-09
Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 24/221 (10%)
Query: 316 FSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI 375
F RP + L+ +T + A +G NG+GK++ + ++ PT G VL+ G++I
Sbjct: 938 FEPSGRPAVDRLN---ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 376 KNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAY-----GRDATLDQIEEAAKIAHAHTFI 429
+ L+ +R +G+ Q L L++ ++I + GR Q+E A +
Sbjct: 995 ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLE------ 1047
Query: 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
+ G + L+ + KLS+A A + + +++LDE T G+D + R++ + L
Sbjct: 1048 ---DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL 1104
Query: 490 DLLMLGRSTIIIARRL---SLIRNADYIAVMDEGRLFEMGT 527
GR+ I+ + L+ D IA++ +GRL+ GT
Sbjct: 1105 LKYRSGRTIIMSTHHMDEADLL--GDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 52/227 (22%), Positives = 112/227 (49%), Gaps = 24/227 (10%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK------ 379
+L G L A ++++G +GSGKS+ + + P+ G ++++G+ I ++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 380 -------LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISS 431
L LR+++ +V Q L S +++ +N+ L ++ A+ A +++
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-ERAVKYLAK 138
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491
+ E G+ + L+ Q+ ++SIARA+ + P +LL DE T LD E V E L +
Sbjct: 139 VGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVGEVLRI 194
Query: 492 LML----GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
+ G++ +++ + R+ + ++ + +G++ E G ++L
Sbjct: 195 MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
Length = 257 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 319 LSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL---GEVLLDGENI 375
L P +L+ T+ + V L+G +G GKS+++ M GE+ L+ + +
Sbjct: 10 LRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69
Query: 376 KNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEK 434
L + QIG++ Q+ L LS+ N+ + ATL + A+A +LE+
Sbjct: 70 DMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPATL-KGNARRNAANA-----ALER 121
Query: 435 GYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
G G L+ Q+ ++++ RA+L P LLLDE LD
Sbjct: 122 -----SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 13/216 (6%)
Query: 1069 VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY--DPVAGQVLLDGRDLKLYNLR 1126
V L L+V G+ V + G +G+GKST++ ++ Y G++ G LK N+R
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73
Query: 1127 WL-RNHLGLVQQE-PIIFSTTIRENIIYAR---HNASEAEVKEAARIANAHHFISSLPHG 1181
R + ++ QE ++ ++ ENI + A A + + L
Sbjct: 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG--GRMAYNAMYLRAKNLLRELQLD 131
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
+V D GQ+Q + IA+ + K A +L+LDE SSS+ + + ++ + + L
Sbjct: 132 -ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190
Query: 1242 NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHD 1276
+ I+H+ ++ V D I V+ G+ V T D
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV--ATKD 224
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 35/227 (15%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
+ N S +V G+ ++G +G+GK+T +I +P G++ +G L + ++N
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKN 72
Query: 1131 HLGLVQQEPIIF-STTIRENIIY-AR-HNASEAEVK-------EAARIANAHHFISSLPH 1180
+G + +E ++ T+ + + Y A +AE++ E I
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG---------- 122
Query: 1181 GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM 1240
+ +L+ G +Q+I V+ +L+LDE S ++ + ++++A+ L
Sbjct: 123 ----KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178
Query: 1241 GNKTTILIAHRAAMMRHV----DNIVVLNGGRIVEEGTHDSLLAKNG 1283
T I +HR M HV D +++L G+ V GT + + G
Sbjct: 179 EGATIIFSSHR---MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 4e-09
Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 49/250 (19%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E RN+ R +L LT+ + VA++G NG+GKS+++ + P GEV
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNIAYGRDA-TLDQIEEAAKIAHAH 426
L+G + + L + ++ Q +L ++ + +A GR L + E+ A +A A
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA- 118
Query: 427 TFISSLEKGYETQVGRAGLA------LT--EEQKIKLSIARAVLLN-------PSILLLD 471
L QV A LA L+ E+Q+++L AR VL P LLLD
Sbjct: 119 -----LA-----QVDLAHLAGRDYPQLSGGEQQRVQL--AR-VLAQLWEPDGPPRWLLLD 165
Query: 472 EVTGGLDFEAERAVQEALDLLMLGRS--------TIIIARRLSL-IRNADYIAVMDEGRL 522
E T LD + +L L R I++ L+L R AD I ++ +GRL
Sbjct: 166 EPTSALD------LAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL 219
Query: 523 FEMGTHDELL 532
GT E+L
Sbjct: 220 VADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
+L G L + + +A++G NG+GKS+++ + P GEV L+G + + E L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 386 QIGLVTQEPAL-LSLSIRDNIAYGR-----DATLDQIEEAAKIAHAHTFISSLEKGYETQ 439
++ Q +L ++++ + GR ++ E A A A T +S L
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA------ 129
Query: 440 VGRAGLALT--EEQKIKLSIAR------AVLLNPSILLLDEVTGGLDFEAERAV-QEALD 490
GR L+ E+Q+++L AR + + L LDE T LD + + A
Sbjct: 130 -GRDYRTLSGGEQQRVQL--ARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 491 LLMLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLAT 534
L G + + + L+L + AD I ++ +GR+ G+ ++L
Sbjct: 187 LAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231
|
Length = 259 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-09
Identities = 44/197 (22%), Positives = 74/197 (37%), Gaps = 37/197 (18%)
Query: 320 SRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK 379
SR E + G T+ A +A+ + G NG GK++++ ++ P GEV +G + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 380 LEWLRSQIGLVTQEPALLS-LSIRDNI-------AYGRDATLDQIEEAAKIAHAHTFISS 431
E R I + P L LS +N+ + D + +
Sbjct: 69 DEPHR-NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQ 127
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491
L G Q+ +L++AR L + +LDE T LD + + L
Sbjct: 128 LSAG---------------QQRRLALARLWLSRAPLWILDEPTTALD-------KAGVAL 165
Query: 492 LM------LGRSTIIIA 502
L L R I++
Sbjct: 166 LAGLLRAHLARGGIVLL 182
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 32/209 (15%)
Query: 343 VGRNGSGKSS----IIPLMERFYDPTLGEVLLDGENIKNL-KLEWL--RSQIGLVTQEPA 395
VG +G GKS+ II L++ T GEV G+++ + EW RS I ++ Q+P
Sbjct: 53 VGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP- 107
Query: 396 LLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL---------- 445
L SL+ R I + I E + H ++ + + + GL
Sbjct: 108 LASLNPRMTIG-------EIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH 160
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIAR 503
+ Q ++ IARA++L P +++ DE LD + V L L +G S I IA
Sbjct: 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH 220
Query: 504 RLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531
L+++++ +D + VM G E+GT+DE+
Sbjct: 221 DLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL-KLYNLRWLRN 1130
L++ SL V+ G+ ++G +G+GK+T++ +I P G VL G DL L + R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 1131 HLGLVQQEPIIF-STTIRENIIYA-----------RHNASEAEVKEAARIANAHHFISSL 1178
+G Q+P +F + T+ EN+ A S E RI I
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEE---KDRIEEVLETI--- 131
Query: 1179 PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTL 1238
G L+ GQKQ + I +++++ +LLLDE + + E + E L +L
Sbjct: 132 --GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189
Query: 1239 IMGNKTTILIAHRAAMMRHVDNIV-VLNGGRIVEEGTHD 1276
G + +++ H +R + + V VL+ G ++ EG+ D
Sbjct: 190 A-GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 6e-09
Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 17/218 (7%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW 1127
+ + S +V G+ ++G +G+GK+T I ++ P +G+ + G D+ + R
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREPRE 70
Query: 1128 LRNHLGLVQQEPII-FSTTIRENI-IYAR-HNASEAEVKEAARIANAHHFISSLPHGYDT 1184
+R +G+V Q+ + T EN+ I+AR + AE +E RI F+ L D
Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE--RIDELLDFV-GLLEAADR 127
Query: 1185 HVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKT 1244
V + G ++R+ IAR ++ +L LDE + ++ ++ V E ++ L
Sbjct: 128 LVKT----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1245 TILIA----HRAAMMRHVDNIVVLNGGRIVEEGTHDSL 1278
TIL+ A + D + +++ GRI+ EGT + L
Sbjct: 184 TILLTTHYMEEAEQL--CDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 55/232 (23%), Positives = 101/232 (43%), Gaps = 45/232 (19%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW-LR 1129
V+ + SL VN G+ V ++G +G+GK+T ++ AG +++D D+ L L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 1130 NHLGLVQQEPIIFST-----------TIRENIIYARHNASEAEVKEAARIANAHHFISSL 1178
+G + QE IF IR+++ + E+ E I H S+
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE---HLRDSM 134
Query: 1179 PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESES----SRVVQEA 1234
G L+ G+++R+ IAR + N +LLDE + ++ S R+++
Sbjct: 135 -----------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL 183
Query: 1235 LDT----LIMGN--KTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280
D+ LI + + T+ + RA +++ G ++ GT +L
Sbjct: 184 RDSGLGVLITDHNVRETLAVCERA---------YIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 67/219 (30%), Positives = 107/219 (48%), Gaps = 32/219 (14%)
Query: 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389
F LTV + VA++G +G+GKS+++ L+ F P G + L+G++ R + +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM 75
Query: 390 VTQEPALLS-LSIRDNIAYGRDATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
+ QE L S L++ NI G + L Q E+ IA + G E + R
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIAR--------QMGIEDLLARLP 127
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504
L+ Q+ ++++AR ++ ILLLDE LD A R QE L L+ S + R+
Sbjct: 128 GQLSGGQRQRVALARCLVREQPILLLDEPFSALD-PALR--QEMLTLV----SQVCQERQ 180
Query: 505 LSL------IRNADYIA----VMDEGRLFEMGTHDELLA 533
L+L + +A IA V+ +GR+ G DELL+
Sbjct: 181 LTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 8e-09
Identities = 50/206 (24%), Positives = 95/206 (46%), Gaps = 30/206 (14%)
Query: 1082 GQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRD---LKLYNLRWLRNHLGLV-QQ 1137
G+ + G SG+GKST++ LI P AG++ G D LK + +LR +G++ Q
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 1138 EPIIFSTTIRENI----IYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDL 1193
++ T+ +N+ I A AS +++ R++ A + L + + + G
Sbjct: 88 HHLLMDRTVYDNVAIPLIIA--GASGDDIRR--RVSAALDKVGLLDKAKNFPIQLSG--- 140
Query: 1194 TPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALD-------TLIMGNKTTI 1246
G++QR+ IAR V+ +LL DE + +++ S + + T++M
Sbjct: 141 --GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198
Query: 1247 LIAHRAAMMRHVDNIVVLNGGRIVEE 1272
LI+ R+ ++ L+ G +
Sbjct: 199 LISRRSY------RMLTLSDGHLHGG 218
|
Length = 222 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 9e-09
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 31/177 (17%)
Query: 366 GEVLLDGENIKNLK-LEWLRSQIGLVT----QEPALLSLSIRDNIA---YGRDATLDQIE 417
GE+LLDG+ ++ + +++ I V E +L +SI +NI R + I+
Sbjct: 314 GEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLID 373
Query: 418 EAAKIAHAHTFISSLE-KGYETQVGRAGLALTEEQKI---------KLSIARAVLLNPSI 467
+ A A +I L K + EQ I K+ +AR + +P +
Sbjct: 374 RRKERALAERYIRRLRIK-----------TPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422
Query: 468 LLLDEVTGGLDFEAERAVQEAL-DLLMLGRSTIIIARRLS-LIRNADYIAVMDEGRL 522
L+LDE T G+D A+ + + +L G++ ++I+ L L+ +D I VM EGR+
Sbjct: 423 LILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 9e-09
Identities = 69/280 (24%), Positives = 113/280 (40%), Gaps = 30/280 (10%)
Query: 264 LNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNT---LPSVHGNIEFRNVYFSYLS 320
L A + ++A ++ ++ + D P +E RNV F+Y
Sbjct: 279 LLSAVGILPTLLTAQVAFNKIAKL---ELAPYKADFPRPQAFPDWKT-LELRNVRFAYQ- 333
Query: 321 RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380
+ LT+ + V L+G NGSGKS++ L+ Y P GE+LLDG+ + +L
Sbjct: 334 -DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQL 392
Query: 381 EWLRSQIGLVTQE----PALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGY 436
E R V + LL + + + L ++E A K + S+L+
Sbjct: 393 EDYRKLFSAVFSDYHLFDQLLGPEGKASPQ-LIEKWLQRLELAHKTSLNDGRFSNLK--- 448
Query: 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD--FEAERAVQEALDLLML 494
L+ QK +L++ A+L IL+LDE D F E L
Sbjct: 449 ----------LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ 498
Query: 495 GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534
G++ I+ +AD + M G+L E+ T +E T
Sbjct: 499 GKTIFAISHDDHYFIHADRLLEMRNGQLSEL-TGEERDET 537
|
Length = 546 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 57/246 (23%), Positives = 105/246 (42%), Gaps = 37/246 (15%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131
L S +V G+ + +VG +G+GKST+++ + +G + G+ L+ ++ L H
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 1132 LG-LVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRG 1190
L QQ+ F+ + + + + + E +A A L R
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDKTRTE--LLNDVAGALALDDKLG---------RS 122
Query: 1191 VD-LTPGQKQRIAIARVVLKNAP-------ILLLDEASSSIESESSRVVQE-ALDTLIM- 1240
+ L+ G+ QR+ +A VVL+ P +LLLDE +S++ V Q+ ALD L+
Sbjct: 123 TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-----VAQQSALDRLLSA 177
Query: 1241 --GNKTTILIAHR--AAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYGKG 1296
I+++ +RH +L G+++ G + +L L YG
Sbjct: 178 LCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVL-----AQAYGMN 232
Query: 1297 LRQHRL 1302
R+ +
Sbjct: 233 FRRLDI 238
|
Length = 248 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 57/224 (25%), Positives = 90/224 (40%), Gaps = 41/224 (18%)
Query: 1082 GQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRD---LKLYNL------RWLRNHL 1132
G+ + +VG SGSGKST++ + P G R L+LY L R +R
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 1133 GLVQQEP-------IIFSTTIRENI--IYARH--NASEAEVKEAARIANAHHFISSLPHG 1181
G V Q P + I E + I ARH N + I LP
Sbjct: 89 GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRA 148
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
+ + G +QR+ IAR ++ ++ +DE + ++ VQ L L+ G
Sbjct: 149 F-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS----VQARLLDLLRG 193
Query: 1242 -----NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLL 1279
I++ H + R + ++V+ GR+VE G D +L
Sbjct: 194 LVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-08
Identities = 50/225 (22%), Positives = 102/225 (45%), Gaps = 1/225 (0%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
+L +V + V L+GR GSGKS+++ + R T GE+ +DG + ++ L+ R
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292
Query: 386 QIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
G++ Q+ + S + R N+ + ++I + A+ + I + + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGY 1352
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
L+ K + +AR++L ILLLDE + LD + +++ L + I+ R+
Sbjct: 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412
Query: 506 SLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKL 550
+ V++ + + + +LL L+ + + + KL
Sbjct: 1413 EALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKL 1457
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-08
Identities = 58/244 (23%), Positives = 114/244 (46%), Gaps = 23/244 (9%)
Query: 1054 IELKNVDFCYPS--RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
I+++NV Y S R V + N SL+V G+ +VG SG+GK+T+ +I +P +G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 1112 QV-------LLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVK 1163
+V +D + ++G++ QE ++ T+ +N+ A
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEA---IGLELPD 396
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVD-----LTPGQKQRIAIARVVLKNAPILLLDE 1218
E AR+ G+D +D L+ G++ R+A+A+V++K I++LDE
Sbjct: 397 ELARMKAVITLKMV---GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE 453
Query: 1219 ASSSIESESSRVVQEA-LDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHD 1276
+ +++ + V + L +T I+++H + V D ++ G+IV+ G +
Sbjct: 454 PTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513
Query: 1277 SLLA 1280
++
Sbjct: 514 EIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 16/223 (7%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLI--ERFYDPVAGQVLLDGRDL-KLYNLRW 1127
+L +L V G+ A++G +GSGKST+ I Y+ +G +L G+DL +L
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 1128 LRNHLGLVQQEP-----IIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGY 1182
R L L Q P + +R + R E + + ++ L G
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALL--GM 132
Query: 1183 DTHVGMRGVD--LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM 1240
D R V+ + G+K+R I ++ L + +LDE S ++ ++ ++V E ++ L
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192
Query: 1241 GNKTTILIAHRAAMMRHV--DNIVVLNGGRIVEEGTHDSLLAK 1281
+++ ++I H ++ ++ D + VL GRIV+ G D LAK
Sbjct: 193 PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG--DVELAK 233
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQIGLV 390
LTV + + V L+G NG+GK++ ++ G +++D E+I L L R IG +
Sbjct: 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
Query: 391 TQEPALLS-LSIRDNI----AYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
QE ++ LS+ DN+ D + +Q E+ A I L G
Sbjct: 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-------GQ 136
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
+L+ ++ ++ IARA+ NP +LLDE G+D
Sbjct: 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 41/233 (17%)
Query: 1073 SNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV---LLDGRDLKLYNL---- 1125
+ S + G+ + +VG SGSGK+T++ I P AG V + DG+ LY +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 1126 --RWLRNHLGLVQQEP---IIFSTTIRENI------IYARH--NASEAEVKEAARIANAH 1172
R LR G V Q P + + NI I ARH N +
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDL 142
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
I LP + GM+ QR+ IAR ++ ++ +DE + ++ VQ
Sbjct: 143 DRIDDLPRTFSG--GMQ---------QRLQIARNLVTRPRLVFMDEPTGGLDVS----VQ 187
Query: 1233 EALDTLIMG-----NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLL 1279
L L+ G +++ H A+ R + D ++V+ G++VE G D +L
Sbjct: 188 ARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVL 240
|
Length = 258 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 31/213 (14%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL--KLEWLR 384
L LTV + AL+G NG+GKS+++ ++ ++PT G + ++ N L KL +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA-Q 79
Query: 385 SQIGLVTQEPALLS-LSIRDNIAYGRDAT-------LDQIEEAAKIAHAHTFISSLEKGY 436
IG++ QE +++ L++ +N+ GR T + E A L+
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-- 494
+ +V L+++ +Q L IA+ ++L+ ++++DE T L + +D L L
Sbjct: 140 DEKVAN--LSISHKQ--MLEIAKTLMLDAKVIIMDEPTSSL-------TNKEVDYLFLIM 188
Query: 495 ------GRSTIIIARRLSLIRN-ADYIAVMDEG 520
G + + I+ +L+ IR D VM +G
Sbjct: 189 NQLRKEGTAIVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-08
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 35/208 (16%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL---KLEWLRSQIGLVTQEPAL 396
++LVG +GSGKS+ + R + GE++ +G+ I L KL+ LR I + Q+P
Sbjct: 353 LSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP-Y 411
Query: 397 LSLSIRDNIAYG-----RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL------ 445
SL R + R L + AA ++ L + R GL
Sbjct: 412 ASLDPRQTVGDSIMEPLRVHGLLPGKAAAA------RVAWLLE-------RVGLLPEHAW 458
Query: 446 ----ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE-RAVQEALDLLM-LGRSTI 499
+ Q+ ++ IARA+ LNP +++ DE LD + + LDL G + +
Sbjct: 459 RYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518
Query: 500 IIARRLSLI-RNADYIAVMDEGRLFEMG 526
I+ ++++ R + +AVM G++ E+G
Sbjct: 519 FISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 46/206 (22%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIIS-LIERFYD-PVAGQVLLDGRDLKLYNLRWLR 1129
L+N S V G A++G SG+GK+T++ L R + G++L++GR L +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN----FQ 78
Query: 1130 NHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGM 1188
G V+Q+ + T+RE + + +
Sbjct: 79 RSTGYVEQQDVHSPNLTVREALRF--------------------------------SALL 106
Query: 1189 RGVDLTPGQKQRIAIARVVLKNAP-ILLLDEASSSIESESSRVVQEALDTLIMGNKTTIL 1247
RG L+ Q++R+ I V L P IL LDE +S ++S+++ + L L + +
Sbjct: 107 RG--LSVEQRKRLTIG-VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163
Query: 1248 IAHR--AAMMRHVDNIVVL-NGGRIV 1270
H+ A++ D +++L GG+ V
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTV 189
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 28/151 (18%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG-LVTQEPALLS 398
V +G NG+GKS+ + ++ + P G V + GE++ E ++ IG L P L
Sbjct: 31 VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIGYLPEHNPLYLD 89
Query: 399 LSIRDNIA-----YGRDATL--DQIEEAAKIA----HAHTFISSLEKGYETQVGRAGLAL 447
+ +R+ + YG L ++EE ++ H I L KGY +VG
Sbjct: 90 MYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVG------ 143
Query: 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
+A+A++ +P +L+LDE T GLD
Sbjct: 144 ---------LAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 63/249 (25%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKS----SIIPLMERFYDPT------LGEVLLDGEN 374
+++ L + A + +ALVG +GSGKS SI+ L+ P+ G++ GE+
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-----PSPPVVYPSGDIRFHGES 77
Query: 375 IKNLKLEWLR----SQIGLVTQEPALLSLSIRDNI------------AYGRDATLDQIEE 418
+ + + LR ++I ++ QEP ++SL+ + R+A +I
Sbjct: 78 LLHASEQTLRGVRGNKIAMIFQEP-MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEI-- 134
Query: 419 AAKIAHAHTFISSLEK-GYETQVGRAG-----LALTEEQKIKLSIARAVLLNPSILLLDE 472
++ L++ G R L+ E Q++ IA A+L P +L+ DE
Sbjct: 135 ----------LNCLDRVGIRQAAKRLTDYPHQLSGGERQRVM--IAMALLTRPELLIADE 182
Query: 473 VTGGLDFEAERAVQ-EALDLLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEM 525
T LD +VQ + L LL L + I LS++R AD +AVM GR E
Sbjct: 183 PTTALDV----SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238
Query: 526 GTHDELLAT 534
L +
Sbjct: 239 NRAATLFSA 247
|
Length = 529 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 5e-08
Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 44/236 (18%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131
L S +V G+ + +VG +G+GKST+++ + P +G + G+ L+ ++ L H
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARH 70
Query: 1132 LG-LVQQEPIIFSTTIRENIIY-ARHNASEAEVKEAA----RIANAHHFISSLPHGYDTH 1185
L QQ+ F+ + + Y H + + A +A A L
Sbjct: 71 RAYLSQQQTPPFAMPVFQ---YLTLHQPDKTRTEAVASALNEVAEALGLDDKLG----RS 123
Query: 1186 VGMRGVDLTPGQKQRIAIARVVLK-------NAPILLLDEASSSIESESSRVVQE-ALDT 1237
V L+ G+ QR+ +A VVL+ +LLLDE +S++ V Q+ ALD
Sbjct: 124 VN----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDR 174
Query: 1238 LIMGNKTTILIAHRAAMM---------RHVDNIVVLNGGRIVEEGTHDSLLAKNGL 1284
L+ + + A +M RH D + +L G+++ G D +L L
Sbjct: 175 LL----SELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENL 226
|
Length = 248 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-08
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 17/110 (15%)
Query: 1191 VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIA 1249
+DL+ G+ QR+AIA +L+NA L DE S+ ++ E A+ L G KT +++
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 1250 HRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYGKGLRQ 1299
H A++ ++ + + V EG + G+Y QP KG R+
Sbjct: 130 HDLAVLDYLSDRI------HVFEG-------EPGVYGIASQP---KGTRE 163
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 7e-08
Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 16/204 (7%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEWLRSQIGLVTQEPA 395
+A+VG +GSGKS+++ L+ PT G+V+ +G+ + L K E ++G + Q
Sbjct: 38 MAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHH 97
Query: 396 LL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454
LL + +N+A + E A LE + L+ E Q++
Sbjct: 98 LLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH--RANHRPSELSGGERQRV- 154
Query: 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRST--IIIARRLSLIRNAD 512
+IARA++ NP ++L DE TG LD ++ + L L + T +++ L L +
Sbjct: 155 -AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMS 213
Query: 513 YIAVMDEGRLFEMGTHDELLATGD 536
M +GRL EL G
Sbjct: 214 RQLEMRDGRL-----TAELSLMGA 232
|
Length = 233 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-08
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 29/243 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFY-----LTVPAKKAVALVGRNGSGKSSIIPLMERFYDP 363
+E RNV F+Y GF LT+ + + L+G NGSGKS++ L+ Y P
Sbjct: 323 LELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 364 TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIA 423
GE+LLDG+ + + E R V + L D L + A A
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLF------------DQLLGPEGKPANPA 423
Query: 424 HAHTFISSLEKGYETQV--GR-AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
++ L+ ++ ++ GR + L L++ QK +L++ A+ ILLLDE D
Sbjct: 424 LVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPH 483
Query: 481 AERAV-QEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLY 538
R Q L LL +G++ I+ +AD + M G+L E+ + A+ D
Sbjct: 484 FRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASRDAV 543
Query: 539 AEL 541
A
Sbjct: 544 ART 546
|
Length = 547 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 8e-08
Identities = 46/217 (21%), Positives = 92/217 (42%), Gaps = 59/217 (27%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IEL+N+ P ++L + S ++ G + + G SG+GKS++ + + +G++
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
+ L + Q P + T+RE +IY +
Sbjct: 59 GMPEG-----------EDLLFLPQRPYLPLGTLREQLIYPWDDV---------------- 91
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESS----R 1229
L+ G++QR+A AR++L + LDEA+S+++ ES +
Sbjct: 92 -------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 1230 VVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266
+++E T+I + HR ++ + D ++ L+G
Sbjct: 133 LLKELGITVIS-------VGHRPSLWKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 59/230 (25%), Positives = 110/230 (47%), Gaps = 24/230 (10%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF--YDPVAGQVLLDGRDLKLYNL 1125
E +L +L +N G+ A++G +GSGKST+ +I Y + G +L G + L
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI-LDLE 77
Query: 1126 RWLRNHLG--LVQQEPIIFSTTIRENIIYARHNA--SEAEVKEAARIANAHHFISSLPHG 1181
R HLG L Q PI + + +N+ + E + F+ +
Sbjct: 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE----FLEIINEK 133
Query: 1182 YDTHVGM------RGVD--LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
VGM R V+ + G+K+R I ++ L ++ + +LDE S ++ ++ +++ E
Sbjct: 134 LKL-VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 1234 ALDTLIMGNKTTILIAHRAAMMRHV--DNIVVLNGGRIVEEGTHDSLLAK 1281
++ L+ + ILI H ++ ++ D + V+ G+I++ G D+ LAK
Sbjct: 193 GINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG--DAELAK 240
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-07
Identities = 49/235 (20%), Positives = 106/235 (45%), Gaps = 38/235 (16%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR-WLR 1129
+ + S V G+ + + G+ G+G++ + + +G++LLDG+ +++ + R ++
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 1130 NHLGLV----QQEPIIFSTTIRENIIYARHNA-------SEAEVKEAARIANAHHFISSL 1178
+ V + E ++ +I ENI A + + A +I L
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAE-----RYIRRL 388
Query: 1179 ---PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE----SESSRVV 1231
+ +G L+ G +Q++ +AR + + +L+LDE + I+ +E R++
Sbjct: 389 RIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444
Query: 1232 QEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIV-----EEGTHDSLLA 1280
+E K ++I+ + + D I+V+ GRIV EE T ++++A
Sbjct: 445 RELAA----EGKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMA 495
|
Length = 500 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 19/232 (8%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I+ + Y + L L P + + L+G +G+GKSS++ ++ P G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 369 LLDGE--------NIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEA 419
+ G + K ++ LR +G+V Q+ L L+++ N+ L ++
Sbjct: 60 NIAGNHFDFSKTPSDKAIRE--LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ 117
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
A A A + L + R L L+ Q+ +++IARA+++ P +LL DE T LD
Sbjct: 118 AL-ARAEKLLERLR--LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 480 E-AERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529
E + V +L G + +I+ + + R A + M+ G + E G
Sbjct: 175 EITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 27/211 (12%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPT----LGEVLLDGENIKNLKLEWLRSQIGLVTQEPA 395
+A++G +G+GK++++ + F P G VLL+G I + +R+ V Q+
Sbjct: 54 LAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDL 109
Query: 396 LL-SLSIRDNIAY------GRDATLDQIEEAAKIAHAHTFIS--SLEKGYETQVGRAGL- 445
+ +L++R+++ + R T + K + L K T++G G
Sbjct: 110 FIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLRKCANTRIGVPGRV 164
Query: 446 -ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD-FEAERAVQEALDLLMLGRSTIIIAR 503
L+ ++ +L+ A +L +P +L DE T GLD F A VQ L G++ I
Sbjct: 165 KGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
Query: 504 RLS--LIRNADYIAVMDEGRLFEMGTHDELL 532
+ S L D I +M EGR+ +G+ D+ +
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAV 255
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-07
Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 54/245 (22%)
Query: 1066 RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKS-TIISLIERFYDPVAGQV-----LLDGRD 1119
+ ++ + N S + G+T+A+VG SGSGKS T ++L+ R + G V LL R
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRS 84
Query: 1120 LKLYNL--------RWLRN-HLGLVQQEPI-----IFST--TIRENIIYARHNASEAEVK 1163
++ L R +R + ++ QEP+ +F+ I E+I + + E +
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144
Query: 1164 EA------ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLD 1217
EA RI A +S PH L+ G +QR+ IA + +L+ D
Sbjct: 145 EAKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 1218 EASSSIES-------ESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRI 1269
E +++++ + +V+Q+ + MG I I H ++ + D ++V+ G
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQKEMS---MG---VIFITHDMGVVAEIADRVLVMYQGEA 247
Query: 1270 VEEGT 1274
VE G+
Sbjct: 248 VETGS 252
|
Length = 623 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 61/210 (29%), Positives = 95/210 (45%), Gaps = 32/210 (15%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE------VLLDGENIKNLKLEWLRS 385
LT+PA+ A+ GR+G+GK+S+I + P G VL D E L E +
Sbjct: 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE--KR 76
Query: 386 QIGLVTQEPALLS-LSIRDNIAYG----RDATLDQIEEAAKIAHAHT-FISSLEKGYETQ 439
+IG V Q+ L +R N+ YG A D+I I + SL G
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGG---- 132
Query: 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTI 499
E+Q++ +I RA+L P +LL+DE LD +R + L+ L +
Sbjct: 133 ---------EKQRV--AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP 181
Query: 500 IIARRLSL---IRNADYIAVMDEGRLFEMG 526
I+ SL +R AD + V+++G++ G
Sbjct: 182 ILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-07
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 24/214 (11%)
Query: 1072 LSNFSLKVN-----GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL----KL 1122
L + L VN G T A+ G SG+GK+++I+ I P G+++L+GR L K
Sbjct: 10 LGDLCLTVNLTLPAQGIT-AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKG 68
Query: 1123 YNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHG 1181
L + +G V Q+ +F +R N+ Y + A+ + + + P
Sbjct: 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG- 127
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
L+ G+KQR+AI R +L +LL+DE +S++ R + L+ L
Sbjct: 128 ----------SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE 177
Query: 1242 NKTTIL-IAHRA-AMMRHVDNIVVLNGGRIVEEG 1273
IL ++H ++R D +VVL G++ G
Sbjct: 178 INIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 48/232 (20%)
Query: 1067 PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP----VAGQVLLDGRDLKL 1122
+ LV SL + G+ +A+VG SGSGKS + AG+VLLDG+ +
Sbjct: 15 AQPLV-HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 1123 YNLRWLRNHLGLVQQEPIIFSTTIRENIIYARH----------NASEAEVKEAARIANAH 1172
LR + + Q P + +AR +A+ EA + NA
Sbjct: 74 CALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
+ P +++ G QR+ IA +L AP ++ DE ++ ++ V Q
Sbjct: 132 RVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDV----VAQ 176
Query: 1233 EALDTLIMGNKTTILIAHRAAMM-----------RHVDNIVVLNGGRIVEEG 1273
+ L+ ++ RA M R D++ V++ GRIVE+G
Sbjct: 177 ARILDLLES-----IVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
Length = 254 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 41/234 (17%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL------ 1125
+ S + G+ + +VG SGSGK+T+++ + P AG+V RD +L +L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1126 --RWL-RNHLGLVQQEP---IIFSTTIRENI------IYARH--NASEAEVKEAARIANA 1171
R L R G V Q P + + NI + ARH + R+
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
I LP + GM+ QR+ IAR ++ + ++ +DE + ++ V
Sbjct: 142 AARIDDLPTTFSG--GMQ---------QRLQIARNLVTHPRLVFMDEPTGGLDVS----V 186
Query: 1232 QEALDTLIMG-----NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLL 1279
Q L L+ G +++ H A+ R + ++V+ GR+VE G D +L
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240
|
Length = 258 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 36/214 (16%)
Query: 1064 PSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKST---IISLIERFYDPVAGQVLLDGRDL 1120
R ++ +L +FS V G+ V V+G GSG ST ++ V G + +G
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74
Query: 1121 KLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFISSLP 1179
K + ++ + V +E + F T T+RE + + A + F+
Sbjct: 75 KEFAEKY-PGEIIYVSEEDVHFPTLTVRETL-------------DFALRCKGNEFV---- 116
Query: 1180 HGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI 1239
RG+ + G+++R++IA ++ A +L D ++ ++S ++ + + + T+
Sbjct: 117 ---------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA 165
Query: 1240 MGNKTTILIAHRAA---MMRHVDNIVVLNGGRIV 1270
KTT ++ A + D ++VL GR +
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 44/204 (21%), Positives = 86/204 (42%), Gaps = 31/204 (15%)
Query: 1072 LSNFSLKVNGG-----QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR 1126
L F+L+V GG + + ++G +G GK+T I ++ P G + ++ + Y
Sbjct: 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-YK-- 66
Query: 1127 WLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSL--PHGYDT 1184
Q + T+R+ + +F + + P +
Sbjct: 67 --------PQYIKADYEGTVRDLL-----------SSITKDFYTHPYFKTEIAKPLQIEQ 107
Query: 1185 HVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGN-K 1243
+ +L+ G+ QR+AIA + K+A I LLDE S+ ++ E + + + N K
Sbjct: 108 ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEK 167
Query: 1244 TTILIAHRAAMMRHV-DNIVVLNG 1266
T ++ H M+ ++ D ++V G
Sbjct: 168 TAFVVEHDIIMIDYLADRLIVFEG 191
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-07
Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 66/196 (33%)
Query: 1082 GQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL-LDGRDLKLYNLRWLRNHLGLVQQEPI 1140
G+ + +VG GSGK+T+ + R P G V+ +DG D+ L L +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 1141 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200
VG + + + R
Sbjct: 54 ---------------------------------------------VGGKKASGSGELRLR 68
Query: 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDT------LIMGNKTTILIAHR--- 1251
+A+A +L+LDE +S +++E ++ + N T IL +
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 1252 ---AAMMRHVDNIVVL 1264
A + R D +VL
Sbjct: 129 LGPALLRRRFDRRIVL 144
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 20/233 (8%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ F V Y +I L L + + V L+G NG+GK++++ + T G +
Sbjct: 6 LSFDKVSAHY---GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 369 LLDGENIKNLKL-EWLRSQIGLVTQEPALLS-LSIRDNIAYGRD-ATLDQIEEAAKIAHA 425
+ DG++I + + + +R + +V + + S +++ +N+A G A DQ +E +I
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWV 120
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
+ L +E ++ RAG EQ++ L+I RA++ P +LLLDE + GL A +
Sbjct: 121 YELFPRL---HERRIQRAGTMSGGEQQM-LAIGRALMSQPRLLLLDEPSLGL---APIII 173
Query: 486 QEALDLLMLGRS---TIIIARRLS--LIRNADYIAVMDEGRLFEMGTHDELLA 533
Q+ D + R TI + + + ++ AD V++ G + T D LLA
Sbjct: 174 QQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 44/229 (19%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385
+L+ L +P+ + VAL+G +GSGK++++ ++ T G + G ++ L
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DR 74
Query: 386 QIGLVTQEPALLS-LSIRDNIAYGR--------------DATLDQIEEAAKIAH-AHTFI 429
++G V Q AL +++ DNIA+G A + Q+ E ++AH A +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 430 SSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE------- 482
+ L G QK ++++ARA+ + P ILLLDE G LD +
Sbjct: 135 AQLSGG---------------QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL 179
Query: 483 RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
R + E L S + + + AD + VM +G + + GT D++
Sbjct: 180 RQLHEELKF----TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
+ +P A++G NG GKS+++ + R P G V LDGE+I++ + + +IGL+
Sbjct: 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87
Query: 392 QEPALL-SLSIRDNIAYGR-------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443
Q +++++ +A GR + EEA A T I+ L ++
Sbjct: 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-------ADQS 140
Query: 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIAR 503
L+ Q+ + IA + +I+LLDE T LD + + E L L + + A
Sbjct: 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAV 200
Query: 504 RLSL---IRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL--LKC 544
L R A ++ + EG++ G E++ T +L + L+C
Sbjct: 201 LHDLNQACRYASHLIALREGKIVAQGAPKEIV-TAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 19/215 (8%)
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN--- 1124
E+ +L+ L V G+T+A++G SGSGKST+++++ D +G+V L G+ L +
Sbjct: 22 ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81
Query: 1125 ---LRWLRNHLGLVQQEPIIFST-TIRENIIYAR--HNASEAEVKEAARIANAHHFISSL 1178
LR H+G V Q ++ T EN+ S + + A+ + L
Sbjct: 82 RAKLR--AKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK-----ALLEQL 134
Query: 1179 PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTL 1238
G + L+ G++QR+A+AR +L DE + +++ ++ + + L +L
Sbjct: 135 --GLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192
Query: 1239 IMGNKTT-ILIAHRAAMMRHVDNIVVLNGGRIVEE 1272
+ TT IL+ H + D + L G++ EE
Sbjct: 193 NREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 37/218 (16%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL---------RSQIGLV 390
+ +VG +GSGKS+++ + P G + L+L L R++ G V
Sbjct: 32 LGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFV 91
Query: 391 TQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAH------TFISSLEKGYETQVGRAG 444
Q P RD + A + E I H T LE+ E R
Sbjct: 92 HQNP-------RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEE-VEIDPTRID 143
Query: 445 ---LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALDLLM-----LG 495
A + + +L IAR ++ P ++ +DE TGGLD +VQ LDLL LG
Sbjct: 144 DLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV----SVQARLLDLLRGLVRDLG 199
Query: 496 RSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532
+ II+ L + R A + VM +GR+ E G D++L
Sbjct: 200 LAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVL 237
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-07
Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 21/209 (10%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I N+ S + +LS V + + + G +G+GK+S++ L +
Sbjct: 393 ITLENL--SLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLR--------ALAGL 442
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDA---TLDQIEEAAKIAHA 425
G ++ + S + + Q P L ++R+ + Y A + ++
Sbjct: 443 WPWGSGRISMPAD---SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGL 499
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
L++ R L+ ++ +L+ AR +L P + LDE T LD E E +
Sbjct: 500 GDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRL 554
Query: 486 QEALDLLMLGRSTIIIARRLSLIRNADYI 514
+ L + + I + R +L
Sbjct: 555 YQLLKEELPDATVISVGHRPTLWNFHSRQ 583
|
Length = 604 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 4e-07
Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 36/216 (16%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF--------YDPVAGQVLLDGRDLKL 1122
VL N +L++ G VAVVG SG+GK+T++ +I Y P +G+V + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 1123 YNLRWLRNHLGLVQQEPIIFSTTIRENI--IYARHNASEAEVKEAARIANAHHFISSLPH 1180
EP TI E++ NA+ + A +++A +
Sbjct: 458 LIPGEY---------EPEFGEVTILEHLRSKTGDLNAAVEILNRAG-LSDAVLYRRKFS- 506
Query: 1181 GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM 1240
+L+ GQK+R +A+++ + +LL+DE ++ ++ ++ V + L
Sbjct: 507 -----------ELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555
Query: 1241 GNKTTILIA-HRAAMMRHV--DNIVVLN-GGRIVEE 1272
T+++ HR + + D ++++ G V E
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVNE 591
|
Length = 593 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 30/230 (13%)
Query: 320 SRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE--NIKN 377
+ P + LSG L V + +ALVG NG+GKS+++ ++ Y G +L G+
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72
Query: 378 LKLEWLRSQ---IGLVTQEPALL-SLSIRDNIAYGRDAT--LDQIEEAAKIAHAHTFISS 431
K SQ IG++ QE L+ L+I +NI GR+ +I+ A A ++
Sbjct: 73 PK----SSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLAR 128
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL-DFEAERAVQEALD 490
L + + L++ E+Q ++ IA+ + ++++DE T L D E E + +
Sbjct: 129 LNLRFSSDKLVGELSIGEQQMVE--IAKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186
Query: 491 LLMLGRSTIIIARRLSLI----------RNADYI-----AVMDEGRLFEM 525
L GR + I+ RL I R+ +I A + E L EM
Sbjct: 187 LKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEM 236
|
Length = 501 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 61/226 (26%), Positives = 99/226 (43%), Gaps = 32/226 (14%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM--ERFYDPTLGEVLLDGENIKNLKLEW 382
IL G L V + A++G NGSGKS++ + Y+ T G V G+++ L E
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 383 LRSQ-IGLVTQEPA---------LLSLSIRDNIAYGRDATLDQ------IEEAAKIAHAH 426
+ I + Q P L ++ +Y LD+ +EE KIA
Sbjct: 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEE--KIALLK 132
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
L + VG +G +K + I + +L P + +LDE GLD +A + V
Sbjct: 133 MPEDLLTR--SVNVGFSG-----GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVA 185
Query: 487 EALDLLMLGRSTIIIA----RRLSLIRNADYIAVMDEGRLFEMGTH 528
+ ++ L G+ + II R L I+ DY+ V+ +GR+ + G
Sbjct: 186 DGVNSLRDGKRSFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDF 230
|
Length = 248 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 5e-07
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IEL+N+ Y + +L + SL +N G + +VG +G+GKST++ LI +P G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 1114 LLDGR 1118
Sbjct: 58 TWGST 62
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 6e-07
Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSII-PLMERFYDPTL-GEVLLDGENIKNLKL 380
E IL+G + +A++G +GSGKS+++ L R G +L + L
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATL-DQIEEAAKIAHAHTFISSL--EKGY 436
+ + G VTQ+ L L++R+ + + L + + KI A + IS L K
Sbjct: 140 K----RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195
Query: 437 ETQVGRA---GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE-RAVQEALDLL 492
T +G + G++ E +++ SIA +L+NPS+L+LDE T GLD A R V L
Sbjct: 196 NTIIGNSFIRGISGGERKRV--SIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253
Query: 493 MLGRSTIIIARRLS--LIRNADYIAVMDEGR-LFEMGTHDEL 531
G++ + + S + + D + V+ EGR LF D +
Sbjct: 254 QKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295
|
Length = 659 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 7e-07
Identities = 52/249 (20%), Positives = 110/249 (44%), Gaps = 14/249 (5%)
Query: 1044 AVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIE 1103
A+K P + GS+ F + + + + S ++ G+ V +G +G+GKST + ++
Sbjct: 16 AIKEPGLKGSLNH----FFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71
Query: 1104 RFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLV--QQEPIIFSTTIRENIIYARHNASEAE 1161
P +G+V ++G+D +LR +GLV Q+ + + +++ + +
Sbjct: 72 GLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPD 130
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
+ A R+ L +R + L GQ+ R +A +L +L LDE +
Sbjct: 131 DEFAERLD---FLTEILDLEGFLKWPVRKLSL--GQRMRAELAAALLHPPKVLFLDEPTV 185
Query: 1222 SIESESSRVVQEALDTLIMGNKTTILIAHR--AAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
++ + ++E L + T+L+ + D +++++ G++V +GT L
Sbjct: 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
Query: 1280 AKNGLYVRL 1288
+ G Y
Sbjct: 246 EQFGPYKEF 254
|
Length = 325 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL--DGENIKNLK- 379
+P+L LTV A + VAL G +G+GKS+++ + Y P G +L+ +G + +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 380 -----LEWLRSQIGLVTQ----EPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFIS 430
LE R IG V+Q P + +L + R + A+ A I
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 431 SLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
E+ + + A + E+Q++ +IAR + + ILLLDE T LD + V E +
Sbjct: 140 --ERLW--HLPPATFSGGEQQRV--NIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 48/207 (23%)
Query: 1065 SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG----RDL 1120
SR E V V+ G+ + V G +G+GK+T++ ++ +GQ+ +DG R
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 1121 KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPH 1180
+ + +L HL ++ + ST EN+ HF+ L H
Sbjct: 80 RSRFMAYL-GHLPGLKAD---LSTL--ENL----------------------HFLCGL-H 110
Query: 1181 GYD---------THVGMRGVD------LTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
G VG+ G + L+ GQK+R+A+AR+ L AP+ LLDE ++++
Sbjct: 111 GRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRA 1252
E +V + + G ++ H A
Sbjct: 171 EGITLVNRMISAHLRGGGAALVTTHGA 197
|
Length = 214 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 9e-07
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 35/185 (18%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL---KLEW 382
++ T+ + + LVG +GSGKS+ + R + GE+ DG+ + NL +L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 383 LRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGR 442
+R +I +V Q+P SL+ R N+ L IEE ++ +S+ ++ E QV
Sbjct: 360 VRHRIQVVFQDPNS-SLNPRLNV-------LQIIEEGLRVHQPT--LSAAQR--EQQVIA 407
Query: 443 A----GL----------ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-E 487
GL + Q+ +++IARA++L PS+++LDE T LD + VQ +
Sbjct: 408 VMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQ 463
Query: 488 ALDLL 492
L LL
Sbjct: 464 ILALL 468
|
Length = 529 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 13/200 (6%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
VP + L+G NG+GK++ ++ +PT GE+ +G + ++++IG +
Sbjct: 23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRIGYLP 78
Query: 392 QEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLE-KGYETQVGRAGLALTE 449
+E L +++ D + Y A L + +A ++ LE G +T+ + L+
Sbjct: 79 EERGLYPKMTVEDQLKYL--AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKE-LSKGN 135
Query: 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIARRLSLI 508
+QKI+ AV+ P +L+LDE GLD +++A +L G + I + R+ +
Sbjct: 136 QQKIQFIS--AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193
Query: 509 -RNADYIAVMDEGRLFEMGT 527
D + ++ +G+ GT
Sbjct: 194 EELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 67/219 (30%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM--------ERF 360
IE N+ S + +L + + + G +G+GKSS+ + R
Sbjct: 1 IELENL--SLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 361 YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAA 420
P ++L + Q P L ++R+ + Y D L
Sbjct: 59 GMPEGEDLLF-------------------LPQRPYLPLGTLREQLIYPWDDVLS------ 93
Query: 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
E+Q+ L+ AR +L P + LDE T LD E
Sbjct: 94 --------------------------GGEQQR--LAFARLLLHKPKFVFLDEATSALDEE 125
Query: 481 AERAVQEALDLLMLGRSTII-IARRLSLIRNADYIAVMD 518
+E + + L L T+I + R SL + D + +D
Sbjct: 126 SEDRLYQLLKELG---ITVISVGHRPSLWKFHDRVLDLD 161
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 34/224 (15%)
Query: 1074 NFSLKVNGGQTVAVVGVSGSGKS----TIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129
S V G+ V +VG SGSGKS I+ LI+ +A ++ +G+DL+ + + R
Sbjct: 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERR 84
Query: 1130 NHLG----LVQQEPIIF---STTIRENIIYA---RHNASEAEVKEAA-------RIANAH 1172
N +G ++ Q+P+ T+ I+ A ++ ++ A I +
Sbjct: 85 NLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA 144
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE-SESSRVV 1231
+ PH L+ G QR+ IA + +L+ DE +++++ + ++++
Sbjct: 145 SRLDVYPH-----------QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQII 193
Query: 1232 QEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
+ L+ N +LI H A++ I+V+ G++VE G
Sbjct: 194 ELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237
|
Length = 326 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 34/238 (14%)
Query: 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369
F + ++ P + L A + AL+G NG+GKS+++ ++ Y P G +L
Sbjct: 6 SFDGIGKTF---PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 370 LDGE--NIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAH 426
+DG+ + L + + ++ QE L+ +++ +N+ G+ + H
Sbjct: 63 IDGQEMRFASTT-AALAAGVAIIYQELHLVPEMTVAENLYLGQ------------LPHKG 109
Query: 427 TFISSLEKGYET--QVGRAGLALTEEQKIK-LS--------IARAVLLNPSILLLDEVTG 475
++ YE Q+ G+ + + +K LS IA+A+ N ++ DE T
Sbjct: 110 GIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTS 169
Query: 476 GLDF-EAERAVQEALDLLMLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDEL 531
L E E+ + +L GR + ++ R+ I D I V +GR T D++
Sbjct: 170 SLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 51/238 (21%), Positives = 102/238 (42%), Gaps = 24/238 (10%)
Query: 1045 VKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER 1104
K P + GS++ EV L S + G+ V +G +G+GK+T + ++
Sbjct: 14 SKEPGLIGSLK----SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG 69
Query: 1105 FYDPVAGQVLLDGRDLKLYNLRWLRNHLGLV--QQEPIIFSTTIRE--NIIYARHNASEA 1160
P +G+V + G ++LR +G+V Q+ + + + + ++ A ++ A
Sbjct: 70 LLQPTSGEVRVAGLVPWKRRKKFLRR-IGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPA 128
Query: 1161 EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
K+ L +R + L GQ+ R IA +L IL LDE +
Sbjct: 129 RFKK-----RLDELSELLDLEELLDTPVRQLSL--GQRMRAEIAAALLHEPEILFLDEPT 181
Query: 1221 SSIESESSRVVQEALDTLIMGNKTTILI-AHRAAMMRHV----DNIVVLNGGRIVEEG 1273
++ + ++ L TT+L+ +H M+ + ++V++ GR++ +G
Sbjct: 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHY---MKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 2e-06
Identities = 62/276 (22%), Positives = 112/276 (40%), Gaps = 65/276 (23%)
Query: 1020 RRKSLI-SVFEIIDRVPKID--------------PDDSSAVKPPNVYGSIELKNVDFCYP 1064
+R SL+ S + +DR+ +D PDD PP I + F YP
Sbjct: 466 KRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPG--PP----IISFSDASFGYP 519
Query: 1065 SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN 1124
P L+ N + ++ +A+VG +G GKSTI+ LI P +G V
Sbjct: 520 GGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV----------- 566
Query: 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDT 1184
F + ++++H+ ++ + F
Sbjct: 567 -----------------FRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 609
Query: 1185 HVGMRGVD----------LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEA 1234
H+G GV L+ GQK R+A A++ K ILLLDE S+ ++ ++ V+
Sbjct: 610 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA---VEAL 666
Query: 1235 LDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRI 1269
+ L++ ++++H ++ VD + V++ G++
Sbjct: 667 IQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 59/256 (23%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131
L N + + G V GVSGSGKS++I + Y +A ++ L ++ H
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLI--NDTLYPALARRLHLKKEQPGNHDRIEGLEH 68
Query: 1132 LG---LVQQEPI-------------IFSTTIRENIIY------ARHNASEAEVK-EAARI 1168
+ ++ Q PI +F IRE ++ R+N EV+ + I
Sbjct: 69 IDKVIVIDQSPIGRTPRSNPATYTGVF-DEIRE--LFCEVCKGKRYNRETLEVRYKGKSI 125
Query: 1169 AN--------AHHFISSLPH-------------GYDTHVGMRGVDLTPGQKQRIAIARVV 1207
A+ A F ++P GY +G L+ G+ QRI +A+ +
Sbjct: 126 ADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLAKEL 184
Query: 1208 LKNAP---ILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVL 1264
K + + +LDE ++ + + + E L L+ T ++I H +++ D I+ L
Sbjct: 185 SKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDL 244
Query: 1265 ------NGGRIVEEGT 1274
GG++V GT
Sbjct: 245 GPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 3e-06
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 30/212 (14%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--LEWLRSQIGL 389
V A + V + G G+G+S ++ + P G +LL+G+++ E R +
Sbjct: 279 FEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAY 338
Query: 390 VTQEP----ALLSLSIRDNIAYGRDAT----------LDQIEEAAKIAHAHTFISSLEKG 435
V ++ +L LS+ +N+ GR I + A+ L +
Sbjct: 339 VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR---------ELIEE 389
Query: 436 YETQVGRAGL---ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DL 491
++ + +L+ + KL +AR + P +L+ + T GLD A + E L +L
Sbjct: 390 FDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449
Query: 492 LMLGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522
G++ ++I+ L I +D IAV+ EGR+
Sbjct: 450 RDAGKAVLLISEDLDEILELSDRIAVIYEGRI 481
|
Length = 501 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 63/236 (26%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-LDGENIKNLKLEWLRSQIG-- 388
+ +P + G +GSGKSS+I + Y P L L L E N I
Sbjct: 16 VDIPLGVLTCVTGVSGSGKSSLI--NDTLY-PALARRLHLKKEQPGNHDRIEGLEHIDKV 72
Query: 389 -LVTQEPALLSLSIRDNIA---------------------YGRDATLD------------ 414
++ Q P + + R N A Y R+ TL+
Sbjct: 73 IVIDQSP--IGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRE-TLEVRYKGKSIADVL 129
Query: 415 --QIEEAAK----IAHAHTFISSLEK---GYETQVGRAGLALT--EEQKIKLSIARAVLL 463
+EEA + I + +L GY ++G+ L+ E Q+IKL+ L
Sbjct: 130 DMTVEEALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIKLA---KELS 185
Query: 464 NPS----ILLLDEVTGGLDFEAERAVQEALD-LLMLGRSTIIIARRLSLIRNADYI 514
S + +LDE T GL F + + E L L+ G + ++I L +I+ AD+I
Sbjct: 186 KRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 50/253 (19%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++LK +D + P V LS +L V G+ +A+VG +G+GKST++ ++ Y AG +
Sbjct: 5 LQLKGID---KAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI 61
Query: 1114 LLDGRDLKLYNLRWLRNH-LGLVQQE-PIIFSTTIRENIIYARH--NA----------SE 1159
L G+++ + + +G++ QE +I TI ENI R N +E
Sbjct: 62 LYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE 121
Query: 1160 AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE- 1218
A+ K AR+ +L D VG +L+ G++Q + IA+V+ + ++++DE
Sbjct: 122 AD-KLLARL--------NLRFSSDKLVG----ELSIGEQQMVEIAKVLSFESKVIIMDEP 168
Query: 1219 --ASSSIESES-SRVVQEALDTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGG---- 1267
A + E+ES RV++E L + + I+HR ++ + D++ V G
Sbjct: 169 TDALTDTETESLFRVIRE----LKSQGRGIVYISHR---LKEIFEICDDVTVFRDGQFIA 221
Query: 1268 -RIVEEGTHDSLL 1279
R V + T DSL+
Sbjct: 222 EREVADLTEDSLI 234
|
Length = 501 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-06
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 1192 DLTPGQKQRIAIARVVLKNAPILLL-DEASSSIESESSRVVQEALDTLIMGNKTTI-LIA 1249
+LT G+ Q++ IA + L N P LL+ DE ++++E + + L L N TTI LI+
Sbjct: 158 ELTEGECQKVMIA-IALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLIS 216
Query: 1250 HRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLA 1280
H M+ D I VL G+ VE L+
Sbjct: 217 HDLQMLSQWADKINVLYCGQTVETAPSKELVT 248
|
Length = 330 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 48/210 (22%), Positives = 79/210 (37%), Gaps = 52/210 (24%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131
L N + + V V GVSGSGKST+++ E Y +G+ L L ++ RN
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLYA--SGKARLIS-FLPKFS----RNK 61
Query: 1132 LGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGV 1191
L + Q I + Y + +
Sbjct: 62 LIFIDQ----LQFLIDVGLGYLTLG----------QKLST-------------------- 87
Query: 1192 DLTPGQKQRIAIARVVLKNAP--ILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIA 1249
L+ G+ QR+ +A + P + +LDE S+ + + + E + LI T ILI
Sbjct: 88 -LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIE 146
Query: 1250 HRAAMMRHVDNIVVL------NGGRIVEEG 1273
H ++ D I+ +GG++V G
Sbjct: 147 HNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 31/233 (13%)
Query: 1067 PEVLVLSNFSLKVNGGQTVAVVGVSGSGKST----IISLIERFYDPVAGQVLLDGRDLK- 1121
+L + G+ V+G GSG ST I S + F+ V G + DG +
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131
Query: 1122 ---------LYNLRWLRNHLG-LVQQEPIIFSTTIR--ENIIYARHNASEAEVKEAARIA 1169
+YN H L E + F+ + +N R + E A IA
Sbjct: 132 IKKHYRGDVVYNAE-TDVHFPHLTVGETLDFAARCKTPQN----RPDGVSREEY-AKHIA 185
Query: 1170 NAHHFISSLPHGYDTHVG---MRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+ + L H +T VG +RGV + G+++R++IA L A I D A+ ++S
Sbjct: 186 DVYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSA 243
Query: 1227 SSRVVQEALDTLIMGNKTTILIA-HRAA--MMRHVDNIVVLNGGRIVEEGTHD 1276
++ AL T TT L+A ++ + D ++VL G + G D
Sbjct: 244 TALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPAD 296
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 5e-06
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 27/230 (11%)
Query: 1062 CYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRD-L 1120
R V + + S +V G+ V + GV+G+G+S ++ I P +G++LL+G+D L
Sbjct: 265 VKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVL 323
Query: 1121 KLYNLRWLRNH-LGLVQQEPI----IFSTTIRENIIYARHNASEA---------EVKEAA 1166
+ R R L V ++ + ++ EN++ RH+ +++ A
Sbjct: 324 GRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA 383
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
R + D L+ G +Q++ +AR + + +L+ + + ++
Sbjct: 384 RELIEEFDV--RAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVG 437
Query: 1227 SSRVVQEALDTLIMGNKTTILIA---HRAAMMRHVDNIVVLNGGRIVEEG 1273
+ + E L L K +LI+ + D I V+ GRIV
Sbjct: 438 AIEFIHERLLELRDAGKAVLLISEDLDEI--LELSDRIAVIYEGRIVGIV 485
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-06
Identities = 54/243 (22%), Positives = 116/243 (47%), Gaps = 23/243 (9%)
Query: 309 IEFRNVYFSYLS--RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
I+ RNV Y+S R + + L V + +VG +G+GK+++ ++ +PT G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 367 E--VLLDGENIKNLKLEWL-----RSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEE 418
E V + E + K + IG++ QE L ++ DN+ L+ +E
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLT--EAIGLELPDE 397
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGL-----ALTEEQKIKLSIARAVLLNPSILLLDEV 473
A++ T G++ + L L+E ++ ++++A+ ++ P I++LDE
Sbjct: 398 LARMKAVITLKMV---GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP 454
Query: 474 TGGLDFEAERAVQEAL--DLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530
TG +D + V ++ + ++ II++ + + + D A+M +G++ ++G +E
Sbjct: 455 TGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514
Query: 531 LLA 533
++
Sbjct: 515 IVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 61/240 (25%), Positives = 115/240 (47%), Gaps = 37/240 (15%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
++ RNV +Y ++ I L + + V VG +G GKS+++ ++ D T G+
Sbjct: 3 SVTLRNVTKAY---GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG----------RDATLDQI 416
+ + + + ++ +G+V Q AL LS+ +N+++G + ++Q+
Sbjct: 60 LFIGEKRMNDV--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117
Query: 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
E ++AH L+ R AL+ Q+ +++I R ++ PS+ LLDE
Sbjct: 118 AEVLQLAHL------LD--------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
Query: 477 LDFEAERAVQEALDLL----MLGRSTIIIAR-RLSLIRNADYIAVMDEGRLFEMGTHDEL 531
LD A VQ +++ LGR+ I + ++ + AD I V+D GR+ ++G EL
Sbjct: 164 LD--AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-06
Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 18/238 (7%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL--GEVLLDGENIKNLKL-EWL 383
L G L V + V L G NG+GKS+++ ++ Y GE+ G +K + +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 384 RSQIGLVTQEPALL-SLSIRDNIAYGRDATL--DQIEEAAKIAHAHTFISSLE---KGYE 437
R+ I ++ QE L+ LS+ +NI G + TL ++ A A + L+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL-DFEAERAVQEALDLLMLGR 496
VG G Q+ + IA+A+ +L+LDE + L + E E + DL G
Sbjct: 137 RPVGDYGGG----QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 497 STIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD-ELLATGDLYAELLKCEEAAKLPR 552
+ + I+ +L+ ++ D I V+ +G+ + T D ++ D+ ++ E + P
Sbjct: 193 ACVYISHKLNEVKAVCDTICVIRDGQ--HVATKDMSTMSEDDIITMMVGREITSLYPH 248
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-06
Identities = 54/214 (25%), Positives = 104/214 (48%), Gaps = 16/214 (7%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL-DGENIKNL------KLEWLR 384
L + + L+G +GSGKS+++ + + G VL+ DG+ ++ L LR
Sbjct: 45 LDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLR 104
Query: 385 S-QIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGR 442
+ ++ +V Q+ ALL ++ +N+A+G + E K + L + + + G
Sbjct: 105 THRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGE 164
Query: 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTII 500
L+ +Q++ L ARA ILL+DE LD +Q+ L L L ++ +
Sbjct: 165 --LSGGMQQRVGL--ARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVF 220
Query: 501 IARRL-SLIRNADYIAVMDEGRLFEMGTHDELLA 533
++ L ++ + IA+M+ GR+ + GT +E++
Sbjct: 221 VSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 66/252 (26%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
++L+ V Y + V+ L V G+ + +VG SG GKST++ ++ +G+
Sbjct: 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEP------IIFST-------TIRENIIYARHNA-- 1157
+ + GR + N L EP ++F ++REN+ Y
Sbjct: 61 IWIGGRVV---------NEL-----EPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM 106
Query: 1158 SEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213
+AE V EAARI + P +L+ GQ+QR+A+ R +++ +
Sbjct: 107 PKAEIEERVAEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAV 155
Query: 1214 LLLDEASSSIESESSRV--------VQEALDTLIMGNKTTILIAH---RAAMMRHVDNIV 1262
L DE S++++ RV + L T T++ + H A M D +V
Sbjct: 156 FLFDEPLSNLDA-KLRVQMRLEIQRLHRRLKT------TSLYVTHDQVEA--MTLADRVV 206
Query: 1263 VLNGGRIVEEGT 1274
V+NGG + GT
Sbjct: 207 VMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 8e-06
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
Query: 1065 SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN 1124
S P V L N +LKV A++G +G+GKST++ + Y +G +L G+++ +
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 1125 LR-WLRNHLGLVQQE-PIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGY 1182
+ L N + +V QE ++ ++ +N+ R+ V + + L
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL--DI 124
Query: 1183 DTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
D + L+ Q Q I IA+ NA I+++DE +SS+
Sbjct: 125 DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 56/252 (22%), Positives = 113/252 (44%), Gaps = 37/252 (14%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++++ V F +R + N SL V G+ A++G SG GK+T++ LI P G++
Sbjct: 8 VDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1114 LLDGRDL------KLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAA 1166
L DG ++ +LY +R + ++ Q +F+ + +N+ Y ++E
Sbjct: 65 LFDGENIPAMSRSRLYT---VRKRMSMLFQSGALFTDMNVFDNVAYP--------LREHT 113
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGV------DLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
++ + S VG+RG +L+ G +R A+AR + +++ DE
Sbjct: 114 QLPAP--LLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF 171
Query: 1221 SSIESESSRVVQEALDTLIMGNK----TTILIAHRAA-MMRHVDNIVVLNGGRIVEEGTH 1275
+ + V+ + + L N T ++++H ++ D+ ++ +IV G+
Sbjct: 172 VGQDPITMGVLVKLISEL---NSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSA 228
Query: 1276 DSLLAKNGLYVR 1287
+L A VR
Sbjct: 229 QALQANPDPRVR 240
|
Length = 269 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 55/227 (24%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---------EWLRSQIGLV 390
+ +VG +GSGK++++ + P G V + + L LR++ G V
Sbjct: 35 LGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFV 94
Query: 391 TQEPA---LLSLSIRDNIA----------YG--RDATLDQIEEAAKIAHAHTFISSLEKG 435
Q P + +S NI YG R D +EE
Sbjct: 95 HQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV---------------- 138
Query: 436 YETQVGRAG---LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALDL 491
E + R + + +L IAR ++ P ++ +DE TGGLD +VQ LDL
Sbjct: 139 -EIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV----SVQARLLDL 193
Query: 492 LM-----LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532
L LG + +I+ L++ R AD + VM +G++ E G D +L
Sbjct: 194 LRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVL 240
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 64/228 (28%), Positives = 98/228 (42%), Gaps = 57/228 (25%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL---------RSQIGLV 390
+ +VG +GSGK++++ + P GEV + + L L R++ G V
Sbjct: 35 LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFV 94
Query: 391 TQEPA---LLSLSIRDNIA----------YG--RDATLDQIEE----AAKIAHAHTFISS 431
Q P + +S NI YG R D +E AA+I T S
Sbjct: 95 HQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFS- 153
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALD 490
G Q +L IAR ++ +P ++ +DE TGGLD +VQ LD
Sbjct: 154 ---GGMQQ--------------RLQIARNLVTHPRLVFMDEPTGGLDV----SVQARLLD 192
Query: 491 LLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532
LL LG + +I+ L++ R A + VM +GR+ E G D++L
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240
|
Length = 258 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 54/241 (22%), Positives = 98/241 (40%), Gaps = 34/241 (14%)
Query: 1033 RVPKIDPDDSSAVKPPNVYGS---------IELKNVDFCYPSRPEVLVLSNFSLKVNGGQ 1083
RV +I+ V G I+ +N+ P+ +VL+ S S +V G
Sbjct: 422 RVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIES-LSFEVPSGN 479
Query: 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS 1143
+ + G +G GKS++ ++ + PV G L KL+ V Q P +
Sbjct: 480 NLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLF----------YVPQRPYMTL 528
Query: 1144 TTIRENIIYA-------RHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196
T+R+ IIY R S+ ++++ H + G+ V L+ G
Sbjct: 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDV-LSGG 586
Query: 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR 1256
+KQRIA+AR+ +LDE +S++ + + T ++HR ++ +
Sbjct: 587 EKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLWK 643
Query: 1257 H 1257
+
Sbjct: 644 Y 644
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 366 GEVLLDGENIK-NLKLEWLRSQIGLVTQEPA----LLSLSIRDNI---AYGRDATLDQIE 417
GE+ +DG+ +K + + I +V ++ + + + NI A R +I+
Sbjct: 318 GEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRID 377
Query: 418 EAAKIAHAHTFISSLE-KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
+AA++ I L+ K ++ A L+ +QK L A+ +LLNP IL+LDE T G
Sbjct: 378 DAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL--AKCLLLNPKILILDEPTRG 435
Query: 477 LDFEAERAVQEAL-DLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522
+D A+ + + + L+ G + I+I+ L + +D + VM EG+L
Sbjct: 436 IDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 48/195 (24%)
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
+P+L L+V A + V L G +GSGKS+++ + Y P G++L+ E EW
Sbjct: 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEG------EW 76
Query: 383 LRSQIGLVTQEPALLSLSIRDNIAY--------GRDATLDQIEEAAKIAHAHTFISSLEK 434
+ LVT EP + R I Y R + LD + E L +
Sbjct: 77 ----VDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL-----------LAR 121
Query: 435 GYETQVGRAG-------LALTEE------------QKIKLSIARAVLLNPSILLLDEVTG 475
G +V RA L L E ++ +++IAR +++ ILLLDE T
Sbjct: 122 GVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTA 181
Query: 476 GLDFEAERAVQEALD 490
LD V E +
Sbjct: 182 SLDATNRAVVVELIR 196
|
Length = 235 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
+K++L++A+ +L NP++LLLDE T LD E+ A++EAL
Sbjct: 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL 113
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 320 SRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE--NIKN 377
S P + L L V AL+G NG+GKS+++ + Y G +L G+ + K+
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 378 LKLEWLRSQIGLVTQEPAL-LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFI-SSLEKG 435
K E L + I +V QE L L S+ DN+ GR T + K+ I L+
Sbjct: 67 SK-EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID 125
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
+ + A L++++ Q I+ IA+A N I+++DE T L
Sbjct: 126 IDPRAKVATLSVSQMQMIE--IAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 66/245 (26%), Positives = 100/245 (40%), Gaps = 65/245 (26%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKS-------SIIPLMERFYDPTLGEVLLDGENIKN 377
P++ G LT+ + +ALVG +GSGKS I+P R T G VLLDG+ +
Sbjct: 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVR---QTAGRVLLDGKPV-- 71
Query: 378 LKLEWLRSQ-IGLVTQEP--------ALLSLSIRDNIAYGRDATLDQI---------EEA 419
LR + I + Q P + + + +A G+ A + E A
Sbjct: 72 -APCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA 130
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
A++ + F S G Q ++ IA A+L ++ DE T LD
Sbjct: 131 ARVLKLYPFEMS---GGMLQ--------------RMMIALALLCEAPFIIADEPTTDLDV 173
Query: 480 EAERAVQEALDLLMLGRSTIIIARRLSLI----------RNADYIAVMDEGRLFEMGTHD 529
A+ + LDLL +I+ R L ++ R AD +AVM GR+ E G +
Sbjct: 174 VAQARI---LDLLE----SIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVE 226
Query: 530 ELLAT 534
L
Sbjct: 227 TLFNA 231
|
Length = 254 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 3e-05
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE N+ +Y + +L LT+ + LVGRNG+GKS+++ L+ +P G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 369 LLD 371
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 57/227 (25%), Positives = 95/227 (41%), Gaps = 27/227 (11%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTII-SLIERFYDPVA-------GQVLLDGRDL-K 1121
+L + SL++ G+ A++G +G+GKST++ +L A G V L+G L
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 1122 LYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARH---NASEAEVKEAARIANAHHFISSL 1178
+ R R L Q F+ + RE ++ R+ + A IA ++
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-- 133
Query: 1179 PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP---------ILLLDEASSSIE-SESS 1228
G VG L+ G+ R+ ARV+ + P LLLDE +++++ +
Sbjct: 134 --GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191
Query: 1229 RVVQEALDTLIMGNKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEGT 1274
R++ N + I H + RH D I +L G IV G
Sbjct: 192 RLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 33/204 (16%)
Query: 1072 LSNFSLKVNGGQ-----TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL-YNL 1125
+F L+V G+ + ++G +G GK+T + L+ P G DLK+ Y
Sbjct: 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE----DLKVSYKP 407
Query: 1126 RWLR-NHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDT 1184
+++ ++ G V+ + + IR + +S + + + +L +
Sbjct: 408 QYISPDYDGTVED---LLRSAIR-----SAFGSSYFKTEIVKPL--------NLEDLLER 451
Query: 1185 HVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGN-K 1243
V +L+ G+ QR+AIA + + A + LLDE S+ ++ E +V + + I N K
Sbjct: 452 PVD----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEK 507
Query: 1244 TTILIAHRAAMMRHV-DNIVVLNG 1266
T +++ H M+ +V D ++V G
Sbjct: 508 TALVVDHDIYMIDYVSDRLIVFEG 531
|
Length = 591 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 5e-05
Identities = 69/317 (21%), Positives = 128/317 (40%), Gaps = 61/317 (19%)
Query: 298 DGNTLPSVHG-NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356
D + +V NI F + +I + ++ + +A+VG +GSGKS
Sbjct: 8 DARDVLAVENLNIAFMQ------EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALA 61
Query: 357 MERFYDPTLGEV-----LLDGENIKNLKL-EWLRSQ--------IGLVTQEPALLSL--- 399
+ R + G V LL + + ++L E +Q + ++ QEP + SL
Sbjct: 62 LMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEP-MTSLNPV 120
Query: 400 ---------SIRDNIAYGRDATLDQIE---EAAKIAHAHTFISSLEKGYETQVGRAGLAL 447
SIR + R+ + + + + +I A T +S Y Q L
Sbjct: 121 FTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR----YPHQ-------L 169
Query: 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRL 505
+ + ++ IA A+ P++L+ DE T LD + + + + +L + I I +
Sbjct: 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM 229
Query: 506 SLIRN-ADYIAVMDEGRLFEMGTHDELLA------TGDLYAEL--LKCEEAAKLPRRMPV 556
++ AD + VM +G E G+ +++ T L A + L + PRR P+
Sbjct: 230 GVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPL 289
Query: 557 --RNYKETSTFQIEKDS 571
+ IE+D+
Sbjct: 290 ISLEHPAKQEPPIEQDT 306
|
Length = 623 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-05
Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 29/212 (13%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF--------YDPTLGEVLLDGENIK-- 376
L L V A + V+L G NG+GKS+ LM+ Y+ GE++ +GE ++
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKST---LMKVLSGVYPHGTYE---GEIIFEGEELQAS 74
Query: 377 NLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLD-QIEEAAKIAHAHTFIS--SL 432
N++ + R+ I ++ QE AL+ LS+ +NI G + T ++ A A ++ L
Sbjct: 75 NIR-DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL 133
Query: 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL--D 490
+ T VG GL ++Q ++ IA+A+ +L+LDE T L E+E AV + D
Sbjct: 134 DINPATPVGNLGLG--QQQLVE--IAKALNKQARLLILDEPTASLT-ESETAVLLDIIRD 188
Query: 491 LLMLGRSTIIIARRLSLIRN-ADYIAVMDEGR 521
L G + I I+ +L+ ++ +D I V+ +GR
Sbjct: 189 LKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 7e-05
Identities = 53/228 (23%), Positives = 104/228 (45%), Gaps = 20/228 (8%)
Query: 1033 RVPKIDPDDSSA------VKPPNVYGSIELKNVDFCYP--SRPEVLVLSNFSLKVNGGQT 1084
+ P D DD A + N + L + Y S P V + V G+
Sbjct: 1911 KEPIFDEDDDVAEERQRIISGGNKTDILRLNELTKVYSGTSSPAV---DRLCVGVRPGEC 1967
Query: 1085 VAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQ-EPIIFS 1143
++GV+G+GK+T ++ +G + G+ + L N+ + ++G Q + I
Sbjct: 1968 FGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSI-LTNISDVHQNMGYCPQFDAIDDL 2026
Query: 1144 TTIRENI-IYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202
T RE++ +YAR AE E ++AN I SL G + + G K++++
Sbjct: 2027 LTGREHLYLYARLRGVPAE--EIEKVANWS--IQSL--GLSLYADRLAGTYSGGNKRKLS 2080
Query: 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250
A ++ P++LLDE ++ ++ ++ R++ + ++I + +L +H
Sbjct: 2081 TAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
L+ + + L+G NG+GK++++ + P G V + G + IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 392 QEPAL---LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA-- 446
Q +S+ + GR + + A +L +VG LA
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAV-RDALR-----RVGLTELADR 109
Query: 447 ----LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
L+ Q+ ++ +ARA+ PS+LLLDE GLD + + E L + I++
Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 15/169 (8%)
Query: 366 GEVLLDGE--NIKNLKLEWLRSQIGLVTQEPA----LLSLSIRDNI---AYGRDATLDQI 416
G V ++G+ +I+N + +R+ I +V ++ + L + NI +I
Sbjct: 316 GNVFINGKPVDIRN-PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRI 374
Query: 417 EEAAKIAHAHTFISSLE-KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475
+ AA++ + I L+ K + L+ +QK L A+ +L NP +L+LDE T
Sbjct: 375 DAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL--AKMLLTNPRVLILDEPTR 432
Query: 476 GLDFEAERAVQEALDLLML-GRSTIIIARRLSLIRN-ADYIAVMDEGRL 522
G+D A+ + + ++ L G + I+++ L+ + +D + V+ EG+L
Sbjct: 433 GVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 15/227 (6%)
Query: 1055 ELKNVDFCYPSRPEVLV-LSNFSLKVNGGQTVAVVGVSGSGKSTIIS-LIERFYDPV--A 1110
+N+ + + E V L+N V G A++G SG+GK+T+++ L ER V
Sbjct: 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG 820
Query: 1111 GQVLLDGRDLKLYNLRWLRNHLGLVQQEPI-IFSTTIRENIIYARHNASEAEV--KEAAR 1167
G L++GR L R +G VQQ+ + + ++T+RE++ ++ + V E
Sbjct: 821 GDRLVNGRPLDSSFQR----SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME 876
Query: 1168 IANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA-RVVLKNAPILLLDEASSSIESE 1226
+ + D VG+ G L Q++R+ I +V K +L LDE +S ++S+
Sbjct: 877 YVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ 936
Query: 1227 SSRVVQEALDTLIMGNKTTILIAHR--AAMMRHVDNIVVLN-GGRIV 1270
++ + + + L + + H+ A + D +++L GG+ V
Sbjct: 937 TAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 48/177 (27%)
Query: 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI---KNLKLEWLRSQIGLVT 391
P +K V LVG+NG GKS+++ L++ E+ DG + N +L W V
Sbjct: 26 PGQK-VGLVGKNGCGKSTLLALLK-------NEISADGGSYTFPGNWQLAW-------VN 70
Query: 392 QEPALLSLSIRDNIAYGRDATLDQIEEAAK----------IAHAHTFISSLEKGYETQVG 441
QE L + + G D Q+E IA H + +++ T
Sbjct: 71 QETPALPQPALEYVIDG-DREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAW--TIRS 127
Query: 442 RA-----GLALTEEQ------------KIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
RA GL + EQ +++L++A+A++ +LLLDE T LD +A
Sbjct: 128 RAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA 184
|
Length = 638 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 18/220 (8%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131
L + S V GG A+VGV+GSGKST+ + F +G++ + G+ + + L+ +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78
Query: 1132 L-GLVQQEPII---FSTTIRENIIYARHN----ASEAEVKEAARIANAHHFISSLPHGYD 1183
L V Q + F + + ++ R+ A+ ++ + A + + +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH- 137
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK 1243
+G +L+ GQK+R+ +AR + + ++LLDE + ++ ++ + L L K
Sbjct: 138 RQIG----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK 193
Query: 1244 TTILIAHR-AAMMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282
T ++ H ++ D V++ G + T + A+N
Sbjct: 194 TMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAEN 233
|
Length = 272 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 43/183 (23%), Positives = 60/183 (32%), Gaps = 52/183 (28%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
+T + G NGSGKS+I+ IGL
Sbjct: 16 VTFGEGSLTIITGPNGSGKSTIL------------------------------DAIGLA- 44
Query: 392 QEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451
L + R AA A L G + + LAL
Sbjct: 45 -------LGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKE---LSALAL---- 90
Query: 452 KIKLSIARAVLLNPSIL-LLDEVTGGLDFEAERAVQEAL-DLLMLGRSTIIIARRLSLIR 509
L++A L P L +LDE+ GLD +A+ EA+ + L+ G I+I L
Sbjct: 91 --ILALA---SLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE 145
Query: 510 NAD 512
AD
Sbjct: 146 LAD 148
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 40/153 (26%)
Query: 340 VALVGRNGSGKSSIIP-LMERFYDPTL-GEVLLDGENIKNLKLEWLRSQIGLVTQEPALL 397
AL+G +G+GK++++ L R + GE+L++G + + + G V Q+
Sbjct: 36 TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDVHS 91
Query: 398 -SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456
+L++R+ + + S+L +G L+ EQ+ +L+
Sbjct: 92 PNLTVREALRF----------------------SALLRG-----------LSVEQRKRLT 118
Query: 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
I + PSIL LDE T GLD +A + L
Sbjct: 119 IGVELAAKPSILFLDEPTSGLDSQAAYNIVRFL 151
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 46/231 (19%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE----- 381
L V A + + LVG NG+GKS+++ M P G + G+ ++
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARH 70
Query: 382 --WLRSQIGLVTQEPAL--LSLSIRDNIA-YGRDATLDQIEEAAKIAHA-HTFISSLEKG 435
+L Q P L+L D + L+++ EA + ++ L G
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGG 130
Query: 436 YETQVGRAGLALTEEQKIKLSIARAVLL------NPS--ILLLDEVTGGLDFEAERAVQE 487
E Q+++L+ AV+L NP+ +LLLDE LD A Q
Sbjct: 131 -------------EWQRVRLA---AVVLQVWPDINPAGQLLLLDEPMNSLDV----AQQA 170
Query: 488 ALDLLM-----LGRSTIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELL 532
ALD L+ G + ++ + L+ +R+AD + ++ +G+L G DE+L
Sbjct: 171 ALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 34/236 (14%)
Query: 332 LTVPAKKAVALVGRNGSGKSSI-------IPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
LT+ A + A VG NGSGKS++ +PL+ GE +I L E L+
Sbjct: 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLS-------GERQSQFSHITRLSFEQLQ 76
Query: 385 SQIGLVTQE-----PALLSLSIRDNIAYGRDATLDQIEEAAKIAH-AHTF-ISSLEKGYE 437
LV+ E +LS D + D++++ A+ A F I++L
Sbjct: 77 K---LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITAL----- 128
Query: 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRS 497
+ R L+ + K + +A++ P +L+LDE GLD + + + E L L
Sbjct: 129 --LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGI 186
Query: 498 TII-IARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLP 551
T++ + R I + + V+ + L E G +E+L L A+L E+ +
Sbjct: 187 TLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA-LVAQLAHSEQLEGVQ 241
|
Length = 490 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 29/174 (16%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ L+NV + R VLS+ SL++ G+ + ++G +G+GKST++ ++ P G +
Sbjct: 5 VSLENVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIR---ENIIYARHNASEAEVKEAARIAN 1170
+G+ LR +G V Q+ + TT+ + R + ++ A +
Sbjct: 62 KRNGK------LR-----IGYVPQK-LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ 109
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224
A H I + P M+ L+ G+ QR+ +AR +L +L+LDE + ++
Sbjct: 110 AGHLIDA-P--------MQ--KLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 1075 FSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGL 1134
S V G+ V + G+ G+G+S ++ L+ AGQV LDG+ + + + R G+
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRA-GI 330
Query: 1135 V------QQEPIIFSTTIRENI-IYARHNASEAE--VKEAARIANAHHFISSL----PHG 1181
+ + E II ++ +NI I AR + A + NA FI SL P
Sbjct: 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390
Query: 1182 YDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241
+ + +L+ G +Q+ + R + ++ ++LLDE + I+ + + + L
Sbjct: 391 -EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445
Query: 1242 NKTTILIAHR-AAMMRHVDNIVVLNGGRIVEEGTHD 1276
+ ++ ++ D IVV+ GRI E +
Sbjct: 446 GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELARE 481
|
Length = 501 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 36/165 (21%)
Query: 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK-----NLKLEWLRSQIG 388
VP + + L+GRNG+GKS++I L+ P GE+ L + IK +LE+LR+
Sbjct: 336 VPGSR-IGLLGRNGAGKSTLIKLLAGELAPVSGEIGL-AKGIKLGYFAQHQLEFLRADES 393
Query: 389 ----LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
L P L +RD + G D++ E ET+ G
Sbjct: 394 PLQHLARLAPQELEQKLRDYLG-GFGFQGDKVTE------------------ETRRFSGG 434
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
+K +L +A V P++LLLDE T LD + +A+ EAL
Sbjct: 435 ------EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL 473
|
Length = 638 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-04
Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 43/209 (20%)
Query: 1072 LSNFSLKVNGGQ-----TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL-YNL 1125
L +FSL+V GG+ + +VG +G GK+T L+ P G+V + LK+ Y
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKP 406
Query: 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFIS------SLP 1179
++++ + T+ + + + + ++ S L
Sbjct: 407 QYIK----------PDYDGTVEDLL------------RSITDDLGSSYYKSEIIKPLQLE 444
Query: 1180 HGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI 1239
D +V DL+ G+ QR+AIA + ++A + LLDE S+ ++ E V +A+ +
Sbjct: 445 RLLDKNVK----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500
Query: 1240 MGN-KTTILIAHRAAMMRHV-DNIVVLNG 1266
T +++ H M+ ++ D ++V G
Sbjct: 501 EEREATALVVDHDIYMIDYISDRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 65/211 (30%)
Query: 322 PEIPILSGFYLT-VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380
P+ IL L+ P K + ++G NG+GKS+++ +M GE IK
Sbjct: 16 PKKEILKDISLSFFPGAK-IGVLGLNGAGKSTLLRIMAGVDKEFNGEARP-APGIK---- 69
Query: 381 EWLRSQIGLVTQEPAL-LSLSIRDNIAYG--------------------RDATLDQ-IEE 418
+G + QEP L + ++R+N+ G DA +D + E
Sbjct: 70 ------VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAE 123
Query: 419 AAKI------AHAHTFISSLEKGYETQVGRAGLAL---TEEQKI-KLS--------IARA 460
A++ A A LE A AL + + KLS + R
Sbjct: 124 QAELQEIIDAADAWDLDRKLE--------IAMDALRCPPWDADVTKLSGGERRRVALCRL 175
Query: 461 VLLNPSILLLDEVTGGLDFEA----ERAVQE 487
+L P +LLLDE T LD E+ E+ +QE
Sbjct: 176 LLSKPDMLLLDEPTNHLDAESVAWLEQHLQE 206
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 37/175 (21%), Positives = 62/175 (35%), Gaps = 53/175 (30%)
Query: 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL-LDGENIKNLKLEWLRSQIGLVTQEPA 395
+ + +VG GSGK+++ + R P G V+ +DGE+I L+ L
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL----------- 50
Query: 396 LLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455
VG + + E +++L
Sbjct: 51 -----------------------------------------LIIVGGKKASGSGELRLRL 69
Query: 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN 510
++A A L P +L+LDE+T LD E E + +L +L + L N
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 41/241 (17%)
Query: 1069 VLVLSNFSLKVNGGQTVAVVGVSGSGKS----TIISLIERFYDPVAGQVLLDGRDLKLYN 1124
V + S+ +N G+ +VG SGSGKS I + + + A ++ D DL +
Sbjct: 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79
Query: 1125 LRWLRNHLG----LVQQEPIIF---STTIRENII---------------YARHNASEAEV 1162
R R +G ++ QEP S + +I + E+
Sbjct: 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIEL 139
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLL-DEASS 1221
I + + S P+ +LT G+ Q++ IA + L N P LL+ DE ++
Sbjct: 140 LHRVGIKDHKDIMRSYPY-----------ELTEGECQKVMIA-IALANQPRLLIADEPTN 187
Query: 1222 SIESESSRVVQEALDTLIMGNKTTI-LIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLL 1279
S+E + + L L + TTI LI+H M+ D I VL G+ VE + L+
Sbjct: 188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247
Query: 1280 A 1280
Sbjct: 248 T 248
|
Length = 330 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 51/231 (22%)
Query: 1074 NFSLKVNGGQTVAVVGVSGSGKS-TIISLIERFYDP--VAGQVLLDGRDLKLYNLRWLRN 1130
NFSL G+T+ +VG SGSGKS T +L+ + G +GR+ + NL
Sbjct: 36 NFSL--RAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE--ILNLP--EK 89
Query: 1131 HLGLVQQEPI--IFS---------TTIRENII--------YARHNASEAEVK--EAARIA 1169
L ++ E I IF + E ++ ++ A E V+ +A ++
Sbjct: 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP 149
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
A + PH + GMR QR+ IA +L +L+ DE +++++
Sbjct: 150 EARKRMKMYPHEFSG--GMR---------QRVMIAMALLCRPKLLIADEPTTALDV---- 194
Query: 1230 VVQEALDTLIMG-----NKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
VQ + TL+ N I+I H ++ + D ++V+ GR +E G
Sbjct: 195 TVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-04
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114
VL+ L + GQ VAVVG SG GKST++ L+ P AG++L
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70
|
Length = 257 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 61/229 (26%), Positives = 94/229 (41%), Gaps = 33/229 (14%)
Query: 326 ILSGFYLTVPAKKAVALVGRNGSGKSSII-PLMERFYDPTL-------GEVLLDGE---N 374
IL L + + AL+GRNG+GKS+++ L G+V L+GE
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 375 IKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISS--L 432
I +L LR+ + Q PA + S R+ + GR A + H I+ L
Sbjct: 76 IDAPRLARLRAVLPQAAQ-PA-FAFSAREIVLLGR---YPHARRAGALTHRDGEIAWQAL 130
Query: 433 EK-GYETQVGRAGLALTEEQKIKLSIARAV---------LLNPSILLLDEVTGGLDFEAE 482
G VGR L+ + ++ AR + P LLLDE T LD +
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 483 RAVQEALDLLM----LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527
+ + + L LG I+ L+ R+AD IA++ +G + G
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLA-ARHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 55/229 (24%)
Query: 311 FRNVYF-SYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS----IIPLMERFYDPTL 365
+RN+ F + R +IPIL F V + V ++GR GSG S+ + E
Sbjct: 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE- 64
Query: 366 GEVLLDGENIKNLKLEWLRSQIGLVTQE---PALLSLSIRDNIAYGRDATLDQIEEAAKI 422
G++ +G K E +I V++E L T+ + + A
Sbjct: 65 GDIHYNGIPYKEFA-EKYPGEIIYVSEEDVHFPTL--------------TVRETLDFALR 109
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
+ F+ + G ++ ++SIA A++ S+L D T GLD
Sbjct: 110 CKGNEFVRGISGG---------------ERKRVSIAEALVSRASVLCWDNSTRGLD---- 150
Query: 483 RAVQEALDLLM--------LGRSTIIIARRLSLIRNA--DYIAVMDEGR 521
AL++L L +T + + S D + V+ EGR
Sbjct: 151 --SSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGR 197
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 6e-04
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM 1255
G+K R+A+A+++L+N +LLLDE ++ ++ ES ++EAL T IL++H +
Sbjct: 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFL 130
Query: 1256 RHV-DNIVVLNGGR 1268
V I+ L G+
Sbjct: 131 DQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-04
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Query: 443 AGLALTEEQKIKLSIARAVLL---NPSILLLDEVTGGLDFEAERAVQEALD-LLMLGRST 498
+ L+L+E KI + IA+ + L +P++ LLDE+ LD + + A+ L L+ LG S
Sbjct: 1698 SSLSLSE--KIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSV 1755
Query: 499 IIIARRLSLIRNADYIAVMDEG 520
I I +L++ ADY+ M G
Sbjct: 1756 IYIDHDPALLKQADYLIEMGPG 1777
|
Length = 1809 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 58/200 (29%)
Query: 1067 PEVLVLSNFSLKVNGGQTVAVVGVSGSGKST---IISLIERFYDPVAGQVLLDGRDLKLY 1123
P+ +L + SL G + V+G++G+GKST I++ +++ ++ A G +
Sbjct: 16 PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA--RPAPGIKV--- 70
Query: 1124 NLRWLRNHLGLVQQEPIIFST-TIRENI----------------IYARHNASEAE----V 1162
G + QEP + T T+REN+ I A+ +A+ +
Sbjct: 71 ---------GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALL 121
Query: 1163 KEAARI------ANAHHFISSL---------PHGYDTHVGMRGVDLTPGQKQRIAIARVV 1207
E A + A+A L P D V L+ G+++R+A+ R++
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVT----KLSGGERRRVALCRLL 176
Query: 1208 LKNAPILLLDEASSSIESES 1227
L +LLLDE ++ +++ES
Sbjct: 177 LSKPDMLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD-LLMLGRSTIIIAR 503
L+ E Q++KL+ ++ +LDE + GL + + E + L+ LG + I+I
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 504 RLSLIRNADYI 514
L ++ +AD+I
Sbjct: 148 NLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 42/207 (20%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENI-KNLKLEWLRSQIGLV 390
TVP ALVG NGSGKS++ + F G++ + G+ + L+ ++ + V
Sbjct: 28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQ----KNLVAYV 83
Query: 391 TQEPAL---LSLSIRDNIAYGRDATLDQIEEAAK-----IAHAHTFISSLEKGYETQVGR 442
Q + + + D + GR + + A K + A + +E + Q+G
Sbjct: 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-QIGE 142
Query: 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA 502
L+ QK ++ +ARA+ ++LLDE G+D + E A
Sbjct: 143 ----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE-------------------A 179
Query: 503 RRLSLIRNADYIAVMDEGRLFEMGTHD 529
R +SL+R + DEG+ + TH+
Sbjct: 180 RIISLLRE-----LRDEGKTMLVSTHN 201
|
Length = 272 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 1029 EIIDRVPKIDPDDSSAVK--PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVA 1086
E ++ V +PD+ SA P N I L N Y RP +L N S +VN G+
Sbjct: 235 EQLEGVQLPEPDEPSARHALPANE-PRIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQ 290
Query: 1087 VVGVSGSGKSTIISLI 1102
+VG +G+GKST++SLI
Sbjct: 291 IVGPNGAGKSTLLSLI 306
|
Length = 490 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 74/278 (26%), Positives = 111/278 (39%), Gaps = 83/278 (29%)
Query: 318 YLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLD-GENIK 376
+LS + P+L L + + V LVGRNG+GKS+++ ++ GEVLLD G I
Sbjct: 10 WLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN-------GEVLLDDGRIIY 62
Query: 377 NLKLEWLRSQIGLVTQEPAL-LSLSIRDNIAYG----------------------RDATL 413
L R Q Q+P + ++ D +A G + L
Sbjct: 63 EQDLIVARLQ-----QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNL 117
Query: 414 DQIEEA-AKIAH--------------------AHTFISSLEKGYETQVGRAGLALTEEQK 452
+++ + ++ H +SSL G+ + +A L
Sbjct: 118 NELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGW---LRKAALG------ 168
Query: 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD--LLMLGRSTIIIARRLSLIRN 510
RA++ NP +LLLDE T LD E E L+ L S I I+ S IRN
Sbjct: 169 ------RALVSNPDVLLLDEPTNHLDIET----IEWLEGFLKTFQGSIIFISHDRSFIRN 218
Query: 511 -ADYIAVMDEGRLFEM-GTHDELLATGDLYAELLKCEE 546
A I +D G+L G +D+ L E L+ EE
Sbjct: 219 MATRIVDLDRGKLVSYPGNYDQYLLEK---EEALRVEE 253
|
Length = 635 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 805 ERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIV 864
+++R + A LR + FD + L R+ ND +R + ++ ++ SAA+I
Sbjct: 98 QQLRTDVMDAALRQPLSAFDTQ--PVGQLISRVTNDTEVIRDLYVTVVATVLR-SAALIG 154
Query: 865 AVIIGM-LLEWRLALVALATLP-ILSLSAIAQKL 896
A+++ M L+WR+ALVA+ P +L + I Q+
Sbjct: 155 AMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY 188
|
Length = 592 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 16/155 (10%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
P+L +PA + L G NG+GK++++ L+ +P GE+L + ++IK + +
Sbjct: 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY-Q 73
Query: 385 SQIGLVTQEPAL-LSLSIRDNIAY-----GRDATLDQIEEAAKIAHAHTFISS-LEKGYE 437
Q+ V + L++R+N Y + ++ + H + L G +
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQK 133
Query: 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472
QV ++ +S A+ LL+ ++ LDE
Sbjct: 134 RQVALL--------RLWMSKAKLWLLDEPLVALDE 160
|
Length = 200 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 56/229 (24%), Positives = 91/229 (39%), Gaps = 46/229 (20%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RS 385
L V A + + LVG NG+GKS+++ M G + G+ ++ L R
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 386 QIGLVTQEPAL--------LSLSIRDNIAYGRDATLDQIEEAAKIAHA-HTFISSLEKGY 436
+ L Q+ L+L D R L+ + A + + L G
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDK---TRTELLNDVAGALALDDKLGRSTNQLSGG- 129
Query: 437 ETQVGRAGLALTEEQKIKLSIARAVL-----LNPS--ILLLDEVTGGLDFEAERAVQEAL 489
E Q+++L A VL NP+ +LLLDE LD A Q AL
Sbjct: 130 ------------EWQRVRL--AAVVLQITPDANPAGQLLLLDEPMNSLDV----AQQSAL 171
Query: 490 DLLML-----GRSTIIIARRLS-LIRNADYIAVMDEGRLFEMGTHDELL 532
D L+ G + ++ + L+ +R+A ++ G+L G +E+L
Sbjct: 172 DRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 66/244 (27%), Positives = 111/244 (45%), Gaps = 44/244 (18%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI---IPLMERFYDPT 364
++ + V SY + ++ G L V + + LVG +G GKS++ + +ER T
Sbjct: 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---T 57
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG-RDATLDQIEEAAKI 422
GE+ + G + L E I +V Q AL +S+R+N+AYG + + + E ++
Sbjct: 58 SGEIWIGGRVVNEL--EPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERV 115
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
A A I LE + R L+ Q+ ++++ RA++ P++ L DE LD A+
Sbjct: 116 AEAAR-ILELEPLLD----RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD--AK 168
Query: 483 RAVQEALDLLMLGRSTIIIARRLS---------------LIRNADYIAVMDEGRLFEMGT 527
VQ L++ L RRL L AD + VM+ G ++GT
Sbjct: 169 LRVQMRLEIQRL-------HRRLKTTSLYVTHDQVEAMTL---ADRVVVMNGGVAEQIGT 218
Query: 528 HDEL 531
E+
Sbjct: 219 PVEV 222
|
Length = 356 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 45/184 (24%), Positives = 89/184 (48%), Gaps = 22/184 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ NV S+ R +LS L + K + L+G NG+GKS+++ ++ P G +
Sbjct: 5 VSLENVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTF 428
+G+ L++ ++ ++ L T P ++ +R ++ L ++ ++ H
Sbjct: 62 KRNGK----LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALK---RVQAGHLI 114
Query: 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488
+ ++K L+ E Q++ L ARA+L P +L+LDE T G+D + A+ +
Sbjct: 115 DAPMQK----------LSGGETQRVLL--ARALLNRPQLLVLDEPTQGVDVNGQVALYDL 162
Query: 489 LDLL 492
+D L
Sbjct: 163 IDQL 166
|
Length = 251 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.002
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 440 VGRAGL-ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE----RAVQEALD 490
VG G+ L+ EQ+ +L+IA ++ NPSI+ +DE T GLD A R V+ +D
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1067
|
Length = 1470 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 61/270 (22%), Positives = 111/270 (41%), Gaps = 52/270 (19%)
Query: 288 ISRSSSTTNYDGNTLPSV-----HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVAL 342
+ + +N T+ V + R++ FS + R EI GF
Sbjct: 251 NAMKENVSNLAHETVFEVRNVTSRDRKKVRDISFS-VCRGEI---LGF------------ 294
Query: 343 VGRNGSGKSSIIPLMERFY--DPTL-GEVLLDGENIK-NLKLEWLRSQIGLVTQ---EPA 395
G GSG++ LM + D GE+ L+G++I L+ ++ + +T+ +
Sbjct: 295 AGLVGSGRTE---LMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNG 351
Query: 396 LLS-LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL---TEEQ 451
SI N+A R + A + H E+ + R LAL + Q
Sbjct: 352 FFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRT-AENQRELLALKCHSVNQ 405
Query: 452 KI---------KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLLMLGRSTIII 501
I K+ I++ + P +++ DE T G+D A+ + + + L G+ +++
Sbjct: 406 NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMV 465
Query: 502 ARRL-SLIRNADYIAVMDEGRLFEMGTHDE 530
+ L +I D IAV EGRL ++ T+ +
Sbjct: 466 SSELPEIITVCDRIAVFCEGRLTQILTNRD 495
|
Length = 510 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE N+ + + I LS +P V ++G NG+GKS++ ++ P G +
Sbjct: 323 IEAENLSKGFGDKLLIDDLS---FKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALL--SLSIRDNIAYGRDATLDQIEEAAKIAHAH 426
+ GE +K + V Q L + ++ + I+ G LD I+ + +
Sbjct: 380 KI-GETVK----------LAYVDQSRDALDPNKTVWEEISGG----LDIIQLGKREVPSR 424
Query: 427 TFISSLE-KGYETQ--VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
++ KG + Q VG L+ ++ ++ +A+ + ++LLLDE T LD E R
Sbjct: 425 AYVGRFNFKGSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLR 480
Query: 484 AVQEALD 490
A++EAL
Sbjct: 481 ALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 60/251 (23%), Positives = 101/251 (40%), Gaps = 62/251 (24%)
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERF--YDPTLGEVL----------------LDGE 373
T+ + + ++GR+G+GKS ++ ++ Y+PT G ++ GE
Sbjct: 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80
Query: 374 NIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA---------YGRDATLDQIEEAAKIAH 424
++ L IR IA YG D LD + EA +
Sbjct: 81 PCPVCGGTLEPEEVDFWNLSDKLRR-RIRKRIAIMLQRTFALYGDDTVLDNVLEALE--- 136
Query: 425 AHTFISSLEKGYETQ--VGRAGLALTEE-----------------QKIKLSIARAVLLNP 465
E GYE + VGRA + L E +K ++ +AR + P
Sbjct: 137 --------EIGYEGKEAVGRA-VDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEP 187
Query: 466 SILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRL 522
+ L DE TG LD + + V AL+ + G S ++ + +I + +D ++ G +
Sbjct: 188 FLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI 247
Query: 523 FEMGTHDELLA 533
E GT DE++A
Sbjct: 248 KEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1303 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-211 Score=1929.10 Aligned_cols=1156 Identities=51% Similarity=0.850 Sum_probs=1060.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHH
Q 000751 28 WLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSE 107 (1303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~ 107 (1303)
-+..+++++++++++.++..|++..+|.+.++|+..++|.++++.+++++++|||.+ .+|++.+++++|++.+++++++
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~ge 147 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGE 147 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999996 7799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 000751 108 KVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFT 187 (1303)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 187 (1303)
++..+++.+.+++.++++.|+..|+|+++++...|++++...++.+.+.+...+.+++++++.++++|++.++|||.+|+
T Consensus 148 Kvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~ 227 (1228)
T KOG0055|consen 148 KVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFN 227 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHH
Q 000751 188 NETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQA 267 (1303)
Q Consensus 188 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~ 267 (1303)
.|+.+.++|.+.++...+...+...+.++..++..++.++++++.+|+|+.++.++..++|+++++++.++.....+.+.
T Consensus 228 gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa 307 (1228)
T KOG0055|consen 228 GEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQA 307 (1228)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCC--CCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECC
Q 000751 268 ATNFYSFDQGRIAAYRLYEMISRSSSTTNYD--GNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGR 345 (1303)
Q Consensus 268 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~ 345 (1303)
.+.+..+..+++|+.+|++.++..++..... +......+++|+|+||+|+||++++.++|+|+||+|++|+++|||||
T Consensus 308 ~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~ 387 (1228)
T KOG0055|consen 308 SPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGP 387 (1228)
T ss_pred ccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECC
Confidence 9999999999999999999999876543321 22233467899999999999999989999999999999999999999
Q ss_pred CCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhc
Q 000751 346 NGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAH 424 (1303)
Q Consensus 346 sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~ 424 (1303)
|||||||+++||.|||+|++|+|++||.|+++++.+|+|++||+|+|+|.||++||+|||+||+ +++++++.+|++.++
T Consensus 388 SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~an 467 (1228)
T KOG0055|consen 388 SGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAAN 467 (1228)
T ss_pred CCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred chHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC
Q 000751 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504 (1303)
Q Consensus 425 ~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~ 504 (1303)
+++||..||+||||.+||+|..|||||||||||||||++||+||||||||||||+++|+.++++|++..+|||+|+||||
T Consensus 468 a~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHR 547 (1228)
T KOG0055|consen 468 AHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHR 547 (1228)
T ss_pred HHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcc
Q 000751 505 LSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPK 584 (1303)
Q Consensus 505 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (1303)
|+++++||+|+||++|+|+|.|+|+||++.+|.|.++++.|+....++..+ +.++. ..... .+. ..+.
T Consensus 548 LStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~--~~~~~---~~~~~----~s~-~~s~-- 615 (1228)
T KOG0055|consen 548 LSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEE--EEESL---KEERS----RSL-KSSS-- 615 (1228)
T ss_pred hhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccc--cccch---hhhhh----hcc-cccc--
Confidence 999999999999999999999999999999999999999987654321100 00000 00000 000 0000
Q ss_pred cCCCCccccccccCCCCCCCCCCCCCCCCCCchhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCC
Q 000751 585 MLKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNG 664 (1303)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1303)
. .. +..
T Consensus 616 -------------------------------~----------------~~---------------------------~~~ 621 (1228)
T KOG0055|consen 616 -------------------------------S----------------SP---------------------------SLS 621 (1228)
T ss_pred -------------------------------c----------------cc---------------------------ccc
Confidence 0 00 000
Q ss_pred CCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000751 665 SDPESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFN 744 (1303)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1303)
+.. ..+.... .++.......+ . .......++++++++++++|+++++|.+++++.|+..
T Consensus 622 ~~~--~~~~~~~-------------~~~~~e~~~~~--~----~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~ 680 (1228)
T KOG0055|consen 622 RGS--NRSNLLS-------------VKPEGEDPEEP--V----SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATY 680 (1228)
T ss_pred CCc--ccccccc-------------ccccccccccc--c----ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhH
Confidence 000 0000000 00000000000 0 0111457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q 000751 745 PLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFD 824 (1303)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd 824 (1303)
|++++.++.++..++..+.+ ........|++++++++++..++.+++++++.+++++++.|+|.++|+++++++++|||
T Consensus 681 P~fa~~~s~~~~~f~~~~~~-~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD 759 (1228)
T KOG0055|consen 681 PLFAYVFSQVLEAFYPPDDD-ELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFD 759 (1228)
T ss_pred HHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC
Confidence 99999999999998865422 33334445999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 825 EEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRG 904 (1303)
Q Consensus 825 ~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~ 904 (1303)
+++|+ |.|.+|+.+|...++..+...+..+++++..++++++++|+++|+++++++++.|++++..+.+.+++..+.++
T Consensus 760 ~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~ 838 (1228)
T KOG0055|consen 760 DPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKD 838 (1228)
T ss_pred CCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 000751 905 IQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVR 984 (1303)
Q Consensus 905 ~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 984 (1303)
.++...+++....|+++|++||++|+.|+++.+.|.+.+++..+...+++.+.++.+++++++.++++++.+|+|++++.
T Consensus 839 ~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~ 918 (1228)
T KOG0055|consen 839 DKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLIS 918 (1228)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECC
Q 000751 985 DGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYP 1064 (1303)
Q Consensus 985 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~ 1064 (1303)
.|.+++.+.+.+++++.+....+.+...+.|++.++..++.+++++++++|+.+++.+.+...+...|+|+|+||+|+||
T Consensus 919 ~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YP 998 (1228)
T KOG0055|consen 919 NGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYP 998 (1228)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCC
Confidence 99999999999999999999999999999999999999999999999999887766544444566789999999999999
Q ss_pred CCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcc
Q 000751 1065 SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFST 1144 (1303)
Q Consensus 1065 ~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~g 1144 (1303)
++|+.+||+|+||+|++||++|+||||||||||++.+|.|||||.+|.|.|||+||+++++++||++|++|+|||.||++
T Consensus 999 sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~ 1078 (1228)
T KOG0055|consen 999 TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG 1078 (1228)
T ss_pred CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 000751 1145 TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE 1224 (1303)
Q Consensus 1145 TIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD 1224 (1303)
||||||.||...++++|+.+|++.|++|+||.+||+||||.|||+|.+||||||||||||||++|||+||||||||||||
T Consensus 1079 TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALD 1158 (1228)
T KOG0055|consen 1079 TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALD 1158 (1228)
T ss_pred cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhh
Confidence 99999999965689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHhhhhh
Q 000751 1225 SESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYG 1294 (1303)
Q Consensus 1225 ~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~~~~~ 1294 (1303)
.++|+.||++|++... +||+|+|||||+||++||.|+|+++|+|+|+|||+||++++|.|++|++.|..
T Consensus 1159 seSErvVQeALd~a~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1159 SESERVVQEALDRAME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQSS 1227 (1228)
T ss_pred hhhHHHHHHHHHHhhc-CCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhccC
Confidence 9999999999999876 69999999999999999999999999999999999999999999999998753
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-168 Score=1669.28 Aligned_cols=1171 Identities=27% Similarity=0.454 Sum_probs=966.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHH
Q 000751 31 ELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVG 110 (1303)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~ 110 (1303)
.+++++++++++.+++.|++.+++..+++++..++|.++|++++++|+.||+.. .+|++++++++|++.+++.+...+.
T Consensus 98 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~ 176 (1466)
T PTZ00265 98 DIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFI 176 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777888999999999999999999999999999999999999995 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhH
Q 000751 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET 190 (1303)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 190 (1303)
.++..+++++++++++|+++|+|++++++++|+++++..++.+++++..++.++..+++++.+.|.++|+++||+|+.|+
T Consensus 177 ~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 256 (1466)
T PTZ00265 177 TIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEK 256 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCH
Confidence 99999999999999999999999999999999999999999999988888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHHHH
Q 000751 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHN--------KAHGGEIVTALFAVILSGL 262 (1303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g--------~~~~g~l~~~~~~~~~~~~ 262 (1303)
.+.++|.+......+...+.....++..++..++.++++++++|+|++++.+| .+++|.+++++++.+....
T Consensus 257 ~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~ 336 (1466)
T PTZ00265 257 TILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMF 336 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888889999999999999986 5788999988877777677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC-CCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEE
Q 000751 263 GLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNY-DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVA 341 (1303)
Q Consensus 263 ~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ 341 (1303)
.+..+.+.+..++.+.+|++||+++++.+++..+. .+...+. .+.|+|+||+|+|+++++.++|+|+||+|++||++|
T Consensus 337 ~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~va 415 (1466)
T PTZ00265 337 MLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYA 415 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEE
Confidence 77778888899999999999999999876643221 1111122 247999999999985444579999999999999999
Q ss_pred EECCCCCcHHHHHHHHhccCCCCCcEEEE-CCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-----------
Q 000751 342 LVGRNGSGKSSIIPLMERFYDPTLGEVLL-DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR----------- 409 (1303)
Q Consensus 342 ivG~sGsGKSTl~~ll~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~----------- 409 (1303)
||||||||||||+++|+|+|+|++|+|.+ ||+|+++++..++|++||||+|+|.||++||+|||.+|.
T Consensus 416 IvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~ 495 (1466)
T PTZ00265 416 FVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSN 495 (1466)
T ss_pred EECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcc
Confidence 99999999999999999999999999999 579999999999999999999999999999999999973
Q ss_pred -----------------------------------------------CCCHHHHHHHHHHhcchHHHHhcccccCccccC
Q 000751 410 -----------------------------------------------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGR 442 (1303)
Q Consensus 410 -----------------------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~ 442 (1303)
++++++++++++.+++++|+.+||+||||.+|+
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~ 575 (1466)
T PTZ00265 496 YYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS 575 (1466)
T ss_pred ccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC
Confidence 246688999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccccCEEEEEeCc
Q 000751 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEG 520 (1303)
Q Consensus 443 ~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G 520 (1303)
+|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 576 ~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 576 NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999886 489999999999999999999999986
Q ss_pred -----------------------------------------------eEeeccChHHHhh-cChhHHHHHHHHHhccCCC
Q 000751 521 -----------------------------------------------RLFEMGTHDELLA-TGDLYAELLKCEEAAKLPR 552 (1303)
Q Consensus 521 -----------------------------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~ 552 (1303)
+|+|+|+|+||++ .+|.|+.+++.|.......
T Consensus 656 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~ 735 (1466)
T PTZ00265 656 ERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKS 735 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccc
Confidence 5999999999998 6899999998775332100
Q ss_pred CCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCCCCCCCCCCCCCCCchhhhhhcCCCCCccCC
Q 000751 553 RMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADK 632 (1303)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1303)
.. +..+ . ...... ...+. . .... ........... +.
T Consensus 736 ~~---~~~~-~--~~~~~~------~~~~~----~-------------~~~~---~~~~~~~~~~~------------~~ 771 (1466)
T PTZ00265 736 SN---NDND-K--DSDMKS------SAYKD----S-------------ERGY---DPDEMNGNSKH------------EN 771 (1466)
T ss_pred cc---cccc-c--cccccc------ccccc----c-------------cccc---ccccccccccc------------cc
Confidence 00 0000 0 000000 00000 0 0000 00000000000 00
Q ss_pred CccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCcchhhhhhhccC
Q 000751 633 EPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQK 712 (1303)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1303)
.. .. . .. ... .......+.... . ..+...+..+.+...
T Consensus 772 ~~---~~-~-----------------------~~-~~~----~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~ 809 (1466)
T PTZ00265 772 ES---AS-N-----------------------KK-SCK----MSDENASENNAG----G------KLPFLRNLFKRKPKA 809 (1466)
T ss_pred cc---cc-c-----------------------cc-ccc----cccccccchhcc----c------cchhhhhcccccccc
Confidence 00 00 0 00 000 000000000000 0 000000000000001
Q ss_pred cchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 713 APSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQ 792 (1303)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 792 (1303)
...++++++..++.+..++++++++++.+++.|+++++++.+++.++... ........|++++++++++.+++.+++
T Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~l~~~~~~i~~~~~~~l~ 886 (1466)
T PTZ00265 810 PNNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA---NLEANSNKYSLYILVIAIAMFISETLK 886 (1466)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11334444444455555777888888999999999999999998766421 122334568888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 793 HFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLL 872 (1303)
Q Consensus 793 ~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~ 872 (1303)
.++..+++.++..++|.++|++++++|++|||++++++|++++|+++|++.++..+...+..++..++.+++++++++++
T Consensus 887 ~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 887 NYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-------------HHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHH
Q 000751 873 EWRLALVALATLPILSLSAIAQKLWLAGFS--RG-------------IQKMHRKASLVLEDAVRNIYTVVAFCAGNKVME 937 (1303)
Q Consensus 873 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~ 937 (1303)
+|.++++++++++++........+...... +. .++.....+..+.|++.|+++||+|+.|+++.+
T Consensus 967 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~ 1046 (1466)
T PTZ00265 967 CPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCN 1046 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHH
Confidence 999988776555444332222111111000 00 122345567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000751 938 LYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYI 1017 (1303)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1017 (1303)
+|.+..+...+...+.....++++++.+++.+++.++++|+|+.++..|.+++++++.++.++.+....+.......+.+
T Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~ 1126 (1466)
T PTZ00265 1047 LIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDS 1126 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888899999999999999999999999999999999998887766655555566677788889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCC---CCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCC
Q 000751 1018 LKRRKSLISVFEIIDRVPKIDPDDSSAVK---PPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSG 1094 (1303)
Q Consensus 1018 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSG 1094 (1303)
.++..++++++++++.+++.+..+..... ++...|.|+|+||+|+||++++.+||+|+||+|+|||++||||+||||
T Consensus 1127 ~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsG 1206 (1466)
T PTZ00265 1127 ENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSG 1206 (1466)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCC
Confidence 99999999999999876543211111111 123457899999999999776567999999999999999999999999
Q ss_pred hHHHHHHHhccccC------------------------------------------------------CccEEEECCeeC
Q 000751 1095 KSTIISLIERFYDP------------------------------------------------------VAGQVLLDGRDL 1120 (1303)
Q Consensus 1095 KSTL~~lL~rl~~~------------------------------------------------------~~G~I~idG~di 1120 (1303)
||||+++|+|||+| ++|+|+|||+||
T Consensus 1207 KSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di 1286 (1466)
T PTZ00265 1207 KSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDI 1286 (1466)
T ss_pred HHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEH
Confidence 99999999999999 699999999999
Q ss_pred CCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1121 KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1121 ~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
+++++++||++|+||||||+||+|||||||.||.++++++++++||+.|++++||.+||+||||.|||+|.+||||||||
T Consensus 1287 ~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQR 1366 (1466)
T PTZ00265 1287 CDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQR 1366 (1466)
T ss_pred HhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCchhHhhcCEEEEEeC----CEE-EEecC
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI-MGNKTTILIAHRAAMMRHVDNIVVLNG----GRI-VEEGT 1274 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~~TvI~IaHrl~ti~~~D~Iivl~~----G~I-ve~Gt 1274 (1303)
|||||||+|+|+||||||||||||++||+.|+++|++.. .+++|+|+||||++++++||+|+||++ |++ +|+|+
T Consensus 1367 IaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred HHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecC
Confidence 999999999999999999999999999999999999874 236999999999999999999999999 995 49999
Q ss_pred hHHHhh-cCchhHHHHhhh
Q 000751 1275 HDSLLA-KNGLYVRLMQPH 1292 (1303)
Q Consensus 1275 ~~eLl~-~~g~y~~l~~~~ 1292 (1303)
|+||++ ++|.|++|++.|
T Consensus 1447 h~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1447 HEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHhcCCChHHHHHhhc
Confidence 999998 599999999865
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-162 Score=1536.74 Aligned_cols=1093 Identities=21% Similarity=0.289 Sum_probs=843.8
Q ss_pred HHHHHHHHHHHH----HHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000751 56 LTGERQTAVIRS----RYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCW 131 (1303)
Q Consensus 56 ~~~~~~~~~lr~----~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (1303)
+...++..++|. .+|+|.++++...-.. .++|+++|.+++|+++++++ ..+++.+|..+..+++.+++-|
T Consensus 264 ~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~-~t~G~ivNlms~D~~ri~~~-----~~~~h~~w~~Plqi~~~l~lLy 337 (1381)
T KOG0054|consen 264 FVSFRVGMRLRSALISAIYRKALRLSNSARGE-TTVGEIVNLMSVDAQRLSDA-----ACFLHLLWSAPLQIILALYLLY 337 (1381)
T ss_pred HHHHhhhhhHHHHHHHHHHHhhhcCchhhccC-CCcchhhhhhhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666 5677777777766545 47899999999999999986 4588899998888888888777
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 000751 132 QIALITLCTGPFIV----AAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYG 207 (1303)
Q Consensus 132 ~l~l~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 207 (1303)
.+.....+.+.+++ .+-.++.++.++..++..+..++..+.++|.++|||+||.|+||+.+.++..+..+++.+.-
T Consensus 338 ~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~l 417 (1381)
T KOG0054|consen 338 GLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLL 417 (1381)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 65433222222222 23345566666667777777888889999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 208 ILISLVQGLGLGFTYGLAICSCALQLWVGRFL-VTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYE 286 (1303)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~ 286 (1303)
.+...+.++...+......+..+ +.++.+. ...+.+++...++.+.++..+..|+..++..+..+.++.+|.+|+.+
T Consensus 418 rk~~~~~~~~~~~~~~~p~lv~~--~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~ 495 (1381)
T KOG0054|consen 418 RKSAYLSALNSFLNFFSPVLVSV--VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKE 495 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887766555555544333 3344454 55667888899999999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCC-CCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCC
Q 000751 287 MISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL 365 (1303)
Q Consensus 287 ~l~~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 365 (1303)
++..+........ .+..+.+..|+++|.+|+|++.+..+.|+||||+|++|+.+||||+.|||||+|+..|+|+++..+
T Consensus 496 fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~s 575 (1381)
T KOG0054|consen 496 FLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS 575 (1381)
T ss_pred HhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccccc
Confidence 9976532211111 112233446999999999976445569999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCC
Q 000751 366 GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445 (1303)
Q Consensus 366 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~ 445 (1303)
|++.++| .++||||+||+|+|||||||+||.++++++|++++++|+|..|++.||.|+.|.|||+|.
T Consensus 576 G~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi 642 (1381)
T KOG0054|consen 576 GSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGI 642 (1381)
T ss_pred ceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc
Confidence 9999998 499999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEee
Q 000751 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV-QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFE 524 (1303)
Q Consensus 446 ~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i-~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~ 524 (1303)
+|||||||||+||||+|+|+||++||||+||+|+|+.+++ .++++...++||+|+|||.+++++.||+|++|+||+|.+
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVE 722 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEec
Confidence 9999999999999999999999999999999999998876 578888889999999999999999999999999999999
Q ss_pred ccChHHHhhcChhHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCCCC
Q 000751 525 MGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAF 604 (1303)
Q Consensus 525 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1303)
.|+|+||++.++.|.++........... ....+ .
T Consensus 723 ~Gty~el~~~~~~~~~l~~~~~~~~~~~-------------~~~~~------~--------------------------- 756 (1381)
T KOG0054|consen 723 SGTYEELLKSGGDFAELAHEEESEQEEE-------------ASEKD------L--------------------------- 756 (1381)
T ss_pred ccCHHHHHhcchhHHHHhhccchhhccc-------------ccccc------c---------------------------
Confidence 9999999998888888733221110000 00000 0
Q ss_pred CCCCCCCCCCCchhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccc
Q 000751 605 DSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERS 684 (1303)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1303)
+..+.. ...+ . .. . . ....
T Consensus 757 ~~~~~~----~~~~-------------~-~~---~--------------------------~--------------~~~~ 775 (1381)
T KOG0054|consen 757 ESGESS----RESE-------------S-RS---L--------------------------E--------------SLSS 775 (1381)
T ss_pred cccccc----cchh-------------h-hh---h--------------------------h--------------hhcc
Confidence 000000 0000 0 00 0 0 0000
Q ss_pred ccccccCCCCCCCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 000751 685 HSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEER 764 (1303)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1303)
..+. .+..........+.++.+.+..+...|+.+++... .+....+.+++......+.....+|++.|.+.-......
T Consensus 776 ~~~~-~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~-g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~ 853 (1381)
T KOG0054|consen 776 EEEK-SKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAG-GFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT 853 (1381)
T ss_pred cccc-cccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 0000 00000000001112222333444555666655422 222222222333333333334444554444322111100
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHH
Q 000751 765 HHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFV 844 (1303)
Q Consensus 765 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i 844 (1303)
......|.++|.+++++..++.+++.+.+...+.++++++|++++++++|.||+|||. +|+|+|+|||++|++.+
T Consensus 854 ---~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~v 928 (1381)
T KOG0054|consen 854 ---TVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTV 928 (1381)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHH
Confidence 0245578999999999999999999999999999999999999999999999999995 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 000751 845 RAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKAS----LVLEDAV 920 (1303)
Q Consensus 845 ~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l 920 (1303)
|..++..+..++..++.+++.++++.+..|+. +++.+|+.+++++++++|. ..+|+++++++..+ .++.|++
T Consensus 929 D~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~f---li~~~pl~v~~~~~~~~Y~-~tsReLkRLesitRSPi~sh~~Etl 1004 (1381)
T KOG0054|consen 929 DVLLPFTLEFFLQSLLNVLGILVVISYVTPWF---LIAIIPLGVIYYFVQRYYL-ATSRELKRLESITRSPIYSHFSETL 1004 (1381)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHH---HHHHHHHHHHHHHHHHHHH-HHhHHHHHhhhcccchHHHhHHHHh
Confidence 99999999999999999999999888888754 4455666666666665555 47999999987665 5789999
Q ss_pred hhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHH
Q 000751 921 RNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVF 1000 (1303)
Q Consensus 921 ~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~ 1000 (1303)
.|+.|||||+.+++|.+++....+.+.+..+. ......|+++..-+......+.......+...+..+.|..-....+.
T Consensus 1005 ~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~-~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsya 1083 (1381)
T KOG0054|consen 1005 QGLSTIRAFGKEERFIQENDELIDENSRAFFL-SISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYA 1083 (1381)
T ss_pred cCcceeeeccccHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHH
Confidence 99999999999999999999998887765554 34444555544322222111111111112222213333222122222
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC---CCCCCCCcccEEEEeeEEECCCCCCcceeeeeeE
Q 000751 1001 SFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSS---AVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSL 1077 (1303)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl 1077 (1303)
......+...+.......+.+.+.+|+.++.+.+++ .+...+ .++.++..|+|+|+|++.+|.+.. ++|||||||
T Consensus 1084 l~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~l-p~VLk~is~ 1161 (1381)
T KOG0054|consen 1084 LQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPNL-PLVLKGISF 1161 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCC-cchhcCceE
Confidence 222333444455566667778899999999886554 222211 122235679999999999997653 479999999
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCC
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNA 1157 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~ 1157 (1303)
+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+||.++++++||+++++|||||+||+||||.||||.. .+
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~ 1240 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EY 1240 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876 47
Q ss_pred CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000751 1158 SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDT 1237 (1303)
Q Consensus 1158 ~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~ 1237 (1303)
+|++||+|++.|+|+++|+++|+|||+.|.|+|.|||.||||++||||||||++|||+||||||++|++|+..||++|++
T Consensus 1241 sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1241 SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhc-CchhHHHHhhh
Q 000751 1238 LIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQPH 1292 (1303)
Q Consensus 1238 ~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~-~g~y~~l~~~~ 1292 (1303)
.|+ +||||+||||++|+.+||||+|||+|+|+|+|+|++|+++ ++.|++++.+.
T Consensus 1321 ~F~-dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1321 EFK-DCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEA 1375 (1381)
T ss_pred Hhc-CCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHH
Confidence 987 5999999999999999999999999999999999999987 66777666543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-154 Score=1556.67 Aligned_cols=1090 Identities=19% Similarity=0.256 Sum_probs=811.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000751 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIA 134 (1303)
Q Consensus 55 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (1303)
..++.++...++..+|+|+++++..++++. ++|++++++++|++++++++. .+..++...+.+++++++++ +.++
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~---~~lg 440 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLY---QQLG 440 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 356777777888899999999999999884 889999999999999999874 34444444433333333332 2344
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 000751 135 LITLCTGP---FIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211 (1303)
Q Consensus 135 l~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 211 (1303)
+++++.++ +++.+..++.++.++..++.++..++..+.+.|.++|+++||+|+||+.+.+++.+..++..+...+..
T Consensus 441 ~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~ 520 (1622)
T PLN03130 441 VASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQ 520 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222 233334456677777888888888999999999999999999999999999999988888777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000751 212 LVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS 291 (1303)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 291 (1303)
....+...+..... ..+.++++|++++..|.+++|.+++++.++..+..|+..++..+..+.+++++++||.++++.+
T Consensus 521 ~~~~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 521 LLSAFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 55544333322221 1345567889999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEE
Q 000751 292 SSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL-GEVLL 370 (1303)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~ 370 (1303)
+........ .....+.|+++||+|+|++++++++|+|+||+|++|++++||||||||||||+++|+|+++|++ |+|.+
T Consensus 599 e~~~~~~~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l 677 (1622)
T PLN03130 599 ERVLLPNPP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI 677 (1622)
T ss_pred ccccccCCc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE
Confidence 332111111 1112346999999999975445689999999999999999999999999999999999999999 99985
Q ss_pred CCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChH
Q 000751 371 DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (1303)
Q Consensus 371 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgG 450 (1303)
|++|+||+|+||||++||||||+||+++++++++++++.|+++++++.||+|++|.|||+|.+||||
T Consensus 678 -------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 678 -------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred -------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChH
Q 000751 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 451 qkqrialARal~~~~~ililDe~ts~lD~~~~~~i~-~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~ 529 (1303)
||||||||||+|++|+||||||||||||+++++++. ++++...+++|+|+||||++.++.||+|++|++|+|++.|+|+
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999998775 6677777899999999999999999999999999999999999
Q ss_pred HHhhcChhHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCCCCCCCCC
Q 000751 530 ELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQES 609 (1303)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (1303)
||+++++.|++++..+...+.... + .. ..... + . ..
T Consensus 825 eL~~~~~~~~~l~~~~~~~~~~~~----~-~~-----~~~~~------~-------------------------~---~~ 860 (1622)
T PLN03130 825 ELSNNGPLFQKLMENAGKMEEYVE----E-NG-----EEEDD------Q-------------------------T---SS 860 (1622)
T ss_pred HHHhcchhHHHHHHhccccccccc----c-cc-----ccccc------c-------------------------c---cc
Confidence 999988999888764321100000 0 00 00000 0 0 00
Q ss_pred CCCCCCchhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCcccccccccc
Q 000751 610 PKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTF 689 (1303)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1303)
. +. . .... .. . .. . .. ..
T Consensus 861 ~----~~-~------------~~~~-----~~----------~------------~~-----------~-~~----~~-- 878 (1622)
T PLN03130 861 K----PV-A------------NGNA-----NN----------L------------KK-----------D-SS----SK-- 878 (1622)
T ss_pred c----cc-c------------cccc-----cc----------c------------cc-----------c-cc----cc--
Confidence 0 00 0 0000 00 0 00 0 00 00
Q ss_pred cCCCCCCCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH
Q 000751 690 SRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLRE 769 (1303)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1303)
... ..........++++.+......++.+++.... ++...+.+++..+..++.....++++.|.+..... ..
T Consensus 879 ~~~-~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~------~~ 950 (1622)
T PLN03130 879 KKS-KEGKSVLIKQEERETGVVSWKVLERYKNALGG-AWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK------TH 950 (1622)
T ss_pred ccc-cccchhhhhHHHHhcCccCHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC------CC
Confidence 000 00000000111111122223334444332211 12222222222222333333344555444422110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHH
Q 000751 770 EVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFS 849 (1303)
Q Consensus 770 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~ 849 (1303)
....|.+++++++++..++.+++.+++.+.+.+++.++|.+++++++++|++|||. +++|+++||+++|++.++..++
T Consensus 951 ~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~ 1028 (1622)
T PLN03130 951 GPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVA 1028 (1622)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHH
Confidence 13456777888888889999999999999999999999999999999999999985 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHH
Q 000751 850 NRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMH----RKASLVLEDAVRNIYT 925 (1303)
Q Consensus 850 ~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~gi~t 925 (1303)
..+..++..++.+++.++++++++|... ++++|+.+++++.+.+ +.+..++.++.. +....++.|+++|+.|
T Consensus 1029 ~~~~~~~~~~~~~i~~~i~i~~~~~~~~---~~~~pl~~~~~~~~~~-~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~t 1104 (1622)
T PLN03130 1029 VFVNMFLGQIFQLLSTFVLIGIVSTISL---WAIMPLLVLFYGAYLY-YQSTAREVKRLDSITRSPVYAQFGEALNGLST 1104 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHhCCHHH
Confidence 9999999998888888888777776332 3334444333333333 333455555444 3455789999999999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCc---------cCHHHHHHH
Q 000751 926 VVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGY---------MDLPTALKE 996 (1303)
Q Consensus 926 I~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~---------~~~~~~~~~ 996 (1303)
||+|+.++++.+.+.+..+...+..+... ....|.++.. .++...++++.+...+..+. .++|.++..
T Consensus 1105 Iraf~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~wl~~~l--~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~ 1181 (1622)
T PLN03130 1105 IRAYKAYDRMAEINGRSMDNNIRFTLVNM-SSNRWLAIRL--ETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSY 1181 (1622)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHH
Confidence 99999999888888777666544433322 2222332221 11122222222223233221 122222221
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC--CCCcccEEEEeeEEECCCCCCcceeee
Q 000751 997 YMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKP--PNVYGSIELKNVDFCYPSRPEVLVLSN 1074 (1303)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~g~I~~~~Vsf~Y~~~~~~~vL~~ 1074 (1303)
. ......+...........+...+.+|+.++++.+++.+...+...++ ++..|.|+|+||+|+|+++. ++||+|
T Consensus 1182 ~---~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~VL~~ 1257 (1622)
T PLN03130 1182 A---LNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHG 1257 (1622)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-Cceecc
Confidence 1 11122222333344456677889999999987654332111111111 13468999999999996432 369999
Q ss_pred eeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCC
Q 000751 1075 FSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYAR 1154 (1303)
Q Consensus 1075 isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~ 1154 (1303)
+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||+++.
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~ 1337 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN 1337 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000751 1155 HNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEA 1234 (1303)
Q Consensus 1155 ~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~ 1234 (1303)
.++|+++|+||+.|+++++|.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++
T Consensus 1338 -~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~ 1416 (1622)
T PLN03130 1338 -EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT 1416 (1622)
T ss_pred -CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhc-CchhHHHHhhhhh
Q 000751 1235 LDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQPHYG 1294 (1303)
Q Consensus 1235 l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~-~g~y~~l~~~~~~ 1294 (1303)
|++.++ +||+|+||||++|+++||||+||++|+|+|+|+|+||+++ +|.|++|++++..
T Consensus 1417 I~~~~~-~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1417 IREEFK-SCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred HHHHCC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 999865 6999999999999999999999999999999999999987 6999999976543
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-153 Score=1545.68 Aligned_cols=1090 Identities=18% Similarity=0.243 Sum_probs=810.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHH
Q 000751 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAF-VNCWQI 133 (1303)
Q Consensus 55 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 133 (1303)
...+.++...++..+|+|+++++..++++. ++|++++++++|++.+++++ .. ++.++..++.+++.+ ++.+.+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~----l~~l~~~p~~ii~~~~~l~~~l 439 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQ----LHGLWSAPFRIIVSMVLLYQQL 439 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788899999999999999884 88999999999999999875 33 333333333333322 233344
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q 000751 134 ALITLCTGPFIVA---AGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILI 210 (1303)
Q Consensus 134 ~l~~l~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 210 (1303)
++++++.++++++ +..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+.
T Consensus 440 g~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~ 519 (1495)
T PLN03232 440 GVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA 519 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333322222 3445677788888888889999999999999999999999999999999999888888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000751 211 SLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISR 290 (1303)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 290 (1303)
....++...+..... ..+.++++|++++.+|.+++|.+++++.++..+..|+..++..+..+.+++++.+||.++++.
T Consensus 520 ~~~~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 520 QLLSAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 665554333222211 223346789999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q 000751 291 SSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 370 (1303)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 370 (1303)
+++...... ......+.|+|+|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+.
T Consensus 598 ~~~~~~~~~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~- 675 (1495)
T PLN03232 598 EERILAQNP-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV- 675 (1495)
T ss_pred ccccccccC-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-
Confidence 543211111 111123469999999999754456899999999999999999999999999999999999999998763
Q ss_pred CCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChH
Q 000751 371 DGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (1303)
Q Consensus 371 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgG 450 (1303)
++|++|+||+|+||||++||||||+||+++++++++++++.|+++++++.||+||+|.|||+|.+||||
T Consensus 676 -----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGG 744 (1495)
T PLN03232 676 -----------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGG 744 (1495)
T ss_pred -----------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChH
Q 000751 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ-EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 451 qkqrialARal~~~~~ililDe~ts~lD~~~~~~i~-~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~ 529 (1303)
||||||||||+|++|+||||||||||||+++++++. ++++...+++|+|+||||++.++.||+|++|++|+|++.|+|+
T Consensus 745 QkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~ 824 (1495)
T PLN03232 745 QKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFA 824 (1495)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999885 4567677899999999999999999999999999999999999
Q ss_pred HHhhcChhHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCCCCCCCCC
Q 000751 530 ELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQES 609 (1303)
Q Consensus 530 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (1303)
|++++++.|+++++.+...+... .+. .... . ... ..
T Consensus 825 eL~~~~~~~~~l~~~~~~~~~~~-------~~~-----~~~~-----~--------------------------~~~-~~ 860 (1495)
T PLN03232 825 ELSKSGSLFKKLMENAGKMDATQ-------EVN-----TNDE-----N--------------------------ILK-LG 860 (1495)
T ss_pred HHHhcchhHHHHHHhcccccccc-------ccc-----cccc-----c--------------------------ccc-cc
Confidence 99999999998876543210000 000 0000 0 000 00
Q ss_pred CCCCCCchhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCcccccccccc
Q 000751 610 PKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTF 689 (1303)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1303)
+.. .. + . .. .... .. .
T Consensus 861 ~~~--~~------------------------------------~--~--------~~--~~~~-----~~------~--- 876 (1495)
T PLN03232 861 PTV--TI------------------------------------D--V--------SE--RNLG-----ST------K--- 876 (1495)
T ss_pred ccc--cc------------------------------------c--c--------cc--cccc-----cc------c---
Confidence 000 00 0 0 00 0000 00 0
Q ss_pred cCCCCCCCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH
Q 000751 690 SRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLRE 769 (1303)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1303)
+....+......++++.+......++++++.... ++...+.+++..+..++.....++++.|.+ ..... ..
T Consensus 877 --~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~----~~~~~--~~ 947 (1495)
T PLN03232 877 --QGKRGRSVLVKQEERETGIISWNVLMRYNKAVGG-LWVVMILLVCYLTTEVLRVSSSTWLSIWTD----QSTPK--SY 947 (1495)
T ss_pred --ccccchhhhhhHHHHhcCcccHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCC--CC
Confidence 0000000000111111222223344444433221 122222222222222222222233333322 11000 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHH
Q 000751 770 EVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFS 849 (1303)
Q Consensus 770 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~ 849 (1303)
....|+.+|++++++..++.+++.+++...+.+++.++|.+++++++++|++||++ +++|+++||+++|++.++..++
T Consensus 948 ~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~ 1025 (1495)
T PLN03232 948 SPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVA 1025 (1495)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHH
Confidence 23467888889999999999999999999999999999999999999999999984 7899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHH
Q 000751 850 NRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMH----RKASLVLEDAVRNIYT 925 (1303)
Q Consensus 850 ~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~gi~t 925 (1303)
..+..++..++.+++++++++.+++.. +++++|+.+++.+.+.+ ..+.+++.++.. +....++.|++.|+.|
T Consensus 1026 ~~~~~~~~~~~~~i~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~t 1101 (1495)
T PLN03232 1026 NLMNMFMNQLWQLLSTFALIGTVSTIS---LWAIMPLLILFYAAYLY-YQSTSREVRRLDSVTRSPIYAQFGEALNGLSS 1101 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHHHHHHhcChHH
Confidence 998888888888887777776666532 22333444333333333 223344444433 3445778999999999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh-cCccC----HHHHHHHHH-H
Q 000751 926 VVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVR-DGYMD----LPTALKEYM-V 999 (1303)
Q Consensus 926 I~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~g~~~----~~~~~~~~~-~ 999 (1303)
||+|+.++++.+.+.+..+...+..+... ....|..+.. ..++..++++.+...+. .+.++ ....+..++ +
T Consensus 1102 Iraf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~wl~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~ 1178 (1495)
T PLN03232 1102 IRAYKAYDRMAKINGKSMDNNIRFTLANT-SSNRWLTIRL--ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSY 1178 (1495)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHH
Confidence 99999999988888777666554443322 2222222221 11222222222333332 23221 111111111 1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC--CCCcccEEEEeeEEECCCCCCcceeeeeeE
Q 000751 1000 FSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKP--PNVYGSIELKNVDFCYPSRPEVLVLSNFSL 1077 (1303)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl 1077 (1303)
.......+.........+.....+.+|+.++.+.+++.+.......++ ++..|.|+|+||+|+|+++. ++||+|+||
T Consensus 1179 ~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~-~~vL~~isl 1257 (1495)
T PLN03232 1179 TLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGL-PPVLHGLSF 1257 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCC-CcccccceE
Confidence 111222333444555566778889999999987654432111111111 23458899999999996432 369999999
Q ss_pred EeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCC
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNA 1157 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~ 1157 (1303)
+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|+||||||+||+|||||||+++. ++
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~ 1336 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EH 1336 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 58
Q ss_pred CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000751 1158 SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDT 1237 (1303)
Q Consensus 1158 ~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~ 1237 (1303)
+|+|+++|++.|+++++|+++|+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++
T Consensus 1337 sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1337 NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcC-chhHHHHhhhhh
Q 000751 1238 LIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKN-GLYVRLMQPHYG 1294 (1303)
Q Consensus 1238 ~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~-g~y~~l~~~~~~ 1294 (1303)
.++ +||+|+||||++++++||+|+||++|+|+|+|+|+||++++ |.|++|++++..
T Consensus 1417 ~~~-~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1417 EFK-SCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred HcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 865 69999999999999999999999999999999999999986 599999986644
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-148 Score=1498.02 Aligned_cols=1120 Identities=19% Similarity=0.239 Sum_probs=828.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-
Q 000751 54 WILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQ- 132 (1303)
Q Consensus 54 ~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (1303)
....+.++...++..+|+|+++++...+++. ++|+++|++++|++++.++.. .++.+|..++.+++.+++-|.
T Consensus 382 ~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~~-----~~~~~~~~~~~i~~~~~ll~~~ 455 (1522)
T TIGR00957 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLAT-----YINMIWSAPLQVILALYFLWLN 455 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888899999999999999999884 889999999999999987542 444444444443333333332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 000751 133 ---IALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGIL 209 (1303)
Q Consensus 133 ---l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 209 (1303)
.+++.++++++++.+..++.++.++..++.++..++..+.+.|.++||++||+|+||+.+.+++.+..++..+...+
T Consensus 456 ~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~ 535 (1522)
T TIGR00957 456 LGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKK 535 (1522)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344445555566677888888888899999999999999999999999999999999999988887776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 210 ISLVQGLGLGFTYGLAICSCALQLWVGRFLVTH--NKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEM 287 (1303)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~--g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~ 287 (1303)
......+......... ..+.++.++.+.+.. +.++.+.+++++.++..+..|+..++..+..+.+++++.+||.++
T Consensus 536 ~~~~~~~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~ 613 (1522)
T TIGR00957 536 SAYLHAVGTFTWVCTP--FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIF 613 (1522)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443222211111 112223345566653 568899999888888888899999999999999999999999999
Q ss_pred hccCCCCCCC-CCCCCC-CCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCC
Q 000751 288 ISRSSSTTNY-DGNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL 365 (1303)
Q Consensus 288 l~~~~~~~~~-~~~~~~-~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 365 (1303)
++.+++.... ...... ...+.|+++|++|+|++ .++++|+|+||+|++|++++|+||||||||||+++|+|+++|++
T Consensus 614 l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~ 692 (1522)
T TIGR00957 614 LSHEELEPDSIERRTIKPGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 692 (1522)
T ss_pred HcCcccccccccccccCCCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC
Confidence 9765432111 001111 11236999999999963 23579999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCC
Q 000751 366 GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445 (1303)
Q Consensus 366 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~ 445 (1303)
|+|.++| +|+||+|+||+|++||+|||.||.+.++++++++++.|++.+++..+|+|++|.+|++|.
T Consensus 693 G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~ 759 (1522)
T TIGR00957 693 GHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGV 759 (1522)
T ss_pred cEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCC
Confidence 9999997 599999999999999999999998888899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCCeEEEEecCCccccccCEEEEEeCceE
Q 000751 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL---LMLGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (1303)
Q Consensus 446 ~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~---~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i 522 (1303)
+|||||||||+||||+|++|+|+|||||||+||+++++++.+.+.+ +.+++|+|+|||+++.++.||+|++|++|+|
T Consensus 760 ~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKI 839 (1522)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999999988853 4578999999999999999999999999999
Q ss_pred eeccChHHHhhcChhHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCC
Q 000751 523 FEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDG 602 (1303)
Q Consensus 523 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1303)
++.|+|+++.++++.|.++...+....... ...+.. ... ..........
T Consensus 840 ~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~-----~~~~~~-----~~~---~~~~~~~~~~------------------ 888 (1522)
T TIGR00957 840 SEMGSYQELLQRDGAFAEFLRTYAPDEQQG-----HLEDSW-----TAL---VSGEGKEAKL------------------ 888 (1522)
T ss_pred EeeCCHHHHHhcchhHHHHHHhhccccccc-----cccccc-----ccc---cccccccccc------------------
Confidence 999999999998888888876443211000 000000 000 0000000000
Q ss_pred CCCCCCCCCCCCCchhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccc
Q 000751 603 AFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNE 682 (1303)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1303)
.+ ..... ..... .. ...... ... ...... . . ...
T Consensus 889 -~~-~~~~~--~~~~~--------------~~-~~~~~~------------------~~~--~~~~~~-~-----~-~~~ 922 (1522)
T TIGR00957 889 -IE-NGMLV--TDVVG--------------KQ-LQRQLS------------------ASS--SDSGDQ-S-----R-HHG 922 (1522)
T ss_pred -cc-ccccc--ccccc--------------ch-hhhhcc------------------ccc--cccccc-c-----c-ccc
Confidence 00 00000 00000 00 000000 000 000000 0 0 000
Q ss_pred ccccccccCCCCCCCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000751 683 RSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPE 762 (1303)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1303)
...... ..............++++.+......++.++.... +...++.++...+..++.....++++.|.+......
T Consensus 923 ~~~~~~-~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~ 999 (1522)
T TIGR00957 923 SSAELQ-KAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIG--LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNG 999 (1522)
T ss_pred cccccc-ccccccchhhhHHHHHHhcCcccHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 000000 00000000000001111112223344444444322 222222222222233333344455555543211000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHH
Q 000751 763 ERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDAT 842 (1303)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~ 842 (1303)
.......|..+|++++++..++.++..+++...+.+++.++|.+++++++++|++|||. +++|+++||+++|++
T Consensus 1000 ----~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~Di~ 1073 (1522)
T TIGR00957 1000 ----TQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELD 1073 (1522)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHHHH
Confidence 01112345667888888888888888888999999999999999999999999999985 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 000751 843 FVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMH----RKASLVLED 918 (1303)
Q Consensus 843 ~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e 918 (1303)
.++..++..+..++..++.+++.++++++.+|.++++++++ +++..++++++. +..++.++.. +....++.|
T Consensus 1074 ~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~r~~~~~~~~~~s~l~~~~~E 1149 (1522)
T TIGR00957 1074 TVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPL---GLLYFFVQRFYV-ASSRQLKRLESVSRSPVYSHFNE 1149 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999988888888887655444333 333333333333 3445544433 445578999
Q ss_pred HHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh-cCccCHHHHHHHH
Q 000751 919 AVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVR-DGYMDLPTALKEY 997 (1303)
Q Consensus 919 ~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~g~~~~~~~~~~~ 997 (1303)
++.|+.|||+|++++++.+++.+..+...+..+...... .|..... ..++.+++++.+...+. .+.++.|.+....
T Consensus 1150 ~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~g~l~~~l 1226 (1522)
T TIGR00957 1150 TLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN-RWLAVRL--ECVGNCIVLFAALFAVISRHSLSAGLVGLSV 1226 (1522)
T ss_pred HhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999888887766655433322 2222211 11122233334444443 5678888766666
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC--CCCcccEEEEeeEEECCCCCCcceeeee
Q 000751 998 MVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKP--PNVYGSIELKNVDFCYPSRPEVLVLSNF 1075 (1303)
Q Consensus 998 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~g~I~~~~Vsf~Y~~~~~~~vL~~i 1075 (1303)
.+......++.........+.+...+.+|+.++.+.+++.+.......++ .+..|.|+|+||+|+|+++. ++||+||
T Consensus 1227 ~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~i 1305 (1522)
T TIGR00957 1227 SYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHI 1305 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccce
Confidence 65555666666777777888889999999999987654322111111111 13468999999999997653 3699999
Q ss_pred eEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCC
Q 000751 1076 SLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARH 1155 (1303)
Q Consensus 1076 sl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~ 1155 (1303)
||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++..
T Consensus 1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~- 1384 (1522)
T TIGR00957 1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS- 1384 (1522)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999654
Q ss_pred CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000751 1156 NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEAL 1235 (1303)
Q Consensus 1156 ~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l 1235 (1303)
+++|+|+++|++.|+++++|.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|
T Consensus 1385 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957 1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHhh
Q 000751 1236 DTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQP 1291 (1303)
Q Consensus 1236 ~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~~ 1291 (1303)
++.++ +||+|+||||++++.+||||+|||+|+|+|+|+|+||++++|.|++|+++
T Consensus 1465 ~~~~~-~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1465 RTQFE-DCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 98866 69999999999999999999999999999999999999999999999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-141 Score=1424.71 Aligned_cols=1106 Identities=18% Similarity=0.225 Sum_probs=812.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHh--ccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 52 SCWILTGERQTAVIRSRYVQVLLNQDMSFFD--TYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVN 129 (1303)
Q Consensus 52 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (1303)
+.....+.++...++..+|+|+++++...+. + .++|+++|++++|++++.+++.. +..+....+.+++++++++.+
T Consensus 307 ~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~-~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~ 384 (1560)
T PTZ00243 307 YISIRCGLQYRSALNALIFEKCFTISSKSLAQPD-MNTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRL 384 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCC-CCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777888899999999987765 3 36799999999999999998743 344444444555555555544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Q 000751 130 CWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGIL 209 (1303)
Q Consensus 130 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 209 (1303)
..+.+++.++++++.+.+..++.++..+..++..+..++..+.+.|.++|||+||.++||+.+.+++.+..++..+...+
T Consensus 385 lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~ 464 (1560)
T PTZ00243 385 VGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRD 464 (1560)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555556677777777777788888889999999999999999999999999999999888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000751 210 ISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMIS 289 (1303)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 289 (1303)
......+...+......+. .++.++.+.+..+.++++.+++++.++..+..|+..++..+..+.++.+|++||.++++
T Consensus 465 ~~~~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~ 542 (1560)
T PTZ00243 465 VQLARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLE 542 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6666655444433333332 22345678888999999999999999999999999999999999999999999999997
Q ss_pred cCCCCC-------CC--------C--C---------------CC---------------------------CCCCCccEE
Q 000751 290 RSSSTT-------NY--------D--G---------------NT---------------------------LPSVHGNIE 310 (1303)
Q Consensus 290 ~~~~~~-------~~--------~--~---------------~~---------------------------~~~~~~~i~ 310 (1303)
.++... +. . . .. .......+.
T Consensus 543 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1560)
T PTZ00243 543 CDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVV 622 (1560)
T ss_pred Cccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence 543100 00 0 0 00 000112467
Q ss_pred EEEEEEEcCCC-------------------------------------CCCCcccceeEEeeCCCEEEEECCCCCcHHHH
Q 000751 311 FRNVYFSYLSR-------------------------------------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSI 353 (1303)
Q Consensus 311 ~~~v~f~y~~~-------------------------------------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl 353 (1303)
++|++|+++.. +++++|+|+||+|++|++++|+||||||||||
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTL 702 (1560)
T PTZ00243 623 VEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTL 702 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHH
Confidence 88888875410 12458999999999999999999999999999
Q ss_pred HHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcc
Q 000751 354 IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLE 433 (1303)
Q Consensus 354 ~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 433 (1303)
+++|+|+++|++|+|.++ ++|+||+|+||+|++||+|||.|+...+++++.++++.|+++++++.+|
T Consensus 703 L~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 769 (1560)
T PTZ00243 703 LQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLG 769 (1560)
T ss_pred HHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhh
Confidence 999999999999999874 4799999999999999999999998777788999999999999999999
Q ss_pred cccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEEEEecCCccccccC
Q 000751 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE-ALDLLMLGRSTIIIARRLSLIRNAD 512 (1303)
Q Consensus 434 ~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~-~l~~~~~~~t~i~ith~~~~~~~~d 512 (1303)
+|++|.+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+.+ ++....+|+|+|+|||+++.++.||
T Consensus 770 ~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad 849 (1560)
T PTZ00243 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRAD 849 (1560)
T ss_pred ccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999887765 4445557899999999999999999
Q ss_pred EEEEEeCceEeeccChHHHhhcChhHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccc
Q 000751 513 YIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQ 592 (1303)
Q Consensus 513 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1303)
+|++|++|++++.|+++++++. +.|.++........... + . +........
T Consensus 850 ~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~~~~~~~~-----~--~--------~~~~~~~~~-------------- 899 (1560)
T PTZ00243 850 YVVALGDGRVEFSGSSADFMRT-SLYATLAAELKENKDSK-----E--G--------DADAEVAEV-------------- 899 (1560)
T ss_pred EEEEEECCEEEEecCHHHHHhC-hHHHHHHHhhccccccc-----c--c--------ccccccccc--------------
Confidence 9999999999999999999875 45666654321110000 0 0 000000000
Q ss_pred cccccCCCCCCCCCCCCCCCCCCchhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCC
Q 000751 593 RVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPIS 672 (1303)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1303)
+ .. .......... ... ..
T Consensus 900 --------~--~~-~~~~~~~~~~--------------------------------------------~~~-~~------ 917 (1560)
T PTZ00243 900 --------D--AA-PGGAVDHEPP--------------------------------------------VAK-QE------ 917 (1560)
T ss_pred --------c--cc-cccccccccc--------------------------------------------ccc-cc------
Confidence 0 00 0000000000 000 00
Q ss_pred CCCCCCCcccccccccccCCCCCCCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 673 PLLTSDPKNERSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIG 752 (1303)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1303)
...+..... .. ..........++++.+...+..+++++..... +.+.++.++..++...+.....++++
T Consensus 918 ------~~~~~~~~~--~~--~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~-~~~~~~~l~~~~~~~~~~~~~~~wl~ 986 (1560)
T PTZ00243 918 ------GNAEGGDGA--AL--DAAAGRLMTREEKASGSVPWSTYVAYLRFCGG-LHAAGFVLATFAVTELVTVSSGVWLS 986 (1560)
T ss_pred ------ccccccccc--cc--ccccchhhhHHHHhcCcccHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 00 00000000111111122233344444433221 11111111111112222222233343
Q ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhh
Q 000751 753 LIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADT 832 (1303)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~ 832 (1303)
.|...... .....|+.+|+++.++..++.+++.+.....+.+...++|.++|++++++|+.|||. ++.|+
T Consensus 987 ~w~~~~~~--------~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ 1056 (1560)
T PTZ00243 987 MWSTRSFK--------LSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGR 1056 (1560)
T ss_pred HhcccccC--------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccH
Confidence 33321110 112245666666666666666667677777778888999999999999999999985 78999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000751 833 LSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKM---- 908 (1303)
Q Consensus 833 l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~---- 908 (1303)
++||+++|++.+++.++..+..++..++.+++.++++++.+|.+. ++++|+.++...+..+ +.+..++.++.
T Consensus 1057 ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~---~~~i~~~~~~~~i~~~-~~~~~r~~~r~~~~~ 1132 (1560)
T PTZ00243 1057 ILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVL---VALVPCGYLYYRLMQF-YNSANREIRRIKSVA 1132 (1560)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888888888887433 3334444443333333 33344555443
Q ss_pred HHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HhhcC
Q 000751 909 HRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGK--SVRDG 986 (1303)
Q Consensus 909 ~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~g 986 (1303)
.+....++.|++.|+.|||+|+.++.+.++|.+.++...+..+.......+......++..+..+++.+++.. ....+
T Consensus 1133 ~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1212 (1560)
T PTZ00243 1133 KSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRAT 1212 (1560)
T ss_pred hcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445688999999999999999999999999999888877666554433333333333333333333333322 22334
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-------------------------
Q 000751 987 YMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDD------------------------- 1041 (1303)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------- 1041 (1303)
.++++.+...+.+.......+.........+...+.+.+|+.++++..++++...
T Consensus 1213 ~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1292 (1560)
T PTZ00243 1213 SQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIE 1292 (1560)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccc
Confidence 4566654444444444455556666677778888999999999987544321000
Q ss_pred CCCC----CCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECC
Q 000751 1042 SSAV----KPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG 1117 (1303)
Q Consensus 1042 ~~~~----~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG 1117 (1303)
+... +.+...|.|+|+||+|+|++.. ++||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||
T Consensus 1293 ~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~-~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG 1371 (1560)
T PTZ00243 1293 PASPTSAAPHPVQAGSLVFEGVQMRYREGL-PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNG 1371 (1560)
T ss_pred cCCCcccCCCCCCCCeEEEEEEEEEeCCCC-CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 0000 0112358899999999997542 3699999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1118 RDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1118 ~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
+||+++++++||++|+||||||+||+|||||||+++. +++|+|+++||+.|+++++|.++|+||||.|||+|.+|||||
T Consensus 1372 ~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQ 1450 (1560)
T PTZ00243 1372 REIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQ 1450 (1560)
T ss_pred EEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHH
Confidence 9999999999999999999999999999999999864 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChH
Q 000751 1198 KQRIAIARVVLKN-APILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHD 1276 (1303)
Q Consensus 1198 rQRlaLARAllr~-p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~ 1276 (1303)
||||||||||+++ |+|||||||||+||++||+.|+++|++.++ +||+|+||||++++.+||+|+||++|+|+|+|+|+
T Consensus 1451 rQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1451 RQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPR 1529 (1560)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999996 899999999999999999999999998765 69999999999999999999999999999999999
Q ss_pred HHhhc-CchhHHHHhhhhh
Q 000751 1277 SLLAK-NGLYVRLMQPHYG 1294 (1303)
Q Consensus 1277 eLl~~-~g~y~~l~~~~~~ 1294 (1303)
||+++ +|.|++|++.+..
T Consensus 1530 eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1530 ELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred HHHhCCCCHHHHHHHHhCh
Confidence 99985 8999999987644
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-139 Score=1405.48 Aligned_cols=1182 Identities=18% Similarity=0.209 Sum_probs=808.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000751 53 CWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQ 132 (1303)
Q Consensus 53 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (1303)
.....+.++...+...+|+|+++++...+++. ++|++++++++|++++.+++... ..+....+.+++++++++.+..+
T Consensus 145 ~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~ 222 (1490)
T TIGR01271 145 GLHHLGMQMRIALFSLIYKKTLKLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEV 222 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666677999999999999884 88999999999999999876532 22333333344444555444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 133 IALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISL 212 (1303)
Q Consensus 133 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 212 (1303)
.+++.++++++++.+..++.++..+..++.++..++..+.+.|.++|||+||+|+||+.+.+++.+..++..+...+...
T Consensus 223 ~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~ 302 (1490)
T TIGR01271 223 NGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAY 302 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777778888888888888899999999999999999999999999999999999998888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccC
Q 000751 213 VQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLN-QAATNFYSFDQGRIAAYRLYEMISRS 291 (1303)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~a~~ri~~~l~~~ 291 (1303)
+..+...+..+.. ..+.++.++.+.+..+ ++++.+++++.++.++..|+. .++..+..+.++.++++||.++++.+
T Consensus 303 ~~~~~~~~~~~~~--~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~ 379 (1490)
T TIGR01271 303 LRYFYSSAFFFSG--FFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKE 379 (1490)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5544333322222 2334455667766654 678999998888888877874 68888999999999999999999765
Q ss_pred CCCCCCCCCCCCCCCccEEEEEEEEEcCCC-------------------------------CCCCcccceeEEeeCCCEE
Q 000751 292 SSTTNYDGNTLPSVHGNIEFRNVYFSYLSR-------------------------------PEIPILSGFYLTVPAKKAV 340 (1303)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-------------------------------~~~~~l~~i~l~i~~g~~~ 340 (1303)
+..... . ......++++|++|.|+.. ..+++|+|+||+|++|+++
T Consensus 380 e~~~~~--~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~ 455 (1490)
T TIGR01271 380 EYKTLE--Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLL 455 (1490)
T ss_pred cccccc--c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEE
Confidence 322111 0 0112359999999999531 0136899999999999999
Q ss_pred EEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHH
Q 000751 341 ALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAA 420 (1303)
Q Consensus 341 ~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~ 420 (1303)
+|+||+|||||||+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||.||..++++++.+++
T Consensus 456 ~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~ 522 (1490)
T TIGR01271 456 AVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVI 522 (1490)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHHHH
Confidence 99999999999999999999999999999998 49999999999999999999999877888899999
Q ss_pred HHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEE
Q 000751 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE-ALDLLMLGRSTI 499 (1303)
Q Consensus 421 ~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~-~l~~~~~~~t~i 499 (1303)
+.|++.+++..+|+|++|.+|++|.+|||||||||+||||+|++|+|+|||||||+||+++++++.+ ++..+.+++|+|
T Consensus 523 ~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvi 602 (1490)
T TIGR01271 523 KACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRI 602 (1490)
T ss_pred HHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 567777899999
Q ss_pred EEecCCccccccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCC
Q 000751 500 IIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQE 579 (1303)
Q Consensus 500 ~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (1303)
+|||+++.+..||+|++|++|+|++.|+++++.+.++.|.+.+........... ..++...++..........
T Consensus 603 lvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------ 675 (1490)
T TIGR01271 603 LVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSA-ERRNSILTETLRRVSIDGD------ 675 (1490)
T ss_pred EEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHhcccccccccc-ccccccccccccccccccc------
Confidence 999999999999999999999999999999999877777666542111000000 0000000000000000000
Q ss_pred CCCcccCCCCccccccccCCCCCCCCCCCCCCCCCCchhhhhhcCCCCCccCCCcc---cc----c--cccccccCCCCC
Q 000751 580 PSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDAADKEPS---IR----R--QDSFEMRLPELP 650 (1303)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~--~~~~~~~~~~~~ 650 (1303)
.+.. ..+.....+ ...+......... ...........+. .. . ............
T Consensus 676 --~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1490)
T TIGR01271 676 --STVF-----------SGPETIKQS-FKQPPPEFAEKRK---QSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPS 738 (1490)
T ss_pred --cccc-----------ccccccccc-ccccccccccccc---ccccccccccccccccccccccccccccccchhcccc
Confidence 0000 000000000 0000000000000 0000000000000 00 0 000000000000
Q ss_pred ccc-----c---ccccccCCCCC--CCCCC------CCCCCCCC--Ccccc--------------------cccccccCC
Q 000751 651 KID-----V---HSSNRQTSNGS--DPESP------ISPLLTSD--PKNER--------------------SHSQTFSRP 692 (1303)
Q Consensus 651 ~~~-----~---~~~~~~~~~~~--~~~~~------~~~~~~~~--~~~~~--------------------~~~~~~~~~ 692 (1303)
..+ . ........... .++.. ........ .+... .......+.
T Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1490)
T TIGR01271 739 ERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRR 818 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0 00000000000 00000 00000000 00000 000000000
Q ss_pred CCCC-----------CCCCcchhhhh---hhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000751 693 HSHS-----------DDFPTKVREEE---SKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAY 758 (1303)
Q Consensus 693 ~~~~-----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1303)
.... ........+++ .+...+..|++++.... .+.++++.+++.++..++..+..+|+..|....
T Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~ 897 (1490)
T TIGR01271 819 LSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNR-NLVFVLIFCLVIFLAEVAASLLGLWLITDNPSA 897 (1490)
T ss_pred ccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhhHHHHhccccc
Confidence 0000 00000000111 12223344555544322 122222222222222333333333443332100
Q ss_pred --cC-Ccchhh-h---------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q 000751 759 --YK-PEERHH-L---------REEVNKW-CLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFD 824 (1303)
Q Consensus 759 --~~-~~~~~~-~---------~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd 824 (1303)
+. ...... . .....+| .+++++++++..++.+++.+++.+.+.+.+.++|.+++++++++|++||+
T Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~ 977 (1490)
T TIGR01271 898 PNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN 977 (1490)
T ss_pred ccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC
Confidence 00 000000 0 0011122 33444444455667777888889999999999999999999999999998
Q ss_pred cccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 825 EEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRG 904 (1303)
Q Consensus 825 ~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~ 904 (1303)
. +++|+++||+++|++.+++.++..+..++..++.+++.++++++++|.+++ +++|+++++.+++.++. +.+++
T Consensus 978 ~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l---~~~~l~~~~~~~~~~~~-~~~r~ 1051 (1490)
T TIGR01271 978 T--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI---AAIPVAVIFIMLRAYFL-RTSQQ 1051 (1490)
T ss_pred C--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHH
Confidence 5 789999999999999999999999999999999999888888888887544 34444444333333333 34555
Q ss_pred HHHHHH----HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHH
Q 000751 905 IQKMHR----KASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFS-QFLLFA--CNALLLW 977 (1303)
Q Consensus 905 ~~~~~~----~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~ 977 (1303)
.++... ....++.|++.|+.|||+|++++++.+++.+..+...+..+..... ..|..+. .++..+ ..+++++
T Consensus 1052 l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~wl~~~~~~i~~~~~~~~~~l~ 1130 (1490)
T TIGR01271 1052 LKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST-LRWFQMRIDIIFVFFFIAVTFIA 1130 (1490)
T ss_pred HHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 554433 4457899999999999999999999999999888655443332222 2222211 111111 1111222
Q ss_pred HHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-------------C
Q 000751 978 YTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSS-------------A 1044 (1303)
Q Consensus 978 ~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------~ 1044 (1303)
++...+..|. ++.++ .+.......+.........+.....+.+|+.++.+.+++....... .
T Consensus 1131 ~~~~~~~~g~--~g~~l---~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 1205 (1490)
T TIGR01271 1131 IGTNQDGEGE--VGIIL---TLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIEN 1205 (1490)
T ss_pred HHHhcCCccH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccc
Confidence 2222222221 22222 1222222333444445556677788999999998655432211000 0
Q ss_pred -CCC--CCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCC
Q 000751 1045 -VKP--PNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLK 1121 (1303)
Q Consensus 1045 -~~~--~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~ 1121 (1303)
..+ ++..|.|+|+||+|+|++. .+++|+||||+|+|||+||||||||||||||+++|+|+|+ .+|+|+|||+||+
T Consensus 1206 ~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~ 1283 (1490)
T TIGR01271 1206 PHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWN 1283 (1490)
T ss_pred CCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcc
Confidence 011 1345899999999999754 3479999999999999999999999999999999999998 7999999999999
Q ss_pred CCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1122 LYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1122 ~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
+++++.+|++|+||||||+||+||||+||+++. .++|+++|+||+.|+++++|.++|+||||+|||+|.+|||||||||
T Consensus 1284 ~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1284 SVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred cCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 999999999999999999999999999999875 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
||||||+++|+|||||||||+||.+||+.|+++|++.++ +||||+||||++++.+||+|+||++|+|+|.|+|++|+++
T Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 999999999999999999999999999999999999866 6999999999999999999999999999999999999998
Q ss_pred CchhHHHHhhhhhccc
Q 000751 1282 NGLYVRLMQPHYGKGL 1297 (1303)
Q Consensus 1282 ~g~y~~l~~~~~~~~~ 1297 (1303)
+|.|++|++++..+..
T Consensus 1442 ~~~f~~l~~~~~~~~~ 1457 (1490)
T TIGR01271 1442 TSLFKQAMSAADRLKL 1457 (1490)
T ss_pred CcHHHHHHHHhChhcc
Confidence 9999999987766543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-108 Score=963.22 Aligned_cols=576 Identities=36% Similarity=0.572 Sum_probs=540.7
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 715 SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHF 794 (1303)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 794 (1303)
.+|+++.+.++.|+++..+.++..+......+.+++++.+++.++... .........+..+.++.++..++.+++.+
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~---~~~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD---DSADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999998889999999999999887621 11344555677888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 795 YFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEW 874 (1303)
Q Consensus 795 ~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~ 874 (1303)
++.++++++..++|..+|+++++++++|||. |.+|+|++|++.|+..+.+.++..+...+.+++..++++.++++++|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 9999999999999999999999999999996 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000751 875 RLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHG 954 (1303)
Q Consensus 875 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1303)
+|+++.++.+|++++...++.+++++.+++.++..+.++....|.+++++|||+|+.|.+..++|.+.+++..+-..+.+
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q 000751 955 MAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRV 1034 (1303)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1034 (1303)
...+++++...+...+....++++|++++..|.++.+.+..+.++..+...++.........+.++..+..|+|+++++.
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999887777777777777777788888999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEE
Q 000751 1035 PKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114 (1303)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~ 1114 (1303)
|..+++ ... .|....|.|+|+||+|+||++|+.+||||+||+|+|||.||+||||||||||++++|+|||+|++|+|+
T Consensus 449 P~i~~~-G~~-~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 449 PRIPLT-GTL-APDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCC-Ccc-ccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 988765 221 222578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCC
Q 000751 1115 LDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194 (1303)
Q Consensus 1115 idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1194 (1303)
+||+||++++.++||++||+|.|||+||+|||+|||.||.+++++|||.+|+++|++|+||..+|+||||.|||+|.+||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecC
Q 000751 1195 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1195 gGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt 1274 (1303)
|||||||||||||+|||+||||||||||||+++|..||++|++..+ ++|||+|||||+|+++||+|+|+++|+|+|.|+
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 9999999999999999999999999999999999999999998866 599999999999999999999999999999999
Q ss_pred hHHHhhcC-chhHHHHhhhhhcccc
Q 000751 1275 HDSLLAKN-GLYVRLMQPHYGKGLR 1298 (1303)
Q Consensus 1275 ~~eLl~~~-g~y~~l~~~~~~~~~~ 1298 (1303)
|+||+++. |.|++|+++|......
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~~~~ 710 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDSGEP 710 (716)
T ss_pred HHHHhhCcccHHHHHHHHhcccCCC
Confidence 99999986 8999999999876543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-105 Score=937.65 Aligned_cols=519 Identities=38% Similarity=0.584 Sum_probs=496.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHH
Q 000751 28 WLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSE 107 (1303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~ 107 (1303)
.+...+..+..+.++..++.+++.+++..+++++..++|.++|+++++++++|||++ ++||++||++.|+..+.+.+..
T Consensus 186 ~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~ 264 (716)
T KOG0058|consen 186 ALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQ 264 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHH
Confidence 344556666667777888899999999999999999999999999999999999995 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 000751 108 KVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFT 187 (1303)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 187 (1303)
.+...+.+.+..++++++|+++||+|+++.++.+|+++++..+++++.++.+++.|++.+++++..+|.+++|||||+|+
T Consensus 265 nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa 344 (716)
T KOG0058|consen 265 NLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFA 344 (716)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHH
Q 000751 188 NETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQA 267 (1303)
Q Consensus 188 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~ 267 (1303)
.|+.+.++|.+..++..+...|.....+.+.....+...+..+.++++|++++.+|.+|.|.+.+|++|......++..+
T Consensus 345 ~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~l 424 (716)
T KOG0058|consen 345 AEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGL 424 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC-CCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCC
Q 000751 268 ATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRN 346 (1303)
Q Consensus 268 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~s 346 (1303)
...+..+.++..|.+|++|++|.+|..+.. +...| ...|.|+|+||+|+||.+++.++|+|+||+|+|||+||+||||
T Consensus 425 s~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPS 503 (716)
T KOG0058|consen 425 SSFYSELMKGVGASERVFELMDRKPRIPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPS 503 (716)
T ss_pred HHHHHHHHHhcchHHHHHHHhccCCCCCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCC
Confidence 999999999999999999999998875444 43333 4678999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcc
Q 000751 347 GSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHA 425 (1303)
Q Consensus 347 GsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~ 425 (1303)
||||||+++||.+||+|++|+|++||+||+++++.+||++||+|.|||.||++||+|||+||. ++++|++.+|++.|++
T Consensus 504 GsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANa 583 (716)
T KOG0058|consen 504 GSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANA 583 (716)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred hHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCC
Q 000751 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (1303)
Q Consensus 426 ~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~ 505 (1303)
|+||.++|+||||.|||+|..|||||||||||||||++||.||||||+|||||+++|..++++|.+..+++|||+|+|||
T Consensus 584 h~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRL 663 (716)
T KOG0058|consen 584 HEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRL 663 (716)
T ss_pred HHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCEEEEEeCceEeeccChHHHhhcC-hhHHHHHHHHHhc
Q 000751 506 SLIRNADYIAVMDEGRLFEMGTHDELLATG-DLYAELLKCEEAA 548 (1303)
Q Consensus 506 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~~~ 548 (1303)
+++++||+|+|+++|+++|.|+|+||+++. |.|.++++.|...
T Consensus 664 STV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 664 STVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred hHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 999999999999999999999999999987 8999999988654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-96 Score=910.30 Aligned_cols=515 Identities=41% Similarity=0.671 Sum_probs=493.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHH
Q 000751 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGN 111 (1303)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~ 111 (1303)
++++++.+++..+++.+++.+++...++++..++|...|+++++++.+|||...++|.|.+|+.+|...++..+.+.+..
T Consensus 709 ~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~ 788 (1228)
T KOG0055|consen 709 WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSL 788 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHH
Confidence 66777788888899999999999999999999999999999999999999987677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHH
Q 000751 112 YIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETL 191 (1303)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 191 (1303)
++.++..++++++++|+++|+|+++++++.|++++..+...+++.....+..+.+.+++....|++++||||++|+.|++
T Consensus 789 vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~ 868 (1228)
T KOG0055|consen 789 VVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEK 868 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 192 AKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNF 271 (1303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~ 271 (1303)
+.+.|.+..+...+...+.+.+.++..++.+.+.++.+++.+|+|++++.+|.++..+++-+++.+.+....+.+....+
T Consensus 869 ~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~ 948 (1228)
T KOG0055|consen 869 FMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYA 948 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCC--CCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCc
Q 000751 272 YSFDQGRIAAYRLYEMISRSSSTTNY--DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSG 349 (1303)
Q Consensus 272 ~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsG 349 (1303)
..+.+++.|+.+++++++.++..+.. .+...++.+|+|+|+||+|+||++++.++|+|+||+|++||++|||||||||
T Consensus 949 Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCC
Confidence 99999999999999999998754332 2223456788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHH
Q 000751 350 KSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTF 428 (1303)
Q Consensus 350 KSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~ 428 (1303)
|||++.||.|||+|++|.|.|||+|++++++++||++||.|+|||.||++||||||+||. +++++|+.+|++.|++|+|
T Consensus 1029 KSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~F 1108 (1228)
T KOG0055|consen 1029 KSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNF 1108 (1228)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999994 7899999999999999999
Q ss_pred HHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccc
Q 000751 429 ISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508 (1303)
Q Consensus 429 i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~ 508 (1303)
|.+||+||||.|||+|.+||||||||||||||++|||+||||||+|||||.++|+.++++|++.+.|||+|+|||||+++
T Consensus 1109 I~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTI 1188 (1228)
T KOG0055|consen 1109 ISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTI 1188 (1228)
T ss_pred HhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHHH
Q 000751 509 RNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (1303)
Q Consensus 509 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 546 (1303)
++||.|+|+++|+|+|+|+|++|++++|.|.+|++.|.
T Consensus 1189 qnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1189 QNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred hcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 99999999999999999999999999999999998764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-91 Score=859.59 Aligned_cols=564 Identities=28% Similarity=0.468 Sum_probs=513.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 719 LAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGI 798 (1303)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 798 (1303)
++....+.+..+.-.++.+++..++..+.+++...++|...... ..+.+.....++++++++..++.+++.++...
T Consensus 145 f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~----~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~ 220 (709)
T COG2274 145 FIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA----SRSTLTVLAIGLLLAALFEALLRLLRTYLIAH 220 (709)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555555556666666777665432 23455566778888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 799 MGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLAL 878 (1303)
Q Consensus 799 ~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l 878 (1303)
.+.++...+-.++|+|++++|++||.+ .++|++++|+ +|.+.|+.+++......+.++.++++.++++++++|.+++
T Consensus 221 ~~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~l 297 (709)
T COG2274 221 LGKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTL 297 (709)
T ss_pred HHHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999964 6899999997 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 879 VALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIG 958 (1303)
Q Consensus 879 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1303)
++++.+|++++..++..+++++..++..+..++.++.+.|++.|++|||+.+.|.++..+|++.+.+..+..++......
T Consensus 298 i~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~ 377 (709)
T COG2274 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLAL 377 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999988888888999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000751 959 FAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKID 1038 (1303)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 1038 (1303)
....+..++..++..+++|+|+.++.+|.+|+|+++++.++......++....+....+.....+.+|+.++++.+++.+
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~ 457 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999876644
Q ss_pred CCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCe
Q 000751 1039 PDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGR 1118 (1303)
Q Consensus 1039 ~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~ 1118 (1303)
.+.. ....+...|+|+|+||+|+|+.+++ ++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++||+
T Consensus 458 ~~~~-~~~~~~~~g~I~~~nvsf~y~~~~~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 458 GDKT-LIHLPKLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred cccc-cccccccCceEEEEEEEEEeCCCCc-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 3321 2234456799999999999986643 7999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1119 DLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1119 di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
|++++++++||++|+|||||++||+|||||||+++.|+.++|++++||+.+++|+||.++|.||||+|||+|.+||||||
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
|||+|||||+++|+||||||||||||++||+.|.+.|.+... +||+|+||||++++++||||+|||+|+|+|+|||+||
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~el 694 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEEL 694 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchHhhhccEEEEccCCceeccCCHHHH
Confidence 999999999999999999999999999999999999999865 5999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHhhh
Q 000751 1279 LAKNGLYVRLMQPH 1292 (1303)
Q Consensus 1279 l~~~g~y~~l~~~~ 1292 (1303)
++.+|.|+++|+.|
T Consensus 695 l~~~g~y~~l~~~q 708 (709)
T COG2274 695 LAQGGLYARLYQQQ 708 (709)
T ss_pred HHhcChHHHHHhcc
Confidence 99999999999876
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-91 Score=856.82 Aligned_cols=528 Identities=32% Similarity=0.474 Sum_probs=494.6
Q ss_pred hHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHH
Q 000751 14 KFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQ 93 (1303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr 93 (1303)
.++|.+++..+. .++..+++.++.+++...++.+++.+...+.+.|+..++-.++++|++++|+.||+++ ++||+++|
T Consensus 179 ~viD~Vl~~~~~-~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR 256 (709)
T COG2274 179 IVIDKVLPDASR-STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISR 256 (709)
T ss_pred HHHHhhhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHH
Confidence 455666655433 3444455666667777888899999999999999999999999999999999999985 89999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 94 VLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIA 173 (1303)
Q Consensus 94 ~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1303)
+ +|.+.|+++++..+...+.++.+.++.+++|++++|.|++++++.+|+++++..++.+.+++..++..+..++.++..
T Consensus 257 ~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~l 335 (709)
T COG2274 257 V-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFL 335 (709)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 6 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHH
Q 000751 174 EQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTA 253 (1303)
Q Consensus 174 ~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~ 253 (1303)
.|++.|+++||+.+.|..+..+|++...+..+...+..........+..++..++.++++|+|+++|++|++|+|.++++
T Consensus 336 vE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf 415 (709)
T COG2274 336 VETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAF 415 (709)
T ss_pred HHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-CCCCCCCCccEEEEEEEEEcCCCCCCCcccceeE
Q 000751 254 LFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYD-GNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYL 332 (1303)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l 332 (1303)
.++...+..|+.++...+..+++.+.+.+|+.++++.|+|.+... ....++..++|+|+||+|+|+.+ ++++|+|+||
T Consensus 416 ~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL 494 (709)
T COG2274 416 NMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSL 494 (709)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeE
Confidence 999999999999999999999999999999999999987644332 12345677899999999999743 3479999999
Q ss_pred EeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CC
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DA 411 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~ 411 (1303)
+|++||++||||+||||||||+|+|+|+|+|++|+|++||.|+.++++.++|++||||+||+.||+|||+|||++++ ++
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~ 574 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEA 574 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 000751 412 TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491 (1303)
Q Consensus 412 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~ 491 (1303)
++|++.+||+.+++|+||.++|.||+|.|||+|.+|||||||||+|||||+++|+||||||||||||++||+.|.+.|.+
T Consensus 575 ~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654 (709)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHH
Q 000751 492 LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (1303)
Q Consensus 492 ~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 545 (1303)
...|+|+|+||||++++++||+|+|||+|+|+++|+|+||++.+|.|++++..|
T Consensus 655 ~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 655 ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999998754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-84 Score=811.77 Aligned_cols=552 Identities=33% Similarity=0.532 Sum_probs=482.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 729 YAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVR 808 (1303)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 808 (1303)
.+.++.++..+...+....+++++.+++.... .......+...++++.++..++.++..++..+.+.+...++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLA------DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666677777777776551 122334455555666667777888888888888899999999
Q ss_pred HHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 809 RMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILS 888 (1303)
Q Consensus 809 ~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~ 888 (1303)
.++|+++++.|++||++ +++|++++|+++|++.++..+......+...+..+++.+++++.++|.+++++++..|++.
T Consensus 89 ~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 166 (567)
T COG1132 89 RDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA 166 (567)
T ss_pred HHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999986 6789999999999999999999886666667888888999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 889 LSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLL 968 (1303)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 968 (1303)
+.........++..+..++...+.+..+.|.++|+++||+|+.++...+++.+..+...+...+.....+....+...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766665557778888888889999999999999999999999999999998888888777776777777777888888
Q ss_pred HHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 000751 969 FACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPP 1048 (1303)
Q Consensus 969 ~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 1048 (1303)
.+..+.+++++...+..+.+++|.+...+.+......++.........+.....+++|++++++.++.....+.. ..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~ 323 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LK 323 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CC
Confidence 899999999999999999999998877777777777777777777788888999999999999875543222111 22
Q ss_pred CCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh
Q 000751 1049 NVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL 1128 (1303)
Q Consensus 1049 ~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l 1128 (1303)
...|+|+|+||+|+|+++ .++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|+|||+||++++.++|
T Consensus 324 ~~~~~I~f~~vsf~y~~~--~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 324 DTIGSIEFENVSFSYPGK--KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCeEEEEEEEEEcCCC--CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 345789999999999852 359999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHh
Q 000751 1129 RNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1129 R~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAll 1208 (1303)
|++|++|||||+||+|||+|||.+|+++++|||+++||+.++++|||.++|+||||.|||+|.+||||||||||||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHH
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288 (1303)
Q Consensus 1209 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l 1288 (1303)
++|+|||||||||+||++||+.|++++++..+ +||+|+||||++++++||+|+|||+|+|+|.|+|+||++++|.|++|
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~-~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhc-CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHH
Confidence 99999999999999999999999999998764 58999999999999999999999999999999999999999999999
Q ss_pred Hhhhhh
Q 000751 1289 MQPHYG 1294 (1303)
Q Consensus 1289 ~~~~~~ 1294 (1303)
|+.|..
T Consensus 561 ~~~~~~ 566 (567)
T COG1132 561 YQAQGG 566 (567)
T ss_pred HHHhhc
Confidence 998754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-84 Score=815.52 Aligned_cols=569 Identities=20% Similarity=0.273 Sum_probs=472.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFY 795 (1303)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 795 (1303)
+++++.+.++.++.+++++++.++...+.++.+++++.+++.....+. .......+..+++++.++..++.+++.++
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENI---PREALLPPFILLILLFVLRALLAWLRERV 86 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777888888888888888888886542110 01123334455556666778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 796 FGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (1303)
Q Consensus 796 ~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~ 875 (1303)
..+.+.++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus 87 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 87 GFKAGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999974 689999999999999999999999999898888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 876 LALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGM 955 (1303)
Q Consensus 876 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1303)
+++++++++|+.++......+..++..++.++...+....+.|.++|+++||+|++|+.+.++|++..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877766666666667777778888888999999999999999999999999999998888877766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHH---HHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000751 956 AIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTA---LKEY------MVFSFATFALVEPFGLAPYILKRRKSLIS 1026 (1303)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1026 (1303)
.......+...+..+..++++++++..+. |.+++|.+ +..+ ++......++.........+.++..++.|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555445455554443 66666643 1111 12222334455555666677888899999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccc
Q 000751 1027 VFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1027 i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~ 1106 (1303)
+.++++.+++.++.. ....+....+.|+|+||+|.|+++ .++|+|+||+|+|||++||||+||||||||+++|+|+|
T Consensus 324 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999987654221111 111111123579999999988643 36999999999999999999999999999999999999
Q ss_pred cCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCccccc
Q 000751 1107 DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHV 1186 (1303)
Q Consensus 1107 ~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~v 1186 (1303)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+|+|+++|+|+++|++.|++++||+++|+||||.|
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeC
Q 000751 1187 GMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266 (1303)
Q Consensus 1187 ge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~ 1266 (1303)
||+|.+||||||||||||||++++|+||||||||||||++||+.|+++|++..+ ++|+|+||||++++++||+|+||++
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecChHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999999998754 6999999999999999999999999
Q ss_pred CEEEEecChHHHhhcCchhHHHHhhhhhc
Q 000751 1267 GRIVEEGTHDSLLAKNGLYVRLMQPHYGK 1295 (1303)
Q Consensus 1267 G~Ive~Gt~~eLl~~~g~y~~l~~~~~~~ 1295 (1303)
|+|+|.|+|+||++++|.|++++..|..+
T Consensus 559 G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 559 GQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred CeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 99999999999999999999999987654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-85 Score=821.50 Aligned_cols=503 Identities=22% Similarity=0.239 Sum_probs=445.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000751 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (1303)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~ 118 (1303)
+.++..++.+++.++....+.++..++|.++|+|++++|+.+|+++ ++|++++|+++|++.+++++.+.++.++.+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~ 150 (588)
T PRK11174 72 LFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLV 150 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677788888888999999999999999999999999985 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 000751 119 FFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYAT 198 (1303)
Q Consensus 119 ~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 198 (1303)
+++.++++++++|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+
T Consensus 151 ~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 230 (588)
T PRK11174 151 PLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRS 230 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999998888888889998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH---------HHHHHHHHHHHHHHHHHHH
Q 000751 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEI---------VTALFAVILSGLGLNQAAT 269 (1303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l---------~~~~~~~~~~~~~l~~~~~ 269 (1303)
..++..+...+.........++..++..+..+++++++++.+ .|.+++|.+ ++++.+...+..|+..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~ 309 (588)
T PRK11174 231 ASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGT 309 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999888887776666665555555555555545545555544 378888764 1222344456689999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC-CCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCC
Q 000751 270 NFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGS 348 (1303)
Q Consensus 270 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGs 348 (1303)
.+..+++++.+.+|+.++++.+++.........+ ...+.|+|+||+|.|++ ++++|+|+||+|+||+++||||||||
T Consensus 310 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGs 387 (588)
T PRK11174 310 FYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGA 387 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCC
Confidence 9999999999999999999876432211111111 12346999999988753 45799999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchH
Q 000751 349 GKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427 (1303)
Q Consensus 349 GKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~ 427 (1303)
|||||+++|+|+| |++|+|.+||+|+++++.+++|++|+||+|+|+||++||+|||++|+ +++++++++|++.|++++
T Consensus 388 GKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~ 466 (588)
T PRK11174 388 GKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSE 466 (588)
T ss_pred CHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999996 799999999999999999
Q ss_pred HHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Q 000751 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (1303)
Q Consensus 428 ~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~ 507 (1303)
||++||+||||.|||+|.+||||||||||||||++++|+|||||||||+||+++|+.++++|+++.+++|+|+||||+++
T Consensus 467 ~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~ 546 (588)
T PRK11174 467 FLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546 (588)
T ss_pred HHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred ccccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHHH
Q 000751 508 IRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (1303)
Q Consensus 508 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 546 (1303)
++.||+|++|++|+|++.|+|+||+++++.|+++++.|.
T Consensus 547 i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred HHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhh
Confidence 999999999999999999999999999999999998765
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-84 Score=808.89 Aligned_cols=508 Identities=35% Similarity=0.511 Sum_probs=468.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000751 35 YIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH 114 (1303)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~ 114 (1303)
+++++.++..++.++..++..+.+.++..++|.+++++++++|+.+|+++ ++|++++|+++|++.+++.+.+....+..
T Consensus 57 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~ 135 (567)
T COG1132 57 LLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFT 135 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHH
Confidence 33344445666777777777888899999999999999999999999995 88999999999999999999988666666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHH
Q 000751 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKY 194 (1303)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 194 (1303)
.+..+++.+++++..+|.+++++++..|++.++..++.++.++..++.++..++.++.+.|.++|++++|+|+.++.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~ 215 (567)
T COG1132 136 SILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELK 215 (567)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHH
Confidence 78889999999999999999999999999999888888877889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 195 SYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSF 274 (1303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~ 274 (1303)
++.+..+...+...+.....+...++..++..+..++++++|.+++.++.+++|.+++++.+...+..|+..+...+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 295 (567)
T COG1132 216 RFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLL 295 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887877888777788888888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHH
Q 000751 275 DQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSII 354 (1303)
Q Consensus 275 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~ 354 (1303)
+.+..+.+|++++++.+++..+.... .....++|+|+||+|+|++ ++++|+|+||++++||++|||||||||||||+
T Consensus 296 ~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~ 372 (567)
T COG1132 296 QRASAAAERLFELLDEEPEVEDPPDP-LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLI 372 (567)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCC-CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999999999986543222211 2234567999999999963 56899999999999999999999999999999
Q ss_pred HHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcc
Q 000751 355 PLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLE 433 (1303)
Q Consensus 355 ~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~ 433 (1303)
++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+||++||+|||.+|+ ++++|++++|++.+++++||+++|
T Consensus 373 ~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp 452 (567)
T COG1132 373 KLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLP 452 (567)
T ss_pred HHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999998 699999999999999999999999
Q ss_pred cccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCE
Q 000751 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY 513 (1303)
Q Consensus 434 ~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~ 513 (1303)
+||||.|||+|.+||||||||||||||+++||+|||||||||+||++||+.+++++.++.++||+|+||||++++++||+
T Consensus 453 ~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~ 532 (567)
T COG1132 453 DGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADR 532 (567)
T ss_pred ccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred EEEEeCceEeeccChHHHhhcChhHHHHHHHHH
Q 000751 514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (1303)
Q Consensus 514 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 546 (1303)
|+|||+|+|+|.|+|+||++++|.|+++++.|.
T Consensus 533 IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~ 565 (567)
T COG1132 533 IIVLDNGRIVERGTHEELLAKGGLYARLYQAQG 565 (567)
T ss_pred EEEEECCEEEEecCHHHHHHcCCHHHHHHHHhh
Confidence 999999999999999999999999999998764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-83 Score=817.75 Aligned_cols=565 Identities=30% Similarity=0.475 Sum_probs=493.7
Q ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 714 PSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQH 793 (1303)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 793 (1303)
+.+++++++.++.+..+...+++.++...+....+++.+.+++....... .........+++++.++..++.+++.
T Consensus 147 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~ 222 (711)
T TIGR00958 147 DLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG----PPALASAIFFMCLLSIASSVSAGLRG 222 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777888888888888887653321 11222334445555666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 794 FYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLE 873 (1303)
Q Consensus 794 ~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~ 873 (1303)
+++.+.+.++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++..++.+++.+++++.++
T Consensus 223 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s 300 (711)
T TIGR00958 223 GSFNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLS 300 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999975 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 000751 874 WRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLH 953 (1303)
Q Consensus 874 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1303)
|.+++++++.+|+..+......++.++..++.++...+.+..+.|.++|+++||+|+.|+++.++|.+..++..+...+.
T Consensus 301 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 380 (711)
T TIGR00958 301 PRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRK 380 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998988877777777777778888888888999999999999999999999999999999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q 000751 954 GMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDR 1033 (1303)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 1033 (1303)
....+....+...+..+..++++++|++++..|.+++|.++....+......++.........+.+...+.+|++++++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 460 (711)
T TIGR00958 381 ALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDR 460 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 66666666666667777778888999999999999999988877777777777777788888889999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEE
Q 000751 1034 VPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113 (1303)
Q Consensus 1034 ~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I 1113 (1303)
+++.++.. ...+.+..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 461 ~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 461 KPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred CCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 65432211 1112234578999999999987655679999999999999999999999999999999999999999999
Q ss_pred EECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCC
Q 000751 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDL 1193 (1303)
Q Consensus 1114 ~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~L 1193 (1303)
++||+|+++++.+++|++|+||||||++|+|||||||.++.++.+|++++++++.++++++|+++|+|+||.+||+|.+|
T Consensus 539 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 618 (711)
T TIGR00958 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618 (711)
T ss_pred EECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEec
Q 000751 1194 TPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1194 SgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~G 1273 (1303)
|||||||||||||++++|+|||||||||+||+++|+.+++ .. .. +++|+|+||||+++++.||+|+||++|+|+|+|
T Consensus 619 SGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~~-~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-SR-ASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-cc-CCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 9999999999999999999999999999999999999999 33 22 369999999999999999999999999999999
Q ss_pred ChHHHhhcCchhHHHH
Q 000751 1274 THDSLLAKNGLYVRLM 1289 (1303)
Q Consensus 1274 t~~eLl~~~g~y~~l~ 1289 (1303)
+|+||++++|.|++|+
T Consensus 696 t~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 696 THKQLMEDQGCYKHLV 711 (711)
T ss_pred CHHHHHhCCCchHhcC
Confidence 9999999999999874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-82 Score=808.01 Aligned_cols=553 Identities=25% Similarity=0.326 Sum_probs=483.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 726 EWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTE 805 (1303)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1303)
.++.+...++.+++...+....++++..+++...... .......++++++++.++..++.+++.++..+.+.++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (686)
T TIGR03797 134 ARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA----DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDA 209 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555556666666777777777665322 122334455666666777888889999999999999999
Q ss_pred HHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 806 RVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLP 885 (1303)
Q Consensus 806 ~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p 885 (1303)
++|.++|++++++|+.||+. .++|++++|+. |++.+++.+...+...+.+...+++.++++++++|.+++++++++|
T Consensus 210 ~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~ 286 (686)
T TIGR03797 210 SLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALAL 286 (686)
T ss_pred HHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999974 68899999997 7999999998888787888888888888999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 886 ILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQ 965 (1303)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1303)
++++...+..+..++..++..+...+....+.|.++|+++||+++.|+++.++|++...+..+...+..........+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (686)
T TIGR03797 287 VAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNA 366 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777788888888899999999999999999999999999999999988888888777777777777
Q ss_pred HHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 000751 966 FLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAV 1045 (1303)
Q Consensus 966 ~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 1045 (1303)
++..++.++++++|++++..|.+++|.+++..++......++.........+.....+++|+.++++.+++.+.. ..
T Consensus 367 ~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~ 443 (686)
T TIGR03797 367 VLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KT 443 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cC
Confidence 888888899999999999999999999988888888888888888888888899999999999998765432211 11
Q ss_pred CCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH
Q 000751 1046 KPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL 1125 (1303)
Q Consensus 1046 ~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~ 1125 (1303)
.+....|.|+|+||+|+|++.. +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.
T Consensus 444 ~~~~~~~~I~~~nvsf~Y~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 444 DPGKLSGAIEVDRVTFRYRPDG-PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV 522 (686)
T ss_pred CCCCCCceEEEEEEEEEcCCCC-ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH
Confidence 1222357899999999997442 469999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+++|++|+||||||++|+|||||||.+++| ++++++++|++.++++++|+++|+|+||.+||+|.+|||||||||+|||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred HHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchh
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLY 1285 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y 1285 (1303)
|++++|+|||||||||+||+++|+.+++.|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|+||++++|.|
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y 678 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLF 678 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence 999999999999999999999999999999875 48999999999999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q 000751 1286 VRLMQPHY 1293 (1303)
Q Consensus 1286 ~~l~~~~~ 1293 (1303)
++|+..|+
T Consensus 679 ~~l~~~q~ 686 (686)
T TIGR03797 679 AQLARRQL 686 (686)
T ss_pred HHHHHhcC
Confidence 99998663
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-83 Score=854.71 Aligned_cols=511 Identities=28% Similarity=0.466 Sum_probs=448.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhc-cCCchhHHHHHHhhHHHHHHHHHHHHH
Q 000751 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDT-YGNNGDIVSQVLSDVLLIQSALSEKVG 110 (1303)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~~G~l~sr~~~Dv~~i~~~~~~~~~ 110 (1303)
+++++++++++.+++.+++.++...+++++..++|.++|++++++|+.||++ ..++|++++|+++|++.+++++...+.
T Consensus 868 ~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~ 947 (1466)
T PTZ00265 868 YSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIV 947 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777888899999999999999999999999999999999985 237899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHH
Q 000751 111 NYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLA-EN-----------------IQDAYAEAASI 172 (1303)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~ 172 (1303)
.++..+++++++++++++++|.++++++++. +++...+.++.+... ++ .++..++.+..
T Consensus 948 ~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1466)
T PTZ00265 948 IFTHFIVLFLVSMVMSFYFCPIVAAVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFL 1024 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHH
Confidence 9999999999999999999999988765433 333333333332211 11 12335677889
Q ss_pred HHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHH
Q 000751 173 AEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVT 252 (1303)
Q Consensus 173 ~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~ 252 (1303)
++|.++|+++||+|+.|+.+.++|.+..+...+...+.....++..++..++..+..++++|+|++++.+|.+++|++++
T Consensus 1025 ~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~ 1104 (1466)
T PTZ00265 1025 IQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMK 1104 (1466)
T ss_pred HHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999888888888888888888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--CCCCC---CCCCCccEEEEEEEEEcCCCCCCCcc
Q 000751 253 ALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTN--YDGNT---LPSVHGNIEFRNVYFSYLSRPEIPIL 327 (1303)
Q Consensus 253 ~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~---~~~~~~~i~~~~v~f~y~~~~~~~~l 327 (1303)
++.+++....++..+...+..+++++++++|++++++.+++.+. ..+.. .+...+.|+|+||+|+||++++.++|
T Consensus 1105 ~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL 1184 (1466)
T PTZ00265 1105 SLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIY 1184 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccc
Confidence 88776666667888888999999999999999999987643211 11111 11234679999999999865566899
Q ss_pred cceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC--------------------------------------------
Q 000751 328 SGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-------------------------------------------- 363 (1303)
Q Consensus 328 ~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-------------------------------------------- 363 (1303)
+|+||+|++|+++|||||||||||||++||+|+|+|
T Consensus 1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 (1466)
T PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264 (1466)
T ss_pred cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999
Q ss_pred ----------CCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhc
Q 000751 364 ----------TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSL 432 (1303)
Q Consensus 364 ----------~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l 432 (1303)
++|+|++||+|+++++.+++|++||||+|+|+||++||+|||+||+ +++++++++|++.+++++||.+|
T Consensus 1265 ~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~L 1344 (1466)
T PTZ00265 1265 GSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESL 1344 (1466)
T ss_pred ccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 6999999999999999999999999999999999999999999996 79999999999999999999999
Q ss_pred ccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccc
Q 000751 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN 510 (1303)
Q Consensus 433 ~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~ 510 (1303)
|+||||.|||+|.+|||||||||||||||+++|+||||||||||||+++|+.|+++|.+.. +++|+|+||||+++++.
T Consensus 1345 P~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~ 1424 (1466)
T PTZ00265 1345 PNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR 1424 (1466)
T ss_pred ccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999884 69999999999999999
Q ss_pred cCEEEEEeC----ceEe-eccChHHHhh-cChhHHHHHHHH
Q 000751 511 ADYIAVMDE----GRLF-EMGTHDELLA-TGDLYAELLKCE 545 (1303)
Q Consensus 511 ~d~i~~l~~----G~i~-~~g~~~~l~~-~~~~~~~~~~~~ 545 (1303)
||+|+||++ |+++ |+|+|+||++ ++|.|+++++.+
T Consensus 1425 aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1425 SDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 999999999 9955 8999999998 589999998754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=810.58 Aligned_cols=501 Identities=33% Similarity=0.470 Sum_probs=457.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000751 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (1303)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~ 117 (1303)
++.++..++.+++.++....+.++..++|.++|++++++|+.+|++. ++|++++|+++|++.+++.+.+.+..++.+++
T Consensus 209 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~ 287 (711)
T TIGR00958 209 LLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLV 287 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556677777888888999999999999999999999999985 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 000751 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (1303)
Q Consensus 118 ~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 197 (1303)
.+++.++++++++|.+++++++..|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.
T Consensus 288 ~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~ 367 (711)
T TIGR00958 288 MLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFK 367 (711)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHH
Confidence 99999999999999999999999999998989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (1303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (1303)
+..++..+...+.....+....+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..+...+..++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~ 447 (711)
T TIGR00958 368 EALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQA 447 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777766666655555556666667778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHH
Q 000751 278 RIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357 (1303)
Q Consensus 278 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll 357 (1303)
+.+.+|+.++++.+++..+.....+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|
T Consensus 448 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL 527 (711)
T TIGR00958 448 VGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL 527 (711)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999876543221111112234679999999999865556899999999999999999999999999999999
Q ss_pred hccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhccccc
Q 000751 358 ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGY 436 (1303)
Q Consensus 358 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~ 436 (1303)
+|+|+|++|+|.+||+|+++++.+++|++|+||+|||++|++||+|||.+|. ++++++++++++.++++++++++|+|+
T Consensus 528 ~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~Gl 607 (711)
T TIGR00958 528 QNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGY 607 (711)
T ss_pred HhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999999997 789999999999999999999999999
Q ss_pred CccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEE
Q 000751 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (1303)
Q Consensus 437 ~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~ 516 (1303)
||.+||+|.+||||||||||||||++++|+|||||||||+||+++|+.+++ ....+++|+|+||||+++++.||+|++
T Consensus 608 dT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~Iiv 685 (711)
T TIGR00958 608 DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILV 685 (711)
T ss_pred CCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999999998 334578999999999999999999999
Q ss_pred EeCceEeeccChHHHhhcChhHHHH
Q 000751 517 MDEGRLFEMGTHDELLATGDLYAEL 541 (1303)
Q Consensus 517 l~~G~i~~~g~~~~l~~~~~~~~~~ 541 (1303)
|++|+|++.|+|+||+++++.|+++
T Consensus 686 L~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 686 LKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred EECCEEEEeeCHHHHHhCCCchHhc
Confidence 9999999999999999999999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-82 Score=730.95 Aligned_cols=512 Identities=26% Similarity=0.306 Sum_probs=464.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHH
Q 000751 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGN 111 (1303)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~ 111 (1303)
+...++++.+...++.+.+.......+.++...+|+.+++++.++++.+-.+ .++|+..+.+.+.+|.++.++...+|.
T Consensus 42 ~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 42 LLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455666777777777778899999999999999999999999988 489999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHH
Q 000751 112 YIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETL 191 (1303)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 191 (1303)
+....+.+++.++.+|+++|.-+++++++.|++.+++.++++..++..+++...+..+++.+.|.++|+.|+|.|+..+.
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~ 200 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEA 200 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 192 AKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTH-NKAHGGEIVTALFAVILSGLGLNQAATN 270 (1303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~-g~~~~g~l~~~~~~~~~~~~~l~~~~~~ 270 (1303)
..++..+..++.++..++.-++.-.......++++++.+++..+.+..... |+++....+.++...--++.|++.+...
T Consensus 201 ~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~ 280 (559)
T COG4988 201 TEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSF 280 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999998888777776667777888888887776655555566 8999888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCC-CC-CCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCC
Q 000751 271 FYSFDQGRIAAYRLYEMISRSSSTTNYDGN-TL-PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGS 348 (1303)
Q Consensus 271 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~-~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGs 348 (1303)
++.-..+.++.+.++.+++.|.+..+.... .. ......++++|++|+||+. +++++|+||++++|+++||||+|||
T Consensus 281 fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGa 358 (559)
T COG4988 281 FHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGA 358 (559)
T ss_pred HHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCC
Confidence 999999999999999999887543222211 11 1122345566999999742 3899999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchH
Q 000751 349 GKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427 (1303)
Q Consensus 349 GKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~ 427 (1303)
|||||+++|+|+++|++|+|.+||+++++++.+.||++++||+|+|+||++||||||++++ +++++++.++++.+++.+
T Consensus 359 GKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~ 438 (559)
T COG4988 359 GKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLE 438 (559)
T ss_pred CHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 799999999999999999
Q ss_pred HHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Q 000751 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (1303)
Q Consensus 428 ~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~ 507 (1303)
|+.. |+|+||.+||+|.+|||||+||+|||||++++++++|||||||+||.+||+.|.+.|.++.+++|+|+||||++.
T Consensus 439 ~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~ 517 (559)
T COG4988 439 FVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLED 517 (559)
T ss_pred hhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHHHh
Q 000751 508 IRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (1303)
Q Consensus 508 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 547 (1303)
+..||+|+|||+|++++.|+|++|.++++.|++++..|..
T Consensus 518 ~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 518 AADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred HhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987753
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-82 Score=807.24 Aligned_cols=525 Identities=26% Similarity=0.321 Sum_probs=471.2
Q ss_pred hHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHH
Q 000751 14 KFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQ 93 (1303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr 93 (1303)
.++|.++.... ...+..+++.++++.++.+++.+++.+.....+.++..++|.++|+|++++|+.+|+++ ++|++++|
T Consensus 161 ~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r 238 (686)
T TIGR03797 161 ILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASR 238 (686)
T ss_pred HHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHH
Confidence 44455543322 12222333334444555667788888888889999999999999999999999999985 88999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 94 VLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIA 173 (1303)
Q Consensus 94 ~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1303)
++ |++.+++++...+...+.++..+++.++++++++|.+++++++.+|+++++..++.++.++..++.++..++..+.+
T Consensus 239 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (686)
T TIGR03797 239 AM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLT 317 (686)
T ss_pred Hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 79999999999888888888888889999999999999999999999888888899999999999999999999999
Q ss_pred HHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHH
Q 000751 174 EQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTA 253 (1303)
Q Consensus 174 ~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~ 253 (1303)
.|.++|+++||+++.|+.+.++|.+...+..+...+......+...+..++..+..++++|+|++++.+|.+|+|.++++
T Consensus 318 ~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~ 397 (686)
T TIGR03797 318 VQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAF 397 (686)
T ss_pred HHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999999999999999988888888888777777777777788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEE
Q 000751 254 LFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLT 333 (1303)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~ 333 (1303)
..+...+..|+.++...+..+++++.+.+|+.++++.+++..... .......+.|+|+||+|+|++. ++++|+|+||+
T Consensus 398 ~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~ 475 (686)
T TIGR03797 398 NTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQ 475 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEE
Confidence 999999999999999999999999999999999998765432111 1112234679999999999643 46799999999
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCH
Q 000751 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATL 413 (1303)
Q Consensus 334 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~ 413 (1303)
|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||||+|||++|+|||+|||.+++++++
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~ 555 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTL 555 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 000751 414 DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493 (1303)
Q Consensus 414 ~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~ 493 (1303)
++++++++.|+++++++++|+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.++++
T Consensus 556 e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~- 634 (686)
T TIGR03797 556 DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL- 634 (686)
T ss_pred HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHH
Q 000751 494 LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (1303)
Q Consensus 494 ~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 545 (1303)
++|+|+||||+++++.||+|++|++|+|++.|+|+||+++++.|+++++.|
T Consensus 635 -~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 635 -KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred -CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999998754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-81 Score=725.48 Aligned_cols=549 Identities=25% Similarity=0.343 Sum_probs=478.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 736 GAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAM 815 (1303)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~i 815 (1303)
...+.++......+++...++..+... .......++..++++.++..++.+.+.....+.+.++...+|+++++++
T Consensus 8 l~~l~~i~~i~qa~llA~~l~~l~~~~----~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 8 LAVLSGIAIIAQAALLADILTKLIEGQ----LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666777666665432 1334455667777778888899999999999999999999999999999
Q ss_pred HhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 816 LRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQK 895 (1303)
Q Consensus 816 l~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~ 895 (1303)
.+.++.|-+. .++|+..+.+...++.++.++...++....+.+..++.++.+++++|..+++++.++|++++++++..
T Consensus 84 ~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg 161 (559)
T COG4988 84 AKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVG 161 (559)
T ss_pred HhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998764 68899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 896 LWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALL 975 (1303)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1303)
...+..+++........+.++.|.++|+.|+|.|+..+...++..+...+..+..+......-....+..++.++..+++
T Consensus 162 ~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlv 241 (559)
T COG4988 162 LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALV 241 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888999999999999999999999999999998888888888877766665556667788888888888
Q ss_pred HHHHhHHhhc-CccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccE
Q 000751 976 LWYTGKSVRD-GYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSI 1054 (1303)
Q Consensus 976 ~~~~~~~v~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I 1054 (1303)
.++.+..... |.+++...+.+++..--...++-..-+.......+..+.+.++.+.+.++...+.............+|
T Consensus 242 Av~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei 321 (559)
T COG4988 242 AVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEI 321 (559)
T ss_pred HHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCcee
Confidence 8888887777 899988777666555555555555555555666677888888888876544322221111111223456
Q ss_pred EEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEE
Q 000751 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGL 1134 (1303)
Q Consensus 1055 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 1134 (1303)
+++|++|+||+.+ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.||++++|
T Consensus 322 ~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 322 SLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 6779999998764 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000751 1135 VQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL 1214 (1303)
Q Consensus 1135 VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~IL 1214 (1303)
|||+|+||+|||||||.+++++.+|++++++++.+++.+|+.. |+|+||.+||+|.+|||||+||++||||++++++++
T Consensus 400 v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred eCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHhhhhh
Q 000751 1215 LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYG 1294 (1303)
Q Consensus 1215 lLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~~~~~ 1294 (1303)
|||||||+||.+||+.|++.|.+.+++ +|||+||||+..+++||+|+|||+|+++|+|+|++|.+++|.|++|+.+|.+
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 999999999999999999999998774 9999999999999999999999999999999999999999999999998876
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-81 Score=805.39 Aligned_cols=563 Identities=23% Similarity=0.362 Sum_probs=489.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFY 795 (1303)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 795 (1303)
+++++...++.+..+...++.+++..++....++++..+++....... ......++..++++.++..++.+++.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM----MGTLGIISIGLIIAYIIQQILSYIQIFL 219 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555666666666667777888888887654321 1223334445555666677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 796 FGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (1303)
Q Consensus 796 ~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~ 875 (1303)
..+.+.++..++|.++|++++++|+.||++ .++|++++|++ |.+.+.+.+.......+.+++.+++.++++++++|+
T Consensus 220 ~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 220 LNVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999975 68999999998 899999988888877788888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 876 LALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGM 955 (1303)
Q Consensus 876 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1303)
+++++++.+|++++...+..+..++..++..+...+....+.|+++|+++||+++.|+.+.++|.+...+..+..++...
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887777777778888888888999999999999999999999999999999999888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC
Q 000751 956 AIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVP 1035 (1303)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1035 (1303)
..+....+..++..++.++++++|++++..|.+++|.+++...+......++.........+..+..+.+|+.++++.++
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 456 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS 456 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77666677777777888889999999999999999999988888888888888888888889999999999999987654
Q ss_pred CCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEE
Q 000751 1036 KIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLL 1115 (1303)
Q Consensus 1036 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~i 1115 (1303)
+.+... .....+...|.|+|+||+|+|+++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 457 e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 457 EFINKK-KRTELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccccc-cccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 332111 111122345789999999999743 36999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcC-CCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCC
Q 000751 1116 DGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA-RHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194 (1303)
Q Consensus 1116 dG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g-~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1194 (1303)
||+|+++++.+++|++|+||||||+||+|||||||.++ .+++++++++++++.++++++|.++|+||||.+||+|.+||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999998 57789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecC
Q 000751 1195 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1195 gGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt 1274 (1303)
|||||||+||||++++|+|||||||||+||+++|+.+++.|++. + ++|+|+||||+++++.||+|+||++|+++|.|+
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~-~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-Q-DKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-c-CCEEEEEecchHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999874 4 699999999999999999999999999999999
Q ss_pred hHHHhhcCchhHHHHh
Q 000751 1275 HDSLLAKNGLYVRLMQ 1290 (1303)
Q Consensus 1275 ~~eLl~~~g~y~~l~~ 1290 (1303)
|+||++++|.|++|++
T Consensus 692 ~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 692 HDELLDRNGFYASLIH 707 (708)
T ss_pred HHHHHhcCCcHHHHhh
Confidence 9999999999999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-81 Score=804.96 Aligned_cols=561 Identities=24% Similarity=0.338 Sum_probs=484.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 718 RLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFG 797 (1303)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 797 (1303)
.++...++.+..+...++++++..++..+.+++...+++....... ......++++++++.++..++.+++.++..
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR----QDWLRPLLLGMGLTALLQGVLTWLQLYYLR 219 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555666777777776543221 112333455555666777888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 798 IMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLA 877 (1303)
Q Consensus 798 ~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~ 877 (1303)
..+.++..++|.++|+++++.|++||+. .++|++++|++.| +.+++++...+...+.+++.+++.++++++++|.++
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 296 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLT 296 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 6899999999988 679999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 878 LVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAI 957 (1303)
Q Consensus 878 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1303)
+++++.+|+.++......+...+..++..+...+....+.|.++|+++||+++.|+.+.++|.+...+..+...+.....
T Consensus 297 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (710)
T TIGR03796 297 LIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLT 376 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777777776766777777788888999999999999999999999999999998888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 000751 958 GFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKI 1037 (1303)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 1037 (1303)
.....+..++..+..++++++|++++..|.+++|.+++...+......++.........+.....+++|+.++++.+++.
T Consensus 377 ~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 456 (710)
T TIGR03796 377 QILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDP 456 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777788888888899999999999999999999998888888888888888888888899999999999998765433
Q ss_pred CCCCC---C-CCCC-CCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccE
Q 000751 1038 DPDDS---S-AVKP-PNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112 (1303)
Q Consensus 1038 ~~~~~---~-~~~~-~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~ 1112 (1303)
+.... . ...+ +...|.|+|+||+|+|++.. +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 457 LLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLE-PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred ccccccccccccccCCCCCCeEEEEEEEEecCCCC-CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 21110 0 0111 22357899999999998542 46999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCC
Q 000751 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVD 1192 (1303)
Q Consensus 1113 I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~ 1192 (1303)
|++||+|+++++.+++|++|+||||||++|+|||||||.++.++++++++++|++.++++++|.++|+|+||.+||+|.+
T Consensus 536 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~ 615 (710)
T TIGR03796 536 ILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN 615 (710)
T ss_pred EEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEe
Q 000751 1193 LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE 1272 (1303)
Q Consensus 1193 LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~ 1272 (1303)
|||||||||+||||++++|+|||||||||+||++||+.+.+.|++ . ++|+|+||||++++..||+|+||++|+|+|.
T Consensus 616 LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~-~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--R-GCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--c-CCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999986 2 6999999999999999999999999999999
Q ss_pred cChHHHhhcCchhHHHH
Q 000751 1273 GTHDSLLAKNGLYVRLM 1289 (1303)
Q Consensus 1273 Gt~~eLl~~~g~y~~l~ 1289 (1303)
|+|+||++++|.|++|+
T Consensus 693 G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 693 GTHEELWAVGGAYARLI 709 (710)
T ss_pred cCHHHHHHcCCcHHHHh
Confidence 99999999999999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-81 Score=784.51 Aligned_cols=501 Identities=25% Similarity=0.299 Sum_probs=454.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000751 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (1303)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~ 118 (1303)
++++..++.+++.++.+..+.++..++|.++|+|++++|+.+|+++ ++|++++|+++|++.+++++.+.++.++.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~ 147 (574)
T PRK11160 69 AAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVV 147 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888889999999999999999999999999985 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 000751 119 FFSGLAIAFVNCWQIALITLCTGPFIVAA-GGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (1303)
Q Consensus 119 ~~~~~~~~~~~~~~l~l~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 197 (1303)
+++.++++++++|.+++++++++|+++++ ..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|.
T Consensus 148 ~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 227 (574)
T PRK11160 148 ILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLE 227 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHH
Confidence 99999999999999999988888876553 46667777888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 000751 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVIL-SGLGLNQAATNFYSFDQ 276 (1303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~-~~~~l~~~~~~~~~~~~ 276 (1303)
+..++..+...+.....+...++..++..+..++++++|++++ +|.+++|.+++++.+... ...|+..+...+..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~ 306 (574)
T PRK11160 228 QTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQ 306 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888887777777777777788889999884 899999999988766544 44678888888899999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHH
Q 000751 277 GRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (1303)
Q Consensus 277 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~l 356 (1303)
+..+++|+.++++.+++.............+.|+|+||+|+|++. ++++|+|+||++++||++|||||||||||||+++
T Consensus 307 ~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~l 385 (574)
T PRK11160 307 VIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385 (574)
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHH
Confidence 999999999999876543221111112234579999999999742 3579999999999999999999999999999999
Q ss_pred HhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccc
Q 000751 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKG 435 (1303)
Q Consensus 357 l~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g 435 (1303)
|+|+|+|++|+|.+||+|+++++.+++|++|+||+|+|++|++||+|||++++ ++++++++++++.+++++++++ |+|
T Consensus 386 l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~G 464 (574)
T PRK11160 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKG 464 (574)
T ss_pred HhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccc
Confidence 99999999999999999999999999999999999999999999999999997 7899999999999999999999 999
Q ss_pred cCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEE
Q 000751 436 YETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIA 515 (1303)
Q Consensus 436 ~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~ 515 (1303)
|||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+.+..+++|+|+||||+++++.||+|+
T Consensus 465 ldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~ 544 (574)
T PRK11160 465 LNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC 544 (574)
T ss_pred cCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred EEeCceEeeccChHHHhhcChhHHHHHH
Q 000751 516 VMDEGRLFEMGTHDELLATGDLYAELLK 543 (1303)
Q Consensus 516 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 543 (1303)
+|++|++++.|+|+||+++++.|+++++
T Consensus 545 ~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 9999999999999999999999999986
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-81 Score=803.77 Aligned_cols=501 Identities=26% Similarity=0.344 Sum_probs=459.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000751 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (1303)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~ 117 (1303)
++.+...++.++..++....+.++..++|.++|+|++++|+.+|+++ ++|++++|++ |++.+++++...+...+.+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~ 281 (708)
T TIGR01193 204 IAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMW 281 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 33444556778888888889999999999999999999999999985 8999999997 999999999999888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 000751 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (1303)
Q Consensus 118 ~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 197 (1303)
.+++.++++++++|.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|.
T Consensus 282 ~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 361 (708)
T TIGR01193 282 ILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKID 361 (708)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (1303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (1303)
+...+..+...+..........+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+.++...+..++.+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~ 441 (708)
T TIGR01193 362 SEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAA 441 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777777766666666666777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCC-CCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHH
Q 000751 278 RIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPL 356 (1303)
Q Consensus 278 ~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~l 356 (1303)
+.+.+|+.++++.+++...... ...+...+.|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||+++
T Consensus 442 ~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlkl 519 (708)
T TIGR01193 442 RVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKL 519 (708)
T ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHH
Confidence 9999999999987654322111 112234567999999999963 4579999999999999999999999999999999
Q ss_pred HhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcC-C-CCCHHHHHHHHHHhcchHHHHhccc
Q 000751 357 MERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG-R-DATLDQIEEAAKIAHAHTFISSLEK 434 (1303)
Q Consensus 357 l~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~-~-~~~~~~~~~~~~~~~~~~~i~~l~~ 434 (1303)
|+|+|+|++|+|++||+|+++++.+++|++|+||||+|+||++||+|||.+| + ++++++++++++.+++++++.++|+
T Consensus 520 L~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~ 599 (708)
T TIGR01193 520 LVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPL 599 (708)
T ss_pred HhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999998 3 7899999999999999999999999
Q ss_pred ccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEE
Q 000751 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI 514 (1303)
Q Consensus 435 g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i 514 (1303)
||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++. +++|+|+||||+++++.||+|
T Consensus 600 gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i 678 (708)
T TIGR01193 600 GYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKI 678 (708)
T ss_pred ccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEE
Confidence 9999999999999999999999999999999999999999999999999999999875 689999999999999999999
Q ss_pred EEEeCceEeeccChHHHhhcChhHHHHHH
Q 000751 515 AVMDEGRLFEMGTHDELLATGDLYAELLK 543 (1303)
Q Consensus 515 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 543 (1303)
++|++|++++.|+|+||+++++.|+++++
T Consensus 679 ~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred EEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 99999999999999999999999999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-80 Score=772.72 Aligned_cols=565 Identities=23% Similarity=0.328 Sum_probs=470.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 718 RLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFG 797 (1303)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 797 (1303)
+++++.++.++.+.++++..++..++....+++++.+++.................+...+.+++++..++.++..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666666666666677777777754321100000001111223344556677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 798 IMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLA 877 (1303)
Q Consensus 798 ~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~ 877 (1303)
+.+.++..++|.++|++++++|+.||++ .++|++++|+++|++.++.++...+..++..++.++++++++++++|.++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 878 LVALATLPILSLS-AIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMA 956 (1303)
Q Consensus 878 l~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1303)
+++++++|++.+. ..+..+..+...++.++...+.+..+.|.++|+++||+|+.++++.++|++..++..+...+....
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877766543 344445555666777788888889999999999999999999999999999999998888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHhcCC
Q 000751 957 IGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATF-ALVEPFGLAPYILKRRKSLISVFEIIDRVP 1035 (1303)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1035 (1303)
.+....+..++..+..++++++|+..+ .|.+++|.+++.+.+...... ++.........+.++..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 777777777777777888888888884 788888887765544433222 333344555677788899999999988655
Q ss_pred CCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEE
Q 000751 1036 KIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLL 1115 (1303)
Q Consensus 1036 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~i 1115 (1303)
+.+.... ..+....+.|+|+||+|+|++.. .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 323 ~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~~-~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 323 EVTFPTT--STAAADQVSLTLNNVSFTYPDQP-QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCCCcc--cCCCCCCCeEEEEEEEEECCCCC-CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 4221111 11112347899999999997542 36999999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCCh
Q 000751 1116 DGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1116 dG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
||+|+++++.+++|++|+||||||++|++||+|||.++.++.++++++++++.+++++++++ |+||||.+||+|.+|||
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999988999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecCh
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
|||||||||||++++|+|||||||||+||+++|+.+++.|++..+ ++|+|+||||++++..||+|++|++|+++|.|+|
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999999999999999998754 6999999999999999999999999999999999
Q ss_pred HHHhhcCchhHHHHh
Q 000751 1276 DSLLAKNGLYVRLMQ 1290 (1303)
Q Consensus 1276 ~eLl~~~g~y~~l~~ 1290 (1303)
+||++++|.|++||+
T Consensus 558 ~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 558 QELLAQQGRYYQLKQ 572 (574)
T ss_pred HHHHhcCcHHHHHHh
Confidence 999999999999986
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-81 Score=804.37 Aligned_cols=502 Identities=26% Similarity=0.314 Sum_probs=461.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000751 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (1303)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~ 115 (1303)
++++.++.+++.+++.++....+.++..++|.++|+|++++|+.+|+++ ++|++++|+++| +.+++++...+...+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~ 277 (710)
T TIGR03796 200 MGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALD 277 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHH
Confidence 3334455567778888888889999999999999999999999999985 899999999888 78999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHH
Q 000751 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (1303)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 195 (1303)
+..+++.++++++++|.+++++++.+|+++++..++.++..+..++.++..++..+.+.|.++|+++||++++|+.+.++
T Consensus 278 ~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~ 357 (710)
T TIGR03796 278 AVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSR 357 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFD 275 (1303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~ 275 (1303)
|.+...+..+...+......+...+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~ 437 (710)
T TIGR03796 358 WAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQ 437 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888877777777777777777888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCC------CCCC-CCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCC
Q 000751 276 QGRIAAYRLYEMISRSSSTTNYD------GNTL-PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGS 348 (1303)
Q Consensus 276 ~~~~a~~ri~~~l~~~~~~~~~~------~~~~-~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGs 348 (1303)
+++.+.+|+.++++.+++..... .... +...+.|+++||+|+|++. ++++|+|+||+|++||++||||||||
T Consensus 438 ~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGs 516 (710)
T TIGR03796 438 ELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGS 516 (710)
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCC
Confidence 99999999999998765432111 0111 2234679999999999742 46799999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchH
Q 000751 349 GKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHT 427 (1303)
Q Consensus 349 GKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~ 427 (1303)
|||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||+|+|++|++||+|||.+++ ++++++++++++.+++++
T Consensus 517 GKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~ 596 (710)
T TIGR03796 517 GKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHD 596 (710)
T ss_pred CHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 799999999999999999
Q ss_pred HHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Q 000751 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (1303)
Q Consensus 428 ~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~ 507 (1303)
++.++|+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+++ .++|+|+||||+++
T Consensus 597 ~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~ 674 (710)
T TIGR03796 597 VITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLST 674 (710)
T ss_pred HHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 58999999999999
Q ss_pred ccccCEEEEEeCceEeeccChHHHhhcChhHHHHH
Q 000751 508 IRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542 (1303)
Q Consensus 508 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 542 (1303)
++.||+|++|++|+|++.|+|+||+++++.|++++
T Consensus 675 i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 675 IRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred HHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 99999999999999999999999999999999886
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-81 Score=709.18 Aligned_cols=544 Identities=26% Similarity=0.393 Sum_probs=450.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 000751 742 SFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVG 821 (1303)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ 821 (1303)
.++...+.++...++..-..+..+.........+..|.++.+...++..++.+.+.++.+++.+..-.++|++.++++.+
T Consensus 44 ~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~ 123 (591)
T KOG0057|consen 44 ILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLS 123 (591)
T ss_pred HhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444455555555543211111122223334567788888889999999999999999999999999999999999999
Q ss_pred ccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 822 WFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAV-IIGMLLEWRLALVALATLPILSLSAIAQKLWLAG 900 (1303)
Q Consensus 822 ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~-~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~ 900 (1303)
||-. ..+|.+.+.+.+-...+..++...+..++..++.+.... .+..-.++..+++.+..+..+..+.+....+..+
T Consensus 124 ~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 124 FFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred hhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 9965 568899999888888888877777766666655554443 4445567777777777777777766677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000751 901 FSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTG 980 (1303)
Q Consensus 901 ~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1303)
+.+++..++..++..+.|.+.|.++||+||.|++..++|...+.++.+...+...+.++.......+.....+.+.+.+.
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999988888888887777777776677777888888
Q ss_pred HHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeE
Q 000751 981 KSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVD 1060 (1303)
Q Consensus 981 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vs 1060 (1303)
.-+.++.++++.+...+..+.+...++...-.....+.++...+..++...+...++... ..+.....|.|+|+||+
T Consensus 282 ~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~dV~ 358 (591)
T KOG0057|consen 282 NGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDDVH 358 (591)
T ss_pred hhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEeeE
Confidence 888899999998876665555555555444444444455555555555443322211110 11112245789999999
Q ss_pred EECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCc
Q 000751 1061 FCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPI 1140 (1303)
Q Consensus 1061 f~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~ 1140 (1303)
|.|++. +++|+|+||+|++||+|||||+|||||||++++|+||++ ++|+|+|||+||++++++.+|+.|||||||..
T Consensus 359 f~y~~k--~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~ 435 (591)
T KOG0057|consen 359 FSYGPK--RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSV 435 (591)
T ss_pred EEeCCC--CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCccc
Confidence 999744 359999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 000751 1141 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220 (1303)
Q Consensus 1141 LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaT 1220 (1303)
||++||.+||.||++.+++||+.++||.+++||.|.++|+||+|.|||+|..||||||||++||||++++|+|++|||||
T Consensus 436 LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaT 515 (591)
T KOG0057|consen 436 LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEAT 515 (591)
T ss_pred ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHhhhhh
Q 000751 1221 SSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYG 1294 (1303)
Q Consensus 1221 SaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~~~~~ 1294 (1303)
|+||.+||+.+.+++.... ++||+|+|+||++++++||+|++|++|+|.|.|+|+||+++.+.|+.+|..|..
T Consensus 516 S~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 516 SALDSETEREILDMIMDVM-SGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQTS 588 (591)
T ss_pred cccchhhHHHHHHHHHHhc-CCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhccccc
Confidence 9999999999999999864 479999999999999999999999999999999999999988899999986654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=772.49 Aligned_cols=561 Identities=29% Similarity=0.453 Sum_probs=477.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 724 FAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKM 803 (1303)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 803 (1303)
++.++.++...+..++..+.....++++..+++..+.... ......+.++++++.++..++.+++.++..+.+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 21 APFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD----RSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444445556666666665443210 111222233344466667788888888889999999
Q ss_pred HHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 804 TERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALAT 883 (1303)
Q Consensus 804 ~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~ 883 (1303)
...+|.++|+++++.|.++|+. .+.|++++|+++|++.+...+...+..++..++.+++.++++++++|.++++++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 174 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVI 174 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999974 67899999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 884 LPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGF 963 (1303)
Q Consensus 884 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1303)
+|+..+......+.+++..++.++...+....+.|.++|+++||+|+.++.+.++|++..++..+...+..........+
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T PRK11176 175 APIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPI 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777676667777777778888888899999999999999999999999999999999988888877777777777
Q ss_pred HHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 000751 964 SQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSS 1043 (1303)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 1043 (1303)
..++..++..+++++|+..+..|.+++|+++..+.++.....++.........+.+...+++|+.++++.+++.+. ..
T Consensus 255 ~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~-~~- 332 (582)
T PRK11176 255 IQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE-GK- 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC-CC-
Confidence 7777778888889999999999999999988777777666677777777777788888899999888875432211 11
Q ss_pred CCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC
Q 000751 1044 AVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY 1123 (1303)
Q Consensus 1044 ~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~ 1123 (1303)
...+...+.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 333 -~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~ 410 (582)
T PRK11176 333 -RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY 410 (582)
T ss_pred -cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc
Confidence 1112234679999999999754 24699999999999999999999999999999999999999999999999999999
Q ss_pred CHHHhhcceEEEccCCccCcccHHHHHHcCCCC-CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1124 NLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN-ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1124 ~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~-~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
+.+++|++|+||||||++|+|||||||.+++++ ++|++++++++.++++++++++|+|+||.+||+|.+|||||||||+
T Consensus 411 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~ 490 (582)
T PRK11176 411 TLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIA 490 (582)
T ss_pred CHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHH
Confidence 999999999999999999999999999998764 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
||||++++|+|||||||||+||++||+.+.+.|.+... ++|+|+||||+++++.||+|++|++|+|+|.|+|++|++++
T Consensus 491 LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~ 569 (582)
T PRK11176 491 IARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN 569 (582)
T ss_pred HHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999998754 69999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhhc
Q 000751 1283 GLYVRLMQPHYGK 1295 (1303)
Q Consensus 1283 g~y~~l~~~~~~~ 1295 (1303)
+.|++|+..|..|
T Consensus 570 ~~y~~l~~~~~~~ 582 (582)
T PRK11176 570 GVYAQLHKMQFGQ 582 (582)
T ss_pred ChHHHHHHHHhcC
Confidence 9999999977543
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-83 Score=704.81 Aligned_cols=506 Identities=27% Similarity=0.374 Sum_probs=424.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 785 TVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIV 864 (1303)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~ 864 (1303)
+.+++.++.++...+.+-..+++-.++|+|+.++++.|+-. ..+|+++.-+.+..+.+. ++...+..+...+.-+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 35666778888888888899999999999999999999864 467888888877777665 444433333334444444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Q 000751 865 AVI-IGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQL 943 (1303)
Q Consensus 865 ~~~-~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~ 943 (1303)
+++ ..+.++|+.+++++.++.+++...+...-+..++.|++.....+....-.+++-|.+|||-|++|++..++|++..
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 433 3345689999999988888877776666677777788888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000751 944 KKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKS 1023 (1303)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1023 (1303)
.++.+..++......+.......+..+..+..-.+.++.+..+..++|+++....++...-+++...-.....+++....
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99999888877766666666555555555555555667777888899887654444443333333333333456677788
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHh
Q 000751 1024 LISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIE 1103 (1303)
Q Consensus 1024 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~ 1103 (1303)
+++++++++++++..+ .+...+....+|.|+|+||+|.|.++ .|||+||||++.||+.||+|||||+||||++++|+
T Consensus 509 mEnmfdllkee~eVvd-~P~a~pl~~~~G~i~fsnvtF~Y~p~--k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVD-LPGAPPLKVTQGKIEFSNVTFAYDPG--KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHHHhhcCchhhc-CCCCCCccccCCeEEEEEeEEecCCC--CceeecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 9999999987665432 22222223467999999999999654 47999999999999999999999999999999999
Q ss_pred ccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcc
Q 000751 1104 RFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYD 1183 (1303)
Q Consensus 1104 rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gld 1183 (1303)
||||.++|+|+|||+||+++..++||++||+||||.+|||.||.+||.|++|.+++||+.+|+++|++||-|.++|+||+
T Consensus 586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEE
Q 000751 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVV 1263 (1303)
Q Consensus 1184 t~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iiv 1263 (1303)
|.|||+|-.||||||||+||||+++++|.|++|||||||||..||+.||.++.+++. ++|.|+|||||+|+.+||.|+|
T Consensus 666 t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnAD~ILv 744 (790)
T KOG0056|consen 666 TRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNADLILV 744 (790)
T ss_pred hhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecccEEEE
Confidence 999999999999999999999999999999999999999999999999999999876 6999999999999999999999
Q ss_pred EeCCEEEEecChHHHhhc-CchhHHHHhhhhhccc
Q 000751 1264 LNGGRIVEEGTHDSLLAK-NGLYVRLMQPHYGKGL 1297 (1303)
Q Consensus 1264 l~~G~Ive~Gt~~eLl~~-~g~y~~l~~~~~~~~~ 1297 (1303)
+++|+|+|.|+|+||+.+ +|.|++||+.|..++.
T Consensus 745 i~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g~ 779 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLKRDGGAYADMWQAQQAMGK 779 (790)
T ss_pred EeCCeEeecCcHHHHHhccCCcHHHHHHHHHhcCc
Confidence 999999999999999998 8899999987776543
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-83 Score=708.22 Aligned_cols=500 Identities=27% Similarity=0.375 Sum_probs=429.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 45 AAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLA 124 (1303)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~ 124 (1303)
++.-+++++|..+.+-..+++-..+|+|+.++++.|+-.+ ++|+++.-++...+.+. ++...+.++...+.-..++++
T Consensus 274 ~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 274 FLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred chhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh
Confidence 4455667778778888888999999999999999999884 89999988877666554 333333333333333333333
Q ss_pred HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHH
Q 000751 125 IA-FVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQAT 203 (1303)
Q Consensus 125 ~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 203 (1303)
.. ..++|+.+++++++..++..+...+..+..+..+++.....+..+...+++-+.++||-||+|+++.++|.++..++
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Y 431 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKY 431 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHH
Confidence 33 34799999999888777777666666666677777777777778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 204 LRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYR 283 (1303)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~r 283 (1303)
.+...+...-..+....-..+..++.+..-.+..|+|..+.+++|+.+.+..|++.+..|++-++..+..+|+...-+++
T Consensus 432 qk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEn 511 (790)
T KOG0056|consen 432 QKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMEN 511 (790)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHH
Confidence 88877765544444333334444444444445567778899999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCCCCCC-CCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC
Q 000751 284 LYEMISRSSSTTNYDGN-TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 284 i~~~l~~~~~~~~~~~~-~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
++++++++++..+.++. +.....|.|+|+||+|.|+ +++|+|+||||+++||+++|+|||||+||||++++|.|||+
T Consensus 512 mfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd 589 (790)
T KOG0056|consen 512 MFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD 589 (790)
T ss_pred HHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh
Confidence 99999988765443322 2223568899999999996 56899999999999999999999999999999999999999
Q ss_pred CCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCcccc
Q 000751 363 PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441 (1303)
Q Consensus 363 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg 441 (1303)
.++|.|.|||+||+++...++|++||+||||..|||+||..||.||+ ++++||+.+|+++|++||-|.++|+||+|.||
T Consensus 590 v~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 590 VNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred ccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCce
Q 000751 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (1303)
Q Consensus 442 ~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~ 521 (1303)
|+|..||||||||+||||+++|+|.|++|||+|||||..||+.|+.++.++..+||.|+|+||++++-+||.|+|+++|+
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGR 749 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccChHHHhhc-ChhHHHHHHHHHhc
Q 000751 522 LFEMGTHDELLAT-GDLYAELLKCEEAA 548 (1303)
Q Consensus 522 i~~~g~~~~l~~~-~~~~~~~~~~~~~~ 548 (1303)
|+|.|+|+||+++ +|.|++||+.|...
T Consensus 750 IvErG~HeeLl~rdgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 750 IVERGRHEELLKRDGGAYADMWQAQQAM 777 (790)
T ss_pred EeecCcHHHHHhccCCcHHHHHHHHHhc
Confidence 9999999999998 78999999877654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=785.25 Aligned_cols=550 Identities=24% Similarity=0.380 Sum_probs=476.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 721 ELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMG 800 (1303)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 800 (1303)
...++.+..+...++.+++..++....++++..+++....... ......+.++++++.++..++.+++.++..+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (694)
T TIGR03375 140 STLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA----FETLWVLAIGVALAIVFDFVLKTLRSYFLDVAG 215 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555566667777777776543221 122333444455556667788889999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 801 EKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVA 880 (1303)
Q Consensus 801 ~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~ 880 (1303)
.++..++|.++|+|++++|+.| + ..++|++++|+ +|++.+++.+...+...+.+++.+++.++++++++|.+++++
T Consensus 216 ~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 216 KKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999997 4 35889999999 799999999998888888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 881 LATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFA 960 (1303)
Q Consensus 881 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1303)
++.+|++++..+...+..++..++..+...+....+.|.++|+++||+|+.|+.+.++|++...+..+...+........
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777777777788888888899999999999999999999999999999999999888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000751 961 FGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPD 1040 (1303)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 1040 (1303)
..+...+..++.++++++|++++..|.+++|.++....+......++.........+.....+.+|+.++++.+++.++.
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 77888888888888999999999999999999998888888888888888888888899999999999998865432211
Q ss_pred CCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeC
Q 000751 1041 DSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL 1120 (1303)
Q Consensus 1041 ~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di 1120 (1303)
. .....+...|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+
T Consensus 452 ~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l 529 (694)
T TIGR03375 452 T-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529 (694)
T ss_pred C-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh
Confidence 1 111112245789999999999754 24699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1121 KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1121 ~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
++++.+++|++|+||||||++|+|||+|||.+++++++++++++|++.++++++|+++|+|+||.+||+|.+||||||||
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhh
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
|+||||++++|+|||||||||+||+++|+.|++.|++..+ ++|+|+||||+++++.||+|+||++|+|+|.|+|+||++
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999999999998765 699999999999999999999999999999999999987
Q ss_pred c
Q 000751 1281 K 1281 (1303)
Q Consensus 1281 ~ 1281 (1303)
+
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 5
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-79 Score=770.83 Aligned_cols=567 Identities=24% Similarity=0.331 Sum_probs=470.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFY 795 (1303)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 795 (1303)
+++++.+..+.++.+++..++.++...+....+++++.+++......... ......++++++++.++..++.+++.++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (592)
T PRK10790 11 LKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP--LGLVAGLAAAYVGLQLLAAGLHYAQSLL 88 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555666666667777777888888887654322111 1111223344555556677778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 796 FGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (1303)
Q Consensus 796 ~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~ 875 (1303)
....+.+...++|.++|+++++.|.+||+. .+.|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 89 FNRAAVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975 678999999999999999999999998899998888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 876 LALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGM 955 (1303)
Q Consensus 876 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1303)
+++++++++|+.++.........+...++.++...+....+.|.+.|+++||+|+.++++.+++.+..++..+...+...
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888776666666666666777777778888899999999999999999999999999888777766665554
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q 000751 956 AIGFA-FGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRV 1034 (1303)
Q Consensus 956 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1034 (1303)
..+.. ..+..++..+...+++++++. +..|.++++.++....+......++.........+.+...+++++.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44332 223333333332333333333 5789999999887777777777777888788888889999999999998754
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEE
Q 000751 1035 PKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114 (1303)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~ 1114 (1303)
++.. .. . ..+...+.|+|+||+|+|+++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 326 ~~~~-~~-~--~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 326 RQQY-GN-D--DRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CccC-CC-C--ccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 3211 11 1 112234689999999999753 3599999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCC
Q 000751 1115 LDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194 (1303)
Q Consensus 1115 idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1194 (1303)
+||+|+++++.+.+|++|+||||||++|+|||||||.+++ +++|++++++++.+|++++|+++|+|+||.+||+|.+||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999998 589999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecC
Q 000751 1195 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1195 gGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt 1274 (1303)
|||||||+||||++++|+|||||||||+||++||+.|++.|++... +||+|+||||+++++.||+|++|++|+++|.|+
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT 557 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999999998765 599999999999999999999999999999999
Q ss_pred hHHHhhcCchhHHHHhhhhhc
Q 000751 1275 HDSLLAKNGLYVRLMQPHYGK 1295 (1303)
Q Consensus 1275 ~~eLl~~~g~y~~l~~~~~~~ 1295 (1303)
|+||+++++.|+++++.|...
T Consensus 558 ~~~L~~~~~~y~~l~~~~~~~ 578 (592)
T PRK10790 558 HQQLLAAQGRYWQMYQLQLAG 578 (592)
T ss_pred HHHHHhCCCHHHHHHHHHhhh
Confidence 999999999999999977543
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-80 Score=775.82 Aligned_cols=505 Identities=30% Similarity=0.476 Sum_probs=463.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000751 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (1303)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~ 118 (1303)
++++..++.++..++....+.++..++|.+++++++++|..+|++. ++|++++|+++|++.+++.+.+.+..++.+++.
T Consensus 74 ~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 74 LMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777788999999999999999999999999985 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 000751 119 FFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYAT 198 (1303)
Q Consensus 119 ~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 198 (1303)
+++.++++++++|.+++++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 232 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHH
Confidence 99999999999999999999998988888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGR 278 (1303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 278 (1303)
..++..+...+......+...+..++..+..++++++|++.+.+|.+++|.+++++.+...+..|+..+...+..++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T PRK11176 233 VSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888777777777777777778888999999999999999999988888888999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 000751 279 IAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 279 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~ 358 (1303)
.+.+|+.++++.+++.... ....++..+.|+++||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+
T Consensus 313 ~~~~ri~~~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 313 AACQTLFAILDLEQEKDEG-KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT 390 (582)
T ss_pred HHHHHHHHHhcCCCcCCCC-CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999999999765432211 11122234579999999999742 467999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC--CCCHHHHHHHHHHhcchHHHHhccccc
Q 000751 359 RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGY 436 (1303)
Q Consensus 359 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~ 436 (1303)
|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||.+|+ ++++++++++++.++++++++++|+|+
T Consensus 391 gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gl 470 (582)
T PRK11176 391 RFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGL 470 (582)
T ss_pred hccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999986 479999999999999999999999999
Q ss_pred CccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEE
Q 000751 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (1303)
Q Consensus 437 ~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~ 516 (1303)
||.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++
T Consensus 471 dt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~ 550 (582)
T PRK11176 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILV 550 (582)
T ss_pred CceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EeCceEeeccChHHHhhcChhHHHHHHHHH
Q 000751 517 MDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (1303)
Q Consensus 517 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 546 (1303)
|++|+|++.|+|++|+++++.|+++++.|.
T Consensus 551 l~~g~i~e~g~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 551 VEDGEIVERGTHAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred EECCEEEEeCCHHHHHhCCChHHHHHHHHh
Confidence 999999999999999999999999998653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-80 Score=790.69 Aligned_cols=492 Identities=26% Similarity=0.381 Sum_probs=454.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000751 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (1303)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~ 118 (1303)
+.++..++.+++.++....+.++..++|.++|+|++++|+.+ ++ .++|++++|+ +|++.+++++...+...+.++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~ 272 (694)
T TIGR03375 196 AIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPF 272 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH
Confidence 344456777888888888999999999999999999999998 56 4889999998 89999999999988888888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 000751 119 FFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYAT 198 (1303)
Q Consensus 119 ~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 198 (1303)
+++.++++++++|.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+
T Consensus 273 ~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 352 (694)
T TIGR03375 273 ALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQ 352 (694)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGR 278 (1303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 278 (1303)
...+..+...+..........+..++..++.++++++|++++.+|.+|+|.+++++.+...+..|+..+...+..++.++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~ 432 (694)
T TIGR03375 353 TVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAK 432 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888777777777777888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCC-CCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHH
Q 000751 279 IAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357 (1303)
Q Consensus 279 ~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll 357 (1303)
.+.+|+.++++.+++...... ...+...+.|+|+||+|+|++ .++++|+|+||+|++||++||||+||||||||+++|
T Consensus 433 ~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL 511 (694)
T TIGR03375 433 TALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLL 511 (694)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 999999999987654322111 111223467999999999974 245799999999999999999999999999999999
Q ss_pred hccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhccccc
Q 000751 358 ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGY 436 (1303)
Q Consensus 358 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~ 436 (1303)
+|+|+|++|+|.+||+|+++++.+++|++|+||+|+|++|++||+|||.+++ ++++++++++++.+++++++.++|+||
T Consensus 512 ~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl 591 (694)
T TIGR03375 512 LGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGL 591 (694)
T ss_pred hcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccc
Confidence 9999999999999999999999999999999999999999999999999998 699999999999999999999999999
Q ss_pred CccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEE
Q 000751 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (1303)
Q Consensus 437 ~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~ 516 (1303)
||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+.+..+++|+|+||||+++++.||+|++
T Consensus 592 ~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iiv 671 (694)
T TIGR03375 592 DMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIV 671 (694)
T ss_pred cceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred EeCceEeeccChHHHhhc
Q 000751 517 MDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 517 l~~G~i~~~g~~~~l~~~ 534 (1303)
|++|+|++.|+|+||+++
T Consensus 672 l~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 672 MDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EeCCEEEeeCCHHHHHHH
Confidence 999999999999999764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=776.19 Aligned_cols=565 Identities=26% Similarity=0.379 Sum_probs=487.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 718 RLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFG 797 (1303)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 797 (1303)
+++...++.+..+...++.+++...+..+.++++..+++....... ......++++++++.++..++.+++.++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~----~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG----LSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444455555555556667777777776653221 123334455566666778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 798 IMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLA 877 (1303)
Q Consensus 798 ~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~ 877 (1303)
..+.++..++|.++|++++++|+.||+. .++|++++|+ +|++.+++++...+...+.+++.+++.++++++++|.++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 6899999999 699999999988777777777777777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 878 LVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAI 957 (1303)
Q Consensus 878 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1303)
+++++++|++++.........++..++..+...+.+..+.|+++|+++||+++.|+.+.++|++...+..+...+.....
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777776666666667777777888899999999999999999999999999999999888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 000751 958 GFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKI 1037 (1303)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 1037 (1303)
.....+..++..+..++++++|++++..|.+++|.+++...+......++.........+..+..+++|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 77777778888888889999999999999999999988888777788888888888888899999999999998765432
Q ss_pred CCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECC
Q 000751 1038 DPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG 1117 (1303)
Q Consensus 1038 ~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG 1117 (1303)
+.. .....+...|.|+|+||+|+|++.. +++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||
T Consensus 442 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~~-~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 442 RSA--GLAALPELRGAITFENIRFRYAPDS-PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred cCC--CCCCCCCCCCeEEEEEEEEEcCCCC-ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 211 1111223357899999999997542 3599999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1118 RDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1118 ~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
+|+++++.+++|++|+||||||++|+|||||||.++.+++++++++++++.++++++++++|+|+||.+|++|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHH
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||||+||||++++|+|||||||||+||+++|+.+.+.|++..+ ++|+|+||||+++++.||+|++|++|+|+|.|+|+|
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC-CCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998754 699999999999999999999999999999999999
Q ss_pred HhhcCchhHHHHhhhh
Q 000751 1278 LLAKNGLYVRLMQPHY 1293 (1303)
Q Consensus 1278 Ll~~~g~y~~l~~~~~ 1293 (1303)
|++++|.|++|+++|.
T Consensus 678 l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 678 LLALQGLYARLWQQQS 693 (694)
T ss_pred HHHcCChHHHHHHhhc
Confidence 9999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-79 Score=767.90 Aligned_cols=503 Identities=24% Similarity=0.318 Sum_probs=445.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000751 40 AGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATF 119 (1303)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~ 119 (1303)
.++..++.++..+.....+.++..++|.++|+++++.|+++|++. ++|++++|+++|++.+++++.+.+..++.++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~ 153 (592)
T PRK10790 75 QLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALI 153 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777788888999999999999999999999999985 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHH
Q 000751 120 FSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATS 199 (1303)
Q Consensus 120 ~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 199 (1303)
++.++++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+.
T Consensus 154 ~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~ 233 (592)
T PRK10790 154 GAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEA 233 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999888888888777778888888888888888899999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 200 LQATLRYGILISLVQGLG-LGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGR 278 (1303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 278 (1303)
.++..+...+.....++. ..+..++..+..++++++++. +.+|.+++|.+++++.+...+..|+..+...+..++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (592)
T PRK10790 234 SRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAV 312 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777666655554432 223333333222223333334 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHh
Q 000751 279 IAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 279 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~ 358 (1303)
.+++|+.++++.++++... ...+...+.|+|+||+|+|++ ++++|+|+||+|++||++||||+||||||||+++|+
T Consensus 313 ~s~~ri~~~l~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~ 388 (592)
T PRK10790 313 VAGERVFELMDGPRQQYGN--DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM 388 (592)
T ss_pred HHHHHHHHHhcCCCccCCC--CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999999999765432111 111223457999999999973 357999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCc
Q 000751 359 RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYET 438 (1303)
Q Consensus 359 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 438 (1303)
|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|+++++++++++++.++++++++++|+|+||
T Consensus 389 gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt 468 (592)
T PRK10790 389 GYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYT 468 (592)
T ss_pred cccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEe
Q 000751 439 QVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMD 518 (1303)
Q Consensus 439 ~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~ 518 (1303)
.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|+
T Consensus 469 ~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~ 548 (592)
T PRK10790 469 PLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLH 548 (592)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred CceEeeccChHHHhhcChhHHHHHHHHHhc
Q 000751 519 EGRLFEMGTHDELLATGDLYAELLKCEEAA 548 (1303)
Q Consensus 519 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 548 (1303)
+|++++.|+|+||+++++.|+++++.+...
T Consensus 549 ~G~i~~~G~~~~L~~~~~~y~~l~~~~~~~ 578 (592)
T PRK10790 549 RGQAVEQGTHQQLLAAQGRYWQMYQLQLAG 578 (592)
T ss_pred CCEEEEEcCHHHHHhCCCHHHHHHHHHhhh
Confidence 999999999999999999999999877543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-79 Score=780.76 Aligned_cols=528 Identities=29% Similarity=0.414 Sum_probs=474.3
Q ss_pred hHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHH
Q 000751 14 KFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQ 93 (1303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr 93 (1303)
.++|.++..... ..+..+++.++++.++.+++.+++.++....+.++..++|.++|+|++++|+.+|+++ ++|++++|
T Consensus 164 ~iid~v~~~~~~-~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~r 241 (694)
T TIGR01846 164 VVIDKVLVHRGL-STLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVAR 241 (694)
T ss_pred HHHHHhhccCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHH
Confidence 445555433221 2222333334444555667788888888889999999999999999999999999985 89999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 94 VLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIA 173 (1303)
Q Consensus 94 ~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1303)
+ +|++.+++++...+...+.++...++.++++++++|.+++++++.+|+++++..++.+..++..++.++..++.++.+
T Consensus 242 l-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (694)
T TIGR01846 242 V-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFL 320 (694)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 799999999998888888888888888889999999999999999999988888888888888888889999999999
Q ss_pred HHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHH
Q 000751 174 EQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTA 253 (1303)
Q Consensus 174 ~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~ 253 (1303)
.|.++|+++||+||.|+.+.++|.+..++..+...+......+...+..++..+..++++|+|++++.+|.+|+|.++++
T Consensus 321 ~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~ 400 (694)
T TIGR01846 321 VESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAF 400 (694)
T ss_pred HHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999999999999999999988888888888777777777777788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEE
Q 000751 254 LFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLT 333 (1303)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~ 333 (1303)
..+...+..|+..+...+..+++++.+.+|+.++++.+++.........+...+.|+|+||+|+|++. ++++|+|+||+
T Consensus 401 ~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~ 479 (694)
T TIGR01846 401 NMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLD 479 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEE
Confidence 99999999999999999999999999999999999876543221111122335679999999999642 45799999999
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCC
Q 000751 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DAT 412 (1303)
Q Consensus 334 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~ 412 (1303)
|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|++|++||+|||.+++ +++
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~ 559 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAP 559 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 789
Q ss_pred HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 000751 413 LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492 (1303)
Q Consensus 413 ~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~ 492 (1303)
+++++++++.+++++++.++|+|+||.+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|++.
T Consensus 560 ~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 560 FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHH
Q 000751 493 MLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (1303)
Q Consensus 493 ~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 545 (1303)
.+++|+|+||||+++++.||+|++|++|+|++.|+|++|+++++.|+++++.|
T Consensus 640 ~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 692 (694)
T TIGR01846 640 CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQ 692 (694)
T ss_pred hCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhh
Confidence 88999999999999999999999999999999999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-78 Score=754.21 Aligned_cols=506 Identities=25% Similarity=0.355 Sum_probs=457.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000751 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (1303)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~ 118 (1303)
+.++.+++.++..++....+.++..++|.++|++++++|+.+|+++ ++|++++|+++|++.++..+...+..++..++.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~ 123 (569)
T PRK10789 45 IAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVM 123 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777888999999999999999999999999985 889999999999999998888888888877666
Q ss_pred HHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 000751 119 FFSGLAIA-FVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (1303)
Q Consensus 119 ~~~~~~~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 197 (1303)
+++.++++ ++++|.+++++++++|+++++...+.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.
T Consensus 124 ~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~ 203 (569)
T PRK10789 124 GCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFA 203 (569)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHH
Confidence 66666655 58999999999999999988888888888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (1303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (1303)
+..++..+...+.....+....+...+..++.++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~ 283 (569)
T PRK10789 204 ADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERG 283 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777777766666666666677778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHH
Q 000751 278 RIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357 (1303)
Q Consensus 278 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll 357 (1303)
+.+.+|+.++++.+++.... ....+...+.|+++||+|+|+. +++++|+|+||++++|++++|+||||||||||+++|
T Consensus 284 ~~a~~ri~~ll~~~~~~~~~-~~~~~~~~~~I~~~~v~~~y~~-~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll 361 (569)
T PRK10789 284 SAAYSRIRAMLAEAPVVKDG-SEPVPEGRGELDVNIRQFTYPQ-TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361 (569)
T ss_pred HHHHHHHHHHHcCCCcccCC-CCCCCCCCCcEEEEEEEEECCC-CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999876432211 1112223457999999999974 245799999999999999999999999999999999
Q ss_pred hccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhccccc
Q 000751 358 ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGY 436 (1303)
Q Consensus 358 ~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~ 436 (1303)
+|+|+|++|+|.+||+++++++.+++|++|+||+|+|++|++|++|||.+++ ++++++++++++.+++++++.++|+|+
T Consensus 362 ~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl 441 (569)
T PRK10789 362 QRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGY 441 (569)
T ss_pred hcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcc
Confidence 9999999999999999999999999999999999999999999999999996 789999999999999999999999999
Q ss_pred CccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEE
Q 000751 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV 516 (1303)
Q Consensus 437 ~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~ 516 (1303)
||.+|++|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++
T Consensus 442 ~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~ 521 (569)
T PRK10789 442 DTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILV 521 (569)
T ss_pred cceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EeCceEeeccChHHHhhcChhHHHHHHHHHh
Q 000751 517 MDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (1303)
Q Consensus 517 l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 547 (1303)
|++|++++.|+|++++++++.|+++++.|..
T Consensus 522 l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 552 (569)
T PRK10789 522 MQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL 552 (569)
T ss_pred EeCCEEEEecCHHHHHHcCChHHHHHHHhhh
Confidence 9999999999999999999999999987654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=753.66 Aligned_cols=562 Identities=31% Similarity=0.462 Sum_probs=496.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 721 ELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMG 800 (1303)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 800 (1303)
...+..++.++++.+..++.+++.+..++++..+++..+... .......++++++++.++..++.+++.++..+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 7 SYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGR----DRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666667777777777778888887777654322 1122333344566677777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 801 EKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVA 880 (1303)
Q Consensus 801 ~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~ 880 (1303)
.++...+|..+++++++.|.++|++ .+.|++.+|+++|++.+++.+...+..++.+++.+++.++++++++|.+++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999975 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 881 LATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFA 960 (1303)
Q Consensus 881 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1303)
+++.|+.++......+..+...++.++...+....+.|.++|+++||+++.++++.++|++..++..+...+.....+..
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777777787888888889999999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000751 961 FGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPD 1040 (1303)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 1040 (1303)
..+...+..++.++++++|+..+..|.+++|.+++...++.....++.........+.+...+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 77778888888888999999999999999999998888888888888888888888999999999999988754432211
Q ss_pred CCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeC
Q 000751 1041 DSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL 1120 (1303)
Q Consensus 1041 ~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di 1120 (1303)
. ...+...+.|+++||+|+|+++. .++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 321 -~--~~~~~~~~~i~~~~v~f~y~~~~-~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 321 -T--RAIERARGDVEFRNVTFRYPGRD-RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred -C--CCCCCCCCeEEEEEEEEEcCCCC-CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 1 11112346799999999997643 4699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcceEEEccCCccCcccHHHHHHcCCC-CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1121 KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARH-NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1121 ~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~-~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
++++.+++|++++||||+|++|+|||||||.++.+ +.++++++++++.+++++++.++|+|+||.+||+|.+|||||||
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 99999999999999999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHh
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
|||||||++++|+|||||||||+||+++++.+.+.|++..+ ++|+|+||||++.+..||+|++|++|++++.|+|++|+
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999998755 69999999999999999999999999999999999999
Q ss_pred hcCchhHHHHhhhh
Q 000751 1280 AKNGLYVRLMQPHY 1293 (1303)
Q Consensus 1280 ~~~g~y~~l~~~~~ 1293 (1303)
++++.|++++..+.
T Consensus 556 ~~~~~~~~~~~~~~ 569 (571)
T TIGR02203 556 ARNGLYAQLHNMQF 569 (571)
T ss_pred HcCCHHHHHHHHhh
Confidence 99999999988664
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-78 Score=683.21 Aligned_cols=506 Identities=24% Similarity=0.343 Sum_probs=424.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHH
Q 000751 777 IIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFI 856 (1303)
Q Consensus 777 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i 856 (1303)
..=++++...+..|......+.+..++...+|.++|+++...+..-..+ -.+|+++||+..|++.+|+.+-..+..++
T Consensus 63 ~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r--~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~ 140 (573)
T COG4987 63 GVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR--YRSGDLLNRLVADVDALDNLYLRVIAPAV 140 (573)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh--cChHhHHHHHHhhHHHHhhHHHHHHhhHH
Confidence 3335677888888999999999999999999999999999988876654 56899999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 000751 857 QDSAAVIVAVIIGMLLEWRLALVALATLPIL-SLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKV 935 (1303)
Q Consensus 857 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~ 935 (1303)
..+...++..+...+++|.+++.+..++.+. ++.-.+..++-+++.+..........+.+.|.+.|....+.||+++.+
T Consensus 141 ~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~ 220 (573)
T COG4987 141 VALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAY 220 (573)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHH
Confidence 8888888888877788888877665444333 333344455556677777888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHH--hh
Q 000751 936 MELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPF--GL 1013 (1303)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 1013 (1303)
...+......+.+...+...+.++...+.+++..+..+..+.+.+-.+..|..+........ ...+..+....++ ..
T Consensus 221 ~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~l-l~~f~~~eaf~~L~~~A 299 (573)
T COG4987 221 RTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALAL-LVIFAALEAFEPLAPGA 299 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHH-HHHHHHHHHHhhhcchh
Confidence 99999999888888888888877777777666666655333333344445554432222111 1212222222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCC
Q 000751 1014 APYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGS 1093 (1303)
Q Consensus 1014 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGS 1093 (1303)
..+..+...++.|+.++.+.+++...+.+ .. +.... .++++||+|+||+.+ +++|+|+||++++||||||+|||||
T Consensus 300 ~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~-~~-~~~~~-~l~~~~vsF~y~~~~-~~~L~~~~l~l~~GEkvAIlG~SGs 375 (573)
T COG4987 300 FQHLGQVIASARRLNDILDQKPEVTFPDE-QT-ATTGQ-ALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGS 375 (573)
T ss_pred HHHhhHHHHHHHHHhhhccCCcccCCCcc-cc-CCccc-eeeeccceeecCCCc-cchhhccceeecCCCeEEEECCCCC
Confidence 35566777889999888887665443311 11 11112 799999999999764 4799999999999999999999999
Q ss_pred ChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHH
Q 000751 1094 GKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173 (1303)
Q Consensus 1094 GKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~ 1173 (1303)
||||++++|.|.|+|++|+|+++|.+++.++.+++|+.|++++|.++||++|+||||.+++|++||||+|++++++|+++
T Consensus 376 GKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~ 455 (573)
T COG4987 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEK 455 (573)
T ss_pred CHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCch
Q 000751 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAA 1253 (1303)
Q Consensus 1174 ~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ 1253 (1303)
++++.|+||+|.+||+|.+||||||||+||||+||++++++||||||.+||++||++|.+.+.+..+ |||+|+||||+.
T Consensus 456 l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~ 534 (573)
T COG4987 456 LLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR 534 (573)
T ss_pred HHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876 699999999999
Q ss_pred hHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHh
Q 000751 1254 MMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290 (1303)
Q Consensus 1254 ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~ 1290 (1303)
.++.||||+|||+|+++|+|+|.+|++++|.|+++++
T Consensus 535 ~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 535 GLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred cHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 9999999999999999999999999999999999986
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-78 Score=687.04 Aligned_cols=501 Identities=24% Similarity=0.291 Sum_probs=435.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000751 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (1303)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~ 118 (1303)
+++...+..|..++..+....++..++|.++|+++...++.-...+ ++||+++|+..||+.+++.+...+.+.+..++.
T Consensus 67 ~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 67 LAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 3455566677888888888999999999999999999999999886 889999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 000751 119 FFSGLAIAFVNCWQIALITLCTG-PFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (1303)
Q Consensus 119 ~~~~~~~~~~~~~~l~l~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 197 (1303)
..+..+.+-+++|.+++.+...+ .+++++..++.++-++..++..+..+.+.+.+.|.++|...++.||+++.+.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 88887777789999886554433 33444556677777777778888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000751 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCA-LQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA-TNFYSFD 275 (1303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~-~~~~~~~ 275 (1303)
+....+.+...+...+..+...+..++..+..+ .++|.+ ..+..|..+......+++.++....++..+. ..+....
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lg 304 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLG 304 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhh
Confidence 999999999999888888877777766665555 445544 3445666664444444444444445555555 6677889
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHH
Q 000751 276 QGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355 (1303)
Q Consensus 276 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ 355 (1303)
+...|+.|+.++++.+++...++.. .+..+..++++||||+||+ .+.++|+|+||++++||++||+|+||||||||++
T Consensus 305 q~~~Sa~Rl~~i~~q~~e~~~~~~~-~~~~~~~l~~~~vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllq 382 (573)
T COG4987 305 QVIASARRLNDILDQKPEVTFPDEQ-TATTGQALELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQ 382 (573)
T ss_pred HHHHHHHHHhhhccCCcccCCCccc-cCCccceeeeccceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHH
Confidence 9999999999999988765433111 1212227999999999985 3568999999999999999999999999999999
Q ss_pred HHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhccc
Q 000751 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEK 434 (1303)
Q Consensus 356 ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~ 434 (1303)
+|.|.|+|++|+|.++|.+++.++.+.+|+.|++++|.++||++|+|||+++++ +++||+++++++.+++++++++.|+
T Consensus 383 Ll~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~ 462 (573)
T COG4987 383 LLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPD 462 (573)
T ss_pred HHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChh
Confidence 999999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred ccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEE
Q 000751 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI 514 (1303)
Q Consensus 435 g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i 514 (1303)
|++|.+||.|.+||||||||+||||+|++|+|++||||||.+||++||+++.+.+.+..+|||+|+||||+..++.+|+|
T Consensus 463 gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drI 542 (573)
T COG4987 463 GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRI 542 (573)
T ss_pred hhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEeeccChHHHhhcChhHHHHHH
Q 000751 515 AVMDEGRLFEMGTHDELLATGDLYAELLK 543 (1303)
Q Consensus 515 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 543 (1303)
+|||+|+|+++|+|++|++++|.|+++++
T Consensus 543 ivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 543 IVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred EEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 99999999999999999999999999875
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-77 Score=749.40 Aligned_cols=569 Identities=25% Similarity=0.370 Sum_probs=474.4
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 715 SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHF 794 (1303)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 794 (1303)
.+|+++.+.++.+..+.+.++..++..++....++++..+++...... ....+.+.++++.++..+..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-------DIFPLLAAWAGFGLFNIIAGVLVAR 78 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555566666666667777777777888888887654321 1112223333333444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 795 YFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEW 874 (1303)
Q Consensus 795 ~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~ 874 (1303)
+..+...++..+++.++|+++++.|..+|++ .+.|++++|+++|++.+.+.+...+..++..++.+++.++++++++|
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (588)
T PRK13657 79 HADRLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW 156 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666777789999999999999974 68899999999999999988887887777777888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 000751 875 RLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHG 954 (1303)
Q Consensus 875 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1303)
.+++++++++|+..+......+..+...++..+...+....+.|.+.|+++||+|+.++.+.+++.+..++..+...+..
T Consensus 157 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
T PRK13657 157 RLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVL 236 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877666655555565666667777888899999999999999999999999999999988888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q 000751 955 MAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRV 1034 (1303)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1034 (1303)
...+....+.+++..+...+++++|++.+.+|.++++.++....++.....++.........+..+..++.++.++.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~ 316 (588)
T PRK13657 237 SWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAV 316 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 66666667777777788888899999999999999999888777777777777777777777888888888888887754
Q ss_pred CCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEE
Q 000751 1035 PKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114 (1303)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~ 1114 (1303)
++.+.. ......+...+.|+++||+|+||++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 317 ~~~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 317 PDVRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred cccCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 332111 1111112234679999999999753 2599999999999999999999999999999999999999999999
Q ss_pred ECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCC
Q 000751 1115 LDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194 (1303)
Q Consensus 1115 idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1194 (1303)
+||+|+++++.+.+|++|+||||||++|+|||||||.+++++.+|++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecC
Q 000751 1195 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1195 gGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt 1274 (1303)
||||||||||||++++|+|||||||||+||+++|+.+.+.|++..+ ++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~ 552 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998754 699999999999999999999999999999999
Q ss_pred hHHHhhcCchhHHHHhhhhhcc
Q 000751 1275 HDSLLAKNGLYVRLMQPHYGKG 1296 (1303)
Q Consensus 1275 ~~eLl~~~g~y~~l~~~~~~~~ 1296 (1303)
|++|+++++.|++++.++..+.
T Consensus 553 ~~~l~~~~~~y~~l~~~~~~~~ 574 (588)
T PRK13657 553 FDELVARGGRFAALLRAQGMLQ 574 (588)
T ss_pred HHHHHHCCChHHHHHHHhhccc
Confidence 9999999999999998765443
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=688.59 Aligned_cols=508 Identities=30% Similarity=0.380 Sum_probs=433.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHH
Q 000751 34 LYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYI 113 (1303)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~ 113 (1303)
+.+++..++..++..++.+.+..+.+++..+.-.++|+|+++++.++|.+. .+|++.+.+......|..++.-.+..++
T Consensus 78 ~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~ 156 (591)
T KOG0057|consen 78 AGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNII 156 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334445566778888888899999999999999999999999999999985 8899999999999999888776666666
Q ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHH
Q 000751 114 HNMATFFSGLAIA-FVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLA 192 (1303)
Q Consensus 114 ~~~~~~~~~~~~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 192 (1303)
..++-.......+ .-.....+++.+.....+..+.+....+..+..+++.++...+...+-|.+.+-.+||+||.|+++
T Consensus 157 p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~E 236 (591)
T KOG0057|consen 157 PTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYE 236 (591)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHH
Confidence 5544333332222 234455566665555555555555666666777778888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 193 KYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFY 272 (1303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~ 272 (1303)
.++|.....++.+.+.+.....++....-..+.....+.+.+.|..-+.+|++|.|+++........+..|+..+...+.
T Consensus 237 a~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr 316 (591)
T KOG0057|consen 237 ASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYR 316 (591)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999998887776666555444444445556666677777889999999999998899999999999999998
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHH
Q 000751 273 SFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352 (1303)
Q Consensus 273 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKST 352 (1303)
.+.++..-+.-++...+...+..+. ..+....++.|+|+||+|+|+ +++++|+++||+|++||++||||+|||||||
T Consensus 317 ~~~q~l~Dm~~~~~l~~~~~~i~~~-~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKST 393 (591)
T KOG0057|consen 317 ELRQALTDMRTLFILLEVDEDIQEA-ALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKST 393 (591)
T ss_pred HHHHHHHhHHHHHhhhhhhhhhhhc-cCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHH
Confidence 8888877766665544332222111 112223456799999999996 4567999999999999999999999999999
Q ss_pred HHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHh
Q 000751 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISS 431 (1303)
Q Consensus 353 l~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~ 431 (1303)
++++|+||++ ++|+|+|||+|+++++++++|+.|||||||..||++||.+||.+|+ ++++|++.++|+.+++||-+.+
T Consensus 394 ilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~ 472 (591)
T KOG0057|consen 394 ILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISR 472 (591)
T ss_pred HHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh
Confidence 9999999999 9999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccccc
Q 000751 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNA 511 (1303)
Q Consensus 432 l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~ 511 (1303)
+|+||+|.|||+|..||||||||||||||++|||||++||||||+||.+||+.+.+.+.....+||+|+|.||+++++.+
T Consensus 473 l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~ 552 (591)
T KOG0057|consen 473 LPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDF 552 (591)
T ss_pred ccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred CEEEEEeCceEeeccChHHHhhcChhHHHHHHHHH
Q 000751 512 DYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEE 546 (1303)
Q Consensus 512 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 546 (1303)
|+|+++++|++.+.|+|+||++.++.|+++|..|.
T Consensus 553 DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 553 DKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQT 587 (591)
T ss_pred CEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccc
Confidence 99999999999999999999998899999998664
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-77 Score=754.82 Aligned_cols=507 Identities=31% Similarity=0.475 Sum_probs=468.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000751 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHN 115 (1303)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~ 115 (1303)
++++.++.+++.++..++....+.++...+|..+++++++.|.+++++. +.|++++|+++|++.+++++.+.+..++.+
T Consensus 60 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~ 138 (571)
T TIGR02203 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRE 138 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555667778888888889999999999999999999999999985 889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHH
Q 000751 116 MATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (1303)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 195 (1303)
+..+++.++++++++|.+++++++..|+++++..++.++.++..++.++..++..+.+.|.++|+++||+++.++.+.++
T Consensus 139 ~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 218 (571)
T TIGR02203 139 TLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRR 218 (571)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFD 275 (1303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~ 275 (1303)
|.+..++..+...+.....++...+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~ 298 (571)
T TIGR02203 219 FDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQ 298 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888887777777777777788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHH
Q 000751 276 QGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355 (1303)
Q Consensus 276 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ 355 (1303)
+++.+.+|+.++++.+++..... ...++..+.|+++||+|+|++. ++++|+|+||+|++||+++|+|+||||||||++
T Consensus 299 ~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~ 376 (571)
T TIGR02203 299 RGLAAAESLFTLLDSPPEKDTGT-RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVN 376 (571)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 99999999999998664432111 1112234579999999999753 457999999999999999999999999999999
Q ss_pred HHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC--CCCHHHHHHHHHHhcchHHHHhcc
Q 000751 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLE 433 (1303)
Q Consensus 356 ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~ 433 (1303)
+|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|++|++||+|||.+++ +.++++++++++.|++++++.++|
T Consensus 377 lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp 456 (571)
T TIGR02203 377 LIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLP 456 (571)
T ss_pred HHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999995 689999999999999999999999
Q ss_pred cccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCE
Q 000751 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY 513 (1303)
Q Consensus 434 ~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~ 513 (1303)
+|+||.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+
T Consensus 457 ~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ 536 (571)
T TIGR02203 457 LGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADR 536 (571)
T ss_pred CcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred EEEEeCceEeeccChHHHhhcChhHHHHHHHH
Q 000751 514 IAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (1303)
Q Consensus 514 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 545 (1303)
|++|++|++++.|+|++++++++.|+++++.+
T Consensus 537 ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~ 568 (571)
T TIGR02203 537 IVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568 (571)
T ss_pred EEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999999999999987754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-78 Score=750.39 Aligned_cols=462 Identities=22% Similarity=0.264 Sum_probs=416.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000751 40 AGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATF 119 (1303)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~ 119 (1303)
.++..++.++..++....+.++..++|.++|+|++++|..+|+++ ++|++++|+++|++.+++.+...+..++.++..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 63 GIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888999999999999999999999999985 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 000751 120 FSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIF-LHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYAT 198 (1303)
Q Consensus 120 ~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 198 (1303)
++.++++++++|.+++++++.+|++.++...+.++ .++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 99999999999999999988878776655444444 45556777788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGR 278 (1303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 278 (1303)
..++..+...+.....+...++..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..+...+..+++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888777777777777788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCCC---CCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHH
Q 000751 279 IAAYRLYEMISRSSSTTNYDG---NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355 (1303)
Q Consensus 279 ~a~~ri~~~l~~~~~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ 355 (1303)
.+.+|+.++++.+++..+... ...++..+.|+|+||+|+|++ ++++|+|+||+|++||++|||||||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 999999999987653221111 011123457999999999974 346999999999999999999999999999999
Q ss_pred HHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhccc
Q 000751 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEK 434 (1303)
Q Consensus 356 ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~ 434 (1303)
+|+|+|+|++|+|.+||+|++++ .+++|++|+||||+|+||++||+|||++|+ +++++++++|++.|++++|+.+||+
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 458 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD 458 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc
Confidence 99999999999999999999999 999999999999999999999999999997 7899999999999999999999999
Q ss_pred ccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCC
Q 000751 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (1303)
Q Consensus 435 g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~ 505 (1303)
||||.+||+|.+||||||||||||||++++|+|||||||||+||+++|+.|++.+.+..+++|+|+||||+
T Consensus 459 GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 459 GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-76 Score=737.02 Aligned_cols=566 Identities=25% Similarity=0.360 Sum_probs=475.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFY 795 (1303)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 795 (1303)
+++++++.++.++.+.++++++++..++..+.+++++.+++....... ...+.++++++.++..+..++..++
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-------VLPTLALWAGFGVFNTIAYVLVARE 79 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666677777778888888888999988887653220 1112222223344445555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 796 FGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (1303)
Q Consensus 796 ~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~ 875 (1303)
......++..++|.++|++++++|++||++ +++|++++|+++|++.+.+.+...+..++..++++++.+++++.++|.
T Consensus 80 ~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 80 ADRLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777778889999999999999975 678999999999999999998888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 876 LALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGM 955 (1303)
Q Consensus 876 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1303)
+++++++++|++++.........+...++..+...+....+.|.++|+++||+|+.++.+.+++.+..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888777766665556656666667777888999999999999999999999999999988888777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC
Q 000751 956 AIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVP 1035 (1303)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 1035 (1303)
..+....+...+..+..++++++|++++.+|.+++|.+++...+......++.........+..+..+..++.++.+.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 66666666667777778888899999999999999998887777776777777777777777888889999988887543
Q ss_pred CCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEE
Q 000751 1036 KIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLL 1115 (1303)
Q Consensus 1036 ~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~i 1115 (1303)
+.+... .....+...+.|+|+||+|+|++.. ++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 318 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~--~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 318 QREEPA-DAPELPNVKGAVEFRHITFEFANSS--QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccCCc-cCCCCCCCCCeEEEEEEEEECCCCC--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 321111 1111122346799999999997532 4899999999999999999999999999999999999999999999
Q ss_pred CCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCCh
Q 000751 1116 DGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1116 dG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
||.|+++++.+.+|++++||||||++|++||+|||.++.++.++++++++++.+++++++.++|+|+||.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecCh
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
||||||+|||||+++|+|||||||||+||+++++.+++.|++... ++|+|+||||++++..||+|++|++|+++|.|+|
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK-NRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999998754 6999999999999999999999999999999999
Q ss_pred HHHhhcCchhHHHHhhhhh
Q 000751 1276 DSLLAKNGLYVRLMQPHYG 1294 (1303)
Q Consensus 1276 ~eLl~~~g~y~~l~~~~~~ 1294 (1303)
++|++++|.|++++..|..
T Consensus 554 ~~l~~~~~~y~~l~~~~~~ 572 (585)
T TIGR01192 554 QELIQKDGRFYKLLRRSGL 572 (585)
T ss_pred HHHHHCCChHHHHHHhCcc
Confidence 9999999999999987754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-77 Score=748.34 Aligned_cols=489 Identities=27% Similarity=0.400 Sum_probs=443.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000751 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIA 134 (1303)
Q Consensus 55 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (1303)
.....++...+|.++|+|++++|+.+|++. ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++|.++
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666799999999999999985 8899999999999999998888888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 135 LITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQ 214 (1303)
Q Consensus 135 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (1303)
+++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.++.+.++|.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888888888899999999999999999999999999999999999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 000751 215 GLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSST 294 (1303)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 294 (1303)
.+...+..++..+..++++++|++++.+|.+|+|.+++++.++..+..|+..+...+..+..++.+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 66666666677777778889999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCC-CCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCe
Q 000751 295 TNYDGN-TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE 373 (1303)
Q Consensus 295 ~~~~~~-~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 373 (1303)
+..... ..+...+.|+++||+|+||+ ++++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|.+||+
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~ 397 (588)
T PRK13657 320 RDPPGAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397 (588)
T ss_pred CCCCCCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 211111 11223357999999999973 346999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 374 NIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 374 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
|+++++.+++|++|+||||+|++|++||+|||++++ ++++++++++++.+++++++.++|+|+||.+|++|.+||||||
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 999999999999999999999999999999999997 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHh
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
|||+||||++++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++.++.||+|++|++|++++.|+|++++
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred hcChhHHHHHHHHH
Q 000751 533 ATGDLYAELLKCEE 546 (1303)
Q Consensus 533 ~~~~~~~~~~~~~~ 546 (1303)
++++.|+++++.+.
T Consensus 558 ~~~~~y~~l~~~~~ 571 (588)
T PRK13657 558 ARGGRFAALLRAQG 571 (588)
T ss_pred HCCChHHHHHHHhh
Confidence 99999999998654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-77 Score=738.92 Aligned_cols=520 Identities=22% Similarity=0.254 Sum_probs=432.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 723 SFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEK 802 (1303)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 802 (1303)
.++.++.+++.+++.++...+..+.+++++.+++...... . ......+...++++.++..++.++..++..+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (529)
T TIGR02868 8 LQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP--P--VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALR 83 (529)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555556666666666777777777554221 0 00011111122234556677788888888999999
Q ss_pred HHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 803 MTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALA 882 (1303)
Q Consensus 803 ~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~ 882 (1303)
+..++|.++|++++++|..||++ +++|++++|+++|++.++..+...+..++..+..++++++++++++|.+++++++
T Consensus 84 ~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 161 (529)
T TIGR02868 84 SLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAA 161 (529)
T ss_pred HHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999975 6889999999999999999999999888999999999999999999999999888
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 883 TLPILSLSA-IAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAF 961 (1303)
Q Consensus 883 ~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1303)
.+|++.+.. .+..+..+...++.++...+....+.|.++|+++||+|+.++.+.++|++..++..+...+.....+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02868 162 GLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGA 241 (529)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765544 3333334445566667778888999999999999999999999999999999988888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000751 962 GFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDD 1041 (1303)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 1041 (1303)
.+..++..+...+++++|++++..|.++++.+.....+......++.........+.+...+.+|+.++++.+++.+...
T Consensus 242 ~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 321 (529)
T TIGR02868 242 AAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV 321 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC
Confidence 77777788888888899999999999999987776666666666666666667778888899999999987654322111
Q ss_pred CC-CCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeC
Q 000751 1042 SS-AVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDL 1120 (1303)
Q Consensus 1042 ~~-~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di 1120 (1303)
.. ....+...+.|+|+||+|+|++++ ++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~--~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i 399 (529)
T TIGR02868 322 VPAAGALGLGKPTLELRDLSFGYPGSP--PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSV 399 (529)
T ss_pred CCCCcccCCCCceEEEEEEEEecCCCC--ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence 11 111112346799999999998543 599999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1121 KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1121 ~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
+++ .+++|++|+||||||+||+|||||||.+|.|+++|+++++|++.|+++|||.++|+||||.+||+|.+||||||||
T Consensus 400 ~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR 478 (529)
T TIGR02868 400 SSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR 478 (529)
T ss_pred hhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH
Confidence 999 9999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCc
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRA 1252 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl 1252 (1303)
||||||++++|+|||||||||+||++||+.|++.+++..+ ++|+|+||||+
T Consensus 479 iaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~-~~TvIiItHrl 529 (529)
T TIGR02868 479 LALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALS-GKTVVVITHHL 529 (529)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEecCC
Confidence 9999999999999999999999999999999999998754 69999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-76 Score=741.67 Aligned_cols=562 Identities=31% Similarity=0.493 Sum_probs=478.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 724 FAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKM 803 (1303)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 803 (1303)
+..+..+.+.++..++...+....++++..+++..+.... ......++.+++++.++..+..+++.++...++.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (576)
T TIGR02204 14 RPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS----SGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERV 89 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555666666677777788887776443221 112223344444555556677778888899999999
Q ss_pred HHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 804 TERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALAT 883 (1303)
Q Consensus 804 ~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~ 883 (1303)
...+|..+++++++.|.++|+. .+.|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.
T Consensus 90 ~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 167 (576)
T TIGR02204 90 VADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167 (576)
T ss_pred HHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999975 56899999999999999999988888888999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 884 LPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGF 963 (1303)
Q Consensus 884 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1303)
+|+.++.........++..++..+...+....+.|.++|+++||+++.++++.++|++..++..+...+..........+
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (576)
T TIGR02204 168 VPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAI 247 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777766666777777788888888999999999999999999999999999999888777766666555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 000751 964 SQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSS 1043 (1303)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 1043 (1303)
...+.+++.++++++|++.+..|.++++.++....+......++.........+.++..+++|+.++++.+++.+.....
T Consensus 248 ~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 327 (576)
T TIGR02204 248 VIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP 327 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC
Confidence 55666667777888899999999999999887777777777778888888888899999999999998754332211111
Q ss_pred CCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC
Q 000751 1044 AVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY 1123 (1303)
Q Consensus 1044 ~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~ 1123 (1303)
...+.+..+.|+|+||+|+||++.+.++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 328 ~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 328 KTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407 (576)
T ss_pred ccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc
Confidence 11111224679999999999864334699999999999999999999999999999999999999999999999999999
Q ss_pred CHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1124 NLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1124 ~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
+.+++|++|+||||||++|+|||||||.++.|+.++++++++++.+++.++++++|+|+||.+||+|.+|||||||||+|
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~l 487 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAI 487 (576)
T ss_pred CHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCc
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNG 1283 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g 1283 (1303)
|||++++|+|||||||||+||+++++.+.+.+++..+ ++|+|+||||++.+..||+|++|++|+++|.|+|++|+++++
T Consensus 488 aRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 488 ARAILKDAPILLLDEATSALDAESEQLVQQALETLMK-GRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566 (576)
T ss_pred HHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence 9999999999999999999999999999999998755 699999999999999999999999999999999999999999
Q ss_pred hhHHHHhhh
Q 000751 1284 LYVRLMQPH 1292 (1303)
Q Consensus 1284 ~y~~l~~~~ 1292 (1303)
.|++|+..|
T Consensus 567 ~~~~l~~~~ 575 (576)
T TIGR02204 567 LYARLARLQ 575 (576)
T ss_pred hHHHHHhhc
Confidence 999999865
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-76 Score=736.52 Aligned_cols=542 Identities=23% Similarity=0.337 Sum_probs=463.4
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Q 000751 744 NPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWF 823 (1303)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ff 823 (1303)
..+.+++++.+++....... .......|+++++++.++..++.++..++....+.++..++|.++|++++++|++||
T Consensus 11 ~~~~p~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~ 87 (569)
T PRK10789 11 QLIPPKVVGIIVDGVTEQHM---TTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFY 87 (569)
T ss_pred HHHHHHHHHHHHHHhccCCc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34455667777775543210 011233455555556666777788888888889999999999999999999999999
Q ss_pred ccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 824 DEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIG-MLLEWRLALVALATLPILSLSAIAQKLWLAGFS 902 (1303)
Q Consensus 824 d~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~ 902 (1303)
++ .++|++++|+++|++.++..+...+..++..++..+++++++ +.++|.+++++++++|++++......+...+..
T Consensus 88 ~~--~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~ 165 (569)
T PRK10789 88 LR--HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERF 165 (569)
T ss_pred cC--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 679999999999999999877777777777666666555554 589999999999888888777666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000751 903 RGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKS 982 (1303)
Q Consensus 903 ~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 982 (1303)
++.++...+....+.|.+.|+++||+|+.++.+.++|.+..++..+...+.....+....+...+..++..+++++|+++
T Consensus 166 ~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l 245 (569)
T PRK10789 166 KLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWM 245 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888999999999999999999999999999998888887777777666666666666677777888999999
Q ss_pred hhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEE
Q 000751 983 VRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFC 1062 (1303)
Q Consensus 983 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~ 1062 (1303)
+.+|.+++|.+++...+......++.........+.++..+.+|+.++++.+++.+... ...+...+.|+|+||+|+
T Consensus 246 v~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 246 VVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFT 322 (569)
T ss_pred HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEE
Confidence 99999999998888877777777777777777888888999999999987654322111 111223468999999999
Q ss_pred CCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccC
Q 000751 1063 YPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIF 1142 (1303)
Q Consensus 1063 Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF 1142 (1303)
|++. +.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|++||+|+++++.+++|++++||||+|++|
T Consensus 323 y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 323 YPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred CCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 9753 236999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000751 1143 STTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222 (1303)
Q Consensus 1143 ~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSa 1222 (1303)
++||||||.++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+
T Consensus 402 ~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~ 481 (569)
T PRK10789 402 SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSA 481 (569)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHhhhhhc
Q 000751 1223 IESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYGK 1295 (1303)
Q Consensus 1223 LD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~~~~~~ 1295 (1303)
||+++++.+++.|++... ++|+|+||||++++..||+|++|++|+++|.|+|++|++++|.|++++..|..+
T Consensus 482 LD~~~~~~i~~~l~~~~~-~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~~ 553 (569)
T PRK10789 482 VDGRTEHQILHNLRQWGE-GRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQLE 553 (569)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhhhc
Confidence 999999999999998754 699999999999999999999999999999999999999999999999876543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-76 Score=738.73 Aligned_cols=489 Identities=26% Similarity=0.382 Sum_probs=443.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000751 55 ILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIA 134 (1303)
Q Consensus 55 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 134 (1303)
.....++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++.+.+...+..++.+++.++++++++|.++
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666799999999999999985 8899999999999999999998888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 135 LITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQ 214 (1303)
Q Consensus 135 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (1303)
+++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.....
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888899999999999999999999999999999999999988888777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 000751 215 GLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSST 294 (1303)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 294 (1303)
++...+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..+...+..+..++.+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 66666666666777778889999999999999999999999999999999999999999999999999999999865432
Q ss_pred CCCCC-CCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCe
Q 000751 295 TNYDG-NTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE 373 (1303)
Q Consensus 295 ~~~~~-~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 373 (1303)
.+... ...+...+.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|.+||.
T Consensus 320 ~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 397 (585)
T TIGR01192 320 EEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397 (585)
T ss_pred cCCccCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE
Confidence 21111 111223456999999999963 346999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 374 NIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 374 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
|+++++.+++|++++||+|+|++|++|++|||.++. ++++++++++++.+++++++.++|+|++|.+|++|.+||||||
T Consensus 398 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 999999999999999999999999999999999996 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHh
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
|||+|||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|++++
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hcChhHHHHHHHHH
Q 000751 533 ATGDLYAELLKCEE 546 (1303)
Q Consensus 533 ~~~~~~~~~~~~~~ 546 (1303)
++++.|+++++.+.
T Consensus 558 ~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 558 QKDGRFYKLLRRSG 571 (585)
T ss_pred HCCChHHHHHHhCc
Confidence 99999999998653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-79 Score=667.65 Aligned_cols=492 Identities=29% Similarity=0.424 Sum_probs=421.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000751 794 FYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVI-VAVIIGMLL 872 (1303)
Q Consensus 794 ~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i-~~~~~~~~~ 872 (1303)
.++...++.+...+--+.|.|+.++++.|.-+ ..+|.+..-+.....-+...+...+...+..++-+. ++++++..+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 45667778888888899999999999999865 345666655555665666666665655555555444 344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 000751 873 EWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFL 952 (1303)
Q Consensus 873 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1303)
+|+.+++.++++.+++++.+...-+...+.|..+..+.+++....+++-+.+|+|.|+.|+++..+|.+.++.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999999988888877788888999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 000751 953 HGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIID 1032 (1303)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1032 (1303)
.....++.......+.......+...++..+..|.+++|++.....++.....++...-.....+.++...+++++++.+
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 77666666666666666677777788888899999999998776666555555544444444566677788888888877
Q ss_pred cCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccE
Q 000751 1033 RVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112 (1303)
Q Consensus 1033 ~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~ 1112 (1303)
.+.+.........-.+...|.|.|+||+|.|..+ .|+|+|+||++++|+++||||+||+||||+.++|+||||+++|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 6544332211111112446889999999999654 46999999999999999999999999999999999999999999
Q ss_pred EEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCC
Q 000751 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVD 1192 (1303)
Q Consensus 1113 I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~ 1192 (1303)
|.|||+||+++..+.+|+.||+||||.+||+.|+..||.||+|+++++|+++|++.+++++||+++|+||||.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEe
Q 000751 1193 LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE 1272 (1303)
Q Consensus 1193 LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~ 1272 (1303)
||||||||+||||++|++|+||+|||||||||.+||++||.+|+.... ++|.++|||||+|+.+||.|+||++|+|+|.
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~-~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 999999999999999999999999999999999999999999999875 6999999999999999999999999999999
Q ss_pred cChHHHhhcCchhHHHHh
Q 000751 1273 GTHDSLLAKNGLYVRLMQ 1290 (1303)
Q Consensus 1273 Gt~~eLl~~~g~y~~l~~ 1290 (1303)
|+|+||+.++|.|++||.
T Consensus 479 g~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAAGGLYAEMWR 496 (497)
T ss_pred CcHHHHHHcCChHHHHhc
Confidence 999999999999999996
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-76 Score=742.58 Aligned_cols=507 Identities=34% Similarity=0.517 Sum_probs=457.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000751 38 YIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA 117 (1303)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~ 117 (1303)
++.+...++.++..+.....+.++...+|..++++++++|..+|++. +.|++++|+++|++.+++++.+.+..++.++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 144 (576)
T TIGR02204 66 VVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNAL 144 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556667777778888999999999999999999999999984 88999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHH
Q 000751 118 TFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYA 197 (1303)
Q Consensus 118 ~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 197 (1303)
.+++.++++++++|.+++++++..|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~ 224 (576)
T TIGR02204 145 MCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFG 224 (576)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHH
Confidence 99999999999999999999998898888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 198 TSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (1303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (1303)
+..++..+...+......+...+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~ 304 (576)
T TIGR02204 225 GAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRA 304 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877777666666655555555556666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCC-CCC-CCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHH
Q 000751 278 RIAAYRLYEMISRSSSTTNYD-GNT-LPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIP 355 (1303)
Q Consensus 278 ~~a~~ri~~~l~~~~~~~~~~-~~~-~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ 355 (1303)
+.+.+|+.++++.+++..... ... ..+..+.|+++||+|+||+++++++|+|+||+++|||+++|+|+||||||||++
T Consensus 305 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlk 384 (576)
T TIGR02204 305 AGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQ 384 (576)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 999999999998654321111 111 112234699999999997533367999999999999999999999999999999
Q ss_pred HHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhccc
Q 000751 356 LMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEK 434 (1303)
Q Consensus 356 ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~ 434 (1303)
+|+|+|+|++|+|.+||.|+++++.+++|++|+||||+|++|++||+|||.+++ +.++++++++++.++++++++++|+
T Consensus 385 lL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~ 464 (576)
T TIGR02204 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE 464 (576)
T ss_pred HHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999987 6789999999999999999999999
Q ss_pred ccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEE
Q 000751 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYI 514 (1303)
Q Consensus 435 g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i 514 (1303)
|++|.+||+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+++..+++|+|+||||++.++.+|+|
T Consensus 465 gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~v 544 (576)
T TIGR02204 465 GYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRI 544 (576)
T ss_pred CCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred EEEeCceEeeccChHHHhhcChhHHHHHHHH
Q 000751 515 AVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (1303)
Q Consensus 515 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 545 (1303)
++|++|++++.|+|++++++++.|++++..|
T Consensus 545 i~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 545 VVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred EEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 9999999999999999999999999988654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-76 Score=797.34 Aligned_cols=501 Identities=20% Similarity=0.234 Sum_probs=431.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000751 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (1303)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~ 118 (1303)
++++..++.++..++....+.+...++|.++++++++.|+.||+++ ++|++++|+++|++.+++.+...+..++..++.
T Consensus 1014 l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~ 1092 (1522)
T TIGR00957 1014 LGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFN 1092 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777788999999999999999999999999995 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHH
Q 000751 119 FFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYAT 198 (1303)
Q Consensus 119 ~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 198 (1303)
+++.++++++.+|.++++++.+++++.++..++.+..+...+...+..+.+.+.+.|+++|+++||+|++|+.+.+++.+
T Consensus 1093 ~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~ 1172 (1522)
T TIGR00957 1093 VIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDL 1172 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHH
Confidence 99999999988887766655444444444444444444444445566678889999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVT-HNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQG 277 (1303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 277 (1303)
..+...+..........+......++.. ++++++|.+.+. .|.+++|.+.+++.+...+..|+..+...+..++.+
T Consensus 1173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~ 1249 (1522)
T TIGR00957 1173 KVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETN 1249 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766655555554444333322 233444555554 578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCC-CC-CCCC--CCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHH
Q 000751 278 RIAAYRLYEMISRSSSTTNY-DG-NTLP--SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSI 353 (1303)
Q Consensus 278 ~~a~~ri~~~l~~~~~~~~~-~~-~~~~--~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl 353 (1303)
.+|++|+.++++.+++.... .+ ..++ +.++.|+|+||+|+|+++ ..++|+||||+|++||++||||+||||||||
T Consensus 1250 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL 1328 (1522)
T TIGR00957 1250 IVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSL 1328 (1522)
T ss_pred HHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999999776543211 11 1111 245789999999999743 3479999999999999999999999999999
Q ss_pred HHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcc
Q 000751 354 IPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLE 433 (1303)
Q Consensus 354 ~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 433 (1303)
+++|.|+|+|++|+|.+||+|+++++.+++|++|++|||||+||+|||||||....+++++++++|++.|+++++|.++|
T Consensus 1329 ~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp 1408 (1522)
T TIGR00957 1329 TLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALP 1408 (1522)
T ss_pred HHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999555899999999999999999999999
Q ss_pred cccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCE
Q 000751 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADY 513 (1303)
Q Consensus 434 ~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~ 513 (1303)
+||||.|||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+
T Consensus 1409 ~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~Dr 1488 (1522)
T TIGR00957 1409 DKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTR 1488 (1522)
T ss_pred cCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred EEEEeCceEeeccChHHHhhcChhHHHHHHH
Q 000751 514 IAVMDEGRLFEMGTHDELLATGDLYAELLKC 544 (1303)
Q Consensus 514 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 544 (1303)
|+|||+|+|+|.|+|+||+++++.|+++++.
T Consensus 1489 IlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1489 VIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred EEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-77 Score=658.84 Aligned_cols=488 Identities=30% Similarity=0.427 Sum_probs=427.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhH
Q 000751 53 CWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFS-GLAIAFVNCW 131 (1303)
Q Consensus 53 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 131 (1303)
++...++.....+--+.|.|+.++++.|+-++ ++|.+...+....+-|+..+...+...+..++-+.. +.++...++|
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 34556777777788899999999999999884 889987766666656655555444444444443333 3344456899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Q 000751 132 QIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211 (1303)
Q Consensus 132 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 211 (1303)
+.+++.++++.+++++......+.....++..++.+++++...+++-+..++|.|+.|+.+..+|.+.++.+.+...+..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99999888888887777777777667777778888999999999999999999999999999999999999999888876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 000751 212 LVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS 291 (1303)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 291 (1303)
.-..+....-..+.......+...+...+..|++|.|+++....+++....|+..++..+..+.+++.-.++.+++++.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 66555544444555556666677788889999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCC-CCCCC-CCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE
Q 000751 292 SSTTNYD-GNTLP-SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369 (1303)
Q Consensus 292 ~~~~~~~-~~~~~-~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 369 (1303)
.+..+.. ..+.. ...+.+.|+||+|.|. +.+++|+++||++++|+++|||||||+||||++++|.|||++++|.|.
T Consensus 244 ~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~ 321 (497)
T COG5265 244 AEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321 (497)
T ss_pred hhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE
Confidence 5443221 11122 3356799999999996 567999999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCC
Q 000751 370 LDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (1303)
Q Consensus 370 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LS 448 (1303)
+||+|+++...+++|+.||.||||..||++|+..||.+|+ +++++|+.++++.+++++||+.+|+||+|.|||+|..||
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklS 401 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeecc
Confidence 9999999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccCh
Q 000751 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (1303)
Q Consensus 449 gGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~ 528 (1303)
||||||+||||+++++|+||+|||+|||||.+||+.|+.+|++..+|+|+++|+|||+++-+||.|+||++|+|+|.|+|
T Consensus 402 ggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred CchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcChhHHHHHH
Q 000751 529 DELLATGDLYAELLK 543 (1303)
Q Consensus 529 ~~l~~~~~~~~~~~~ 543 (1303)
+||++.+|.|++||.
T Consensus 482 ~~ll~~~g~ya~mw~ 496 (497)
T COG5265 482 EELLAAGGLYAEMWR 496 (497)
T ss_pred HHHHHcCChHHHHhc
Confidence 999999999999985
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-75 Score=728.48 Aligned_cols=505 Identities=24% Similarity=0.280 Sum_probs=440.2
Q ss_pred CChhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchh
Q 000751 10 FPVPKFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGD 89 (1303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~ 89 (1303)
+....++|.+.........+..++..+++++++..++.++..+.....+.++..++|.++|++++++|..+|+++ ++|+
T Consensus 24 ~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~ 102 (529)
T TIGR02857 24 WLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGR-PSGE 102 (529)
T ss_pred HHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccC-ChHH
Confidence 334456676532211212222333444445566677888888889999999999999999999999999999985 8999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 90 IVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEA 169 (1303)
Q Consensus 90 l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1303)
+++|+++|++.+++++...+..++..++.+++.++++++++|.+++++++..|+++++..++.++.++..++.++..++.
T Consensus 103 ~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (529)
T TIGR02857 103 LATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRL 182 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889888877888888888888889999999
Q ss_pred HHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHH
Q 000751 170 ASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGE 249 (1303)
Q Consensus 170 ~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~ 249 (1303)
.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+.......+..++..+..+++++++++.+.+|.+|+|.
T Consensus 183 ~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~ 262 (529)
T TIGR02857 183 SGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLAT 262 (529)
T ss_pred HHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999999988888877777666666555555555555555555677777799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccc
Q 000751 250 IVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSG 329 (1303)
Q Consensus 250 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~ 329 (1303)
+++++.+...+..|+..+...+..+++++.+.+|+.++++.+++..+.. .......+.|+|+||+|+||+. ++++|+|
T Consensus 263 ~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~ 340 (529)
T TIGR02857 263 GLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVTAAPAPSLEFSGLSVAYPGR-RAPALRP 340 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCCCCCCCeEEEEEEEEECCCC-Ccccccc
Confidence 9999999989999999999999999999999999999997543221111 1111123479999999999743 3579999
Q ss_pred eeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC
Q 000751 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR 409 (1303)
Q Consensus 330 i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~ 409 (1303)
+||+|++|+++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++|+||+|+|++|++||+|||.++.
T Consensus 341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~ 420 (529)
T TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420 (529)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000751 410 -DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA 488 (1303)
Q Consensus 410 -~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~ 488 (1303)
++++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.
T Consensus 421 ~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~ 500 (529)
T TIGR02857 421 PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEA 500 (529)
T ss_pred CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCeEEEEecCCccccccCEEEEE
Q 000751 489 LDLLMLGRSTIIIARRLSLIRNADYIAVM 517 (1303)
Q Consensus 489 l~~~~~~~t~i~ith~~~~~~~~d~i~~l 517 (1303)
+++..+++|+|+||||+++++.||+|++|
T Consensus 501 l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 501 LRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-74 Score=714.21 Aligned_cols=525 Identities=23% Similarity=0.311 Sum_probs=446.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 730 AVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRR 809 (1303)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 809 (1303)
+.++++++++.+.+.+..+++++.+++....... .......+.+++++++++..++.+++.++..+.+.++..++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGE---PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777888888888886632110 1123344566666777778888999999999999999999999
Q ss_pred HHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 810 MMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSL 889 (1303)
Q Consensus 810 ~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~ 889 (1303)
++|+++++.|..||++ .++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|+.++
T Consensus 82 ~l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 82 RLLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999974 78999999999999999999998888888888888888889999999999999988888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 890 SAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLF 969 (1303)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1303)
......+..+...++.++...+....+.|.++|+++||+|+.++++.++|++..++..+...+..........+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667777777888899999999999999999999999999998888877776666655555555555555
Q ss_pred HHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000751 970 ACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPN 1049 (1303)
Q Consensus 970 ~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 1049 (1303)
+...+++.+++..+..|.++++.++....+......++.........+.++..+++|+.++++.+++.. ... . .++.
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~-~~~-~-~~~~ 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA-GKA-P-VTAA 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCc-C-CCCC
Confidence 555555566677777899999988877666666666777777777888899999999999987432211 111 1 1111
Q ss_pred CcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhh
Q 000751 1050 VYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1050 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 1129 (1303)
..+.|+|+||+|+||+.+ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||.|+++++.+++|
T Consensus 317 ~~~~i~~~~v~f~y~~~~-~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCCCC-cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 236799999999998643 3699999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1130 NHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
++++||||||++|++||||||.++.++.+|++++++++.++++++++++|+|+||.+||+|.+||||||||++||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEE
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVL 1264 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl 1264 (1303)
+|+|||||||||+||+++|+.+++.+++..+ ++|+|+||||+++++.||+|+||
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQ-GRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999998754 69999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-74 Score=779.88 Aligned_cols=504 Identities=21% Similarity=0.259 Sum_probs=401.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000751 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (1303)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~ 116 (1303)
++++++..++.+++.++....+.+...++|.+++++++++|+.||+++ ++|++++|+++|++.+++.+...+..++..+
T Consensus 960 ~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~ 1038 (1622)
T PLN03130 960 ALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQI 1038 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677777788888999999999999999999999999995 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHH
Q 000751 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAG-GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (1303)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 195 (1303)
+.+++.++++++++|.. ++++++++++++.. .++.+..++..+......+...+.+.|+++|+++||+|++++++.+.
T Consensus 1039 ~~~i~~~i~i~~~~~~~-~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~ 1117 (1622)
T PLN03130 1039 FQLLSTFVLIGIVSTIS-LWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEI 1117 (1622)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHH
Confidence 88888888888888733 32222222222111 12222222333333445567788999999999999999999877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cc-----HHHHHHHHHHHHHHHHHHHHHHH
Q 000751 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNK-AH-----GGEIVTALFAVILSGLGLNQAAT 269 (1303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~-~~-----~g~l~~~~~~~~~~~~~l~~~~~ 269 (1303)
+.+..+...+..........+......++ ..+++++.|.+.+..+. .. .+.+..++.+...+..++..+..
T Consensus 1118 ~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~ 1194 (1622)
T PLN03130 1118 NGRSMDNNIRFTLVNMSSNRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLR 1194 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554444333222222222222211 12222333334344332 11 22232333444555566677777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC-C-CCCCC--CCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECC
Q 000751 270 NFYSFDQGRIAAYRLYEMISRSSSTTNY-D-GNTLP--SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGR 345 (1303)
Q Consensus 270 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~-~~~~~--~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~ 345 (1303)
.+..++.+..|.+|+.++++.+++.... + ..+.+ +.++.|+|+||+|+|++ +.+++|+|+||+|+|||++||||+
T Consensus 1195 ~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~-~~~~VL~~is~~I~~GekVaIVGr 1273 (1622)
T PLN03130 1195 LASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFEISPSEKVGIVGR 1273 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCC-CCCceecceeEEEcCCCEEEEECC
Confidence 7788899999999999999876543211 1 11111 24578999999999963 234799999999999999999999
Q ss_pred CCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcc
Q 000751 346 NGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425 (1303)
Q Consensus 346 sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~ 425 (1303)
||||||||+++|.|+|+|++|+|.|||+|+++++.+++|++|++|||||.||+|||||||.++++++++++++|++.|++
T Consensus 1274 SGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l 1353 (1622)
T PLN03130 1274 TGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHL 1353 (1622)
T ss_pred CCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCC
Q 000751 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (1303)
Q Consensus 426 ~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~ 505 (1303)
+++|.++|+|+||.|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++..+++|+|+||||+
T Consensus 1354 ~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL 1433 (1622)
T PLN03130 1354 KDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1433 (1622)
T ss_pred HHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCEEEEEeCceEeeccChHHHhhc-ChhHHHHHHHHH
Q 000751 506 SLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCEE 546 (1303)
Q Consensus 506 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 546 (1303)
+++.+||+|+||++|+|+|.|+|+||+++ ++.|+++++...
T Consensus 1434 ~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1434 NTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999999999999999987 689999987643
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-74 Score=778.13 Aligned_cols=500 Identities=19% Similarity=0.219 Sum_probs=416.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 44 FAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL 123 (1303)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~ 123 (1303)
+++.++..+.....+.+...++|.++++++++.|+.||+++ ++|++++|+++|++.+++.+...+..++..++.+++.+
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~l 1090 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555677788999999999999999999995 89999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHH
Q 000751 124 AIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQAT 203 (1303)
Q Consensus 124 ~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 203 (1303)
+++++.+|.+.++++..+.++..+...+.+..+...+......+.+.+.+.|+++|+++||+|++++.+.++|.+..+..
T Consensus 1091 i~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~ 1170 (1560)
T PTZ00243 1091 LVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVV 1170 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99999888544332221111222222333333334444445667788999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 204 LRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFL--VTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAA 281 (1303)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~ 281 (1303)
.+..+.......+......++..+..+++++++... ...+.+++|.+..++.+...+..|+..+...+..++.++.+.
T Consensus 1171 ~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1171 YSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766555555555544444444433333444333 334557889888888888888899999999999999999999
Q ss_pred HHHHHHhccCCCCCCC--------------------------CCC-----CCCCCCccEEEEEEEEEcCCCCCCCcccce
Q 000751 282 YRLYEMISRSSSTTNY--------------------------DGN-----TLPSVHGNIEFRNVYFSYLSRPEIPILSGF 330 (1303)
Q Consensus 282 ~ri~~~l~~~~~~~~~--------------------------~~~-----~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i 330 (1303)
+|+.++++..+++... ... +..+..+.|+|+||+|+|++ +..++|+||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~-~~~~vL~~v 1329 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE-GLPLVLRGV 1329 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCC-CCCceeecc
Confidence 9999998643221100 000 00113467999999999964 234699999
Q ss_pred eEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCC
Q 000751 331 YLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD 410 (1303)
Q Consensus 331 ~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~ 410 (1303)
||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||..+.+
T Consensus 1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~ 1409 (1560)
T PTZ00243 1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLE 1409 (1560)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC-CCEEEEeCCCCCCCHHHHHHHHHHH
Q 000751 411 ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN-PSILLLDEVTGGLDFEAERAVQEAL 489 (1303)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~-~~ililDe~ts~lD~~~~~~i~~~l 489 (1303)
++++++++|++.|+++++|.++|+||||.|||+|.+|||||||||||||||+++ |+|||||||||+||++|++.|++.|
T Consensus 1410 ~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L 1489 (1560)
T PTZ00243 1410 ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV 1489 (1560)
T ss_pred CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 8999999999999999999999999
Q ss_pred HHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhc-ChhHHHHHHHH
Q 000751 490 DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCE 545 (1303)
Q Consensus 490 ~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 545 (1303)
++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||+++ ++.|+++++.+
T Consensus 1490 ~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1490 MSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 998899999999999999999999999999999999999999985 88999998765
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-74 Score=713.42 Aligned_cols=513 Identities=23% Similarity=0.282 Sum_probs=440.1
Q ss_pred CChhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchh
Q 000751 10 FPVPKFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGD 89 (1303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~ 89 (1303)
+....++|.++.... ...+..++..++.+.++..++.+++.++....+.++..++|.++|+|++++|+. ..++
T Consensus 27 ~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~------~~~~ 99 (544)
T TIGR01842 27 LYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR------RGKI 99 (544)
T ss_pred HHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc------Cccc
Confidence 334455665543221 112222233333344455677788888888899999999999999999999983 2256
Q ss_pred HHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 90 IVSQVLSDVLLIQSALSEK-VGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAE 168 (1303)
Q Consensus 90 l~sr~~~Dv~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1303)
..+++++|++.+++++... +..++..++ .++.++++++++|.+++++++.+|+++++..++.++.++..++.++..++
T Consensus 100 ~~~~~~~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 178 (544)
T TIGR01842 100 DGLQALRDLDQLRQFLTGPGLFAFFDAPW-MPIYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIR 178 (544)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7888999999999988774 444444444 44455788999999999988888888777777788888888888999999
Q ss_pred HHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHH
Q 000751 169 AASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGG 248 (1303)
Q Consensus 169 ~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g 248 (1303)
..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.....+....+..++..+..++++++|++++.+|.+|+|
T Consensus 179 ~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g 258 (544)
T TIGR01842 179 ANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPG 258 (544)
T ss_pred HhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999988888777777776666666666666677788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCccc
Q 000751 249 EIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILS 328 (1303)
Q Consensus 249 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~ 328 (1303)
.+++++.++..+..|+..+...+..+++++.+.+|+.++++.+++..+. ...+...+.|+++||+|+|++ +++++|+
T Consensus 259 ~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~-~~~~~l~ 335 (544)
T TIGR01842 259 MMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA--MPLPEPEGHLSVENVTIVPPG-GKKPTLR 335 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--CCCCCCCCeEEEEEEEEEcCC-CCccccc
Confidence 9999999999999999999999999999999999999999765443211 111223457999999999974 2357999
Q ss_pred ceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcC
Q 000751 329 GFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG 408 (1303)
Q Consensus 329 ~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~ 408 (1303)
|+||++++||+++||||||||||||+++|+|+|+|++|+|.+||+++++++.+++|++|+||+|+|++|++|++|||.++
T Consensus 336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~ 415 (544)
T TIGR01842 336 GISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARF 415 (544)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred C-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 000751 409 R-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487 (1303)
Q Consensus 409 ~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~ 487 (1303)
+ ++++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||||++++|++||||||||+||+++++.+.+
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~ 495 (544)
T TIGR01842 416 GENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN 495 (544)
T ss_pred CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHH
Confidence 6 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhh
Q 000751 488 ALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 488 ~l~~~~-~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
.++++. +++|+|+||||++.++.||+|++|++|++++.|+|+++++
T Consensus 496 ~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 496 AIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 998875 6899999999999999999999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-73 Score=703.62 Aligned_cols=534 Identities=23% Similarity=0.327 Sum_probs=449.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 731 VLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRM 810 (1303)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 810 (1303)
...++..++...+..+.++++..+++....... ......+.++++++.++..++.+++.++..+.+.++..++|.+
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 84 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS----VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQP 84 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566667777888876542211 1223345555666666777888889999999999999999999
Q ss_pred HHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 811 MFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSN-RLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSL 889 (1303)
Q Consensus 811 l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~-~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~ 889 (1303)
+|+++++.|+..+ +...+++.+|++.++..+.. .+..++..+..++ .++++++++|++++++++.+|++++
T Consensus 85 ~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 85 IFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999998432 45678899999999988876 4444444444444 4467889999999988888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 890 SAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLF 969 (1303)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1303)
......+..++..++.++...+....+.|.++|+++||+|+.++.+.++|++..++..+...+.....+....+..++..
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666777778888899999999999999999999999999999988888777777777777777777777
Q ss_pred HHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000751 970 ACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPN 1049 (1303)
Q Consensus 970 ~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 1049 (1303)
++.++++++|++++.+|.+++|.++....+......++.........+.++..+.+|+.++++.+++.++. ...+.
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~ 312 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCC
Confidence 77888889999999999999999988887777777788888888888899999999999998764432211 11122
Q ss_pred CcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhh
Q 000751 1050 VYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1050 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 1129 (1303)
..+.|+++||+|+|++.+ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+.+++.+.+|
T Consensus 313 ~~~~i~~~~v~~~y~~~~-~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGGK-KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCCC-ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 346799999999997542 3699999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1130 NHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
++++||||||++|++|++|||.++.+++++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||+++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998877789999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
+|+|||||||||+||+++++.+.+.+++...+++|+|+||||++++..||+|++|++|+++|.|+|++|+++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999875346999999999999999999999999999999999999764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-74 Score=774.52 Aligned_cols=504 Identities=19% Similarity=0.235 Sum_probs=404.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000751 37 VYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNM 116 (1303)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~ 116 (1303)
+.++++..++.+++.++....+.+...++|.+++++++++|+.||+++ ++|++++|+++|++.+++.+...+..++..+
T Consensus 957 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~ 1035 (1495)
T PLN03232 957 ALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNMFMNQL 1035 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 334445566777778888888999999999999999999999999995 8999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHH
Q 000751 117 ATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISN-IFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYS 195 (1303)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 195 (1303)
+.+++.+++++++++... ++++++++++.+...+. +..++..+......+...+.+.|+++|+++||+|++++.+.++
T Consensus 1036 ~~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1036 WQLLSTFALIGTVSTISL-WAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 888888888877775332 22222222222222222 2222334444556677789999999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcc-----HHHHHHHHHHHHHHHHHHHHHHH
Q 000751 196 YATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVT-HNKAH-----GGEIVTALFAVILSGLGLNQAAT 269 (1303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~~~-----~g~l~~~~~~~~~~~~~l~~~~~ 269 (1303)
+.+..+...+..........+...... .+..+++++.|.+.+. .+.+. .+.+..++.+...+..|+..+..
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~wl~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 1191 (1495)
T PLN03232 1115 NGKSMDNNIRFTLANTSSNRWLTIRLE---TLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLR 1191 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655555444332222222211111 1122222333334443 23321 12222344555666778888899
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC-CC-CCCC--CCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECC
Q 000751 270 NFYSFDQGRIAAYRLYEMISRSSSTTNY-DG-NTLP--SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGR 345 (1303)
Q Consensus 270 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~-~~~~--~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~ 345 (1303)
.+..++.+..|.+|+.++++.+++.... .. .+.+ +..+.|+|+||+|+|++ +.+++|+|+||+|++||++||||+
T Consensus 1192 ~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~-~~~~vL~~isl~I~~GekvaIVG~ 1270 (1495)
T PLN03232 1192 QASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRP-GLPPVLHGLSFFVSPSEKVGVVGR 1270 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECC-CCCcccccceEEEcCCCEEEEECC
Confidence 9999999999999999999876543221 11 1111 24568999999999953 235799999999999999999999
Q ss_pred CCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcc
Q 000751 346 NGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425 (1303)
Q Consensus 346 sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~ 425 (1303)
||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||||+||+|||||||.++++++++++++|++.|++
T Consensus 1271 SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l 1350 (1495)
T PLN03232 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHI 1350 (1495)
T ss_pred CCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCC
Q 000751 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505 (1303)
Q Consensus 426 ~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~ 505 (1303)
+++++++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||+
T Consensus 1351 ~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl 1430 (1495)
T PLN03232 1351 KDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430 (1495)
T ss_pred HHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred ccccccCEEEEEeCceEeeccChHHHhhcC-hhHHHHHHHHH
Q 000751 506 SLIRNADYIAVMDEGRLFEMGTHDELLATG-DLYAELLKCEE 546 (1303)
Q Consensus 506 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 546 (1303)
+++..||+|+||++|+|+|.|+|+||++++ +.|+++++.+.
T Consensus 1431 ~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1431 NTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999999999999986 58999987653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-74 Score=668.51 Aligned_cols=478 Identities=27% Similarity=0.430 Sum_probs=370.0
Q ss_pred cEEEEEEEEEcCCCCC-CCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCC----CcEEEECCeecCCCCHHH
Q 000751 308 NIEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT----LGEVLLDGENIKNLKLEW 382 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~----~G~i~~~g~~~~~~~~~~ 382 (1303)
-++++|++..|...++ ..+++||||++.+||++||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975432 25999999999999999999999999999999999999988 899999999999998876
Q ss_pred Hh----cceEEEecccc-ccc--HhHHHHHh----cCCCC----CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCC
Q 000751 383 LR----SQIGLVTQEPA-LLS--LSIRDNIA----YGRDA----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLAL 447 (1303)
Q Consensus 383 ~~----~~i~~v~Q~~~-l~~--~ti~~ni~----~~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~L 447 (1303)
+| +.|+||+|+|+ .+| .||.+-|. ..... ..++..+.++.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 54 47999999995 454 35554443 32222 22344555556655443322 3345689
Q ss_pred ChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccc-cCEEEEEeCceEee
Q 000751 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (1303)
Q Consensus 448 SgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~ 524 (1303)
|||||||+.||+||..+|++||+||||++||+.++.+|.+.|+++. .|.++|+|||++..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999886 68999999999999875 99999999999999
Q ss_pred ccChHHHhhcCh-hH-HHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCC
Q 000751 525 MGTHDELLATGD-LY-AELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDG 602 (1303)
Q Consensus 525 ~g~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1303)
.|+.++++.+.. .| +.++.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~----------------------------------------------------------- 256 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLA----------------------------------------------------------- 256 (539)
T ss_pred ecCHHHHHhccCCcccHHHHh-----------------------------------------------------------
Confidence 999999875310 00 00000
Q ss_pred CCCCCCCCCCCCCchhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccc
Q 000751 603 AFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNE 682 (1303)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1303)
T Consensus 257 -------------------------------------------------------------------------------- 256 (539)
T COG1123 257 -------------------------------------------------------------------------------- 256 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000751 683 RSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPE 762 (1303)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1303)
. .
T Consensus 257 --------------------------------------------------------------------------a-~--- 258 (539)
T COG1123 257 --------------------------------------------------------------------------A-V--- 258 (539)
T ss_pred --------------------------------------------------------------------------h-C---
Confidence 0 0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHH
Q 000751 763 ERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDAT 842 (1303)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~ 842 (1303)
|. .+.....
T Consensus 259 --------------------------------------------------------p~--~~~~~~~------------- 267 (539)
T COG1123 259 --------------------------------------------------------PR--LGDEKII------------- 267 (539)
T ss_pred --------------------------------------------------------CC--ccccccc-------------
Confidence 00 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000751 843 FVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRN 922 (1303)
Q Consensus 843 ~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 922 (1303)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHH
Q 000751 923 IYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSF 1002 (1303)
Q Consensus 923 i~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~ 1002 (1303)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCC--------CCcceeee
Q 000751 1003 ATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSR--------PEVLVLSN 1074 (1303)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~--------~~~~vL~~ 1074 (1303)
. .+...+.. ...-++++|++.+|..+ ....+++|
T Consensus 268 -----------------------------~-~~~~~~~~--------~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~ 309 (539)
T COG1123 268 -----------------------------R-LPRRGPLR--------AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDD 309 (539)
T ss_pred -----------------------------c-cccccccc--------cCceeEeeeeeeeeccccccccccccceeeeee
Confidence 0 00000000 01137889999999741 23468999
Q ss_pred eeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCee--CCCCCHHHhhcceEEEccCCccC---cccHHHH
Q 000751 1075 FSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRD--LKLYNLRWLRNHLGLVQQEPIIF---STTIREN 1149 (1303)
Q Consensus 1075 isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~d--i~~~~~~~lR~~i~~VpQdp~LF---~gTIreN 1149 (1303)
|||++++||++||||+||||||||.++|+|+++|++|+|.++|.| .+.-+...+|+++-+|+|||+-. ..||+++
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~ 389 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI 389 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHH
Confidence 999999999999999999999999999999999999999999977 33333567888999999999632 3699999
Q ss_pred HHcCCC---CC----CHHHHHHHHHHhchHH-HHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 000751 1150 IIYARH---NA----SEAEVKEAARIANAHH-FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221 (1303)
Q Consensus 1150 l~~g~~---~~----~~~ei~~al~~a~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTS 1221 (1303)
|.-... .. ..+.+.+.++.+++.+ +..+- ...||||||||+||||||..+|++|++|||||
T Consensus 390 i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ry-----------P~elSGGQrQRvaIARALa~~P~lli~DEp~S 458 (539)
T COG1123 390 LAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRY-----------PHELSGGQRQRVAIARALALEPKLLILDEPVS 458 (539)
T ss_pred HHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcC-----------chhcCcchhHHHHHHHHHhcCCCEEEecCCcc
Confidence 963211 11 1233566677777654 33333 44899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhhc-CchhHHHHhh
Q 000751 1222 SIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQP 1291 (1303)
Q Consensus 1222 aLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~~-~g~y~~l~~~ 1291 (1303)
+||+-+.+.|.+.|.++..+ |.|.|+|||+++.++. ||||+||++|+|||.|+.+++.+. +..|.+...+
T Consensus 459 aLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 459 ALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 99999999999999876443 6899999999999876 999999999999999999999887 5677776543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=742.53 Aligned_cols=497 Identities=17% Similarity=0.207 Sum_probs=409.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 43 VFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG 122 (1303)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~ 122 (1303)
..++.+++.+++...+.+...++|.++++++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~ 1016 (1490)
T TIGR01271 938 VLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGA 1016 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777788999999999999999999999999995 8999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHH
Q 000751 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQA 202 (1303)
Q Consensus 123 ~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 202 (1303)
++++++++|.++++++..+.+++++..++.+..+...+......+.+.+.+.|+++|+.+||+|++++.+.+++.+..+.
T Consensus 1017 l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~ 1096 (1490)
T TIGR01271 1017 IFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNL 1096 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999987654333222222222233333333344445556778899999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 203 TLRYGILISLVQGLGLGFTYGLAICSC--ALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIA 280 (1303)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 280 (1303)
..+..........+......++..+.. +++++++. ...+.|.+..++.+.+.+..++..+...+..+.....|
T Consensus 1097 ~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s 1171 (1490)
T TIGR01271 1097 HTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRS 1171 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444333333333222222221111 11122222 23445555556666667777888888888899999999
Q ss_pred HHHHHHHhccCCCCCCCCC---------------CCCC---CCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEE
Q 000751 281 AYRLYEMISRSSSTTNYDG---------------NTLP---SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVAL 342 (1303)
Q Consensus 281 ~~ri~~~l~~~~~~~~~~~---------------~~~~---~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~i 342 (1303)
.+||.++++.+++...... ...+ +..+.|+|+||+|+|++ +.+++|+||||+|++||++||
T Consensus 1172 ~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~-~~~~vL~~is~~I~~GekvaI 1250 (1490)
T TIGR01271 1172 VSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE-AGRAVLQDLSFSVEGGQRVGL 1250 (1490)
T ss_pred HHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC-CCcceeeccEEEEcCCCEEEE
Confidence 9999999976654321100 0001 23468999999999974 346899999999999999999
Q ss_pred ECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHH
Q 000751 343 VGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKI 422 (1303)
Q Consensus 343 vG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~ 422 (1303)
||+||||||||+++|+|+|+ ++|+|+|||+|+++++.+++|++|+||||+|+||+|||||||....+++++++++|++.
T Consensus 1251 vGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1251 LGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEE 1329 (1490)
T ss_pred ECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHH
Confidence 99999999999999999997 79999999999999999999999999999999999999999998778899999999999
Q ss_pred hcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEe
Q 000751 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIA 502 (1303)
Q Consensus 423 ~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~it 502 (1303)
|++++++.++|+|+||.|||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~Ia 1409 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSE 1409 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred cCCccccccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHHHh
Q 000751 503 RRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEA 547 (1303)
Q Consensus 503 h~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 547 (1303)
||++++..+|+|+||++|+|+|.|+|++|+++++.|+++++.+..
T Consensus 1410 HRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1410 HRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred cCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 999999999999999999999999999999988999999886544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=695.66 Aligned_cols=227 Identities=25% Similarity=0.387 Sum_probs=186.9
Q ss_pred cEEEEeeEEECCCCC--------CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC
Q 000751 1053 SIELKNVDFCYPSRP--------EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN 1124 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~--------~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~ 1124 (1303)
-|+++||+++|+.+. ...+|+||||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 135999999999999999999999999999999999999999999999999998776
Q ss_pred HH---HhhcceEEEccCCc--cCc-ccHHHHHHcCC--CCC-C----HHHHHHHHHHhchH-HHHHhCCCCcccccCCCC
Q 000751 1125 LR---WLRNHLGLVQQEPI--IFS-TTIRENIIYAR--HNA-S----EAEVKEAARIANAH-HFISSLPHGYDTHVGMRG 1190 (1303)
Q Consensus 1125 ~~---~lR~~i~~VpQdp~--LF~-gTIreNl~~g~--~~~-~----~~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G 1190 (1303)
.. .+|++|+||||+|. +++ .||.+|+.++. ... + .+++.++++.+++. +...+. .
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----------~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-----------P 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-----------c
Confidence 43 46788999999983 665 59999997531 111 1 13455666666663 333322 3
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCE
Q 000751 1191 VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGR 1268 (1303)
Q Consensus 1191 ~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~ 1268 (1303)
.+||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.++ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 479999999999999999999999999999999999999999999887543 6899999999998764 99999999999
Q ss_pred EEEecChHHHhhc-CchhHH-HHh
Q 000751 1269 IVEEGTHDSLLAK-NGLYVR-LMQ 1290 (1303)
Q Consensus 1269 Ive~Gt~~eLl~~-~g~y~~-l~~ 1290 (1303)
|++.|+++++... ...|.+ ++.
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999865 334544 443
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-70 Score=677.77 Aligned_cols=475 Identities=19% Similarity=0.155 Sum_probs=406.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000751 39 IAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMAT 118 (1303)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~ 118 (1303)
+.++.+++.++..++.+..+.++..++|.++|+|++++|+.+|+++ ++|++++|+++|++.+++++.. ++.++..+++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~ 139 (555)
T TIGR01194 62 LCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAI 139 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHH
Confidence 3445567778888888999999999999999999999999999985 8899999999999999998864 7788888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhH--HHHHHH
Q 000751 119 FFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNET--LAKYSY 196 (1303)
Q Consensus 119 ~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~ 196 (1303)
+++.++++++++|.+++++++.+|+.+++..++.++.++...+.++..+++++.+.|.+.|++++|+|+.++ .+.++|
T Consensus 140 ~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 219 (555)
T TIGR01194 140 FFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAI 219 (555)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHh
Confidence 899999999999999999988888888777777777788888888999999999999999999999999954 557788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 197 ATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQ 276 (1303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (1303)
.+..++..+...+.........++..++..+..++.+++|++. |.+++|.+++++.+...+..|+..+...+..+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~ 296 (555)
T TIGR01194 220 QESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQ 296 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877776665554444433444444444444445555543 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCC--CC-C-CCCC-----CCCCCCccEEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECC
Q 000751 277 GRIAAYRLYEMISRSSS--TT-N-YDGN-----TLPSVHGNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGR 345 (1303)
Q Consensus 277 ~~~a~~ri~~~l~~~~~--~~-~-~~~~-----~~~~~~~~i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~ 345 (1303)
++++++|+.++++.+.+ .. + .+.. ......+.|+++||+|+|++.+ ++++|+|+||++++||++|||||
T Consensus 297 a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~ 376 (555)
T TIGR01194 297 AQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGE 376 (555)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECC
Confidence 99999999999753211 11 0 1000 0111235799999999997431 23699999999999999999999
Q ss_pred CCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcc
Q 000751 346 NGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425 (1303)
Q Consensus 346 sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~ 425 (1303)
||||||||+++|+|+|+|++|+|.+||.|+++++.+++|++|+||+||+++|++|+++|+ ..++++++++++++.+++
T Consensus 377 sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l 454 (555)
T TIGR01194 377 NGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEI 454 (555)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999999999995 346788999999999999
Q ss_pred hHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEec
Q 000751 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD-LL-MLGRSTIIIAR 503 (1303)
Q Consensus 426 ~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~ith 503 (1303)
++++..+|+||||. .+|||||||||+||||++++|+|||||||||+||+++++.+.+.+. .. .+++|+|+|||
T Consensus 455 ~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH 529 (555)
T TIGR01194 455 ADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH 529 (555)
T ss_pred chhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 99999999999995 7899999999999999999999999999999999999999988764 33 46899999999
Q ss_pred CCccccccCEEEEEeCceEeec
Q 000751 504 RLSLIRNADYIAVMDEGRLFEM 525 (1303)
Q Consensus 504 ~~~~~~~~d~i~~l~~G~i~~~ 525 (1303)
|+++++.||+|++|++|++++.
T Consensus 530 ~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 530 DDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred cHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-72 Score=687.60 Aligned_cols=462 Identities=21% Similarity=0.346 Sum_probs=353.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCeecCCCCHHH-Hh
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENIKNLKLEW-LR 384 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~~ 384 (1303)
-|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 489999999994 35799999999999999999999999999999999999996 8999999999998776543 46
Q ss_pred cceEEEeccccccc-HhHHHHHhcCCC------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
+.|+||+|++.+|. .|++||+.++.. .+.++..+. +.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998875 699999998742 122222111 12233333 34334445567899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhcC
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
||||+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 999999999999999999999999999999998874 5789999999999886 4999999999999876542111000
Q ss_pred hhHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCCCCCCCCCCCCCCC
Q 000751 536 DLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVLSP 615 (1303)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (1303)
T Consensus 234 -------------------------------------------------------------------------------- 233 (506)
T PRK13549 234 -------------------------------------------------------------------------------- 233 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCcccccccccccCCCCC
Q 000751 616 PSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPHSH 695 (1303)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1303)
T Consensus 234 -------------------------------------------------------------------------------- 233 (506)
T PRK13549 234 -------------------------------------------------------------------------------- 233 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Q 000751 696 SDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWC 775 (1303)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1303)
.. +..+
T Consensus 234 ----------------------~~-----------------------------------~~~~----------------- 239 (506)
T PRK13549 234 ----------------------DI-----------------------------------ITMM----------------- 239 (506)
T ss_pred ----------------------HH-----------------------------------HHHh-----------------
Confidence 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHH
Q 000751 776 LIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIF 855 (1303)
Q Consensus 776 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~ 855 (1303)
+.. +.
T Consensus 240 -----------------------------------------------~~~---~~------------------------- 244 (506)
T PRK13549 240 -----------------------------------------------VGR---EL------------------------- 244 (506)
T ss_pred -----------------------------------------------hCc---Cc-------------------------
Confidence 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 000751 856 IQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKV 935 (1303)
Q Consensus 856 i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~ 935 (1303)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000751 936 MELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAP 1015 (1303)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1015 (1303)
.
T Consensus 245 -----------------------------------------------------~-------------------------- 245 (506)
T PRK13549 245 -----------------------------------------------------T-------------------------- 245 (506)
T ss_pred -----------------------------------------------------c--------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCCh
Q 000751 1016 YILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGK 1095 (1303)
Q Consensus 1016 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGK 1095 (1303)
...+..... + ....|+++||+++|+.....++|+|+||+|++||++||+|+|||||
T Consensus 246 ----------------~~~~~~~~~------~--~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGK 301 (506)
T PRK13549 246 ----------------ALYPREPHT------I--GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGR 301 (506)
T ss_pred ----------------ccccccccC------C--CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCH
Confidence 000000000 0 0114899999999953212359999999999999999999999999
Q ss_pred HHHHHHHhcccc-CCccEEEECCeeCCCCCH-HHhhcceEEEccCC---ccCc-ccHHHHHHcCCC-C------CCHHHH
Q 000751 1096 STIISLIERFYD-PVAGQVLLDGRDLKLYNL-RWLRNHLGLVQQEP---IIFS-TTIRENIIYARH-N------ASEAEV 1162 (1303)
Q Consensus 1096 STL~~lL~rl~~-~~~G~I~idG~di~~~~~-~~lR~~i~~VpQdp---~LF~-gTIreNl~~g~~-~------~~~~ei 1162 (1303)
|||+++|.|+++ |++|+|.++|.++...+. +.+|++++||||+| .+|+ .|+.||+.++.. . .+.++.
T Consensus 302 STLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 381 (506)
T PRK13549 302 TELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE 381 (506)
T ss_pred HHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH
Confidence 999999999999 599999999999875543 45677899999996 3564 699999986421 0 111111
Q ss_pred HHHHHHhchHHHHHhCCCCccc-ccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC
Q 000751 1163 KEAARIANAHHFISSLPHGYDT-HVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG 1241 (1303)
Q Consensus 1163 ~~al~~a~l~~~I~~lp~Gldt-~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~ 1241 (1303)
. ..+.+.++.+ |++. ........||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++.+.
T Consensus 382 ~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 454 (506)
T PRK13549 382 L-----KTILESIQRL--KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454 (506)
T ss_pred H-----HHHHHHHHhc--CccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence 1 1123334433 2321 123334589999999999999999999999999999999999999999999987655
Q ss_pred CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHh
Q 000751 1242 NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1242 ~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
++|||+|||+++.+. .||++++|++|+++..|+++++.
T Consensus 455 g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 455 GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 799999999999875 59999999999999999988764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=615.42 Aligned_cols=512 Identities=23% Similarity=0.299 Sum_probs=446.9
Q ss_pred hHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHH
Q 000751 14 KFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQ 93 (1303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr 93 (1303)
.+-|++....+....+. +.++.+++.++..++.+++.....+++.++-..+...+|...++.+.... ..|+=..
T Consensus 48 QVyDRVL~S~s~~TLv~-Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~----~~g~~~Q- 121 (580)
T COG4618 48 QVYDRVLPSRSVPTLVM-LTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR----GSGDGLQ- 121 (580)
T ss_pred HHHhhhccCCCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc----CCCcccc-
Confidence 44455554433322222 22233333444556778888888899999999999999999987777643 2243333
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 94 VLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIA 173 (1303)
Q Consensus 94 ~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1303)
..+|.++++.|++..-+..+.+.-.+.+.++++|.+.++++++.++...+++.+.++-.+..++-.++..+...+.+...
T Consensus 122 ~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~ 201 (580)
T COG4618 122 PLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLA 201 (580)
T ss_pred chhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 35899999999998766666666566777888999999999998888878777777777778888888888888999999
Q ss_pred HHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHH
Q 000751 174 EQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTA 253 (1303)
Q Consensus 174 ~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~ 253 (1303)
+-...+.++|++.|......++|.+.+..+...+.+.+-..+.+..+.-.+-+.....++.+|+|++++|++|+|.+++.
T Consensus 202 ~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~ 281 (580)
T COG4618 202 DATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAG 281 (580)
T ss_pred HHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHH
Confidence 99999999999999999999999999999998888888777777777777777778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEE
Q 000751 254 LFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLT 333 (1303)
Q Consensus 254 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~ 333 (1303)
...+.....|+...+..|.++..++.|.+|+.+++...+...+ ..+.|..++.+.++++++.-|+ .++++|+||||+
T Consensus 282 SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~--~m~LP~P~g~L~Ve~l~~~PPg-~~~pil~~isF~ 358 (580)
T COG4618 282 SILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE--RMPLPAPQGALSVERLTAAPPG-QKKPILKGISFA 358 (580)
T ss_pred HHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC--CCCCCCCCceeeEeeeeecCCC-CCCcceecceeE
Confidence 8888888999999999999999999999999999987665432 2345666789999999998765 467999999999
Q ss_pred eeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHh-cCCCCC
Q 000751 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIA-YGRDAT 412 (1303)
Q Consensus 334 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~-~~~~~~ 412 (1303)
+++|+.++||||||||||||.++|.|.++|.+|.|++||-|+++++.+.+-++|||.||+..||+|||+|||+ |+++.+
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d 438 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEAD 438 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 777999
Q ss_pred HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 000751 413 LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492 (1303)
Q Consensus 413 ~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~ 492 (1303)
++.+.+|++.++.||.|.+||+||||.||+.|..|||||||||+||||+|.||.+++||||-|+||.+-|+.+.++|...
T Consensus 439 ~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~ 518 (580)
T COG4618 439 PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA 518 (580)
T ss_pred HHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred c-CCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhc
Q 000751 493 M-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 493 ~-~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
+ +|.|+|+||||++.+..+|+|.+|++|++...|+.+|.+++
T Consensus 519 k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 519 KARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 5 69999999999999999999999999999999999998764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-70 Score=610.06 Aligned_cols=528 Identities=22% Similarity=0.279 Sum_probs=461.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 000751 739 IFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRN 818 (1303)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~ 818 (1303)
+...+....+.++-++.|....+. ..+.+.....+.+++.++..++.+++...+.+++.++..+++..+|...++.
T Consensus 34 ~INiL~L~~~lyMLQVyDRVL~S~----s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~ 109 (580)
T COG4618 34 VINLLALTGPLYMLQVYDRVLPSR----SVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSA 109 (580)
T ss_pred HHHHHHHhhhHHHHHHHhhhccCC----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 333333344444555556555433 1233444555666667778888999999999999999999999999999876
Q ss_pred CccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 819 EVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWL 898 (1303)
Q Consensus 819 ~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~ 898 (1303)
+..-- ..|+= ...-+|.+.++.+++..-...+.+....-+.++++|.+++++++++++...+++.+.++.....
T Consensus 110 ~l~~~-----~~g~~-~Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t 183 (580)
T COG4618 110 PLLRR-----GSGDG-LQPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERAT 183 (580)
T ss_pred HHhhc-----CCCcc-ccchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65421 22211 1234799999999998877888888888888999999999999999999988888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 899 AGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWY 978 (1303)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1303)
++-.++..+....++..+..+.+|.++|+++|+.....++|.+....+.......+-..+...+++..+-++....++..
T Consensus 184 ~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~ 263 (580)
T COG4618 184 RKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGL 263 (580)
T ss_pred hccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777778888889999999999999999999999999998888888777777777888888999999999999999
Q ss_pred HhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEe
Q 000751 979 TGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKN 1058 (1303)
Q Consensus 979 ~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~ 1058 (1303)
|++++..|++|.|.+++..+...-+..++-..+..+..+..++.++.|+.+++...|...+ ..+.|.+.|.+.+++
T Consensus 264 GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~ 339 (580)
T COG4618 264 GAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVER 339 (580)
T ss_pred ceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEee
Confidence 9999999999999999888888888888888889999999999999999999987654332 244556789999999
Q ss_pred eEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccC
Q 000751 1059 VDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQE 1138 (1303)
Q Consensus 1059 Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQd 1138 (1303)
+++.-|+.+ +|+|+|+||+++|||-+||+||||||||||.++|.|.++|.+|.|++||.|+++++.+++-++|||.|||
T Consensus 340 l~~~PPg~~-~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQd 418 (580)
T COG4618 340 LTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQD 418 (580)
T ss_pred eeecCCCCC-CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccc
Confidence 999877654 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000751 1139 PIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE 1218 (1303)
Q Consensus 1139 p~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDE 1218 (1303)
..||+|||+|||+-+.++.+++.|.+|++.++.||.|.++|+||||.||++|..|||||||||+|||||+.+|++++|||
T Consensus 419 VeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDE 498 (580)
T COG4618 419 VELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE 498 (580)
T ss_pred ceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecC
Confidence 99999999999987777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1219 ASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1219 aTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|-|+||.+-|+.+.++|.+.+++|+|+|+||||.+.+..+|+|+||++|++..+|+-+|.+++
T Consensus 499 PNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 499 PNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999988889999999999999999999999999999999999999876
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-69 Score=666.68 Aligned_cols=534 Identities=17% Similarity=0.152 Sum_probs=423.5
Q ss_pred HHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 716 FWRLAELSF-AEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHF 794 (1303)
Q Consensus 716 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 794 (1303)
+++++.+.+ +.++.++++++...+.+......+++++.+++..... ... ....++++.++..++.++..+
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL------GQG---SLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------cch---HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 6666666666666666666666666666555421100 000 112233445556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 795 YFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEW 874 (1303)
Q Consensus 795 ~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~ 874 (1303)
+....+.++..++|.++|++++++|+.||++ .++|++++|+++|++.++..+.. +..++..++.++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999999999999985 68999999999999999998864 66777778888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH--HHHHHHHHHHHHHHHHHHH
Q 000751 875 RLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGN--KVMELYRLQLKKIFTKSFL 952 (1303)
Q Consensus 875 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~--~~~~~~~~~~~~~~~~~~~ 952 (1303)
.+++++++.+|+.++.........++..++.++...+.+..+.|.+.|++++|+|+.++ ...+++.+..++..+....
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988888877666555555555566667777888899999999999999999843 5567777777776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 000751 953 HGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIID 1032 (1303)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 1032 (1303)
..........+..++..+..++.+++++.. +.+++++++....+......++.........+.++..+++|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444443333444444444444445555443 67899988877777777777888888888889999999999999875
Q ss_pred cCCC--CCCCCC--CCC---CCCCCcccEEEEeeEEECCCCC--CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHh
Q 000751 1033 RVPK--IDPDDS--SAV---KPPNVYGSIELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIE 1103 (1303)
Q Consensus 1033 ~~~~--~~~~~~--~~~---~~~~~~g~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~ 1103 (1303)
.... ..++.+ ... ++....+.|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3211 110001 000 1112346899999999997532 236999999999999999999999999999999999
Q ss_pred ccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcc
Q 000751 1104 RFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYD 1183 (1303)
Q Consensus 1104 rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gld 1183 (1303)
|+|+|++|+|.+||.|+++++.+++|++++||+|||++|++|+++|+ .++.++++++++++.++++++++.+|+|+|
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 99999999999999999999999999999999999999999999995 356789999999999999999999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhhcCCcEEEEEecCchhHhhcCEEE
Q 000751 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALD-TLIMGNKTTILIAHRAAMMRHVDNIV 1262 (1303)
Q Consensus 1184 t~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~-~~~~~~~TvI~IaHrl~ti~~~D~Ii 1262 (1303)
|. .+|||||||||+||||++++|+|||||||||+||+++|+.+++.+. ....+++|+|+||||++++..||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 95 6899999999999999999999999999999999999999998764 33334699999999999999999999
Q ss_pred EEeCCEEEEe
Q 000751 1263 VLNGGRIVEE 1272 (1303)
Q Consensus 1263 vl~~G~Ive~ 1272 (1303)
||++|+|+|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999974
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-71 Score=683.57 Aligned_cols=217 Identities=26% Similarity=0.426 Sum_probs=179.7
Q ss_pred cEEEEeeEEECCCC--------CCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC
Q 000751 1053 SIELKNVDFCYPSR--------PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN 1124 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~--------~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~ 1124 (1303)
.|+++||+++|+.. ...++|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+|++||.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 48999999999621 12359999999999999999999999999999999999995 8999999999998776
Q ss_pred HHH---hhcceEEEccCC--ccCc-ccHHHHHHcCCC----CCC----HHHHHHHHHHhchH-HHHHhCCCCcccccCCC
Q 000751 1125 LRW---LRNHLGLVQQEP--IIFS-TTIRENIIYARH----NAS----EAEVKEAARIANAH-HFISSLPHGYDTHVGMR 1189 (1303)
Q Consensus 1125 ~~~---lR~~i~~VpQdp--~LF~-gTIreNl~~g~~----~~~----~~ei~~al~~a~l~-~~I~~lp~Gldt~vge~ 1189 (1303)
... +|++++||||+| .+|+ .|++||+.++.. ..+ ++++.++++..++. +.. ...
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETR-----------HRY 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHH-----------hcC
Confidence 543 578899999998 3665 599999986421 011 12344555555543 222 223
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCC
Q 000751 1190 GVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGG 1267 (1303)
Q Consensus 1190 G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G 1267 (1303)
..+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+. .||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 3489999999999999999999999999999999999999999999987543 689999999999876 59999999999
Q ss_pred EEEEecChHHHhhc
Q 000751 1268 RIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1268 ~Ive~Gt~~eLl~~ 1281 (1303)
+|++.|+++++++.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999864
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=697.88 Aligned_cols=215 Identities=23% Similarity=0.372 Sum_probs=186.7
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcc
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 386 (1303)
..|+++|+++.|++ +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|+.
T Consensus 927 ~~L~I~nLsK~y~~-~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecC-CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 36999999999952 24579999999999999999999999999999999999999999999999999875 45667889
Q ss_pred eEEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
||||+|++.+|. .|++|||.++. .... +++.+.++..+ ++........+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vg-----------L~~~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTG-----------LHHKRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHHHH
Confidence 999999999886 69999998752 2222 23344444443 34444556678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|||+.+|+|+|||||||+||+.+++.+.+.|+++.+|+|+|++||+++.+. .||||++|++|++++.|+.++|.++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999888999999999999986 4999999999999999999999765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=676.11 Aligned_cols=212 Identities=24% Similarity=0.378 Sum_probs=174.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH-Hhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 386 (1303)
-|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 489999999994 346999999999999999999999999999999999999999999999999998877654 3467
Q ss_pred eEEEeccccccc-HhHHHHHhcCCC-C---------CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGRD-A---------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~~-~---------~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
|+||+|++.++. .|++||+.++.. . +.++..+ .+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 999999998876 599999987631 0 1111111 112222322 333334455568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChH
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~ 529 (1303)
+|||||+.+|+||||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 99999999999999999999999999999999998874 4799999999999986 59999999999998766543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-70 Score=676.00 Aligned_cols=223 Identities=23% Similarity=0.389 Sum_probs=177.4
Q ss_pred cEEEEeeEEECCC--CCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEEC-Ce---eCCCCC--
Q 000751 1053 SIELKNVDFCYPS--RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLD-GR---DLKLYN-- 1124 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~--~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~id-G~---di~~~~-- 1124 (1303)
.|+++||+++|++ ....++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++ |. ++...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4899999999963 112359999999999999999999999999999999999999999999996 64 334333
Q ss_pred -HHHhhcceEEEccCCccCc-ccHHHHHHcCCC-CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1125 -LRWLRNHLGLVQQEPIIFS-TTIRENIIYARH-NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1125 -~~~lR~~i~~VpQdp~LF~-gTIreNl~~g~~-~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
...+|++++||||++.+|+ .|++||+.++.. ... ++++.++++..++.+. ..+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHHH
Confidence 2356778999999998887 499999975321 111 1234445555554210 00001222344799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecCh
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
|||++|||||+.+|+||||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999887543 689999999999876 4999999999999999999
Q ss_pred HHHhhc
Q 000751 1276 DSLLAK 1281 (1303)
Q Consensus 1276 ~eLl~~ 1281 (1303)
+++.++
T Consensus 513 ~~~~~~ 518 (520)
T TIGR03269 513 EEIVEE 518 (520)
T ss_pred HHHHhh
Confidence 988653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-70 Score=672.18 Aligned_cols=210 Identities=23% Similarity=0.377 Sum_probs=172.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH-Hhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 386 (1303)
-|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 389999999994 357999999999999999999999999999999999999999999999999987655443 4678
Q ss_pred eEEEeccccccc-HhHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGRD-------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
|+||+|++.++. .|++||+.++.. .+.++.++. +.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998875 699999998642 112221111 12223332 333333445568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccC
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~ 527 (1303)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999998764 4789999999999886 599999999999987553
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=680.94 Aligned_cols=500 Identities=22% Similarity=0.285 Sum_probs=421.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000751 35 YIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIH 114 (1303)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~ 114 (1303)
.+.+++++..++..++.+.+...+-+..+.|..++++++++.|+.|||. .++|.|+||++.|++.++.-+...+..++.
T Consensus 863 vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~ 941 (1381)
T KOG0054|consen 863 VYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLEFFLQ 941 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHHHHHH
Confidence 3444555666667778888888899999999999999999999999999 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHhchhH
Q 000751 115 NMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQD----AYAEAASIAEQAVSYIRTLYAFTNET 190 (1303)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~~ik~~~~e~ 190 (1303)
.++.+++.++++.+..|++.++++ |+.+ +.+++.++..+.+++..+ ..+-..+++.|+++|+.+||+|+.++
T Consensus 942 ~~~~~l~~~~vi~~~~P~fli~~~---pl~v-~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~ 1017 (1381)
T KOG0054|consen 942 SLLNVLGILVVISYVTPWFLIAII---PLGV-IYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEE 1017 (1381)
T ss_pred HHHHHHHHHHHhhHHhHHHHHHHH---HHHH-HHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccH
Confidence 999999999999888887766554 3332 233344444444443332 33455689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC-ccHHHHHHHHHHHHHHHHHHHHHH
Q 000751 191 LAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVT-HNK-AHGGEIVTALFAVILSGLGLNQAA 268 (1303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~-~~~g~l~~~~~~~~~~~~~l~~~~ 268 (1303)
++.+++....+...+..+.......|...-..++..+....+ +...+. .+. .++|.+-..+.|.+.+...+..+.
T Consensus 1018 rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~---al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~v 1094 (1381)
T KOG0054|consen 1018 RFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIA---ALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLV 1094 (1381)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777766554444444333333333322222 222222 222 678888888889988888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCC-CCCC-CCC--CCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEEC
Q 000751 269 TNFYSFDQGRIAAYRLYEMISRSSSTTN-YDGN-TLP--SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVG 344 (1303)
Q Consensus 269 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~-~~~~-~~~--~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG 344 (1303)
.....+.....|.+|+.+..+.+++.+. .+.. +++ |.+|.|+|+|++.+|.+ +.++|||||||+|+|||+++|||
T Consensus 1095 R~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp-~lp~VLk~is~~I~p~eKVGIVG 1173 (1381)
T KOG0054|consen 1095 RQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRP-NLPLVLKGISFTIKPGEKVGIVG 1173 (1381)
T ss_pred HHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCC-CCcchhcCceEEEcCCceEEEeC
Confidence 9999999999999999999986655111 1111 111 35789999999999964 34689999999999999999999
Q ss_pred CCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhc
Q 000751 345 RNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAH 424 (1303)
Q Consensus 345 ~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~ 424 (1303)
++|||||||++.|-|+.+|.+|+|.|||+|+.++.+.+||++++++||||.||+||+|.|+.--++++|+++|+|++.|+
T Consensus 1174 RTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~ 1253 (1381)
T KOG0054|consen 1174 RTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQ 1253 (1381)
T ss_pred CCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred chHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC
Q 000751 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504 (1303)
Q Consensus 425 ~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~ 504 (1303)
+.+++.++|.|+|+.|.|+|.|+|-||||-+||||||+|+++||+||||||++|++|...||+.|++..+++|||.|+||
T Consensus 1254 Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHR 1333 (1381)
T KOG0054|consen 1254 LKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHR 1333 (1381)
T ss_pred hHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCEEEEEeCceEeeccChHHHhhc-ChhHHHHHH
Q 000751 505 LSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLK 543 (1303)
Q Consensus 505 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 543 (1303)
++++-++|||+|||+|+|+|.|+|.+|+++ ++.|+++..
T Consensus 1334 l~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1334 LNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred cchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 999999999999999999999999999987 566665544
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-69 Score=666.66 Aligned_cols=210 Identities=26% Similarity=0.401 Sum_probs=179.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHh-cc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR-SQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~-~~ 386 (1303)
.|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 499999999995 35699999999999999999999999999999999999999999999999999877766554 57
Q ss_pred eEEEeccccccc-HhHHHHHhcCCCCC---HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhc
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGRDAT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~ 462 (1303)
|+||+|++.++. .|++||+.++.... ++++.++++..++ +........+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGC-----------QLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCC-----------CccccCChhhCCHHHHHHHHHHHHHH
Confidence 999999998886 59999999875211 2334444444443 22334455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 463 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999999998874 5799999999999886 5999999999999988876654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=667.98 Aligned_cols=215 Identities=17% Similarity=0.317 Sum_probs=173.6
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-CccEEEECCeeCCCCCH-HHhhc
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-VAGQVLLDGRDLKLYNL-RWLRN 1130 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-~~G~I~idG~di~~~~~-~~lR~ 1130 (1303)
.|+++|++++|+......+|+|+||+|++||++||+|+||||||||+++|.|+++| .+|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999532123599999999999999999999999999999999999995 89999999999875443 56788
Q ss_pred ceEEEccCC---ccCc-ccHHHHHHcCCCC-------CCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCCh
Q 000751 1131 HLGLVQQEP---IIFS-TTIRENIIYARHN-------ASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1131 ~i~~VpQdp---~LF~-gTIreNl~~g~~~-------~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
+++||||++ .+|+ .|+++|+.++... ... +++.++++..++.+ .-.+..+ ..|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFLPI----GRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccCcc----ccCCH
Confidence 999999996 4665 5999999875210 111 12333343333210 0123333 47999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecC
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt 1274 (1303)
|||||++||||++++|++|||||||++||+.+.+.+++.|+++...+.|+|+|||+++.+. .||+|++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 9999999999999999999999999999999999999999887655789999999999876 599999999999998776
Q ss_pred hHH
Q 000751 1275 HDS 1277 (1303)
Q Consensus 1275 ~~e 1277 (1303)
..+
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=667.41 Aligned_cols=207 Identities=22% Similarity=0.371 Sum_probs=172.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH-HHHhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 386 (1303)
.|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 489999999995 3469999999999999999999999999999999999999999999999999875543 456788
Q ss_pred eEEEeccccccc-HhHHHHHhcCCC------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
|+||+|++.+|. .|++||+.++.. .+..+..+. +.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE-----AREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHH-----HHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 999999998886 599999998631 122221111 12233333 3333334456689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceEee
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~ 524 (1303)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999998774 57999999999998864 99999999999875
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-67 Score=701.35 Aligned_cols=213 Identities=23% Similarity=0.398 Sum_probs=182.4
Q ss_pred cEEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCCHHHh
Q 000751 1053 SIELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD---PVAGQVLLDGRDLKLYNLRWL 1128 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~l 1128 (1303)
.++++||+++|+.++ ..++|+|||++|+|||++||+||||||||||+++|.|+.+ |++|+|++||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 378999999996322 3469999999999999999999999999999999999998 68899999999985 257
Q ss_pred hcceEEEccCCcc-CcccHHHHHHcCC----C-CCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1129 RNHLGLVQQEPII-FSTTIRENIIYAR----H-NASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1129 R~~i~~VpQdp~L-F~gTIreNl~~g~----~-~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
|++++||||++.+ +..||||||.++. + ..+++ .+.++++..++. +-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 8999999998764 5679999998742 1 22333 345566665553 3468999988889999999
Q ss_pred HHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH--hhcCEEEEEeCC-EEEEecC
Q 000751 1199 QRIAIARVVLKNAP-ILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM--RHVDNIVVLNGG-RIVEEGT 1274 (1303)
Q Consensus 1199 QRlaLARAllr~p~-ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti--~~~D~Iivl~~G-~Ive~Gt 1274 (1303)
||++|||||+.+|+ ||+||||||+||+.+...|++.|++..++++|||+++|+++.. ..||+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 9999999999999999999999998866679999999999863 679999999997 9999999
Q ss_pred hH
Q 000751 1275 HD 1276 (1303)
Q Consensus 1275 ~~ 1276 (1303)
+.
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 74
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=579.63 Aligned_cols=469 Identities=27% Similarity=0.417 Sum_probs=365.2
Q ss_pred cEEEEEEEEEcCC-CCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCCCCHH
Q 000751 308 NIEFRNVYFSYLS-RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLKLE 381 (1303)
Q Consensus 308 ~i~~~~v~f~y~~-~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~ 381 (1303)
-++++|+|..|.. .+...++++|||.|++||++||||+||||||--++.++|+++. -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4788998888852 2345799999999999999999999999999999999999865 379999999999999988
Q ss_pred HHhc----ceEEEeccccc-cc------HhHHHHHhcCC----CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCC
Q 000751 382 WLRS----QIGLVTQEPAL-LS------LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (1303)
Q Consensus 382 ~~~~----~i~~v~Q~~~l-~~------~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~ 446 (1303)
.+|+ +|++++|||.- .| .-|.|-|.+-+ .+-.+++.+.++.+++.+--. .+..-...
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 8875 79999999952 12 24555565543 233456666677776643211 22333457
Q ss_pred CChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccc-cCEEEEEeCceEe
Q 000751 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLF 523 (1303)
Q Consensus 447 LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~ 523 (1303)
||||||||+.||-||..+|++||-||||.|||.....+|.+.|+++. .|..+++|||++..++. ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999998875 48999999999999986 9999999999999
Q ss_pred eccChHHHhhcCh-hHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCC
Q 000751 524 EMGTHDELLATGD-LYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDG 602 (1303)
Q Consensus 524 ~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1303)
|.|+.+++.+... .|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L------------------------------------------------------------ 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL------------------------------------------------------------ 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH------------------------------------------------------------
Confidence 9998777654310 010000
Q ss_pred CCCCCCCCCCCCCchhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCccc
Q 000751 603 AFDSQESPKVLSPPSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNE 682 (1303)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1303)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCCCCCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000751 683 RSHSQTFSRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPE 762 (1303)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1303)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHH
Q 000751 763 ERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDAT 842 (1303)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~ 842 (1303)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000751 843 FVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRN 922 (1303)
Q Consensus 843 ~i~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g 922 (1303)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHH
Q 000751 923 IYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSF 1002 (1303)
Q Consensus 923 i~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~ 1002 (1303)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCC--------Ccceeee
Q 000751 1003 ATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRP--------EVLVLSN 1074 (1303)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~--------~~~vL~~ 1074 (1303)
++.+|.-.+. ..+....--++.+||...||-++ ...++++
T Consensus 258 ----------------------------l~aeP~g~~~----p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~ 305 (534)
T COG4172 258 ----------------------------LAAEPSGDPP----PLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDG 305 (534)
T ss_pred ----------------------------HhcCCCCCCC----CCCCCCCceEEecceEEEEecCCccccccchheEEecc
Confidence 0000100000 00001112355666666664211 1358999
Q ss_pred eeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH---hhcceEEEccCCc--cC-cccHHH
Q 000751 1075 FSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW---LRNHLGLVQQEPI--IF-STTIRE 1148 (1303)
Q Consensus 1075 isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR~~i~~VpQdp~--LF-~gTIre 1148 (1303)
|||+.++||++||||+|||||||+-.+|+|+.++. |+|.++|.||..++.+. +|+++-+|+|||+ |= ..||.+
T Consensus 306 isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~q 384 (534)
T COG4172 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384 (534)
T ss_pred ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHH
Confidence 99999999999999999999999999999999875 99999999999998764 6899999999996 22 247766
Q ss_pred HHHcC----CCCCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCC
Q 000751 1149 NIIYA----RHNAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220 (1303)
Q Consensus 1149 Nl~~g----~~~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaT 1220 (1303)
-|.=| .|..+ ++.+.+|++.+|++.-... .-...+|||||||||||||++-+|++++|||||
T Consensus 385 II~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPT 454 (534)
T COG4172 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPT 454 (534)
T ss_pred HhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCc
Confidence 66433 23333 4568888998888654321 123479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhhc-CchhHH
Q 000751 1221 SSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK-NGLYVR 1287 (1303)
Q Consensus 1221 SaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~~-~g~y~~ 1287 (1303)
||||.-.+++|.+.++++.+ .+-+-++|+|+|..++. ||+|+||.+|+|||+|+-++++++ +..|.+
T Consensus 455 SALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 455 SALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 99999999999999997643 25699999999999875 999999999999999999999987 445654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=657.02 Aligned_cols=208 Identities=23% Similarity=0.266 Sum_probs=176.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++|+|+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLS---DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcC---CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 88999999995 346999999999999999999999999999999999999999999999998887777677778899
Q ss_pred EEeccccc---------ccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 389 LVTQEPAL---------LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 389 ~v~Q~~~l---------~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
|++|++.+ +..|+++|+.++.. .++++.++++..++.+. .......||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHHH
Confidence 99998753 24689999876421 23445555655555433 33445689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHH
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||+.+|++|||||||++||+++.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999998874 47899999999998865 999999999999988876654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=655.73 Aligned_cols=207 Identities=24% Similarity=0.341 Sum_probs=172.2
Q ss_pred EEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH-HHHhcceEE
Q 000751 311 FRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQIGL 389 (1303)
Q Consensus 311 ~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~ 389 (1303)
++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+++.++|
T Consensus 1 ~~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 368999995 3469999999999999999999999999999999999999999999999999876554 446778999
Q ss_pred Eecccccc-cHhHHHHHhcCCC------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhc
Q 000751 390 VTQEPALL-SLSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (1303)
Q Consensus 390 v~Q~~~l~-~~ti~~ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~ 462 (1303)
|+|++.++ ..|++||+.++.. .+.++..+. +.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 99999876 4699999997641 122222111 22333333 4444455667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccC
Q 000751 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (1303)
Q Consensus 463 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~ 527 (1303)
++|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999998864 5799999999999886 599999999999987654
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-67 Score=646.29 Aligned_cols=203 Identities=20% Similarity=0.345 Sum_probs=173.3
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|. +++
T Consensus 319 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 59999999999643 4999999999999999999999999999999999999999999999983 579
Q ss_pred EEEccCCc--cCc-ccHHHHHHcCC-CCCCHHHHHHHHHHhchH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHH
Q 000751 1133 GLVQQEPI--IFS-TTIRENIIYAR-HNASEAEVKEAARIANAH-HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVV 1207 (1303)
Q Consensus 1133 ~~VpQdp~--LF~-gTIreNl~~g~-~~~~~~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAl 1207 (1303)
+||||++. +++ .|+++|+.+.. ....++++.++++..++. +.. + ....+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-------K----KSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-------c----CcccccCHHHHHHHHHHHHH
Confidence 99999984 443 69999997532 222345667777777662 222 2 22348999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEE-EecChHHHhhcCc
Q 000751 1208 LKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIV-EEGTHDSLLAKNG 1283 (1303)
Q Consensus 1208 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Iv-e~Gt~~eLl~~~g 1283 (1303)
+++|+||||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||+|++|++|+++ +.|+++++++.+|
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 9999999999999999999999999999875 3699999999998764 9999999999998 7899999887655
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-65 Score=635.23 Aligned_cols=471 Identities=18% Similarity=0.207 Sum_probs=380.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 44 FAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL 123 (1303)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~ 123 (1303)
+++.+++.++....+.++..++|.+++++++++|+.+|+++ ++|++++|+++|++.+..++. .++.++.+++.+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45667777888888999999999999999999999999995 889999999999999998776 4778888889999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchh---HHHHHHHHHHH
Q 000751 124 AIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE---TLAKYSYATSL 200 (1303)
Q Consensus 124 ~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~ 200 (1303)
+++++++|.+++++++.+|+.+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.++|.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 9999999999999999999988888888888888888889999999999999999999996 4443 34567777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 201 QATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIA 280 (1303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 280 (1303)
++..+...+..........+...+..+..++.+++++.. +..+.+.+..+.++...+..|+..+...+..++.++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665555444433322222222222222233333322 11233333333344444567999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhcc
Q 000751 281 AYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 281 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.+|+.++++.+++.+...... .+..+.|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 296 ~~ri~~l~~~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 296 FNKLNKLALAPYKAEFPRPQA-FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred HHHHHHHhccccccccccccc-cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 999999976543221111111 112347999999999973 34799999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccc
Q 000751 361 YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQV 440 (1303)
Q Consensus 361 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~v 440 (1303)
|+|++|+|.+||+|+++++.+++|++|+||+|||++|++|++|| +.+.++++++++++.+++.+++. .|+|.
T Consensus 373 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~-~~~~~---- 444 (547)
T PRK10522 373 YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE-LEDGR---- 444 (547)
T ss_pred CCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh-ccccC----
Confidence 99999999999999999999999999999999999999999999 45677888888888887776654 24442
Q ss_pred cCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccccCEEEEEe
Q 000751 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMD 518 (1303)
Q Consensus 441 g~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~ 518 (1303)
.+|.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++.++.||+|++|+
T Consensus 445 -~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~ 523 (547)
T PRK10522 445 -ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMR 523 (547)
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEE
Confidence 1488999999999999999999999999999999999999999999887553 4899999999999999999999999
Q ss_pred CceEeec-cChHHHh
Q 000751 519 EGRLFEM-GTHDELL 532 (1303)
Q Consensus 519 ~G~i~~~-g~~~~l~ 532 (1303)
+|++++. |++.+-.
T Consensus 524 ~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 524 NGQLSELTGEERDAA 538 (547)
T ss_pred CCEEEEecCCchhhh
Confidence 9999986 5554433
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-64 Score=623.07 Aligned_cols=475 Identities=17% Similarity=0.243 Sum_probs=367.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 786 VVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVA 865 (1303)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~ 865 (1303)
.++.++..++..+++.++..++|.++|++++++|++||++ +++|++++|+++|++.+...+. .+..++..++.++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~ 138 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGS 138 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4466778888889999999999999999999999999975 6789999999999999998765 466778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcch---HHHHHHHHHH
Q 000751 866 VIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAG---NKVMELYRLQ 942 (1303)
Q Consensus 866 ~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~---~~~~~~~~~~ 942 (1303)
++++++++|.+++++++.+|+.++......+..++..++.++...+....+.|.++|+++++ ++.+ +.+.++|++.
T Consensus 139 ~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~ 217 (547)
T PRK10522 139 AAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPD 217 (547)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHH
Confidence 99999999999999998888877666555555565666777788888899999999999995 4433 4566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000751 943 LKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRK 1022 (1303)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1303)
.++..+...+..........+...+..+..++.+++++... .+.++. .............++.........+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~ 294 (547)
T PRK10522 218 AQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLG-WADTNV--AATYSLTLLFLRTPLLSAVGALPTLLSAQV 294 (547)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554444333333222222222222333333433221 122222 211112222233456666677777888889
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHH
Q 000751 1023 SLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLI 1102 (1303)
Q Consensus 1023 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL 1102 (1303)
+++|+.++.+.+++.+. + .. .+.+..+.|+|+||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++|
T Consensus 295 a~~ri~~l~~~~~~~~~-~-~~-~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll 369 (547)
T PRK10522 295 AFNKLNKLALAPYKAEF-P-RP-QAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL 369 (547)
T ss_pred HHHHHHHHhcccccccc-c-cc-cccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999888654321111 1 11 111123579999999999853 3599999999999999999999999999999999
Q ss_pred hccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCc
Q 000751 1103 ERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGY 1182 (1303)
Q Consensus 1103 ~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gl 1182 (1303)
+|+|+|++|+|++||+|+++++.+.+|++++||||||++|++|+++| + ++.++++++++++.+++.+++.. |+|.
T Consensus 370 ~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 444 (547)
T PRK10522 370 TGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR 444 (547)
T ss_pred hCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC
Confidence 99999999999999999999999999999999999999999999999 3 35678888888888887766642 4442
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhhcCEE
Q 000751 1183 DTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRHVDNI 1261 (1303)
Q Consensus 1183 dt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~~D~I 1261 (1303)
.+|.+||||||||++||||++++|+|||||||||+||+++|+.+.+.+.+..+ .++|+|+||||+++++.||+|
T Consensus 445 -----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i 519 (547)
T PRK10522 445 -----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRL 519 (547)
T ss_pred -----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEE
Confidence 24889999999999999999999999999999999999999999999876542 369999999999999999999
Q ss_pred EEEeCCEEEEe-cChHHHhhcC
Q 000751 1262 VVLNGGRIVEE-GTHDSLLAKN 1282 (1303)
Q Consensus 1262 ivl~~G~Ive~-Gt~~eLl~~~ 1282 (1303)
++|++|+++|. |++.+-..++
T Consensus 520 ~~l~~G~i~e~~~~~~~~~~~~ 541 (547)
T PRK10522 520 LEMRNGQLSELTGEERDAASRD 541 (547)
T ss_pred EEEECCEEEEecCCchhhhhhh
Confidence 99999999987 6666655444
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-65 Score=631.23 Aligned_cols=202 Identities=22% Similarity=0.344 Sum_probs=165.5
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++. .+|
T Consensus 324 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 389 (556)
T PRK11819 324 VIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET-----------VKL 389 (556)
T ss_pred EEEEEeEEEEECCe---eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 59999999999643 4999999999999999999999999999999999999999999999642 169
Q ss_pred EEEccCC-ccCc-ccHHHHHHcCCCC----CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1133 GLVQQEP-IIFS-TTIRENIIYARHN----ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1133 ~~VpQdp-~LF~-gTIreNl~~g~~~----~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
+||||++ .++. .|++||+.++... ..+.+..++++..++.+. ..+.. ...||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~----~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKK----VGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCc----hhhCCHHHHHHHHHHHH
Confidence 9999997 5665 5999999875321 112333444444443210 12233 34799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeC-CEEEE-ecChHHHhhc
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNG-GRIVE-EGTHDSLLAK 1281 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~-G~Ive-~Gt~~eLl~~ 1281 (1303)
++.+|++|||||||++||+.+...+.+.|++. . .|+|+|||+++.+. .||+|++|++ |++.+ .|+++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF--P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999999999999999999886 2 59999999999776 4999999986 88874 7898888765
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=629.07 Aligned_cols=208 Identities=23% Similarity=0.309 Sum_probs=170.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999951 35799999999999999999999999999999999999999999999975 2469
Q ss_pred EEEeccccccc-HhHHHHHhcCCC------------------CCH---------HHHHHHHHHhcchH-------HHHhc
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGRD------------------ATL---------DQIEEAAKIAHAHT-------FISSL 432 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~~------------------~~~---------~~~~~~~~~~~~~~-------~i~~l 432 (1303)
|||+|+|+++. .|++||+.++.. ..+ .++.++++.++.++ .++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 699999987521 001 12444444444332 22222
Q ss_pred ccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-c
Q 000751 433 EKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-A 511 (1303)
Q Consensus 433 ~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~ 511 (1303)
|++ .......+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 134556789999999999999999999999999999999999999999999876 3699999999999875 9
Q ss_pred CEEEEEeCceEe-eccChHHHhh
Q 000751 512 DYIAVMDEGRLF-EMGTHDELLA 533 (1303)
Q Consensus 512 d~i~~l~~G~i~-~~g~~~~l~~ 533 (1303)
|+|++|++|+++ ..|+++++.+
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6788877653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-63 Score=657.41 Aligned_cols=215 Identities=21% Similarity=0.406 Sum_probs=179.8
Q ss_pred ccEEEEeeEEECCCC----------CCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC--CccEEEECCee
Q 000751 1052 GSIELKNVDFCYPSR----------PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP--VAGQVLLDGRD 1119 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~----------~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~--~~G~I~idG~d 1119 (1303)
..+.|+||++..+.. ....+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999997521 123699999999999999999999999999999999999874 68999999988
Q ss_pred CCCCCHHHhhcceEEEccCCccCc-ccHHHHHHcCC----C-CCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCC
Q 000751 1120 LKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYAR----H-NASEA----EVKEAARIANAHHFISSLPHGYDTHVGMR 1189 (1303)
Q Consensus 1120 i~~~~~~~lR~~i~~VpQdp~LF~-gTIreNl~~g~----~-~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~ 1189 (1303)
+.+ ..+|+.++||+|++.+++ .||+|||.++. + ..+++ .+.++++..++.+. .|+.+|..
T Consensus 946 ~~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~ 1015 (1470)
T PLN03140 946 KKQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLP 1015 (1470)
T ss_pred CCh---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCC
Confidence 643 456788999999998876 59999998642 1 22332 25566666666442 46777754
Q ss_pred C-CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchh--HhhcCEEEEEeC
Q 000751 1190 G-VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAM--MRHVDNIVVLNG 1266 (1303)
Q Consensus 1190 G-~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~t--i~~~D~Iivl~~ 1266 (1303)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++....++|||+++|+++. ...||++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 4 5799999999999999999999999999999999999999999999987667999999999984 577999999996
Q ss_pred -CEEEEecChH
Q 000751 1267 -GRIVEEGTHD 1276 (1303)
Q Consensus 1267 -G~Ive~Gt~~ 1276 (1303)
|++++.|+..
T Consensus 1096 gG~~v~~G~~~ 1106 (1470)
T PLN03140 1096 GGQVIYSGPLG 1106 (1470)
T ss_pred CCEEEEECCcc
Confidence 8999999864
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-63 Score=618.46 Aligned_cols=201 Identities=20% Similarity=0.373 Sum_probs=166.3
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++. ++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~~---~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGDR---IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 59999999999642 5999999999999999999999999999999999999999999999741 269
Q ss_pred EEEccCC--ccCc-ccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1133 GLVQQEP--IIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1133 ~~VpQdp--~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
+|++|++ .++. .|+.+++....+...++++.+.++..++.+. -.+.++ ..||||||||++||||+++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~~----~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD------KVTEET----RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh------HhcCch----hhCCHHHHHHHHHHHHHhc
Confidence 9999985 3443 4888887522222234556666666655211 122333 4799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEE-EecChHHHhh
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIV-EEGTHDSLLA 1280 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Iv-e~Gt~~eLl~ 1280 (1303)
+|+||||||||++||+.+...+.+.|++. + .|||+|||++..+. .||+|++|++|+++ ..|++++..+
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999886 3 59999999999886 49999999999997 6899998754
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-61 Score=605.97 Aligned_cols=201 Identities=23% Similarity=0.401 Sum_probs=165.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|+++ ++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECCe---EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 48999999999643 4999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEccCC-ccCc-ccHHHHHHcCCCCC--C--HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1133 GLVQQEP-IIFS-TTIRENIIYARHNA--S--EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1133 ~~VpQdp-~LF~-gTIreNl~~g~~~~--~--~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
+|++|++ .+++ .|+.||+.++.+.. + +.++.+.++..++.+ +..+.++ ..||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHHH
Confidence 9999986 4665 49999998754321 1 233444444444311 1123334 3799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEe-CCEEEE-ecChHHHhh
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLN-GGRIVE-EGTHDSLLA 1280 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~-~G~Ive-~Gt~~eLl~ 1280 (1303)
++.+|++|||||||++||..+...+.+.+++. +.|+|+|||+.+.+. .||+|++|+ +|+|++ .|+|++.++
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999875 369999999999875 599999998 899987 588888754
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=600.64 Aligned_cols=460 Identities=14% Similarity=0.079 Sum_probs=392.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 41 GGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFF 120 (1303)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~ 120 (1303)
+...+..++..++......++..++|.+++++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii 227 (659)
T TIGR00954 150 FINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVI 227 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666778888888888998888888889985 57999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHH
Q 000751 121 SGLAIAFV-NCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATS 199 (1303)
Q Consensus 121 ~~~~~~~~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 199 (1303)
+.+++++. ++|.+++++++..|+.+++..++.+++.+...+.++..++..+...|.++|+++||+|+.|+.+.++|++.
T Consensus 228 ~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~ 307 (659)
T TIGR00954 228 LYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSS 307 (659)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHH
Confidence 88888886 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----CCccHHHHHH-HHHH---HHHHHHHHHHHH
Q 000751 200 LQATLRYGILISLVQGLGLGFTYGLAIC--SCALQLWVGRFLVT-H----NKAHGGEIVT-ALFA---VILSGLGLNQAA 268 (1303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----g~~~~g~l~~-~~~~---~~~~~~~l~~~~ 268 (1303)
.++..+...+.....+...++..++... ..++.++.|...+. + |.+|.|.+++ ++.+ +..+..|+..+.
T Consensus 308 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~ 387 (659)
T TIGR00954 308 FYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLM 387 (659)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888888777777766542 23333344443332 2 7899888776 4443 445578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCC--------CCC--C--------------CCCCCCCccEEEEEEEEEcCCCCCC
Q 000751 269 TNFYSFDQGRIAAYRLYEMISRSSSTT--------NYD--G--------------NTLPSVHGNIEFRNVYFSYLSRPEI 324 (1303)
Q Consensus 269 ~~~~~~~~~~~a~~ri~~~l~~~~~~~--------~~~--~--------------~~~~~~~~~i~~~~v~f~y~~~~~~ 324 (1303)
..+..++++.++.+|+.++++.+++.. ... + .......+.|+++||+|+|++ ++
T Consensus 388 ~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~ 465 (659)
T TIGR00954 388 LAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GD 465 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CC
Confidence 999999999999999999997532210 000 0 001112346999999999963 34
Q ss_pred CcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHH
Q 000751 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (1303)
Q Consensus 325 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 404 (1303)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++|+||+|+|++|++|++||
T Consensus 466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~en 534 (659)
T TIGR00954 466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQ 534 (659)
T ss_pred eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHH
Confidence 799999999999999999999999999999999999999999999874 568999999999999999999
Q ss_pred HhcCC--------CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCC
Q 000751 405 IAYGR--------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476 (1303)
Q Consensus 405 i~~~~--------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~ 476 (1303)
|.++. +.+++++.++++.+++++++.+ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+
T Consensus 535 i~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~ 612 (659)
T TIGR00954 535 IIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA 612 (659)
T ss_pred HhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 99873 3567889999999999999988 999999976 5679999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeC
Q 000751 477 LDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (1303)
Q Consensus 477 lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~ 519 (1303)
||+++++.+.+.+++. ++|+|+||||++.++.||+|++|++
T Consensus 613 LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 613 VSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999998774 8999999999999999999999974
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=605.31 Aligned_cols=200 Identities=24% Similarity=0.406 Sum_probs=165.0
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++.. ++|+|+||+|++|+++||+||||||||||+++|.|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~~--~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCCC--eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 599999999996432 499999999999999999999999999999999999999999999976 2479
Q ss_pred EEEccCCccCcccHHHHHHc----CCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHh
Q 000751 1133 GLVQQEPIIFSTTIRENIIY----ARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1133 ~~VpQdp~LF~gTIreNl~~----g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAll 1208 (1303)
+|+||++. ...++.+|..+ ..+..+++++.++++..++.+... + .....||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~------~----~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------L----QPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh------c----CCccccCHHHHHHHHHHHHHh
Confidence 99999973 23355555321 122345677888888877743211 1 223489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEE-EecChHHHh
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIV-EEGTHDSLL 1279 (1303)
Q Consensus 1209 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Iv-e~Gt~~eLl 1279 (1303)
++|++|||||||++||+.+...+.+.+.+. + .|+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999998764 3 599999999998864 9999999999998 578887653
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=591.13 Aligned_cols=529 Identities=15% Similarity=0.130 Sum_probs=422.3
Q ss_pred HHHHhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 716 FWRLAELSFAEWL-----YAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANF 790 (1303)
Q Consensus 716 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 790 (1303)
+++++++.++.|. .+++.+++.++...+....+++.+.+++.....+. .........|+++++++.++..+..+
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-RNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 45566666667777778888888888887654321 11111233455556666667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 791 LQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGM 870 (1303)
Q Consensus 791 ~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~i~~~~~~~ 870 (1303)
+..++...+..++..++|++.+++....++.|||. ++|++.+|+++|++.+.+.+...+..++..++.++++++.++
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~ 234 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL 234 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888999999999999888889999984 579999999999999999999999999999999998888777
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 000751 871 L-LEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTK 949 (1303)
Q Consensus 871 ~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~ 949 (1303)
. ++|.+++++++.+|+..+......+.+.+..++.++..++.+..+.|.++|+++|++|+.++...+++++..++..+.
T Consensus 235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~ 314 (659)
T TIGR00954 235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH 314 (659)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5 999999999999999888888777778888888889999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHhh-c----CccCHHHHHHHHHHHH----HHHHHHHHHHhhHHHHH
Q 000751 950 SFLHGMAIGFAFGFSQFLLFA--CNALLLWYTGKSVR-D----GYMDLPTALKEYMVFS----FATFALVEPFGLAPYIL 1018 (1303)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~-~----g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 1018 (1303)
..+.....+....+..++... .....++.|...+. . |.++++..+..+.... ....++.........+.
T Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~ 394 (659)
T TIGR00954 315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT 394 (659)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777766666666542 22222333332222 2 6788887666444432 23445555666677788
Q ss_pred HHHHHHHHHHHHHhcCCCCC------CC--C-CCC-------------CCCCCCcccEEEEeeEEECCCCCCcceeeeee
Q 000751 1019 KRRKSLISVFEIIDRVPKID------PD--D-SSA-------------VKPPNVYGSIELKNVDFCYPSRPEVLVLSNFS 1076 (1303)
Q Consensus 1019 ~~~~~~~~i~~~~~~~~~~~------~~--~-~~~-------------~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~is 1076 (1303)
+...+..|++++++..++.+ +. + ... .......+.|+++||+|+|+++ .++|+|+|
T Consensus 395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~is 472 (659)
T TIGR00954 395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecce
Confidence 88999999999887533211 00 0 000 0011134679999999999743 25999999
Q ss_pred EEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCC--
Q 000751 1077 LKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYAR-- 1154 (1303)
Q Consensus 1077 l~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~-- 1154 (1303)
|+|++||++||+||||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|++|||.++.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999874 67899999999999999999999874
Q ss_pred -----CCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 000751 1155 -----HNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229 (1303)
Q Consensus 1155 -----~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~ 1229 (1303)
++.++++++++++.+++++++.+ |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 34578899999999999999988 999999986 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeC
Q 000751 1230 VVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266 (1303)
Q Consensus 1230 ~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~ 1266 (1303)
.+.+.+++. ++|+|+||||+++++.||+|++|+.
T Consensus 620 ~l~~~l~~~---~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCREF---GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHc---CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999873 6999999999999999999999973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=593.72 Aligned_cols=194 Identities=21% Similarity=0.303 Sum_probs=163.6
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999953 25999999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCcc-CcccHHHHHHcCCCCCC-HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcC
Q 000751 1133 GLVQQEPII-FSTTIRENIIYARHNAS-EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1133 ~~VpQdp~L-F~gTIreNl~~g~~~~~-~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~ 1210 (1303)
+|+||++.+ ++.|++||+.++..... +....++++..++.+...+ . ...||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------~----~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDK-------N----VKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhC-------C----cccCCHHHHHHHHHHHHHhcC
Confidence 999999875 46799999987532222 3345667777777554332 2 237999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecCh
Q 000751 1211 APILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
|+||||||||++||+++...+.+.|+++..+ ++|+|+|||+++.+. .||+|++|++ ++...|+.
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 9999999999999999999999999987542 689999999999775 5999999964 88777663
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-60 Score=550.02 Aligned_cols=455 Identities=25% Similarity=0.405 Sum_probs=353.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH-HHHhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL-EWLRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 386 (1303)
-++++|++++|+ ..++|+||||++.+||++|++|.||||||||+|.|+|.|+|++|+|.+||+...-.++ +.....
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 488999999995 4689999999999999999999999999999999999999999999999999986655 556678
Q ss_pred eEEEecccccc-cHhHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 387 IGLVTQEPALL-SLSIRDNIAYGRDA-------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 387 i~~v~Q~~~l~-~~ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
|+.|+||..|+ +.||.|||.+|+.. +..++++.++.+ +..+ |.+........+||+||||-|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~-----l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL-----LARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH-----HHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 99999999998 57999999999743 334444444332 2322 211113334457999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccCh-HHHhhcC
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTH-DELLATG 535 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~-~~l~~~~ 535 (1303)
||+..+++|+|||||||+|+....+.+.+.+++++ +|.++|+||||++.+. -||||.||.||+.+..++. .++-
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~--- 234 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETS--- 234 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCC---
Confidence 99999999999999999999988888888888876 7999999999999886 4999999999998854320 0000
Q ss_pred hhHHHHHHHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCCCCCCCCCCCCCCC
Q 000751 536 DLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVLSP 615 (1303)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (1303)
T Consensus 235 -------------------------------------------------------------------------------- 234 (500)
T COG1129 235 -------------------------------------------------------------------------------- 234 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhcCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCcccccccccccCCCCC
Q 000751 616 PSEKMLENGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPHSH 695 (1303)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1303)
T Consensus 235 -------------------------------------------------------------------------------- 234 (500)
T COG1129 235 -------------------------------------------------------------------------------- 234 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Q 000751 696 SDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWC 775 (1303)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1303)
.+ .+ +..+
T Consensus 235 -------~~-------------~l-----------------------------------v~~M----------------- 242 (500)
T COG1129 235 -------ED-------------EL-----------------------------------VRLM----------------- 242 (500)
T ss_pred -------HH-------------HH-----------------------------------HHHh-----------------
Confidence 00 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHH
Q 000751 776 LIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIF 855 (1303)
Q Consensus 776 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~ 855 (1303)
.|+
T Consensus 243 ------------------------------------------------------vGr----------------------- 245 (500)
T COG1129 243 ------------------------------------------------------VGR----------------------- 245 (500)
T ss_pred ------------------------------------------------------hCc-----------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHH
Q 000751 856 IQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKV 935 (1303)
Q Consensus 856 i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~ 935 (1303)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000751 936 MELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAP 1015 (1303)
Q Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1015 (1303)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCCh
Q 000751 1016 YILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGK 1095 (1303)
Q Consensus 1016 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGK 1095 (1303)
++.+..+. .... . ...-.++++|++..- .++|+||++++||.+||.|--|||+
T Consensus 246 -------------~~~~~~~~-~~~~--~----~~~~~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGR 298 (500)
T COG1129 246 -------------ELEDLFPE-PPEE--G----IGEPVLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGR 298 (500)
T ss_pred -------------chhhhccc-cccc--C----CCCcEEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCH
Confidence 00000010 0000 0 001136677776421 5889999999999999999999999
Q ss_pred HHHHHHHhccccCCccEEEECCeeCCCCCH-HHhhcceEEEccCC----ccCcccHHHHHHcCCC-CCCHH-HHHHHHHH
Q 000751 1096 STIISLIERFYDPVAGQVLLDGRDLKLYNL-RWLRNHLGLVQQEP----IIFSTTIRENIIYARH-NASEA-EVKEAARI 1168 (1303)
Q Consensus 1096 STL~~lL~rl~~~~~G~I~idG~di~~~~~-~~lR~~i~~VpQdp----~LF~gTIreNl~~g~~-~~~~~-ei~~al~~ 1168 (1303)
|-++++|+|..++.+|+|.+||.++.--++ +..+.-|+|||-|- .+...+|++|+.+..- ..+.. -+...-+.
T Consensus 299 TEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~ 378 (500)
T COG1129 299 TELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKER 378 (500)
T ss_pred HHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHH
Confidence 999999999999999999999998887765 58888999999875 3556799999987621 11101 24445555
Q ss_pred hchHHHHHhC---CCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEE
Q 000751 1169 ANAHHFISSL---PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTT 1245 (1303)
Q Consensus 1169 a~l~~~I~~l---p~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~Tv 1245 (1303)
....+++..| ..+.+.+++ +||||.+|+++|||+|..+|+||||||||.++|..+.+.|.+.|+++..+|++|
T Consensus 379 ~~~~~~~~~l~Ik~~s~~~~v~----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ai 454 (500)
T COG1129 379 ALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454 (500)
T ss_pred HHHHHHHHhcCcccCCccchhh----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEE
Confidence 5666777776 234455555 899999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCchhH-hhcCEEEEEeCCEEEEecCh
Q 000751 1246 ILIAHRAAMM-RHVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1246 I~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
|+||-.+..+ ..||||+||.+|+|+..=+.
T Consensus 455 l~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 455 LMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred EEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 9999999765 58999999999999874333
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=553.00 Aligned_cols=204 Identities=25% Similarity=0.414 Sum_probs=175.8
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcc
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
-.++++|++++|++. .++++++||.|++|++||||||||+|||||+++|.|...|.+|+|.+.-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 358999999999754 36999999999999999999999999999999999999999999998742 26
Q ss_pred eEEEccCC-ccC-cccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1132 LGLVQQEP-IIF-STTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1132 i~~VpQdp-~LF-~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
+||.+|+- .++ +.|+-|++.-..|+..+.++...|...++... ...++|+ .||||||-|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~------~~~~~v~----~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE------DQEKPVG----VLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH------HHhCchh----hcCHhHHHHHHHHHHhcc
Confidence 99999998 444 34999999877665557888888888776432 2344554 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEe-cChHHHhhcC
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEE-GTHDSLLAKN 1282 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~-Gt~~eLl~~~ 1282 (1303)
+|.+|||||||.+||.+|-..+.++|.+. ..|||+|||+...+.. |++|+++++ ++.++ |+|++..+..
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 99999999999999999999999999985 3699999999999875 899999999 88777 8998887654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=514.05 Aligned_cols=462 Identities=23% Similarity=0.385 Sum_probs=357.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCC-CCHHHHhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN-LKLEWLRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~ 386 (1303)
.++++++++.|| ...+++||||++++||+.||.|+||+|||||+++|.|+|+|++|+|.+||+.++- -+.+..|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999996 4679999999999999999999999999999999999999999999999999984 456778999
Q ss_pred eEEEeccccccc-HhHHHHHhcCCCCCHH-HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGRDATLD-QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~ 464 (1303)
||+|+|++.|+. -||.|||.+|.+...- .+........+.+..+++ |++-...+....||-|||||+.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 999999999995 7999999999743210 111111111122222222 445555566678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhhcChhHHHHH
Q 000751 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542 (1303)
Q Consensus 465 ~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 542 (1303)
|++||||||||-|-|.-...+.+.++.+. .|+|+|+|||++..+.. ||++-||.+|+++..-. ..
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~----------- 225 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PV----------- 225 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CC-----------
Confidence 99999999999999988888888888875 69999999999999875 99999999999864210 00
Q ss_pred HHHHhccCCCCCCccCcccccccccccCccCCCCCCCCCCcccCCCCccccccccCCCCCCCCCCCCCCCCCCchhhhhh
Q 000751 543 KCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLE 622 (1303)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1303)
. .
T Consensus 226 ------------------------------------------------------------------~-----~------- 227 (501)
T COG3845 226 ------------------------------------------------------------------A-----E------- 227 (501)
T ss_pred ------------------------------------------------------------------C-----C-------
Confidence 0 0
Q ss_pred cCCCCCccCCCccccccccccccCCCCCccccccccccCCCCCCCCCCCCCCCCCCCcccccccccccCCCCCCCCCCcc
Q 000751 623 NGMPMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTFSRPHSHSDDFPTK 702 (1303)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (1303)
T Consensus 228 -------------------------------------------------------------------------------- 227 (501)
T COG3845 228 -------------------------------------------------------------------------------- 227 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhccCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHH
Q 000751 703 VREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMG 782 (1303)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 782 (1303)
T Consensus 228 -------------------------------------------------------------------------------- 227 (501)
T COG3845 228 -------------------------------------------------------------------------------- 227 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000751 783 VVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAV 862 (1303)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~i~~~~~~ 862 (1303)
.+..++. +
T Consensus 228 ---------------------------------------------~t~~ela-~-------------------------- 235 (501)
T COG3845 228 ---------------------------------------------TTEEELA-E-------------------------- 235 (501)
T ss_pred ---------------------------------------------CCHHHHH-H--------------------------
Confidence 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Q 000751 863 IVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQ 942 (1303)
Q Consensus 863 i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~~~~~~~~~~ 942 (1303)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000751 943 LKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRK 1022 (1303)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1303)
+.....+.
T Consensus 236 ---------------------------------------lMvG~~v~--------------------------------- 243 (501)
T COG3845 236 ---------------------------------------LMVGREVV--------------------------------- 243 (501)
T ss_pred ---------------------------------------HhcCCccc---------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHH
Q 000751 1023 SLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLI 1102 (1303)
Q Consensus 1023 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL 1102 (1303)
...+. .+. .+ ..-.++++|++..-+. ..+.+++|||++++||.+||.|-.|-|-+-|+.+|
T Consensus 244 ---------~~~~~-~~~-----~p--g~~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eai 304 (501)
T COG3845 244 ---------LRVVK-PPS-----TP--GEVVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304 (501)
T ss_pred ---------ccccc-CCC-----CC--CCeEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHH
Confidence 00000 000 00 1125789999986532 23589999999999999999999999999999999
Q ss_pred hccccCCccEEEECCeeC-CCCCHHHhhc-ceEEEccCCc----cCcccHHHHHHcCCCC---------CCHHHHHHHHH
Q 000751 1103 ERFYDPVAGQVLLDGRDL-KLYNLRWLRN-HLGLVQQEPI----IFSTTIRENIIYARHN---------ASEAEVKEAAR 1167 (1303)
Q Consensus 1103 ~rl~~~~~G~I~idG~di-~~~~~~~lR~-~i~~VpQdp~----LF~gTIreNl~~g~~~---------~~~~ei~~al~ 1167 (1303)
.|+.+|.+|+|+++|.|+ ...+...+|+ .++|||.|.+ ..+-|+.||+.++..+ .+..++.+.++
T Consensus 305 sGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~ 384 (501)
T COG3845 305 SGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384 (501)
T ss_pred hCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH
Confidence 999999999999999997 6778777665 5999999984 6678999999876432 12234433332
Q ss_pred HhchHHHHHhC---CCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcE
Q 000751 1168 IANAHHFISSL---PHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKT 1244 (1303)
Q Consensus 1168 ~a~l~~~I~~l---p~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~T 1244 (1303)
+.++.+ +.+.++++. +||||+.||+-+||-|.++|++||..+||.+||..+.+.|++.|.+....|+.
T Consensus 385 -----~li~~fdVr~~~~~~~a~----~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~A 455 (501)
T COG3845 385 -----ELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKA 455 (501)
T ss_pred -----HHHHHcCccCCCCCcchh----hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCE
Confidence 333332 445566554 89999999999999999999999999999999999999999999998888899
Q ss_pred EEEEecCchhH-hhcCEEEEEeCCEEEEecChHH
Q 000751 1245 TILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1245 vI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
|++|+-.|+.+ .-||||.||.+|+|+...++++
T Consensus 456 VLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 456 VLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred EEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 99999999865 5699999999999998877765
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=468.52 Aligned_cols=238 Identities=28% Similarity=0.428 Sum_probs=223.3
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcc
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
|.|+|+||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~~-~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEGG-NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCCC-CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 5799999999997432 359999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 000751 1132 LGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA 1211 (1303)
Q Consensus 1132 i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p 1211 (1303)
|+||||+|.+|++|+++|+++..+ .++++++++++.+++.+++.++|+|++|.++++|.+||||||||+|||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999985443 5788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHhh
Q 000751 1212 PILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQP 1291 (1303)
Q Consensus 1212 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~~ 1291 (1303)
+||||||||++||+.+++.+++.|++.+. ++|+|+||||++++..||||+||++|+|++.|+|++|++.++.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFA-DCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 99999999999999999999999998754 69999999999999999999999999999999999999988888888865
Q ss_pred hh
Q 000751 1292 HY 1293 (1303)
Q Consensus 1292 ~~ 1293 (1303)
..
T Consensus 237 ~~ 238 (275)
T cd03289 237 SD 238 (275)
T ss_pred cc
Confidence 54
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=407.97 Aligned_cols=216 Identities=29% Similarity=0.497 Sum_probs=193.6
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCC-CCCHHHhhcc
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLK-LYNLRWLRNH 1131 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~-~~~~~~lR~~ 1131 (1303)
-|+++||+.+|.+. .||+|||++|++||.++|+||||||||||+++|.++-+|++|+|.|||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~~---~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGDK---EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCCe---EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 48999999999643 4999999999999999999999999999999999999999999999998774 3388999999
Q ss_pred eEEEccCCccCc-ccHHHHHHcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1132 LGLVQQEPIIFS-TTIRENIIYARH---NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1132 i~~VpQdp~LF~-gTIreNl~~g~~---~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
+|+|+|+..||+ -|+.||+.++.- ..+. +.-.+.|+++|+.|-....|. +|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHH
Confidence 999999999997 599999987631 1222 233556788888888777774 899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
||||..+|+|+|+|||||||||+.-..|.+.++++..+|.|.|+|||.+...++ ||||+.||+|+|+|+|+|+++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999998888999999999998876 8999999999999999999999763
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=405.82 Aligned_cols=214 Identities=27% Similarity=0.454 Sum_probs=189.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecC-CCCHHHHhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK-NLKLEWLRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~~~~ 386 (1303)
-|+++|++++|. +..||+|||++|++||.++|+||||||||||+++|+|+-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999994 567999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred eEEEecccccc-cHhHHHHHhcCC----CCCHHH----HHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 387 IGLVTQEPALL-SLSIRDNIAYGR----DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 387 i~~v~Q~~~l~-~~ti~~ni~~~~----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
+|+|+|+..|| +.|+.||+.++. ..+.++ -.+.+++.++.+-....| .+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 99999999999 589999999884 333333 233445666666665555 4799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhhcC
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
||||.-+|+++++|||||||||+....+.+.++++. .|.|.|+|||.+.+.+. ||||+.||+|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999998875 68999999999999986 9999999999999999999998764
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-49 Score=441.77 Aligned_cols=237 Identities=21% Similarity=0.341 Sum_probs=222.5
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcc
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 386 (1303)
+.|+|+|++|+|+. ++.++|+|+||+|++||+++|+|+||||||||+++|.|+++ ++|+|.+||.++..++...+|+.
T Consensus 1 g~i~~~nls~~~~~-~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTE-GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 36899999999963 24579999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCC
Q 000751 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (1303)
Q Consensus 387 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ 466 (1303)
|+||||+|.+|++|+++|+.+....++++++++++.+++.+++..+|+|++|.++++|.+||||||||++||||++++|+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997544567889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcChhHHHHHHHH
Q 000751 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (1303)
Q Consensus 467 ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 545 (1303)
||||||||++||+++.+.+++.|++..+++|+|+||||++.+..||+|++|++|++++.|+++++++..+.|++++...
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 9999999999999999999999998878999999999999998999999999999999999999999888888877643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=414.22 Aligned_cols=226 Identities=33% Similarity=0.541 Sum_probs=194.2
Q ss_pred EEEEeeEEECCCC--CCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH---HHh
Q 000751 1054 IELKNVDFCYPSR--PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL---RWL 1128 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~l 1128 (1303)
|+|+||++.|+.. +...+|+||||+|++||+.||+|+||+|||||++++.++-.|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999862 23469999999999999999999999999999999999999999999999998887765 566
Q ss_pred hcceEEEccCCccCc-ccHHHHHHcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1129 RNHLGLVQQEPIIFS-TTIRENIIYARH--NASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1129 R~~i~~VpQdp~LF~-gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
|++|++|+|++.|++ .|+.+|+.|+.. ..+.+ .+.+.|+.+|+.|.-.+-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 889999999999998 799999998743 22333 4556777777776655554 48999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
+|||||..+|+|||.|||||||||+|-+.|.+.|++.-++ |-|+++|||.++.+++ ||||.||++|+|+|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999999875332 6899999999999976 9999999999999999999998
Q ss_pred hcC--chhHHHHh
Q 000751 1280 AKN--GLYVRLMQ 1290 (1303)
Q Consensus 1280 ~~~--g~y~~l~~ 1290 (1303)
.+. ..-.++..
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 763 33444443
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=441.15 Aligned_cols=224 Identities=25% Similarity=0.428 Sum_probs=198.2
Q ss_pred CcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCC--C
Q 000751 1050 VYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLK--L 1122 (1303)
Q Consensus 1050 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~--~ 1122 (1303)
..+.|+|+||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++ |.+|+|.|||+|+. .
T Consensus 77 ~~~~i~~~nls~~y~~~~-~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRT-KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 347899999999997432 369999999999999999999999999999999999997 57999999999997 4
Q ss_pred CCHHHhhcceEEEccCCccCcccHHHHHHcCCC--CCCHHH-----HHHHHHHhchHHHHHhCCCCcccccCCCCCCCCh
Q 000751 1123 YNLRWLRNHLGLVQQEPIIFSTTIRENIIYARH--NASEAE-----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1123 ~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~~~~e-----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
++...+|++++||||+|++|++||+|||.++.. ..++++ +.++++.+++ ++++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCH
Confidence 566789999999999999999999999997632 234444 3455666665 34567889999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecC
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt 1274 (1303)
|||||+|||||++++|+|||||||||+||+++.+.+++.|++..+ ++|+|+|||+++++.. ||||+||++|+|+|.|+
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999998866 5999999999999987 99999999999999999
Q ss_pred hHHHhhcC
Q 000751 1275 HDSLLAKN 1282 (1303)
Q Consensus 1275 ~~eLl~~~ 1282 (1303)
++++....
T Consensus 308 ~~~l~~~~ 315 (329)
T PRK14257 308 TKTIFIHP 315 (329)
T ss_pred HHHHhcCC
Confidence 99998753
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=392.06 Aligned_cols=218 Identities=32% Similarity=0.509 Sum_probs=198.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-----cEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL-----GEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-----G~i~~~g~~~~~--~~~ 380 (1303)
.++++|+++.|. ++.+|+|||+.|++++++|++||||||||||++++.|+.+... |+|.++|+|+.+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999994 5679999999999999999999999999999999999998875 999999999975 689
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---C----CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---D----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
..+|++||+|+|.|--|..||+||++||. . .-++.++++++.|+|++.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 99999999999999999999999999993 1 224568889999999987753 245678889999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHh
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
|+||||||.-+|+||+||||||||||.+..+|.+.|.+++++-|+|+|||.+....+ +|+..++-.|+++|.|+.+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999988755 9999999999999999999987
Q ss_pred hcC
Q 000751 533 ATG 535 (1303)
Q Consensus 533 ~~~ 535 (1303)
.+.
T Consensus 237 ~~P 239 (253)
T COG1117 237 TNP 239 (253)
T ss_pred cCc
Confidence 653
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=400.17 Aligned_cols=213 Identities=32% Similarity=0.513 Sum_probs=192.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+|+|||++|. +..+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||.++++++...+|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999994 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccc-cHhHHHHHhcCC---CCCHH----HHHHHHHHhcch--HHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 389 LVTQEPALL-SLSIRDNIAYGR---DATLD----QIEEAAKIAHAH--TFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 389 ~v~Q~~~l~-~~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~--~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
||-|..-|| +.||.|||++-. ..+++ ++.+.++..+++ +|..+.| ..|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 999999999 589999999753 34444 455666677775 3555555 47999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcc-ccccCEEEEEeCceEeeccChHHHhhcC
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSL-IRNADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
|||..+|+|++||||++||||.++..+++-+.++.+ ++|+|+|||+++. ++.+|||.+|++|+|+..+++++++++.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999877653 8999999999987 4679999999999999999999999875
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=384.10 Aligned_cols=219 Identities=26% Similarity=0.461 Sum_probs=196.5
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCc-----cEEEECCeeCCC--CC
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA-----GQVLLDGRDLKL--YN 1124 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~-----G~I~idG~di~~--~~ 1124 (1303)
..++++|+++.|.+. .+|+|||++|++++.+|++|||||||||+++.|.|+.+... |+|.+||.||-+ ++
T Consensus 6 ~~~~~~~l~~yYg~~---~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECch---hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 358999999999743 49999999999999999999999999999999999999876 999999999976 57
Q ss_pred HHHhhcceEEEccCCccCcccHHHHHHcCCCC------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARHN------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
.-.||+++|+|+|.|.-|+.||+||+.||..- .-|+-++++|+.|.|||.+.. . +.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---r----L~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---R----LHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---H----hhCCccCCChhHH
Confidence 89999999999999999999999999998421 124557889999999998853 2 3445678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCch-hHhhcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAA-MMRHVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~-ti~~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
|||||||||.-+|+|||||||||||||-+-..|.+.|.++.+ +.|+|+|||.+. ..+-+|+...|..|+++|+|+-++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999999999999864 699999999997 566799999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+..+
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 8865
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=406.99 Aligned_cols=216 Identities=31% Similarity=0.493 Sum_probs=188.6
Q ss_pred EEEEEEEEEcCCC--CCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH---H
Q 000751 309 IEFRNVYFSYLSR--PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L 383 (1303)
Q Consensus 309 i~~~~v~f~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 383 (1303)
|++++||+.|+.. +...+|+||||+|++||+.+|+|+||+|||||++++.++-.|++|+|.+||+|+..++... +
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999742 1346999999999999999999999999999999999999999999999999998877554 5
Q ss_pred hcceEEEeccccccc-HhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 384 RSQIGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 384 ~~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
|++||+++|++.|++ .||.+|++|.. ..+.+ ++.+.++..++.|... ....+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-----------~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-----------RYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------cCchhcCcchhhHH
Confidence 679999999999997 89999999974 33333 3445555555555544 44568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
+|||||..+|+||+.|||||||||+|.+.|.+.|++.. -|-|+++|||.++.++. |||+.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998764 48999999999999987 9999999999999999999998
Q ss_pred hcC
Q 000751 533 ATG 535 (1303)
Q Consensus 533 ~~~ 535 (1303)
.++
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=388.77 Aligned_cols=220 Identities=30% Similarity=0.533 Sum_probs=194.0
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+|+|||++|.+. .+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~~~---~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCCc---eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 7999999999743 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCccCc-ccHHHHHHcCC--CCCC----HHHHHHHHHHhchH--HHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1134 LVQQEPIIFS-TTIRENIIYAR--HNAS----EAEVKEAARIANAH--HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~--~~~~----~~ei~~al~~a~l~--~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
||-|.--||+ .||.|||.+-. ..-+ ++++.+.++.++|. +|..+.|. .|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHHHH
Confidence 9999999997 59999997531 1123 34566777778875 46666664 7999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCch-hHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAA-MMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~-ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
|||..+|+|||+|||.+|||+-+...+|+-+.+..++ ++|+|+|||+++ .++-+|||+||++|+|+.+|+|++++++.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999998865433 699999999997 57889999999999999999999999873
Q ss_pred -chhHH
Q 000751 1283 -GLYVR 1287 (1303)
Q Consensus 1283 -g~y~~ 1287 (1303)
..|-+
T Consensus 228 an~FV~ 233 (309)
T COG1125 228 ANDFVE 233 (309)
T ss_pred cHHHHH
Confidence 34433
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=411.00 Aligned_cols=235 Identities=47% Similarity=0.794 Sum_probs=218.3
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDG-PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCC-ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 57999999996432 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000751 1134 LVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213 (1303)
Q Consensus 1134 ~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~I 1213 (1303)
|+||++.+|+.|++|||.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986554556678888888999999999999999998888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHh
Q 000751 1214 LLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290 (1303)
Q Consensus 1214 LlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~ 1290 (1303)
|||||||++||+.+...+.+.|++... ++|+|++||+++.+..||+|++|++|++++.|++++++++.+.|+.++.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 999999999999999999999998754 6999999999999988999999999999999999999998899988775
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=414.18 Aligned_cols=199 Identities=23% Similarity=0.392 Sum_probs=166.5
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|.++||+|.|++.+ ..++++||-|.++++||+|||+|+|||||++++.+...|..|.|.-.-.. ++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 589999999998665 68999999999999999999999999999999999999999998765432 34
Q ss_pred EEEcc---CCccCcccHHHHHHcCCCC-CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHh
Q 000751 1133 GLVQQ---EPIIFSTTIRENIIYARHN-ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1133 ~~VpQ---dp~LF~gTIreNl~~g~~~-~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAll 1208 (1303)
++-.| +-.-++.|.-|++..-.++ -+.+++...+..+|+..... +.+++ +||+|||.|++.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q------~~p~~----~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQ------VVPMS----QLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccc------ccchh----hcccccchhHHHHHHHh
Confidence 44444 3345677888998765553 56788899999999864433 33343 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEE-ecChHH
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVE-EGTHDS 1277 (1303)
Q Consensus 1209 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive-~Gt~~e 1277 (1303)
++|.||||||||++||.++-..+.++|.+. ..+||+|+|+...|.+ +++|.+.++|.+.. .|++..
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence 999999999999999999999999999885 4699999999998865 89999999998865 455543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=427.40 Aligned_cols=223 Identities=29% Similarity=0.439 Sum_probs=197.5
Q ss_pred CCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecC--C
Q 000751 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIK--N 377 (1303)
Q Consensus 305 ~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~--~ 377 (1303)
..+.|+|+|++|+|++ +..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++. .
T Consensus 77 ~~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3457999999999963 23579999999999999999999999999999999999997 57999999999997 3
Q ss_pred CCHHHHhcceEEEecccccccHhHHHHHhcCC---CCCHHH-----HHHHHHHhcchHHHHhcccccCccccCCCCCCCh
Q 000751 378 LKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLDQ-----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (1303)
Q Consensus 378 ~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~~~~~-----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSg 449 (1303)
.+...+|+.++||||+|++|++|++|||.|+. ..++++ +.++++.|+++ +++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-------DEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccCCH
Confidence 45677899999999999999999999999874 233332 45566666654 3456788999999999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccCh
Q 000751 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTH 528 (1303)
Q Consensus 450 GqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~ 528 (1303)
|||||++||||++++|+|||||||||+||+++...+.+.|+++.+++|+|+|||+++++.. ||+|++|++|+|++.|++
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998889999999999999887 999999999999999999
Q ss_pred HHHhhcC
Q 000751 529 DELLATG 535 (1303)
Q Consensus 529 ~~l~~~~ 535 (1303)
+++....
T Consensus 309 ~~l~~~~ 315 (329)
T PRK14257 309 KTIFIHP 315 (329)
T ss_pred HHHhcCC
Confidence 9997643
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=408.58 Aligned_cols=240 Identities=31% Similarity=0.515 Sum_probs=221.1
Q ss_pred CcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhh
Q 000751 1050 VYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1050 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 1129 (1303)
..|.|+++|++++|++. ..++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45789999999999753 23599999999999999999999999999999999999999999999999999999988999
Q ss_pred cceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1130 NHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
++++||+|+|.+|++|++||+.+... ..+++++++++.+++.+++..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999986532 34667888999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhc-CchhHHH
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRL 1288 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~-~g~y~~l 1288 (1303)
+|++|||||||++||+++...+.+.+++... ++|+|++||+++.+..||+|++|++|++++.|+++++++. ++.|+++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFA-DRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-CCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 9999999999999999999999999998644 6999999999999999999999999999999999999976 5678888
Q ss_pred Hhhh
Q 000751 1289 MQPH 1292 (1303)
Q Consensus 1289 ~~~~ 1292 (1303)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 7643
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=377.68 Aligned_cols=464 Identities=19% Similarity=0.201 Sum_probs=350.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 43 VFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSG 122 (1303)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~~~~ 122 (1303)
.++.+.+........++.+..++|+++.++++..|+..+++. .++.++.++++|+..|. +-...++.+..+....+++
T Consensus 61 f~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s 138 (546)
T COG4615 61 FMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGS 138 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHHHHHHHHHHH
Confidence 334445555556678999999999999999999999999996 78999999999999998 4455678899999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchhHHH--HHHHHHHH
Q 000751 123 LAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLA--KYSYATSL 200 (1303)
Q Consensus 123 ~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~--~~~~~~~~ 200 (1303)
++.+.|+|+++.+++.+.+.+.++...+...+..+.....++..+++....+..++|-+.++....-.+. .+.|....
T Consensus 139 ~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a 218 (546)
T COG4615 139 AAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDA 218 (546)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcch
Confidence 9999999999988887777777777777777777888888899999999999999999999987643221 12222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 201 QATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIA 280 (1303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 280 (1303)
+...+..............+.+.+.+....+++|+.... +.-+.....++.+..+.+..|+.++...+..+.++.+|
T Consensus 219 ~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA 295 (546)
T COG4615 219 QEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVA 295 (546)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Confidence 222221111111111112233333333334445543222 22222334445555566678999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhcc
Q 000751 281 AYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 281 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.++|.++-..|+...-......|. -..|+++||.|+|+. ...-+.-||++|++||++.|+|.|||||||++++|.|+
T Consensus 296 ~~kiakle~~~~~a~~~~~q~~p~-~~~lelrnvrfay~~--~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL 372 (546)
T COG4615 296 FNKIAKLELAPYKADFPRPQAFPD-WKTLELRNVRFAYQD--NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL 372 (546)
T ss_pred HHHHHHhhcCCccccCCCCCcCCc-ccceeeeeeeeccCc--ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc
Confidence 999998755433221111122232 236999999999963 33668899999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCcc
Q 000751 361 YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQ 439 (1303)
Q Consensus 361 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 439 (1303)
|.|++|+|++||.++..-++++.|+-++-|+-|-|||+.++ -++ .++++.+..-++.-.+....+ +.+|-=+
T Consensus 373 ~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs- 445 (546)
T COG4615 373 YQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS- 445 (546)
T ss_pred cCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-
Confidence 99999999999999999999999999999999999998764 122 367776666665554433222 2122111
Q ss_pred ccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEecCCccccccCEEEEE
Q 000751 440 VGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRNADYIAVM 517 (1303)
Q Consensus 440 vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~--~~~~t~i~ith~~~~~~~~d~i~~l 517 (1303)
...||-|||.|+|+--|++-+.||++|||=-+--||.=++.+.+.+.-. ..|||++.|||+-.+...|||++.+
T Consensus 446 ----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~ 521 (546)
T COG4615 446 ----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEM 521 (546)
T ss_pred ----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHH
Confidence 2469999999999999999999999999999999999999998776443 3599999999999999999999999
Q ss_pred eCceEeec
Q 000751 518 DEGRLFEM 525 (1303)
Q Consensus 518 ~~G~i~~~ 525 (1303)
++|+++|.
T Consensus 522 ~~G~~~e~ 529 (546)
T COG4615 522 RNGQLSEL 529 (546)
T ss_pred hcCceeec
Confidence 99999874
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=404.32 Aligned_cols=234 Identities=46% Similarity=0.747 Sum_probs=216.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|++ ...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 578999999963 2357999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCE
Q 000751 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (1303)
Q Consensus 389 ~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~i 467 (1303)
|++|++++|+.|++||+.++. ..+.+++.+.++..++.+++..+|.|+++.....+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999999875 4456677778888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcChhHHHHHH
Q 000751 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543 (1303)
Q Consensus 468 lilDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 543 (1303)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+++++..+.+.|+.++.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 9999999999999999999999988778999999999999988999999999999999999999988888877654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=400.73 Aligned_cols=235 Identities=49% Similarity=0.786 Sum_probs=218.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999642 24999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000751 1134 LVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213 (1303)
Q Consensus 1134 ~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~I 1213 (1303)
|++|+|.+|++|++||+.++....+++++.++++.+++.+.+..+|.|+++.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655667778888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHhh
Q 000751 1214 LLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQP 1291 (1303)
Q Consensus 1214 LlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~~ 1291 (1303)
|||||||++||+++...+.+.|.+..+ ++|+|++||+++.+..||++++|++|++++.|+++++.++.+.|..++.+
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHhc
Confidence 999999999999999999999998755 68999999999999899999999999999999999999887778777654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=399.06 Aligned_cols=236 Identities=57% Similarity=0.949 Sum_probs=216.3
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997533346999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000751 1134 LVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213 (1303)
Q Consensus 1134 ~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~I 1213 (1303)
|+||+|.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++.+.....+||||||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556777888888899999999999999999888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHHHh
Q 000751 1214 LLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290 (1303)
Q Consensus 1214 LlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~ 1290 (1303)
|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+.+++.+..+.++.++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 236 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVK 236 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHhh
Confidence 99999999999999999999999875 56999999999999889999999999999999999999887776666653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=389.77 Aligned_cols=215 Identities=31% Similarity=0.536 Sum_probs=193.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.++++|++|+|+++ ++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|.+||.|+.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~~---~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECCe---eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 37899999999743 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC-ccCcccHHHHHHcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1133 GLVQQEP-IIFSTTIRENIIYARHN----------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1133 ~~VpQdp-~LF~gTIreNl~~g~~~----------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
+||||++ .-|.-||+|=+.+|+.. .+.+.+.+|++.+++.++..+. + ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence 9999996 45667999999988532 1223578899999998886542 2 36999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCch-hHhhcCEEEEEeCCEEEEecChHHHh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI-MGNKTTILIAHRAA-MMRHVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~~TvI~IaHrl~-ti~~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
.|||||.++|+||+||||||+||...+-.|++.++++. .+++|+|+|.|+++ ..+.||++++|++|+|+.+|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999886 33799999999997 56789999999999999999999988
Q ss_pred hc
Q 000751 1280 AK 1281 (1303)
Q Consensus 1280 ~~ 1281 (1303)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=396.00 Aligned_cols=228 Identities=48% Similarity=0.816 Sum_probs=212.5
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcc
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
|.|+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 468999999999742 249999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 000751 1132 LGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA 1211 (1303)
Q Consensus 1132 i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p 1211 (1303)
++|+||+|.+|++|++||+.++.+....+++.++++.+++.++++.+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876555667888899999999999999999999999889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1212 PILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1212 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.++.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 99999999999999999999999998754 69999999999998899999999999999999999887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-44 Score=396.88 Aligned_cols=233 Identities=54% Similarity=0.884 Sum_probs=215.4
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++.. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDG-PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCC-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 57999999997542 25999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000751 1134 LVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213 (1303)
Q Consensus 1134 ~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~I 1213 (1303)
|+||+|.+|+.|++||+.++....+.+++.+.++.+++.+++..+|.|+++.++.....||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655566778888888999999999999999999988999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHH
Q 000751 1214 LLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288 (1303)
Q Consensus 1214 LlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l 1288 (1303)
|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++....+.|+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 999999999999999999999998754 69999999999999899999999999999999999998887777654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=400.53 Aligned_cols=238 Identities=32% Similarity=0.472 Sum_probs=218.7
Q ss_pred CCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHh
Q 000751 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384 (1303)
Q Consensus 305 ~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~ 384 (1303)
..+.|+++|++++|+. .+..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...++
T Consensus 16 ~~~~i~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYEN-NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCC-CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 4568999999999963 235699999999999999999999999999999999999999999999999999988888899
Q ss_pred cceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC
Q 000751 385 SQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~ 464 (1303)
+.|+||+|++++|++|++||+.+......+++.++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999976544456678888888899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhc-ChhHHHHHH
Q 000751 465 PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLK 543 (1303)
Q Consensus 465 ~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 543 (1303)
|++|||||||++||++++..+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.|++++.
T Consensus 175 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 254 (257)
T cd03288 175 SSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVR 254 (257)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHh
Confidence 9999999999999999999999999888779999999999999988999999999999999999999875 356776654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=411.99 Aligned_cols=226 Identities=30% Similarity=0.489 Sum_probs=193.2
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH---hh
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW---LR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 1129 (1303)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996421 236999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEccCCccCc-ccHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1130 NHLGLVQQEPIIFS-TTIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~-gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
++|+||||++.+|+ .|++||+.++.. ..+. +++.++++.+++.++....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999996 799999987532 1222 34567777777766554443 489999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhh
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
|||||+.+|+|||||||||+||+.+...+.+.|++..++ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 999999999999999999999999999999999987543 6899999999999854 99999999999999999999986
Q ss_pred cC--chhHHHHh
Q 000751 1281 KN--GLYVRLMQ 1290 (1303)
Q Consensus 1281 ~~--g~y~~l~~ 1290 (1303)
.. ...+.++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 52 33444444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=403.80 Aligned_cols=212 Identities=29% Similarity=0.462 Sum_probs=191.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.|||.++.+++++. +.|
T Consensus 3 ~i~l~~v~K~yg---~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcC---CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 589999999994 222999999999999999999999999999999999999999999999999999998875 789
Q ss_pred EEEeccccccc-HhHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGRD-------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
|+|+|+..||. .||+|||.|+.. ..++++.++++..++.+.+++.|. .||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHH
Confidence 99999999995 799999999952 235678888888888888877764 79999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhcC
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
||.++|++++||||+|+||++....+...|+++.+ +.|+|.|||+...+. .||||+||++|+|.+.|++.|+..+.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999999999888877653 789999999997765 69999999999999999999998764
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=390.96 Aligned_cols=221 Identities=35% Similarity=0.572 Sum_probs=206.5
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcc
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
|.|+++|++++|+... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPNL-PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCCC-cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 4689999999997432 359999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 000751 1132 LGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA 1211 (1303)
Q Consensus 1132 i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p 1211 (1303)
++|+||+|.+|++|++||+.+... .+.+++.++++..++.+++..+|.|+++.++..+.+||||||||++||||++++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987643 5677899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecCh
Q 000751 1212 PILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1212 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
+++||||||++||+.+.+.+.+.|++... ++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 99999999999999999999999998754 5899999999999999999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=434.62 Aligned_cols=199 Identities=26% Similarity=0.432 Sum_probs=168.3
Q ss_pred cceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC--CccEEEECCeeCCCCCHHHhhcceEEEccCCc-cCccc
Q 000751 1069 VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP--VAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPI-IFSTT 1145 (1303)
Q Consensus 1069 ~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~--~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~-LF~gT 1145 (1303)
...|+||+=-++||...|++|+||||||||++.|.+-..- .+|+|+|||.+..+ +..++.+|||.|++. +=.-|
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcccc
Confidence 3589999999999999999999999999999999987543 57999999998766 789999999999875 44569
Q ss_pred HHHHHHcCC----C-CCCHHH----HHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCC-CEEE
Q 000751 1146 IRENIIYAR----H-NASEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA-PILL 1215 (1303)
Q Consensus 1146 IreNl~~g~----~-~~~~~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p-~ILl 1215 (1303)
|||-|.|.. | +.+++| ++++.+..++.+. =|..||.-|..||..||.|+.||--|+.|| .||+
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 999997652 1 234333 4555555555443 356788888999999999999999999999 8999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCch--hHhhcCEEEEEe-CCEEEEecChHH
Q 000751 1216 LDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAA--MMRHVDNIVVLN-GGRIVEEGTHDS 1277 (1303)
Q Consensus 1216 LDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~--ti~~~D~Iivl~-~G~Ive~Gt~~e 1277 (1303)
||||||+||+++...|.+.++++...|+||++.=|.++ ..+..|+++.|+ +|+.|..|+..+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999888999999999987 467899999996 589999998644
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=354.06 Aligned_cols=209 Identities=28% Similarity=0.455 Sum_probs=186.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|.+++|.|+|...+ =..+++|++||++||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999995321 258899999999999999999999999999999999999999999999877665 46799
Q ss_pred EEeccccccc-HhHHHHHhcCC-------CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR-------DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~-------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
+++||.-||. -||++||.+|. ..+.+++..++...++..+.++||. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999995 79999999994 2345678999999999999999986 699999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhhcC
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
|+++-|||+||||+|+|||.-+..+...+.++. ++.|+++|||+++.+.. +|+++++++|||.+.|+.+++....
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999999888888877664 57899999999998764 9999999999999999999988754
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=394.78 Aligned_cols=233 Identities=51% Similarity=0.773 Sum_probs=215.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++++|++ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999952 346999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCE
Q 000751 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (1303)
Q Consensus 389 ~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~i 467 (1303)
|++|++.+|+.|++||+.++. ..+++++.++++.+++.+.+..+|.|+++.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 5566677888888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcChhHHHHHH
Q 000751 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543 (1303)
Q Consensus 468 lilDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 543 (1303)
|||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|+..+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHh
Confidence 9999999999999999999999888778999999999999988999999999999999999998877666665543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-44 Score=368.30 Aligned_cols=221 Identities=32% Similarity=0.513 Sum_probs=192.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHH---HHh
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~~ 384 (1303)
.|++++|+|+| +++.+|+||||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~f---G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSF---GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeec---CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 59999999999 356899999999999999999999999999999999999999999999999999998764 468
Q ss_pred cceEEEeccccccc-HhHHHHHhcCC----CCCHHHHHH----HHHHhcchHH-HHhcccccCccccCCCCCCChHHHHH
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEE----AAKIAHAHTF-ISSLEKGYETQVGRAGLALTEEQKIK 454 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~----~~~~~~~~~----~~~~~~~~~~-i~~l~~g~~t~vg~~g~~LSgGqkqr 454 (1303)
+++|+++|.-.||+ .||+||+.|.- ..+++.+++ .++.++|... .+.+| ..||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 99999999999995 69999999962 445555444 3456666655 44444 4799999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHH
Q 000751 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 455 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 531 (1303)
+|||||+..||+|+++|||||+|||.+...+.+.|+++.+ +.|+|+|||+++++.. ||+|+++.+|+|+..|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999888877753 8999999999998865 999999999999999999999
Q ss_pred hhcChhH-HHHH
Q 000751 532 LATGDLY-AELL 542 (1303)
Q Consensus 532 ~~~~~~~-~~~~ 542 (1303)
.+.+..| ++++
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 8875443 4433
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=391.93 Aligned_cols=225 Identities=48% Similarity=0.767 Sum_probs=209.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++|+|++ .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999952 34699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCC
Q 000751 388 GLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (1303)
Q Consensus 388 ~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ 466 (1303)
+|++|++.+|.+|++||+.++. ....+++.++++.+++.++++.+|.|+++.++.....||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876 455677888888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhc
Q 000751 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 467 ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
+|||||||++||+.+.+.+.+.+.++.+++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999988778999999999999888999999999999999998887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=385.44 Aligned_cols=217 Identities=34% Similarity=0.588 Sum_probs=197.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCC-CCCHHHhhcc
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLK-LYNLRWLRNH 1131 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~-~~~~~~lR~~ 1131 (1303)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|+|.+||.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999876 46999999999999999999999999999999999999999999999999999 4889999999
Q ss_pred eEEEccCC--ccCcccHHHHHHcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1132 LGLVQQEP--IIFSTTIRENIIYARHN--ASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1132 i~~VpQdp--~LF~gTIreNl~~g~~~--~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
++||.|+| .+|..||.|.+.||..+ .+. +.+.++++.+++.++.++.|. +||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~-----------~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF-----------NLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc-----------ccCCcceeeHHh
Confidence 99999999 89999999999998543 343 346778889998887655553 899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|.+|..+|+|||||||||+||+...+.+.+.++++..+ ++|+|+|||+++.+.. ||+++||++|+++.+|+|+++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999999998665 5799999999998877 999999999999999999999876
Q ss_pred C
Q 000751 1282 N 1282 (1303)
Q Consensus 1282 ~ 1282 (1303)
.
T Consensus 230 ~ 230 (235)
T COG1122 230 A 230 (235)
T ss_pred h
Confidence 4
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=378.02 Aligned_cols=197 Identities=30% Similarity=0.463 Sum_probs=174.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.+++++|+++|+ ...+|+||||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~---~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeC---ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 488999999995 36799999999999999999999999999999999999999999999999987443 3479
Q ss_pred EEEeccccccc-HhHHHHHhcCCCC-------CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGRDA-------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
+||+|++.||. -||+||+.+|.+. ..++..+.++.+++.+|-...|. .||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHH
Confidence 99999999997 7999999998532 23457778888888888777764 79999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccc-cccCEEEEEeC--ceEe
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDE--GRLF 523 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~-~~~d~i~~l~~--G~i~ 523 (1303)
||+.+|+||+||||++|||+.|...+++.+.++. .++|+++|||+.+.. ..+|||++|.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999887764 469999999999875 56999999998 4553
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=398.07 Aligned_cols=213 Identities=32% Similarity=0.534 Sum_probs=194.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+.+|.+.. +|+|+||+|+.||.++|+|||||||||++++|.||.+|++|+|.|||.|++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~~---~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCce---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 589999999996432 999999999999999999999999999999999999999999999999999999876 899
Q ss_pred EEEccCCccCcc-cHHHHHHcCCCCC------CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARHNA------SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~~~------~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
++|+|+..||+- ||+|||.|+.... -++++.++++..++.+.+++.|. +||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHH
Confidence 999999999975 9999999985421 25678899999999999988875 79999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCch-hHhhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAA-MMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~-ti~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
||+++|+++|||||.|+||++....+...|+++.++ +.|+|.|||+.. ...-+|||+||++|+|.+.|+|.|+.++
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999999999999998876432 579999999875 5567999999999999999999999976
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=403.22 Aligned_cols=222 Identities=24% Similarity=0.443 Sum_probs=187.6
Q ss_pred cEEEEeeEEECCCCC--CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC-------
Q 000751 1053 SIELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY------- 1123 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~------- 1123 (1303)
.|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997431 23599999999999999999999999999999999999999999999999998753
Q ss_pred ---------CHHHhhcceEEEccCC--ccCcccHHHHHHcCCC--CCCHHHHHHHHHHhchHHHHHhCCCCcc-cccCCC
Q 000751 1124 ---------NLRWLRNHLGLVQQEP--IIFSTTIRENIIYARH--NASEAEVKEAARIANAHHFISSLPHGYD-THVGMR 1189 (1303)
Q Consensus 1124 ---------~~~~lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~I~~lp~Gld-t~vge~ 1189 (1303)
+...+|++++||+|+| .+|+.|++|||.++.. ..+.++..+ . ..++++.+ |++ ......
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999987632 223333322 1 12334443 453 345667
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCE
Q 000751 1190 GVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGR 1268 (1303)
Q Consensus 1190 G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~ 1268 (1303)
+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|.+...+++|+|+|||+++.+ ..||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 789999999999999999999999999999999999999999999988755579999999999976 5799999999999
Q ss_pred EEEecChHHHhhc
Q 000751 1269 IVEEGTHDSLLAK 1281 (1303)
Q Consensus 1269 Ive~Gt~~eLl~~ 1281 (1303)
|++.|+|+++.+.
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999987543
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=388.58 Aligned_cols=219 Identities=33% Similarity=0.512 Sum_probs=206.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++|+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.|
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRP-NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCC-CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 5899999999963 235799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCE
Q 000751 388 GLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (1303)
Q Consensus 388 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~i 467 (1303)
+|++|++.+|++|++||+.+......+++.++++..++.+++..+|.|+++..++.+.+||||||||++|||||+++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987766677888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccC
Q 000751 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (1303)
Q Consensus 468 lilDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~ 527 (1303)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999998877899999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=392.59 Aligned_cols=233 Identities=60% Similarity=0.941 Sum_probs=211.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++++|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999996433357999999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCE
Q 000751 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (1303)
Q Consensus 389 ~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~i 467 (1303)
|++|++.+|+.|++||+.++. ....+++.+.++.+++.+++..+|.|+++.......+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 4455667777888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcChhHHHH
Q 000751 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541 (1303)
Q Consensus 468 lilDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 541 (1303)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+++......++.+
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 234 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHH
Confidence 99999999999999999999998877789999999999998899999999999999999998887765555444
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=385.97 Aligned_cols=213 Identities=31% Similarity=0.492 Sum_probs=192.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+..|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999994 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccc-ccccHhHHHHHhcCC-C----------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 388 GLVTQEP-ALLSLSIRDNIAYGR-D----------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 388 ~~v~Q~~-~l~~~ti~~ni~~~~-~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
|||||++ .-|.-||+|-+.+|+ + .+.+.+.++++.+++.++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999996 456789999999995 2 123357788898888777543 2347999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccc-cccCEEEEEeCceEeeccChHHHh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
.|||||.++|+||+||||||+||......+++.++++. +|+|+|+|.|+++.. +.||++++|++|+|+..|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999998876 479999999999875 579999999999999999999887
Q ss_pred hc
Q 000751 533 AT 534 (1303)
Q Consensus 533 ~~ 534 (1303)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=391.99 Aligned_cols=231 Identities=49% Similarity=0.812 Sum_probs=212.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|++. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 236999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCE
Q 000751 389 LVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSI 467 (1303)
Q Consensus 389 ~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~i 467 (1303)
|++|++.+|..|++||+.++. ....+++.+.++.+++.++++.+|.|+++..+.....||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 4566677888888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcChhHHH
Q 000751 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540 (1303)
Q Consensus 468 lilDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 540 (1303)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|+.
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAK 232 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhh
Confidence 9999999999999999999999988889999999999999988999999999999999999998777655543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=403.51 Aligned_cols=212 Identities=30% Similarity=0.522 Sum_probs=192.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.++++||+++|. +..+++|+||+|++||+++++|||||||||++++|+||..|++|+|.+||+|+.+++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999994 56899999999999999999999999999999999999999999999999999998887 6789
Q ss_pred EEEecccccc-cHhHHHHHhcCCC----CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 388 GLVTQEPALL-SLSIRDNIAYGRD----ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 388 ~~v~Q~~~l~-~~ti~~ni~~~~~----~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
|+|+|+..|| +.||+|||.||.. ..+ +++.++++..++.++-.+.|. .|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 9999999999 5899999999953 222 378888888888887766654 7999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcc-ccccCEEEEEeCceEeeccChHHHhhcC
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSL-IRNADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
|||..+|++|+||||.|+||.+-+..++..++++. .|.|.|+|||+.+. +..+|||+||++|+|...|+++|+..+.
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999988887764 48999999999976 5679999999999999999999998764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=348.78 Aligned_cols=212 Identities=32% Similarity=0.536 Sum_probs=189.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|.+++|.|+|...+ =.++++|++||+|||+||||||||||++++.||..|.+|+|+|||+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 57899999996543 278999999999999999999999999999999999999999999999887764 46799
Q ss_pred EEccCCccCc-ccHHHHHHcCCCC------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARHN------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~~------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
+++||..||. -||++|+.+|... ...+.+..++..+|+.+|.++||. .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999997 5999999998642 234678999999999999999996 799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhcCc
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAKNG 1283 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~~g 1283 (1303)
|+|+.+||+||||.||||+.-...+...+.+++.+ +.|+++|||.++-+ +.+|+++++++|||.++|+-+++++..+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999999999999998888776433 57999999999865 5699999999999999999999998754
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=355.32 Aligned_cols=206 Identities=27% Similarity=0.450 Sum_probs=185.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH---HHHhc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~~~ 385 (1303)
|+|+||+++|++ ..++|+||||+|++||++.|+||||||||||+|+|.+...|+.|+|.++|+|+..++. ..+|+
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 799999999974 3679999999999999999999999999999999999999999999999999987754 45899
Q ss_pred ceEEEecccccc-cHhHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 386 QIGLVTQEPALL-SLSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 386 ~i~~v~Q~~~l~-~~ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
+||+|+||..|. +-||.||++|.- ... .+++.++++.++|.+-...||. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 999999999877 579999999873 222 3567788899999988888885 699999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCCccccc-cCEEEEEeCceEeeccC
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~-~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~ 527 (1303)
|||+..+|++||-||||.+|||.+...|++.+.++ +.|.||++.||+.+.+.. --+++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999887 469999999999999875 67899999999987543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=367.53 Aligned_cols=227 Identities=30% Similarity=0.490 Sum_probs=188.8
Q ss_pred cEEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-HHHhhc
Q 000751 1053 SIELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN-LRWLRN 1130 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~lR~ 1130 (1303)
.++++|+++.|+... -.++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997542 125999999999999999999999999999999999999999999999998766543 347788
Q ss_pred ceEEEccCCcc-Cc--ccHHHHHH----cCCCCCCHHHHHHHHHHhchHH-HHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1131 HLGLVQQEPII-FS--TTIRENII----YARHNASEAEVKEAARIANAHH-FISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1131 ~i~~VpQdp~L-F~--gTIreNl~----~g~~~~~~~ei~~al~~a~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
.+.+|+|||.- +| -||++-|. ...-+-.+.+++++++.+|+.+ |..+.|. .||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~-----------eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch-----------hcChhHHHHHH
Confidence 99999999952 22 36666663 2111224566899999999865 4444553 79999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhh
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
|||||.-+|++||||||||+||+-.+++|++.+.+..++ +-|.|+|||+++.+.. ||||+||++|+++|.++-+++.+
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999887553 3499999999999875 99999999999999999999998
Q ss_pred c-CchhHHHHh
Q 000751 1281 K-NGLYVRLMQ 1290 (1303)
Q Consensus 1281 ~-~g~y~~l~~ 1290 (1303)
. ...|.+...
T Consensus 232 ~~~h~ytr~Ll 242 (252)
T COG1124 232 HPSHPYTRELL 242 (252)
T ss_pred CCccHHHHHHH
Confidence 7 445555443
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=390.80 Aligned_cols=219 Identities=32% Similarity=0.479 Sum_probs=186.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH---HHhhc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL---RWLRN 1130 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 1130 (1303)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 5789999999643 59999999999999999999999999999999999999999999999999988764 56789
Q ss_pred ceEEEccCCccCcc-cHHHHHHcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1131 HLGLVQQEPIIFST-TIRENIIYARH---NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~g-TIreNl~~g~~---~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
+++||||+|.+|+. |++||+.++.. ..+. +++.++++..++.++..+ ...+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-----------YPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 99999999999986 99999987521 1232 234555666655443322 23479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhh
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
|||||+++|+||||||||++||+.+.+.+.+.|++..+ .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998754 26899999999998764 99999999999999999999886
Q ss_pred cCchhH
Q 000751 1281 KNGLYV 1286 (1303)
Q Consensus 1281 ~~g~y~ 1286 (1303)
....|.
T Consensus 227 ~~~~~~ 232 (235)
T cd03261 227 SDDPLV 232 (235)
T ss_pred CCChhh
Confidence 654443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=370.56 Aligned_cols=207 Identities=33% Similarity=0.534 Sum_probs=176.7
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH---h-
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW---L- 1128 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---l- 1128 (1303)
++++||+..|.... ...+|+++||+|++||.|||+||||||||||+++|-++..|++|+|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 246999999999999999999999999999999999999999999999999999998543 3
Q ss_pred hcceEEEccCCccCcc-cHHHHHHcC----CCCC--CHHHHHHHHHHhchHHHHH-hCCCCcccccCCCCCCCChHHHHH
Q 000751 1129 RNHLGLVQQEPIIFST-TIRENIIYA----RHNA--SEAEVKEAARIANAHHFIS-SLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1129 R~~i~~VpQdp~LF~g-TIreNl~~g----~~~~--~~~ei~~al~~a~l~~~I~-~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
|++||||+|+..|++. |++||+.++ .... ..+...+.++..|+.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 5679999999999875 999999853 2111 1344566666667765544 333 4899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhhcCEEEEEeCCEEEE
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVE 1271 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive 1271 (1303)
+||||||+.+|+|++.||||.+||.++.+.|.+.+++..++ ++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999987543 689999999999999999999999999543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=383.05 Aligned_cols=214 Identities=34% Similarity=0.555 Sum_probs=192.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecC-CCCHHHHhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK-NLKLEWLRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~~~~ 386 (1303)
.++++|++|+|+++ .++|+|+||+|++|+.++|+|+||||||||+++|.|++.|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999743 68999999999999999999999999999999999999999999999999998 4788999999
Q ss_pred eEEEeccc--ccccHhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 387 IGLVTQEP--ALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 387 i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
||||+|+| .+|..||.|.++||. ..+.+ ++.++++.+++.++.++- ..+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHHh
Confidence 99999999 799999999999995 34444 466777777777664443 45899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhhc
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|.+|..+|++||||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 5799999999999876 999999999999999999888764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=383.61 Aligned_cols=220 Identities=40% Similarity=0.729 Sum_probs=202.9
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcc
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
|.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999643 2359999999999999999999999999999999999999999999999999988888788899
Q ss_pred eEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 000751 1132 LGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA 1211 (1303)
Q Consensus 1132 i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p 1211 (1303)
++|+||+|.+|+.|++||+.++....+.+++.++++..++.+.+..+|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998875444566788899999999999999999999999888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEec
Q 000751 1212 PILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1212 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~G 1273 (1303)
++|||||||++||+.+...+.+.|++... ++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999998755 48999999999988899999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=370.44 Aligned_cols=206 Identities=32% Similarity=0.467 Sum_probs=173.8
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH---H-
Q 000751 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L- 383 (1303)
Q Consensus 309 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~- 383 (1303)
++++||++.|.... ..++|+++||+|++||++||+||||||||||+++|.|+-.|++|+|.++|.|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996322 246999999999999999999999999999999999999999999999999999987543 3
Q ss_pred hcceEEEecccccc-cHhHHHHHhcC----C-CC--CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 384 RSQIGLVTQEPALL-SLSIRDNIAYG----R-DA--TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 384 ~~~i~~v~Q~~~l~-~~ti~~ni~~~----~-~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
|++||||+|+..|+ +.|++|||.+. . .. ..++..+.++..++.+... ......||||||||+
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 45799999999988 57999999953 2 11 1334444555555544333 133458999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccccCEEEEEeCceEee
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFE 524 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~ 524 (1303)
||||||+.+|+|++.||||++||.++.+.+.+.+.++. .|+|+|+|||+......|||++.|.||++..
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999998884 4889999999999999999999999999543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=374.86 Aligned_cols=211 Identities=27% Similarity=0.500 Sum_probs=188.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++|+|.++ +||+||||+|++|+++||+||||||||||+++++|+.+|.+|+|.++|.+++.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999744 39999999999999999999999999999999999999999999999998776543 5789
Q ss_pred EEEccCC---ccCcccHHHHHHcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1133 GLVQQEP---IIFSTTIRENIIYARHN----------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1133 ~~VpQdp---~LF~gTIreNl~~g~~~----------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
|||||.. +-|+-||+|=+.+|... .+.+++.+||+.+++.++.. -++| .|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~----~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIG----ELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Cccc----ccCcHHHH
Confidence 9999954 67899999999887432 12478999999999998754 3555 69999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
|+.|||||+++|++|+|||||+++|+.++..+.+.|.++..+||||++|+|+++.+. .||+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 999999999999999999999999999999999999998877899999999999775 59999999 5678999999999
Q ss_pred hhc
Q 000751 1279 LAK 1281 (1303)
Q Consensus 1279 l~~ 1281 (1303)
+..
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 865
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=357.68 Aligned_cols=475 Identities=18% Similarity=0.248 Sum_probs=349.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccCChhhHHHHHHhhHHHHHHHHHHHHHH
Q 000751 775 CLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSI 854 (1303)
Q Consensus 775 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~ 854 (1303)
...+.++.++..+.+.+........+++...++|.++.++++..|+.-+.+ -+.++++.++.+|+..|. +-...++.
T Consensus 51 l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp~ 127 (546)
T COG4615 51 LPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLPE 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhHH
Confidence 334444444555566667778888999999999999999999999998865 678999999999999988 44455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchH-
Q 000751 855 FIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGN- 933 (1303)
Q Consensus 855 ~i~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI~a~~~~~- 933 (1303)
+.+.....+++.+...++++++.+++++.+.+..+..++......+.-+..++.+.+.....+..++|.+..+...-..
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~ 207 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAE 207 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHH
Confidence 7888888888888889999998888777666655544443333333345567777788888888899999887654322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHHHHHHHHHHHHHHHHHHHh
Q 000751 934 -KVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFG 1012 (1303)
Q Consensus 934 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012 (1303)
...+.|...-....+...+...+......+++.+.+....+.+|..-.. +.-+.....+..+.+.+.-.++.+..+
T Consensus 208 ~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vg 284 (546)
T COG4615 208 YVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVG 284 (546)
T ss_pred HHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHh
Confidence 2222232222222221111122222233445555555556665554332 222222334444555666778888899
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCC
Q 000751 1013 LAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSG 1092 (1303)
Q Consensus 1013 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sG 1092 (1303)
.+|.+..+..++.++.++...++..+-. ..... +.+..||++||.|+|++.. --+..||++|++||.|-|+|.+|
T Consensus 285 ilP~l~~AqvA~~kiakle~~~~~a~~~--~~q~~-p~~~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NG 359 (546)
T COG4615 285 ILPTLLTAQVAFNKIAKLELAPYKADFP--RPQAF-PDWKTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNG 359 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCccccCC--CCCcC-CcccceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCC
Confidence 9999999999999998776533322111 11111 2366899999999997542 35788999999999999999999
Q ss_pred CChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHHHHHHcCCCC-CCHHHHHHHHHHhch
Q 000751 1093 SGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN-ASEAEVKEAARIANA 1171 (1303)
Q Consensus 1093 SGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~-~~~~ei~~al~~a~l 1171 (1303)
|||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|.-|-+||+.++ |.+. ++++.+..-++...+
T Consensus 360 sGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel 433 (546)
T COG4615 360 SGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLEL 433 (546)
T ss_pred CcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998754 3333 677777777766555
Q ss_pred HHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhcCCcEEEEEec
Q 000751 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDT-LIMGNKTTILIAH 1250 (1303)
Q Consensus 1172 ~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~-~~~~~~TvI~IaH 1250 (1303)
....+ +.+|-=+. ..||-|||.|+|+--|++-+.+|++|||=-+--||.=.+...+.+-- +...|||++.|||
T Consensus 434 ~~kts-l~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH 507 (546)
T COG4615 434 AHKTS-LNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507 (546)
T ss_pred hhhhc-ccCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec
Confidence 44332 22332222 36999999999999999999999999999999999999998887653 3334899999999
Q ss_pred CchhHhhcCEEEEEeCCEEEEe
Q 000751 1251 RAAMMRHVDNIVVLNGGRIVEE 1272 (1303)
Q Consensus 1251 rl~ti~~~D~Iivl~~G~Ive~ 1272 (1303)
+-.....|||++.|++|+++|.
T Consensus 508 Dd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 508 DDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred CchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999985
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=370.52 Aligned_cols=198 Identities=33% Similarity=0.513 Sum_probs=176.8
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.+++++|+.+|++ ..||+||||+|++||+|+|+||||||||||++++.|+.+|++|+|.++|.++.... ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4889999999975 35999999999999999999999999999999999999999999999999886554 469
Q ss_pred EEEccCCccCc-ccHHHHHHcCCCCC------CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFS-TTIRENIIYARHNA------SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~-gTIreNl~~g~~~~------~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+||+|++.||+ -||+||+.++.... ..+...+.++.+||.+|-+..|. +||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHH
Confidence 99999999999 59999999875421 23467888999999999888875 89999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCch-hHhhcCEEEEEeC--CEE
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAA-MMRHVDNIVVLNG--GRI 1269 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~-ti~~~D~Iivl~~--G~I 1269 (1303)
||+.+|+|||||||.+|||+.|...+|+.+.+..++ ++||++|||+++ .+.-+|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999999999999999998876433 689999999997 4677999999999 555
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=350.75 Aligned_cols=209 Identities=27% Similarity=0.481 Sum_probs=188.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH---HHhhc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL---RWLRN 1130 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 1130 (1303)
|+|+||+.+|++. .++|+||||+|++||.+-++|||||||||++++|++...|++|+|.++|.|+..+.- -.||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999876 359999999999999999999999999999999999999999999999999988765 46899
Q ss_pred ceEEEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1131 HLGLVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
+||+|+||.-|+. -|+.||+.|.-. ..+ .+++.++++.+||.+-...+|. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 9999999998875 599999988632 122 3567889999999999999986 799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhc-CEEEEEeCCEEEEecCh
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~-D~Iivl~~G~Ive~Gt~ 1275 (1303)
|||++.+|++||-||||-+||+++...|++.+.+.-..|.|||+.||+.+.+..+ -|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 9999999999999999999999999999999998766689999999999999875 68999999999976554
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=363.66 Aligned_cols=213 Identities=30% Similarity=0.428 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCC---HHHHh
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK---LEWLR 384 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 384 (1303)
.|+++||+..|| +++.+|+||||+|++||++||+||||||||||++.|.|+.+|++|+|.++|.++...+ ...+|
T Consensus 3 ~i~~~nl~k~yp--~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecC--CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 489999999998 3568999999999999999999999999999999999999999999999999998887 55678
Q ss_pred cceEEEeccccccc-HhHHHHHhcCC-C-----------CCHHHH---HHHHHHhcchHHHHhcccccCccccCCCCCCC
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGR-D-----------ATLDQI---EEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~-~-----------~~~~~~---~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LS 448 (1303)
++||+++|++-|.. .||.+|++.|+ . .+.++- .++++..++.+. .-.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHHHhccCC
Confidence 89999999999885 79999999885 2 233333 333344444333 345667899
Q ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeec
Q 000751 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEM 525 (1303)
Q Consensus 449 gGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~ 525 (1303)
|||+||++|||||+++|+|++-|||+|+|||.+.+.+++.|++.. .|.|+|+.-|.++.++ .||||+-|++|+|+.+
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998764 6899999999999986 4999999999999999
Q ss_pred cChHHHhh
Q 000751 526 GTHDELLA 533 (1303)
Q Consensus 526 g~~~~l~~ 533 (1303)
|+.+|+-+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999643
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=403.64 Aligned_cols=223 Identities=28% Similarity=0.431 Sum_probs=189.9
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH---Hh
Q 000751 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (1303)
Q Consensus 309 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~~ 384 (1303)
|+++||+++|++.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 247999999999999999999999999999999999999999999999999999887654 57
Q ss_pred cceEEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
++|+||+|++.+|. .|++||+.++. ..+. +++.++++..++.+... .....||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999995 79999999863 2232 33455566666554433 344689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999988753 7999999999999865 99999999999999999999976
Q ss_pred cC--hhHHHHH
Q 000751 534 TG--DLYAELL 542 (1303)
Q Consensus 534 ~~--~~~~~~~ 542 (1303)
.. ..++++.
T Consensus 231 ~p~~~~~~~~~ 241 (343)
T TIGR02314 231 HPKTPLAQKFI 241 (343)
T ss_pred CCCcHHHHHHH
Confidence 42 3344444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=393.51 Aligned_cols=219 Identities=29% Similarity=0.490 Sum_probs=193.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743223599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--ccCcccHHHHHHcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1133 GLVQQEP--IIFSTTIRENIIYARHN--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1133 ~~VpQdp--~LF~gTIreNl~~g~~~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
+||+|+| .++..||+|||.++... .+ ++.+.++++.+++.++.+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 35678999999876321 22 245677888888877665544 48999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
|||+++|+||||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+..||+|++|++|++++.|+++++....
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 9999999999999999999999999999999987543 69999999999988889999999999999999999987653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=360.73 Aligned_cols=216 Identities=31% Similarity=0.507 Sum_probs=190.0
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---HHHhh
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN---LRWLR 1129 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~lR 1129 (1303)
.|+++||+.+||+.. .+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|.++|.++..+. ++.+|
T Consensus 3 ~i~~~nl~k~yp~~~--~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGGH--QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCCc--eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 489999999998543 5999999999999999999999999999999999999999999999999999887 67788
Q ss_pred cceEEEccCCccCc-ccHHHHHHcCCCC-----------CCH---HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCC
Q 000751 1130 NHLGLVQQEPIIFS-TTIRENIIYARHN-----------ASE---AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~-gTIreNl~~g~~~-----------~~~---~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1194 (1303)
++||+|+|+|.|-+ -|+.+|+..|+-. .+. ....+|++.+|+.+..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 99999999999886 5999999876432 233 34567788888877653 2345899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEeCCEEEEe
Q 000751 1195 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEE 1272 (1303)
Q Consensus 1195 gGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~ 1272 (1303)
|||+||++|||||.++|+|+|-|||+|+|||.+.+.|++.|++..+ +|.|+|+.-|.++..+ .||||+-|++|+|+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 9999999999999999999999999999999999999999997643 3689999999999875 5999999999999999
Q ss_pred cChHHHhhc
Q 000751 1273 GTHDSLLAK 1281 (1303)
Q Consensus 1273 Gt~~eLl~~ 1281 (1303)
|++.||-+.
T Consensus 230 g~~~el~~~ 238 (258)
T COG3638 230 GPASELTDE 238 (258)
T ss_pred CChhhhhHH
Confidence 999996543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=359.71 Aligned_cols=224 Identities=29% Similarity=0.512 Sum_probs=192.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHH---Hhh
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR---WLR 1129 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR 1129 (1303)
.|++++|+++|.++ .||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 69999999999654 499999999999999999999999999999999999999999999999999999874 569
Q ss_pred cceEEEccCCccCcc-cHHHHHHcCCC---CCCHHHHHH----HHHHhchHHH-HHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1130 NHLGLVQQEPIIFST-TIRENIIYARH---NASEAEVKE----AARIANAHHF-ISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~g-TIreNl~~g~~---~~~~~ei~~----al~~a~l~~~-I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
+++|+++|+--||+. ||+||+.|.-. ..+++++.+ .++.+||... .+.+| ..||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999975 99999998632 234444443 4566666655 33344 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHH
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
.|||||+.-+|+|+++|||||+|||-+...+-+.|+++... +.|+|+|||+++++. .||||+++.+|+|+..|+++||
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999988888766332 689999999998765 5899999999999999999999
Q ss_pred hhcCc-hhHHHHh
Q 000751 1279 LAKNG-LYVRLMQ 1290 (1303)
Q Consensus 1279 l~~~g-~y~~l~~ 1290 (1303)
.+.+. ..++.++
T Consensus 234 ~~sd~P~v~qf~~ 246 (263)
T COG1127 234 LASDDPWVRQFFN 246 (263)
T ss_pred HhCCCHHHHHHhc
Confidence 98744 4455444
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=386.03 Aligned_cols=212 Identities=32% Similarity=0.526 Sum_probs=184.9
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccc-----cCCccEEEECCeeCCCCC--HH
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY-----DPVAGQVLLDGRDLKLYN--LR 1126 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~-----~~~~G~I~idG~di~~~~--~~ 1126 (1303)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|++ +|.+|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5789999999753 4999999999999999999999999999999999999 999999999999998877 66
Q ss_pred HhhcceEEEccCCccCcccHHHHHHcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1127 WLRNHLGLVQQEPIIFSTTIRENIIYARHN---AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~~---~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
.+|++++|+||++.+|+.|++||+.++... .. ++++.++++..++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999875321 11 2456677777777655443321 3589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
|++||||++++|++|||||||++||+.+.+.+.+.|++...+ +|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999988665 89999999999875 5999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=397.17 Aligned_cols=221 Identities=23% Similarity=0.428 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCC-------
Q 000751 308 NIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL------- 378 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------- 378 (1303)
.|+++|++|+|++.. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999996321 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcceEEEeccc--ccccHhHHHHHhcCC---CCCHHHHHHHHHHhcchHHHHhcccccC-ccccCC
Q 000751 379 ---------KLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRA 443 (1303)
Q Consensus 379 ---------~~~~~~~~i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~vg~~ 443 (1303)
+...+|++|+||+|+| .+|+.||+|||.++. ..+.++..+. +.+.++.+ |++ ...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCC
Confidence 3467889999999998 799999999999874 2343333221 12334444 554 456778
Q ss_pred CCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccc-cccCEEEEEeCce
Q 000751 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLI-RNADYIAVMDEGR 521 (1303)
Q Consensus 444 g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~-~~~d~i~~l~~G~ 521 (1303)
+.+||||||||++|||||+++|+||||||||++||+.+++.+.+.|.++. +++|+|+|||+++.+ ..||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998764 589999999999987 5699999999999
Q ss_pred EeeccChHHHhhcC
Q 000751 522 LFEMGTHDELLATG 535 (1303)
Q Consensus 522 i~~~g~~~~l~~~~ 535 (1303)
+++.|+++++....
T Consensus 254 i~~~g~~~~~~~~~ 267 (320)
T PRK13631 254 ILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEeCCHHHHhcCH
Confidence 99999999987643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=379.67 Aligned_cols=475 Identities=16% Similarity=0.153 Sum_probs=343.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc---CChhhHHHHHHhhHHHHHHHHH
Q 000751 773 KWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEE---NSADTLSMRLANDATFVRAAFS 849 (1303)
Q Consensus 773 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~---~~~g~l~~rl~~D~~~i~~~~~ 849 (1303)
..+.+|.+++.+..+....+.|+......++..-+-+.+.++-+...-.|+.... +.....-+|+..|+...-+...
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 3456666667777777777888888889999999999999998887755543322 2234566899999988777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 850 NRLSIFIQDSAAVIVAVIIGML---------------LEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASL 914 (1303)
Q Consensus 850 ~~l~~~i~~~~~~i~~~~~~~~---------------~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1303)
.....++.++.+++.-..++.- +...+.++++..+++-.+......+.+.+..-+..+.++..+.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 6555666666655544444331 2222333333334443444444444454555566667777777
Q ss_pred HHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCccCHHHHH
Q 000751 915 VLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTAL 994 (1303)
Q Consensus 915 ~~~e~l~gi~tI~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~ 994 (1303)
.+...-++.+.|-.|+-|+...++.+...........+..........+.....++...+-+..++.....|.+++|+++
T Consensus 247 ~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lm 326 (604)
T COG4178 247 SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLM 326 (604)
T ss_pred HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHH
Confidence 78888889999999998887766666555554443332222222222233333333333444445556678999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCCC--CC---CCCCcccEEEEeeEEECCCCC
Q 000751 995 KEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVP--KIDPDDSSA--VK---PPNVYGSIELKNVDFCYPSRP 1067 (1303)
Q Consensus 995 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~--~~---~~~~~g~I~~~~Vsf~Y~~~~ 1067 (1303)
..-.++.....+++......+.+..-.+...|+.++.+... +.++..... .. .......|+|+|++..-|+..
T Consensus 327 qa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~ 406 (604)
T COG4178 327 QAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCC
Confidence 88888888777777777777777777777777766653321 111111101 00 000146799999999988654
Q ss_pred CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcccHH
Q 000751 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIR 1147 (1303)
Q Consensus 1068 ~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~gTIr 1147 (1303)
+.|+++||+|+|||.+-|.|+||||||||+++|.|+++-.+|+|..-.. +.+-|+||.|++-.||+|
T Consensus 407 --~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLr 473 (604)
T COG4178 407 --TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLR 473 (604)
T ss_pred --eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHH
Confidence 5899999999999999999999999999999999999999999866511 358999999999999999
Q ss_pred HHHHcCCCC--CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 000751 1148 ENIIYARHN--ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225 (1303)
Q Consensus 1148 eNl~~g~~~--~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~ 1225 (1303)
|-|+|++.. .+|+++.++|.+|+|.++++++.+-- .-..-||+|||||||+||.++++|++++|||||||||+
T Consensus 474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 999998764 78999999999999999999975322 24557999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeC
Q 000751 1226 ESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266 (1303)
Q Consensus 1226 ~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~ 1266 (1303)
++|..+.+.+++... +.|+|.|+||.....-.++.+-+++
T Consensus 549 ~~e~~l~q~l~~~lp-~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 549 ETEDRLYQLLKEELP-DATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHHhhCC-CCEEEEeccchhhHHHHhhheeecc
Confidence 999999999998765 5999999999988877777666543
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=379.28 Aligned_cols=218 Identities=42% Similarity=0.648 Sum_probs=200.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
+|+++|++++|++ .+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++.+
T Consensus 2 ~l~~~~l~~~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCC-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 5899999999953 235699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCC
Q 000751 388 GLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (1303)
Q Consensus 388 ~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ 466 (1303)
+|++|++.+|..|++||+.++. ..+.+++.+.++..++.+.+..+|.|++|.+......||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999899999999875 445667888889999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeecc
Q 000751 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 467 ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g 526 (1303)
+|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999887678999999999988889999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=385.45 Aligned_cols=210 Identities=20% Similarity=0.334 Sum_probs=169.0
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.+++.+|+|.|+.... +.++++++.+..-.++++||++|+||||+++++.+-..|..|.+-+.+ |.+|
T Consensus 362 ~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred eeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 5899999999975543 689999999999999999999999999999999999999999998876 4789
Q ss_pred EEEccCCccC-cccH--HHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1133 GLVQQEPIIF-STTI--RENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1133 ~~VpQdp~LF-~gTI--reNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
+|-.|..+=| +-.+ -|-+.-..|..+++|+++.|...|+...+..-+ + ..||||||-|+++|-....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s------i----~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS------I----ASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc------c----cccCCcchhHHHHHHHhcC
Confidence 9999976533 2222 111111233458999999998887755443221 1 3699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEe-cChHHHhhcCchhHH
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEE-GTHDSLLAKNGLYVR 1287 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~-Gt~~eLl~~~g~y~~ 1287 (1303)
+|.+|+|||||..||.++-..+-++|+.. +.-||+|||+.+.+.. |+.++|.++|+|.-. |+ ...|.+
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~-------~~~yKk 569 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGG-------IDKYKK 569 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeecc-------HHHHHH
Confidence 99999999999999999999999999875 3589999999999875 999999999999762 22 124666
Q ss_pred HHhhhhh
Q 000751 1288 LMQPHYG 1294 (1303)
Q Consensus 1288 l~~~~~~ 1294 (1303)
+...+..
T Consensus 570 l~~~e~~ 576 (582)
T KOG0062|consen 570 LLGAELR 576 (582)
T ss_pred HHHHHHh
Confidence 6665543
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=381.55 Aligned_cols=219 Identities=47% Similarity=0.807 Sum_probs=199.6
Q ss_pred CcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhh
Q 000751 1050 VYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1050 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 1129 (1303)
..+.|+++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999754223599999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1130 NHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
++++|+||+|.+|++|++||+.++.......++.+..+..+++++++.+|.|+++.+.....+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998754444556666677778899999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEE
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRI 1269 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~I 1269 (1303)
+|++|||||||++||+++.+.+.+.|++... ++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998754 5899999999999989999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=382.39 Aligned_cols=464 Identities=15% Similarity=0.124 Sum_probs=352.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCchh------HHHHHHhhHHHHHHHHHHHH
Q 000751 36 IVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGD------IVSQVLSDVLLIQSALSEKV 109 (1303)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~G~------l~sr~~~Dv~~i~~~~~~~~ 109 (1303)
+..+++....+...+.++......+.-..+-+.+.++.+.....|+.. ..|. .=.|+..|+..+-+.-....
T Consensus 92 f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~ 169 (604)
T COG4178 92 FAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTLDLS 169 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHHHHH
Confidence 333444444555556666555555555666667777777777444443 3332 23799999998888777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000751 110 GNYIHNMATFFSGLAIAFVNC---------------WQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAE 174 (1303)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~---------------~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1303)
..++.++++.+...+++.-++ ..+..++++.+++..++..++++.+.+.+-+.++..+.......
T Consensus 170 ~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lv 249 (604)
T COG4178 170 FGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLV 249 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 667776666555555554211 12223333344444455557777777888888888888888888
Q ss_pred HHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHH
Q 000751 175 QAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTAL 254 (1303)
Q Consensus 175 e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~~~g~l~~~~ 254 (1303)
..-++...|-.|+.|+.++++.++......+...+..........+......++.++-+.++......|+++.|.++...
T Consensus 250 rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~ 329 (604)
T COG4178 250 RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAV 329 (604)
T ss_pred HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHH
Confidence 89999999999999999999888777766665544444443344444444555555555667777889999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCCCCCCCCC---CCCCCccEEEEEEEEEcCCCCCCC
Q 000751 255 FAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRS------SSTTNYDGNT---LPSVHGNIEFRNVYFSYLSRPEIP 325 (1303)
Q Consensus 255 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~------~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~~~~~~ 325 (1303)
..+......+..+...+..+..-++...|+.++.+.- .+........ ....+..|+++|++..-|+ +..
T Consensus 330 ~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~--~~~ 407 (604)
T COG4178 330 GAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPD--GQT 407 (604)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCC--CCe
Confidence 8888888889999999999999999999999886321 1111110000 0111467999999999874 347
Q ss_pred cccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHH
Q 000751 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNI 405 (1303)
Q Consensus 326 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni 405 (1303)
.|++.||++++|+.+.|.||||||||||++.|+|+++--+|+|..-.. ..+-|+||.|++-.||.||-|
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre~l 476 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREAL 476 (604)
T ss_pred eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHHHH
Confidence 999999999999999999999999999999999999999999876521 358999999999999999999
Q ss_pred hcCC---CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHH
Q 000751 406 AYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482 (1303)
Q Consensus 406 ~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~ 482 (1303)
+|.+ +++++++.+++.+|+|.++++++.+-. .-..-||+|||||+|+||.++++|++++|||+|||||+++|
T Consensus 477 ~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e 551 (604)
T COG4178 477 CYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETE 551 (604)
T ss_pred hCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHH
Confidence 9986 388999999999999999999975422 24457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeC
Q 000751 483 RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (1303)
Q Consensus 483 ~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~ 519 (1303)
..+.+.+++...+.|+|-|.||.......++.+-+++
T Consensus 552 ~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 552 DRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 9999999999899999999999998877777665543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=371.60 Aligned_cols=209 Identities=27% Similarity=0.480 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++|+|.+ + ++|+||||++++|++++|+||||||||||+|+|+|+..|.+|+|.+.|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 5899999999952 3 69999999999999999999999999999999999999999999999988765432 4689
Q ss_pred EEEeccc---ccccHhHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 388 GLVTQEP---ALLSLSIRDNIAYGRD-----------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 388 ~~v~Q~~---~l~~~ti~~ni~~~~~-----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
|||||.. |-|..||+|-+.+|+- .+.+++.+|++.+++.++..+ .+ ..|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i----~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QI----GELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cc----cccCcHHHH
Confidence 9999965 5688999999999841 134789999999998876532 33 369999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~-~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
|+.|||||+++|++|+|||||+++|+.++..+.+.|.++++ |+||++|||+++.+. .+|+|+.|+ ++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999998864 899999999999876 599999995 567889999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=361.53 Aligned_cols=216 Identities=26% Similarity=0.426 Sum_probs=182.9
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCC-CHHHHhc
Q 000751 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL-KLEWLRS 385 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-~~~~~~~ 385 (1303)
.++++|+++.|+... -.++|+||||+|.+||+++|||+||||||||+++|+|+.+|++|+|.++|.++... .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999996321 01499999999999999999999999999999999999999999999999776543 3446788
Q ss_pred ceEEEeccccc-cc--HhHHHHHh----cC-CCCCHHHHHHHHHHhcchH-HHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 386 QIGLVTQEPAL-LS--LSIRDNIA----YG-RDATLDQIEEAAKIAHAHT-FISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 386 ~i~~v~Q~~~l-~~--~ti~~ni~----~~-~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
.|-+|+|||.- +| -||++-|. .. .+-.+.++.++++..++.+ +..+.| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999962 22 46655554 32 2344566888888888854 445555 479999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC--CeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLG--RSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~--~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
|||||.-+|++||||||||+||+.....|.+.+.+++++ -|.|+|||+++.+.+ ||||+||++|+|+|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999999999999888764 599999999999986 99999999999999999999887
Q ss_pred c
Q 000751 534 T 534 (1303)
Q Consensus 534 ~ 534 (1303)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 6
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=381.18 Aligned_cols=222 Identities=32% Similarity=0.508 Sum_probs=190.7
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFGK---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 48999999999643 499999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCccCcccHHHHHHcCCCC--CCHHHHHHHHHHhchH-HHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1133 GLVQQEPIIFSTTIRENIIYARHN--ASEAEVKEAARIANAH-HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1133 ~~VpQdp~LF~gTIreNl~~g~~~--~~~~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
+|+||+|.+|+.|++||+.++... ..++++.+.++..++. +.. ......||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999875321 1234555666665553 222 23455899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhcCc-hhH
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAKNG-LYV 1286 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~~g-~y~ 1286 (1303)
+|++|||||||++||+.+.+.+.+.|++..+ .++|+|++||+++.+. .||+|++|++|++++.|+++++..... .|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999998754 2689999999999876 599999999999999999999986532 344
Q ss_pred HH
Q 000751 1287 RL 1288 (1303)
Q Consensus 1287 ~l 1288 (1303)
+.
T Consensus 229 ~~ 230 (241)
T PRK14250 229 KL 230 (241)
T ss_pred HH
Confidence 43
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=388.54 Aligned_cols=214 Identities=31% Similarity=0.549 Sum_probs=189.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 2599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCC--ccCcccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1133 GLVQQEP--IIFSTTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1133 ~~VpQdp--~LF~gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
+||||+| .+|..|++||+.++.. ..+ ++++.++++.+++.++..+.|. .||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY-----------HLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh-----------hCCHHHHHHHHHH
Confidence 9999998 6888999999987632 122 2456778888888776655542 7999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHh
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
|||+++|++|||||||++||+.+...+.+.|++...+++|+|++||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 999999999999999999999999999999998755469999999999987 569999999999999999987653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=391.58 Aligned_cols=214 Identities=29% Similarity=0.538 Sum_probs=193.8
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+.+|.+ ..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 6999999999972 3699999999999999999999999999999999999999999999999999999886 4799
Q ss_pred EEEccCCccCc-ccHHHHHHcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1133 GLVQQEPIIFS-TTIRENIIYARH---NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1133 ~~VpQdp~LF~-gTIreNl~~g~~---~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
++|+|+..||+ .||+|||.||.. ...+ +.+.++++.+++.++-.+.|. +|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHHH
Confidence 99999999997 699999999965 1122 367889999999888777664 8999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCch-hHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAA-MMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~-ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
|||..+|++||||||.||||.+-...++..+++..++ +.|.|+|||+-+ .+..+|||+||++|+|...|+|+|+..+.
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999999999999999876433 689999999875 67889999999999999999999999874
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=398.38 Aligned_cols=217 Identities=32% Similarity=0.531 Sum_probs=185.9
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH---hh
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW---LR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 1129 (1303)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 246999999999999999999999999999999999999999999999999999887654 57
Q ss_pred cceEEEccCCccCc-ccHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1130 NHLGLVQQEPIIFS-TTIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~-gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
++|+||||++.+|+ .|++||+.++.. ..+. +++.++++..++.++.. ....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999986 699999987532 1222 23455555555544433 233589999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhh
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
|||||+++|+|||||||||+||+.+.+.+.+.|++..++ ++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999987543 6899999999998765 99999999999999999999986
Q ss_pred c
Q 000751 1281 K 1281 (1303)
Q Consensus 1281 ~ 1281 (1303)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=390.30 Aligned_cols=219 Identities=31% Similarity=0.516 Sum_probs=186.0
Q ss_pred EEEEeeEEECCCCC--CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC--HHHhh
Q 000751 1054 IELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN--LRWLR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--~~~lR 1129 (1303)
|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997422 135999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEccCC--ccCcccHHHHHHcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1130 NHLGLVQQEP--IIFSTTIRENIIYARH--NASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1130 ~~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
++|+||||+| .+|+.|++|||.++.. ..+.+ ++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 9999999998 5789999999987532 23333 345566665553 00223344568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
+|||||+.+|+||||||||++||+.+...+.+.|+++.++ ++|+|+|||+++.+ ..||+|++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999987543 68999999999987 469999999999999999999987
Q ss_pred hc
Q 000751 1280 AK 1281 (1303)
Q Consensus 1280 ~~ 1281 (1303)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=389.44 Aligned_cols=217 Identities=22% Similarity=0.428 Sum_probs=184.9
Q ss_pred EEEEeeEEECCCCCC--cceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCC----CCHHH
Q 000751 1054 IELKNVDFCYPSRPE--VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL----YNLRW 1127 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~----~~~~~ 1127 (1303)
|+++||+|+|+.... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhcceEEEccCC--ccCcccHHHHHHcCCCC--CCHH----HHHHHHHHhchH-HHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1128 LRNHLGLVQQEP--IIFSTTIRENIIYARHN--ASEA----EVKEAARIANAH-HFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1128 lR~~i~~VpQdp--~LF~gTIreNl~~g~~~--~~~~----ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
+|++++||+|+| .+|+.|+.||+.++... .+.+ ++.++++.+++. ++. .....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFW-----------EKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhc-----------cCCcccCCHHHH
Confidence 899999999998 79999999999876421 2232 344555555552 222 233458999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+.++|+|+|||+++.+ ..||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999988755568999999999977 5699999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8754
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=397.50 Aligned_cols=215 Identities=26% Similarity=0.469 Sum_probs=190.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++. .++|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 38999999999422 3599999999999999999999999999999999999999999999999999987764 4789
Q ss_pred EEEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+||+|++.+|+ .|++|||.|+.. ..+ .+++.++++..++.++..+.|. +||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR-----------ELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh-----------hCCHHHHHHHHHHH
Confidence 99999999996 599999998743 122 2456788888888877766653 89999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
||+++|+|||||||||+||+.+...+.+.|++..++ +.|+|+|||+++.+ ..||+|++|++|++++.|++++++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999987543 68999999999865 569999999999999999999998763
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=382.87 Aligned_cols=218 Identities=28% Similarity=0.464 Sum_probs=190.5
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCCHHHhh
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD---PVAGQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~lR 1129 (1303)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 259999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cceEEEccCCccCcccHHHHHHcCCC--------CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1130 NHLGLVQQEPIIFSTTIRENIIYARH--------NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~gTIreNl~~g~~--------~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
++++|+||+|.+|+.|++||+.++.. ...++++.++++.+++.+++.. .....+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 99999999999999999999987521 1112346677777777555432 23445678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
+||||++++|+||||||||++||+.+...+.+.|++... ++|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999998754 699999999999775 699999999999999999999986
Q ss_pred c
Q 000751 1281 K 1281 (1303)
Q Consensus 1281 ~ 1281 (1303)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 4
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=370.33 Aligned_cols=212 Identities=27% Similarity=0.476 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCe---ecCCCCHHHHh
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE---NIKNLKLEWLR 384 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~---~~~~~~~~~~~ 384 (1303)
.|+++|+++.|+ ..++++||||.|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 478899999995 457999999999999999999999999999999999999999999999999 555533 334
Q ss_pred cceEEEecccccc-cHhHHHHHhcCCC---------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHH
Q 000751 385 SQIGLVTQEPALL-SLSIRDNIAYGRD---------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~-~~ti~~ni~~~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqr 454 (1303)
++||+|+|+.-|| +.||++||+||.. ....++.+.++.++|...-++.| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 6899999999998 6999999999951 22345667777888776655555 4799999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccc-cccCEEEEEeCceEeeccChHHH
Q 000751 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 455 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
+||||||..+|++|+||||+++||++..+.+.+.|++.. -|.|+++|||+.+.+ +.||||++|++|+|...|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999998887764 389999999999876 56999999999999999999999
Q ss_pred hhcC
Q 000751 532 LATG 535 (1303)
Q Consensus 532 ~~~~ 535 (1303)
....
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 7654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=382.17 Aligned_cols=213 Identities=31% Similarity=0.455 Sum_probs=182.3
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH---HHHhc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~~~ 385 (1303)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 47899999995 3469999999999999999999999999999999999999999999999999987664 56788
Q ss_pred ceEEEecccccccH-hHHHHHhcCC----CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 386 QIGLVTQEPALLSL-SIRDNIAYGR----DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 386 ~i~~v~Q~~~l~~~-ti~~ni~~~~----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
.|+||+|++.+|.. |++||+.++. ..+.+ ++.++++..++.++ .......||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 99999999999875 9999998763 12332 23444444444332 33444689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988753 7999999999998764 99999999999999999998865
Q ss_pred cC
Q 000751 534 TG 535 (1303)
Q Consensus 534 ~~ 535 (1303)
..
T Consensus 227 ~~ 228 (235)
T cd03261 227 SD 228 (235)
T ss_pred CC
Confidence 43
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=396.54 Aligned_cols=214 Identities=27% Similarity=0.489 Sum_probs=188.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999964 3599999999999999999999999999999999999999999999999999887653 5789
Q ss_pred EEEccCCccCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+||+|++.+|+. |++|||.|+.. ..+ ++++.++++..++.++..+.| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999998742 122 345677788888766654444 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
||+++|+|||||||||+||+.+...+.+.|+++.++ ++|+|+|||+++.+ ..||+|+||++|+|++.|+++++.++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999987543 68999999999876 569999999999999999999998763
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=396.13 Aligned_cols=201 Identities=29% Similarity=0.480 Sum_probs=179.2
Q ss_pred ceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh----hcceEEEccCCccCc-c
Q 000751 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL----RNHLGLVQQEPIIFS-T 1144 (1303)
Q Consensus 1070 ~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l----R~~i~~VpQdp~LF~-g 1144 (1303)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||.|+..++...+ |++++||+|++.+|+ .
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 59999999999999999999999999999999999999999999999999999998887 789999999999997 5
Q ss_pred cHHHHHHcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000751 1145 TIRENIIYARHN--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE 1218 (1303)
Q Consensus 1145 TIreNl~~g~~~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDE 1218 (1303)
||+|||.++... .+ .+++.++++.+++.++..+.| .+||||||||++|||||+++|+||||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999876321 12 345667777777766655444 4899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1219 ASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1219 aTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|||+||+.+.+.+++.+.++.+. ++|+|+|||+++.+ +.||+|++|++|++++.|++++++++
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999999876432 68999999999865 66999999999999999999999876
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=386.56 Aligned_cols=218 Identities=31% Similarity=0.507 Sum_probs=193.0
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999643 23599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--ccCcccHHHHHHcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1133 GLVQQEP--IIFSTTIRENIIYARHN--ASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1133 ~~VpQdp--~LF~gTIreNl~~g~~~--~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
+|+||+| .+++.|++|||.++... .+. +++.++++.+++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 46678999999875321 222 34677788888877776655 37999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
|||+.+|+||||||||++||+.+...+.+.|++..++ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999999999999999999999999999987643 68999999999998899999999999999999999987653
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=385.81 Aligned_cols=220 Identities=27% Similarity=0.462 Sum_probs=192.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999753334599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--ccCcccHHHHHHcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1133 GLVQQEP--IIFSTTIRENIIYARH--NASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1133 ~~VpQdp--~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
+||||+| .+++.|+.|||.++.. ..+++ .+.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4778899999986532 22333 346677777776655443 347999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCc
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNG 1283 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g 1283 (1303)
|||+++|+||||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+..||+|++|++|++++.|+++++++..+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 9999999999999999999999999999999987553 689999999999988899999999999999999999986543
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=377.21 Aligned_cols=217 Identities=45% Similarity=0.743 Sum_probs=196.9
Q ss_pred CccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhc
Q 000751 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS 385 (1303)
Q Consensus 306 ~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 385 (1303)
.+.++++|++++|++..+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+....++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 45799999999996432346999999999999999999999999999999999999999999999999988777777888
Q ss_pred ceEEEecccccccHhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC
Q 000751 386 QIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (1303)
Q Consensus 386 ~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~ 464 (1303)
.|+||+|++.+|..|++||+.++. .....++.+......+.++++.+|.|+++.+.+...+||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999875 3444455555566778899999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceE
Q 000751 465 PSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (1303)
Q Consensus 465 ~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i 522 (1303)
|++|||||||++||+++...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999988778999999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=380.88 Aligned_cols=214 Identities=32% Similarity=0.499 Sum_probs=183.3
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---HHHhhc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN---LRWLRN 1130 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~---~~~lR~ 1130 (1303)
|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999742 35999999999999999999999999999999999999999999999999998876 567888
Q ss_pred ceEEEccCCccCc-ccHHHHHHcCCCC--------------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCCh
Q 000751 1131 HLGLVQQEPIIFS-TTIRENIIYARHN--------------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~-gTIreNl~~g~~~--------------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
+++|+||++.+|+ .|++||+.++... ..++++.++++..++.+. ......+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 9999999999887 6999999864321 112334455555555433 3344568999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
|||||++||||++++|+|||||||||+||+.+...+.+.|++..+ .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999999998754 2689999999999887 69999999999999999
Q ss_pred ChHHHhh
Q 000751 1274 THDSLLA 1280 (1303)
Q Consensus 1274 t~~eLl~ 1280 (1303)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9998743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=399.87 Aligned_cols=222 Identities=26% Similarity=0.429 Sum_probs=195.3
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 3599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcc-CcccHHHHHHcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1133 GLVQQEPII-FSTTIRENIIYARHN----------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1133 ~~VpQdp~L-F~gTIreNl~~g~~~----------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
+||||++.+ |+.|++||+.++... .+.+.+.++++.+++.++..+. ..+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHH
Confidence 999999987 678999999876421 1234578888888887665432 347999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
+|||||+++|+||||||||++||+.+...+++.|+++.++++|+|+++|+++.+ +.||||++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 999999999999999999999999999999999998765568999999999988 5699999999999999999999875
Q ss_pred cCchhHHHH
Q 000751 1281 KNGLYVRLM 1289 (1303)
Q Consensus 1281 ~~g~y~~l~ 1289 (1303)
. ....+++
T Consensus 229 ~-~~l~~~~ 236 (402)
T PRK09536 229 A-DTLRAAF 236 (402)
T ss_pred c-HHHHHHh
Confidence 4 2344443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=380.15 Aligned_cols=218 Identities=28% Similarity=0.494 Sum_probs=183.5
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh-hcce
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL-RNHL 1132 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 1132 (1303)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999964 259999999999999999999999999999999999999999999999999988877554 6789
Q ss_pred EEEccCCccCcc-cHHHHHHcCCCCC------------CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARHNA------------SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~~~------------~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
+||||+|.+|++ |++||+.++.... ..++.. ..+.+.++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREAR-----ERAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHH-----HHHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999986 9999998753211 011111 1123334433 4444445556689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+.++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999999875456899999999998855 999999999999999999998
Q ss_pred hhc
Q 000751 1279 LAK 1281 (1303)
Q Consensus 1279 l~~ 1281 (1303)
.+.
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=388.66 Aligned_cols=223 Identities=30% Similarity=0.515 Sum_probs=185.9
Q ss_pred cEEEEeeEEECCCCC--CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----CHH
Q 000751 1053 SIELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY----NLR 1126 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~ 1126 (1303)
.|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 13599999999999999999999999999999999999999999999999999754 346
Q ss_pred HhhcceEEEccCC--ccCcccHHHHHHcCCC--CCCHHHHHHHHHHhchHHHHHhCCCCccc-ccCCCCCCCChHHHHHH
Q 000751 1127 WLRNHLGLVQQEP--IIFSTTIRENIIYARH--NASEAEVKEAARIANAHHFISSLPHGYDT-HVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~I~~lp~Gldt-~vge~G~~LSgGQrQRl 1201 (1303)
.+|++|+||||+| .+|+.|++|||.++.. ..+.++..+.+ .+.+..+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7899999999998 6888999999987632 12333332211 2233332 5543 23445678999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
+|||||+.+|+||||||||++||+.+...+.+.|+++.. .++|+|+|||+++.+ ..||+|++|++|+|++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998743 368999999999987 469999999999999999999987
Q ss_pred hcC
Q 000751 1280 AKN 1282 (1303)
Q Consensus 1280 ~~~ 1282 (1303)
++.
T Consensus 235 ~~~ 237 (286)
T PRK13646 235 KDK 237 (286)
T ss_pred hCH
Confidence 653
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=378.13 Aligned_cols=212 Identities=29% Similarity=0.464 Sum_probs=181.9
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 3 l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGDF---VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECCE---EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 7899999999742 59999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEccCCccCc-ccHHHHHHcCCCC--C----C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARHN--A----S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~~--~----~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
||||+|.+|+ .|++||+.++... . + ++++.++++..++.++... ...+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----------YPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 9999999986 5999999875321 1 1 1234555666665444333 33589999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhh
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
|||||+++|++|||||||++||+++.+.+.+.|++..++ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999999999999987543 689999999999765 599999999999999999999976
Q ss_pred c
Q 000751 1281 K 1281 (1303)
Q Consensus 1281 ~ 1281 (1303)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 5
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=396.60 Aligned_cols=214 Identities=27% Similarity=0.417 Sum_probs=187.0
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 2489999999999999999999999999999999999999999999999999887764 6789
Q ss_pred EEEccCCccCc-ccHHHHHHcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFS-TTIRENIIYARHN--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~-gTIreNl~~g~~~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+||+|++.+|+ .|++||+.|+... .+ ++++.++++..++.++.++ ...+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERK-----------YPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhC-----------ChhhCCHHHHHHHHHHH
Confidence 99999999996 6999999987421 12 2345666666666555443 34589999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
||+++|++||||||||+||..+...+.+.|++..++ +.|+|+|||+++.+ ..||+|++|++|++++.|+++++.++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999987543 68999999999976 569999999999999999999999763
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=387.33 Aligned_cols=216 Identities=26% Similarity=0.432 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.++++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999632234699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecccc--cccHhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 388 GLVTQEPA--LLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 388 ~~v~Q~~~--l~~~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
+||+|+|. ++..||+|||.++. ..+. +++.++++..++.++.... ..+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999983 56789999999873 2333 3456666666666554433 358999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhc
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|||+.+|++|||||||++||+.+.+.+.+.++++.+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988753 8999999999999888999999999999999999888665
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=375.06 Aligned_cols=204 Identities=28% Similarity=0.510 Sum_probs=176.9
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHH---Hhhc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR---WLRN 1130 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~ 1130 (1303)
|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGGH-QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCCC-eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 78999999996431 3599999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ceEEEccCCccCc-ccHHHHHHcCCC--C----CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1131 HLGLVQQEPIIFS-TTIRENIIYARH--N----ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~-gTIreNl~~g~~--~----~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
+++|+||+|.+|. .|++||+.++.. . ..++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999987 599999986421 1 12345777888888766655444 3799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEE
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRI 1269 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~I 1269 (1303)
||||+++|+||||||||++||+.+.+.+.+.|++..+.++|+|+|||+++.+. .||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999987555689999999999886 5899999999975
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=374.64 Aligned_cols=214 Identities=29% Similarity=0.430 Sum_probs=180.1
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh-hcce
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL-RNHL 1132 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 1132 (1303)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGKS---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCCe---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 5799999999643 59999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEccCCccCcc-cHHHHHHcCCCCCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARHNASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVV 1207 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAl 1207 (1303)
+|+||++.+|++ |++||+.++....... ++.++++.. ..+++.++ .....||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~~~~~----~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLKERRK----QLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhhhhhh----CchhhCCHHHHHHHHHHHHH
Confidence 999999999986 9999998764322111 122222222 11222233 34558999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhh
Q 000751 1208 LKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1208 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
+++|++|||||||++||+.+...+.+.|++....++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999999987545689999999999865 599999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=376.91 Aligned_cols=217 Identities=33% Similarity=0.504 Sum_probs=185.3
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHH---Hhh
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR---WLR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR 1129 (1303)
|+++|++++|+++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997531 12599999999999999999999999999999999999999999999999999877654 357
Q ss_pred cceEEEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1130 NHLGLVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
++++|+||+|.+|. .|++||+.++.. ..+ .+++.++++..++.+...+ ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 89999999999997 699999986421 112 2345666666666554433 33589999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhh
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
||||++++|++|||||||++||+.+.+.+.+.|++..++ ++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999999987543 689999999999876 499999999999999999998865
Q ss_pred c
Q 000751 1281 K 1281 (1303)
Q Consensus 1281 ~ 1281 (1303)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=385.59 Aligned_cols=217 Identities=24% Similarity=0.471 Sum_probs=187.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCC--CCCHHHhhc
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLK--LYNLRWLRN 1130 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR~ 1130 (1303)
.|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 48999999999632 35999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ceEEEccCC--ccCcccHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1131 HLGLVQQEP--IIFSTTIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1131 ~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
+++|+||+| .+|+.|++||+.++.. ..+. +.+.++++..++.++. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 999999998 5789999999987532 1222 3456666777765443 2335589999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhh
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
|||||+.+|+||||||||++||+.+...+.+.|++..++ ++|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999987553 689999999999886 699999999999999999999876
Q ss_pred cC
Q 000751 1281 KN 1282 (1303)
Q Consensus 1281 ~~ 1282 (1303)
..
T Consensus 232 ~~ 233 (283)
T PRK13636 232 EK 233 (283)
T ss_pred CH
Confidence 43
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=396.05 Aligned_cols=213 Identities=24% Similarity=0.404 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 35799999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEeccccccc-HhHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
|||+|++.+|. .||+|||.|+.. .+. +++.++++..++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 799999998742 232 34566677777766655544 489999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhcC
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..+.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999988753 799999999998775 59999999999999999999997754
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=376.01 Aligned_cols=220 Identities=27% Similarity=0.420 Sum_probs=197.0
Q ss_pred CcccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhh
Q 000751 1050 VYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1050 ~~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR 1129 (1303)
..+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|.+|+|.+||
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 34579999999952 2499999999999999999999999999999999999999999999998
Q ss_pred cceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1130 NHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
+++|+||++.+|++|++||+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+.+||||||||++|||||++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999997643 24456677888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcCchhHHH
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEAL-DTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l-~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l 1288 (1303)
+|+||||||||++||+.+...+.+.+ +.... ++|+|+|||+++.+..||+|++|++|++++.|+++++.+....|.+.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 255 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMA-NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSK 255 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHH
Confidence 99999999999999999999888754 44433 68999999999999999999999999999999999998765666655
Q ss_pred H
Q 000751 1289 M 1289 (1303)
Q Consensus 1289 ~ 1289 (1303)
+
T Consensus 256 ~ 256 (282)
T cd03291 256 L 256 (282)
T ss_pred H
Confidence 5
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=377.60 Aligned_cols=210 Identities=33% Similarity=0.502 Sum_probs=181.3
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccC-----CCCCcEEEECCeecCCCC--HH
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY-----DPTLGEVLLDGENIKNLK--LE 381 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~~g~~~~~~~--~~ 381 (1303)
|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 57899999995 347999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhcceEEEecccccccHhHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 382 WLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~---~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
.++++|+|++|++.+|..|++||+.++.. . . ++++.++++..++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 67889999999999998899999987631 1 1 2345556666665544333211 4689999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHH
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDE 530 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 530 (1303)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+.+|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999999999998865589999999999876 599999999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=378.80 Aligned_cols=213 Identities=31% Similarity=0.477 Sum_probs=182.0
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH---HHhhc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL---RWLRN 1130 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 1130 (1303)
|+++||+++|+.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~~--~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPNG--KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCCC--cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 6899999999622 359999999999999999999999999999999999999999999999999987654 45788
Q ss_pred ceEEEccCCccCc-ccHHHHHHcCCCC--------------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCCh
Q 000751 1131 HLGLVQQEPIIFS-TTIRENIIYARHN--------------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~-gTIreNl~~g~~~--------------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
+++||||++.+|+ .|++||+.++... ..++++.++++..++.++. .....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 9999999999886 6999999865321 0123455556665554433 334558999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998754 2689999999999875 59999999999999999
Q ss_pred ChHHHh
Q 000751 1274 THDSLL 1279 (1303)
Q Consensus 1274 t~~eLl 1279 (1303)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=367.34 Aligned_cols=201 Identities=35% Similarity=0.591 Sum_probs=182.8
Q ss_pred EEEEeeEEECCCCCC--cceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcc
Q 000751 1054 IELKNVDFCYPSRPE--VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975421 2599999999999999999999999999999999999999999999999 6
Q ss_pred eEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 000751 1132 LGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA 1211 (1303)
Q Consensus 1132 i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p 1211 (1303)
|+||||+|.+|++|++||+.++.. .++++..++++.+++.+++..+|.|+++.+.....+||+|||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 4566788889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCE
Q 000751 1212 PILLLDEASSSIESESSRVVQE-ALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGR 1268 (1303)
Q Consensus 1212 ~ILlLDEaTSaLD~~te~~I~~-~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~ 1268 (1303)
+++||||||++||+++.+.+.+ .++...++++|+|++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 45555444689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=385.88 Aligned_cols=218 Identities=27% Similarity=0.458 Sum_probs=184.2
Q ss_pred EEEEeeEEECCCCC--CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCC----CCHHH
Q 000751 1054 IELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL----YNLRW 1127 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~----~~~~~ 1127 (1303)
|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhcceEEEccCC--ccCcccHHHHHHcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1128 LRNHLGLVQQEP--IIFSTTIRENIIYARH--NASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1128 lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
+|++++||||+| .+|+.|++|||.++.. ..+.+ .+.++++.+++.+.+ .......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 888999999998 6888999999987632 12333 344555555553211 12334589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
|++|||||+.+|+||||||||++||+.+...+.+.|++...+ +.|||+|||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999987543 689999999999874 699999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=393.90 Aligned_cols=213 Identities=29% Similarity=0.482 Sum_probs=186.3
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++.+.+. .|++|
T Consensus 2 ~L~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGRT---QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCCe---EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 38899999999743 49999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEccCCccCc-ccHHHHHHcCCC------CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1133 GLVQQEPIIFS-TTIRENIIYARH------NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1133 ~~VpQdp~LF~-gTIreNl~~g~~------~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
+||+|++.+|+ .|++||+.++.. ..+ ++++.++++..++.++..+.| ..||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 99999999997 599999998642 112 235566777777765554433 48999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
+|||||+++|++||||||||+||+.+...+.+.|+++.++ ++|+|+|||+++.+ ..||+|++|++|+|++.|++++++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999987554 68999999999875 459999999999999999999998
Q ss_pred hc
Q 000751 1280 AK 1281 (1303)
Q Consensus 1280 ~~ 1281 (1303)
++
T Consensus 226 ~~ 227 (353)
T PRK10851 226 RE 227 (353)
T ss_pred hC
Confidence 76
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=366.48 Aligned_cols=204 Identities=35% Similarity=0.553 Sum_probs=182.4
Q ss_pred cccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhc
Q 000751 1051 YGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130 (1303)
Q Consensus 1051 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~ 1130 (1303)
.+.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|.+|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPDL-PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCCC-cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 36799999999997432 25999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcC
Q 000751 1131 HLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~ 1210 (1303)
+++||||+|.+|++|++||+.+... .+++++.++++ +......|||||+||++||||++++
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999986543 34555544443 2345678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecCh
Q 000751 1211 APILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
|++|||||||++||+++.+.+.+.|++... ++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFT-NSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999998754 6999999999999888999999999999998874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=383.24 Aligned_cols=219 Identities=30% Similarity=0.463 Sum_probs=191.3
Q ss_pred cEEEEeeEEECCCCC---CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-HHHh
Q 000751 1053 SIELKNVDFCYPSRP---EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN-LRWL 1128 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~---~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~l 1128 (1303)
-|+++|++++|++.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 236999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcceEEEccCCc--cCcccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1129 RNHLGLVQQEPI--IFSTTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1129 R~~i~~VpQdp~--LF~gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
|++++||||+|. +|..|+.+|+.++.. ..+ ++++.++++.+++.++..+.| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 777799999987532 112 345777888888877766554 3899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHh
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
++|||||+++|++|||||||++||+.+...+.+.|+++.+ .++|+|+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999998754 268999999999999889999999999999999999997
Q ss_pred hcC
Q 000751 1280 AKN 1282 (1303)
Q Consensus 1280 ~~~ 1282 (1303)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 653
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=378.29 Aligned_cols=218 Identities=27% Similarity=0.443 Sum_probs=187.3
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTDF---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCCc---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 59999999999642 499999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN---AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~---~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++||||+|.+|+.|++|||.++... .+ ++.+.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 6788999999999999999999999875321 11 34456677777764433 233444 3458999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++|||||+++|++|||||||++||+.+...+.+.|++... ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998854 589999999999875 599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.++
T Consensus 236 ~~~~ 239 (254)
T PRK14273 236 LFFN 239 (254)
T ss_pred HHhC
Confidence 9865
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=370.71 Aligned_cols=204 Identities=33% Similarity=0.519 Sum_probs=174.9
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGSV---RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCCe---eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 5789999999642 59999999999999999999999999999999999999999999999999986543 567899
Q ss_pred EEccCCccCc-ccHHHHHHcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARHN--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
||||+|.+|. .|++||+.++... .+ ++++.++++..++.++.... ..+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999886 6999999865321 11 23456666666665554433 34799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
|+++|++|||||||++||+.+.+.+.+.|++..+ .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998754 3689999999999765 59999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=376.99 Aligned_cols=217 Identities=29% Similarity=0.485 Sum_probs=186.0
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCCC--CHH
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV-----AGQVLLDGRDLKLY--NLR 1126 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~-----~G~I~idG~di~~~--~~~ 1126 (1303)
|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|++||.++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999743 4999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HhhcceEEEccCCccCcccHHHHHHcCCC--C-CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1127 WLRNHLGLVQQEPIIFSTTIRENIIYARH--N-AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~-~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
.+|++++||||++.+|+.|++||+.++.. . .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77899999999999999999999986421 1 12 234566666666653321 1223344589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
|++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998765 489999999999875 5999999999999999999999
Q ss_pred hhc
Q 000751 1279 LAK 1281 (1303)
Q Consensus 1279 l~~ 1281 (1303)
.+.
T Consensus 231 ~~~ 233 (247)
T TIGR00972 231 FTN 233 (247)
T ss_pred HhC
Confidence 764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=376.13 Aligned_cols=240 Identities=25% Similarity=0.407 Sum_probs=206.0
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC
Q 000751 283 RLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 283 ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.+.+++..++++.+ ..+.+.....|+++|+++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++
T Consensus 16 ~~~~~~~~~~~~~~--~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 16 GFGELLEKAKQENN--DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred HHHHHHhccccccc--ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566655543222 22333445579999999952 369999999999999999999999999999999999999
Q ss_pred CCCcEEEECCeecCCCCHHHHhcceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccC
Q 000751 363 PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGR 442 (1303)
Q Consensus 363 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~ 442 (1303)
|++|+|.++| .|+|++|++++|+.|++||+.++....+.++.++++.+++.+.+..+|.++++.+++
T Consensus 89 p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 89 PSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred CCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecC
Confidence 9999999998 399999999999999999999876444556777788888999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCCccccccCEEEEEeCce
Q 000751 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (1303)
Q Consensus 443 ~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~-l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~ 521 (1303)
.+..||||||||++|||||+++|++|||||||++||+.+...+.+. ++.+.+++|+|++||+++.+..||++++|++|+
T Consensus 156 ~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~ 235 (282)
T cd03291 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGS 235 (282)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999988775 455666899999999999998899999999999
Q ss_pred EeeccChHHHhhcChhHHHHH
Q 000751 522 LFEMGTHDELLATGDLYAELL 542 (1303)
Q Consensus 522 i~~~g~~~~l~~~~~~~~~~~ 542 (1303)
+++.|+++++.+....|.+.+
T Consensus 236 i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 236 SYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEECCHHHHHhcchHHHHHH
Confidence 999999999886554454333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=385.03 Aligned_cols=218 Identities=24% Similarity=0.435 Sum_probs=184.0
Q ss_pred cEEEEeeEEECCCCCC--cceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCC--------
Q 000751 1053 SIELKNVDFCYPSRPE--VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL-------- 1122 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~-------- 1122 (1303)
.|+++||+++|++... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 3899999999975321 259999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHhhcceEEEccCC--ccCcccHHHHHHcCCC--CCCHH----HHHHHHHHhchH-HHHHh
Q 000751 1123 ----------------YNLRWLRNHLGLVQQEP--IIFSTTIRENIIYARH--NASEA----EVKEAARIANAH-HFISS 1177 (1303)
Q Consensus 1123 ----------------~~~~~lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~-~~I~~ 1177 (1303)
.+...+|++|+||||+| .+|..|++|||.++.. ..+.+ ++.++++.+++. ++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-- 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL-- 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh--
Confidence 13467889999999986 6888999999987642 22332 345556655553 232
Q ss_pred CCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-h
Q 000751 1178 LPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-R 1256 (1303)
Q Consensus 1178 lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~ 1256 (1303)
.....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++...++|+|+|||+++.+ .
T Consensus 160 ---------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 160 ---------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ---------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 234458999999999999999999999999999999999999999999998755579999999999866 5
Q ss_pred hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1257 HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1257 ~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
.||||++|++|+|++.|+++++.++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 6999999999999999999998765
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=393.22 Aligned_cols=215 Identities=25% Similarity=0.454 Sum_probs=188.6
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCc--cEEEECCeeCCCCCHHHhh
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA--GQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~--G~I~idG~di~~~~~~~lR 1129 (1303)
|.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECCe---EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 679999999999642 49999999999999999999999999999999999999999 999999999987665 36
Q ss_pred cceEEEccCCccCcc-cHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1130 NHLGLVQQEPIIFST-TIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~g-TIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
++|+||+|++.+|+. |++|||.|+.. ..+. +++.++++..++.++..+.| .+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999975 99999987632 1222 34666777777766655544 389999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC--CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHh
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG--NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~--~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
|||||+++|++||||||||+||+.+...+.+.|++..++ +.|+|+|||+++.+ ..||+|+||++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999987554 58999999999876 569999999999999999999998
Q ss_pred hcC
Q 000751 1280 AKN 1282 (1303)
Q Consensus 1280 ~~~ 1282 (1303)
++.
T Consensus 228 ~~p 230 (362)
T TIGR03258 228 DAP 230 (362)
T ss_pred hCc
Confidence 763
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=378.67 Aligned_cols=220 Identities=29% Similarity=0.484 Sum_probs=189.1
Q ss_pred cccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--C
Q 000751 1051 YGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--Y 1123 (1303)
Q Consensus 1051 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~ 1123 (1303)
.+.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCCe---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 3579999999999643 59999999999999999999999999999999999986 579999999999863 4
Q ss_pred CHHHhhcceEEEccCCccCcccHHHHHHcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChH
Q 000751 1124 NLRWLRNHLGLVQQEPIIFSTTIRENIIYARH---NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196 (1303)
Q Consensus 1124 ~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~---~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1196 (1303)
+...+|++++|+||+|.+|+.|++||+.++.. ..+ +++++++++.+++.+.+. ........+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56778999999999999999999999987532 122 234666777776643322 2334556689999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecCh
Q 000751 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1197 QrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
||||++||||++++|+||||||||++||+.+.+.+.+.|++... ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999998754 589999999999875 5999999999999999999
Q ss_pred HHHhhc
Q 000751 1276 DSLLAK 1281 (1303)
Q Consensus 1276 ~eLl~~ 1281 (1303)
+++.+.
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 999865
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=393.31 Aligned_cols=212 Identities=25% Similarity=0.466 Sum_probs=185.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 589999999994 35699999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEeccccccc-HhHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
+||+|++.+|. .||+|||.|+.. .+ .+++.++++..++.++.. .....||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHH
Confidence 99999999995 699999998741 22 234556666666654443 334589999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccc-cccCEEEEEeCceEeeccChHHHhhcC
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++++..+.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999988754 79999999999987 459999999999999999999997753
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=382.06 Aligned_cols=219 Identities=29% Similarity=0.471 Sum_probs=185.6
Q ss_pred EEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh----hc
Q 000751 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL----RN 1130 (1303)
Q Consensus 1055 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l----R~ 1130 (1303)
.++||+++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 258999999999999999999999999999999999999999999999999988776543 46
Q ss_pred ceEEEccCCccCc-ccHHHHHHcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1131 HLGLVQQEPIIFS-TTIRENIIYARH--NA----SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~-gTIreNl~~g~~--~~----~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
+++|+||+|.+|+ .|++||+.++.. .. .++++.++++.+++.+++.+.| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999985 699999986421 11 1345677788888877666554 3799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|||++++|+||||||||++||+.+.+.+.+.|++.... ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999987532 689999999999874 5999999999999999999999865
Q ss_pred -CchhHH
Q 000751 1282 -NGLYVR 1287 (1303)
Q Consensus 1282 -~g~y~~ 1287 (1303)
...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 334443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=370.13 Aligned_cols=208 Identities=26% Similarity=0.438 Sum_probs=177.8
Q ss_pred EEEEeeEEECCCCCC-cceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1054 IELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
|+++||+++|++... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975321 159999999999999999999999999999999999999999999999999975 456778999
Q ss_pred EEEccCCccCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+|+||+|.+|++ |++||+.+... ..+ ++++.++++..++.+... ....+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975421 112 234556666666655443 344589999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
|++++|++|||||||++||+.+.+.+.+.|++...+++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999987555689999999999765 59999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=392.24 Aligned_cols=214 Identities=31% Similarity=0.530 Sum_probs=190.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ ++++
T Consensus 14 ~L~l~~l~~~~~~~---~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECCe---EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 58999999999642 499999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEccCCccCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+||+|++.+|+. ||+|||.|+.. ..+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999998642 112 235677888888887777666 379999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
||+++|++||||||||+||..+...+.+.|++..++ +.|+|+|||+++.+ ..||+|++|++|+|++.|++++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999987543 68999999999875 569999999999999999999998763
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=371.83 Aligned_cols=211 Identities=21% Similarity=0.404 Sum_probs=180.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999742 135999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred EEccCCccC-cccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIF-STTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF-~gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
||+|+|.+| ..|++||+.++.. ..+ ++++.++++..++.+.. ++. ..+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKR----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hCh----hhhCCHHHHHHHHHHHH
Confidence 999999999 5799999976421 112 23455666666664433 232 34799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHH
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998765 599999999999886 5999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=381.04 Aligned_cols=217 Identities=28% Similarity=0.493 Sum_probs=190.3
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
++++||+++|++.. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGSK--EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCCC--ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 78999999996432 4999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCC--ccCcccHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1134 LVQQEP--IIFSTTIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1134 ~VpQdp--~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
||||+| .+|+.|++||+.++.. ..+. +.+.++++.+++.++..+.| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788999999986432 1232 34667777777776655443 379999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhcCc
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAKNG 1283 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~~g 1283 (1303)
||+.+|++|||||||++||+.+.+.+.+.+++...+ ++|+|++||+++.+ ..||+|++|++|++++.|+++++++...
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 230 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCHH
Confidence 999999999999999999999999999999987543 68999999999988 5799999999999999999999986543
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=378.80 Aligned_cols=218 Identities=27% Similarity=0.463 Sum_probs=187.4
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGDF---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECCe---eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 58999999999642 49999999999999999999999999999999999975 589999999999875 345
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCC--CC-----CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARH--NA-----SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-----~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++||||++.+|+.|++||+.++.. .. .++++.++++.+++.+.+.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999987521 11 13456667777777544321 23344568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+||||||||++||+.+...+.+.|++... ++|+|++||+++.+. .||+|++|++|+|++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998754 589999999999875 599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.+.
T Consensus 235 ~~~~ 238 (253)
T PRK14242 235 IFTR 238 (253)
T ss_pred HHcC
Confidence 9865
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=373.19 Aligned_cols=211 Identities=24% Similarity=0.410 Sum_probs=179.1
Q ss_pred cEEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH---h
Q 000751 1053 SIELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW---L 1128 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---l 1128 (1303)
.|+++||+++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 136999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEccCCccCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1129 R-NHLGLVQQEPIIFST-TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1129 R-~~i~~VpQdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
| +.++|+||+|.+|+. |++||+.++.. ..+ ++++.++++..++.+. ......+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3 679999999999975 99999986321 112 2345555665555433 333445899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhhcCEEEEEeCCEEEEecC
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt 1274 (1303)
++||||++++|+||||||||++||+.+...+.+.|++... +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999998743 3689999999999999999999999999998775
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=368.47 Aligned_cols=200 Identities=26% Similarity=0.504 Sum_probs=174.9
Q ss_pred EEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEE
Q 000751 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGL 1134 (1303)
Q Consensus 1055 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 1134 (1303)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999642 249999999999999999999999999999999999999999999999998864 456788999
Q ss_pred EccCC--ccCcccHHHHHHcCCCCC--CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcC
Q 000751 1135 VQQEP--IIFSTTIRENIIYARHNA--SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1135 VpQdp--~LF~gTIreNl~~g~~~~--~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~ 1210 (1303)
+||+| .+|+.|++||+.++.+.. .++++.++++..++.++..+.| ..||||||||++||||++++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467899999998764322 2356788888888876655444 37999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEE
Q 000751 1211 APILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIV 1270 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Iv 1270 (1303)
|++|||||||++||+.+.+.+.+.|++..++++|+|++||+++.+. .||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999987555789999999999886 59999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=377.26 Aligned_cols=217 Identities=28% Similarity=0.423 Sum_probs=189.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCeecCCCCHHHHh
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWLR 384 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~~ 384 (1303)
.|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+....|
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 378999999995 3479999999999999999999999999999999999985 6999999999999888888889
Q ss_pred cceEEEecccccccHhHHHHHhcCC---CC------CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 385 SQIGLVTQEPALLSLSIRDNIAYGR---DA------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~~ti~~ni~~~~---~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
+.|+|++|++.+|..|++||+.++. .. .++++.++++.+++.+++.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 9999999999999999999998763 11 12245566666666554432 24456778999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
+||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999988877999999999999875 5999999999999999999998653
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=365.01 Aligned_cols=203 Identities=33% Similarity=0.523 Sum_probs=181.9
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcc
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 386 (1303)
+.++++|++++|+. .+.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 5 ~~l~~~~l~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAP-DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCC-CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 46999999999963 22479999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCC
Q 000751 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (1303)
Q Consensus 387 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ 466 (1303)
|+||+|+|.+|++|++||+.+....+++++.++++ +......||||||||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999998765445444444332 345677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeeccCh
Q 000751 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (1303)
Q Consensus 467 ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~ 528 (1303)
++||||||++||+++...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999988778999999999999888999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=379.55 Aligned_cols=218 Identities=28% Similarity=0.525 Sum_probs=189.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 23599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--ccCcccHHHHHHcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1133 GLVQQEP--IIFSTTIRENIIYARH--NASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1133 ~~VpQdp--~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
+||||+| .+++.|++|||.++.. ..+.+ .+.++++..++.++..+. ..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4567899999987532 12333 345566667776655443 358999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
|||+++|++|||||||++||+.+.+.+.+.|++..++ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999999987543 48999999999988899999999999999999999887643
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=369.75 Aligned_cols=210 Identities=24% Similarity=0.390 Sum_probs=181.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECCE---EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 5799999999643 599999999999999999999999999999999999999999999999998763 356788999
Q ss_pred EEccCCccCcc-cHHHHHHcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYARH--NA----SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~--~~----~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||++.+|+. |++||+.++.. .. .++++.++++..++.++..+.| .+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999998875 99999976421 11 1345677777777766554332 3799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHH
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
++.+|++|||||||++||+++.+.+.+.|++..++ ++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999987554 689999999999876 5999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=371.99 Aligned_cols=217 Identities=28% Similarity=0.488 Sum_probs=182.1
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999964 35999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEccCCcc-CcccHHHHHHcCCC--CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcC
Q 000751 1134 LVQQEPII-FSTTIRENIIYARH--NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1134 ~VpQdp~L-F~gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~ 1210 (1303)
|+||++.+ +..|++||+.++.. ..+.++..+ .+.++++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 46799999986532 122222111 112233332 444444555568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1211 APILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|+||||||||++||+.+.+.+.+.|++..+ .++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999998753 36899999999998888999999999999999999999875
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=379.04 Aligned_cols=215 Identities=28% Similarity=0.490 Sum_probs=186.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC-HHHhhcce
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN-LRWLRNHL 1132 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~-~~~lR~~i 1132 (1303)
|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7899999999643 24999999999999999999999999999999999999999999999999998775 46788899
Q ss_pred EEEccCCc--cCcccHHHHHHcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1133 GLVQQEPI--IFSTTIRENIIYARHN--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1133 ~~VpQdp~--LF~gTIreNl~~g~~~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
+||||+|. +++.|++|||.++... .+ ++++.++++..++.++... ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 5678999999875321 22 2345566666666555433 2348999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|||+.+|+||||||||++||+.+...+.+.|+++..+++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999999875557999999999999999999999999999999999998654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=366.59 Aligned_cols=204 Identities=23% Similarity=0.400 Sum_probs=179.6
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999964 2599999999999999999999999999999999999999999999999988764 56788999
Q ss_pred EEccCCccCc-ccHHHHHHcCCC--CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcC
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARH--NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~ 1210 (1303)
||||++.+|+ .|++||+.++.. ..+++++.++++..++.+...+. ...||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 9999998884 799999976531 23466788888888887665432 347999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1211 APILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
|++|||||||++||+.+.+.+.+.|++..+.++|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999987555689999999999885 59999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=393.33 Aligned_cols=213 Identities=26% Similarity=0.448 Sum_probs=185.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|++. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~~---~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGDV---VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCCe---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 48999999999642 499999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEccCCccCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+||+|++.+|+. |++||+.++.. ..+ ++++.++++..++.++..+.| .+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999987642 122 234667777777765554443 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
||+++|++||||||||+||+.+.+.+.+.|++..++ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999887543 689999999998764 6999999999999999999999875
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=375.26 Aligned_cols=217 Identities=28% Similarity=0.488 Sum_probs=184.0
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999752 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||+|.+|+ .|++||+.++.. ..+ ++++.++++..++.+ +........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 699999986521 112 123344444444321 012334456899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
++++|++|||||||++||+.+.+.+.+.|++..++ ++|+|++||+++.+ ..||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999987543 68999999999975 56999999999999999999999765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=372.22 Aligned_cols=217 Identities=26% Similarity=0.426 Sum_probs=181.4
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh-hcce
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL-RNHL 1132 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 1132 (1303)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCCE---EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 5789999999643 49999999999999999999999999999999999999999999999999988776554 5789
Q ss_pred EEEccCCccCcc-cHHHHHHcCCCC--CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhc
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARHN--ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~~--~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr 1209 (1303)
+|+||++.+|++ |++||+.++.+. ...++..+ .+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999865321 12221111 112333333 44444445556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhh
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
+|++|||||||++||+++.+.+.+.|++....++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999998755568999999999765 5599999999999999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=384.90 Aligned_cols=215 Identities=27% Similarity=0.469 Sum_probs=184.8
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcc
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 36999999999964 35999999999999999999999999999999999999999999999999997754 457899
Q ss_pred eEEEccCCccCc-ccHHHHHHcCCC--CCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1132 LGLVQQEPIIFS-TTIRENIIYARH--NASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1132 i~~VpQdp~LF~-gTIreNl~~g~~--~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
|+||||+|.+|. .|++||+.+... ..+.. .+.++++.+++ ++..++.++ +||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~----~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKVG----ELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCchh----hCCHHHHHHHHHH
Confidence 999999999986 699999985321 12322 23344444443 334555554 7999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|||+.+|++|+|||||++||+.+.+.+++.|+++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999876557999999999998864 999999999999999999999765
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=393.19 Aligned_cols=202 Identities=29% Similarity=0.442 Sum_probs=177.9
Q ss_pred CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHH----hcceEEEeccccccc
Q 000751 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL----RSQIGLVTQEPALLS 398 (1303)
Q Consensus 323 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~ 398 (1303)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ |++|+||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 4569999999999999999999999999999999999999999999999999999988887 789999999999996
Q ss_pred -HhHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEE
Q 000751 399 -LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLL 470 (1303)
Q Consensus 399 -~ti~~ni~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ilil 470 (1303)
.||+|||.++.. .+. +++.++++.+++..++ .....+||||||||++|||||+++|+||||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 699999998741 222 3455556666554444 444558999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccc-cccCEEEEEeCceEeeccChHHHhhcC
Q 000751 471 DEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 471 De~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
|||||+||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|++++.|++++++.+.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999999999999998774 389999999999986 559999999999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=381.47 Aligned_cols=211 Identities=30% Similarity=0.522 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
-|+++|++|+|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..+++++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999962 34699999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEeccc--ccccHhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 388 GLVTQEP--ALLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 388 ~~v~Q~~--~l~~~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
+||+|+| .++..|++||+.|+. ..+. +++.++++..++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 578899999999873 2222 34566666667665554443 47999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998874 4899999999999985 6999999999999999998654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=378.29 Aligned_cols=222 Identities=27% Similarity=0.430 Sum_probs=192.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECCE---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 58999999999742 599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCccCcc-cHHHHHHcCCC----------CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARH----------NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~----------~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
+|+||++.+|.+ |++||+.++.. ...++++.++++.+++.+++...| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 999999877665 99999987531 012345777888888766554443 37999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
+||||++.+|+||||||||++||+.+.+.+.+.|.+..+. ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 9999999999999999999999999999999999987543 689999999999885 69999999999999999999987
Q ss_pred hcCchhHHHH
Q 000751 1280 AKNGLYVRLM 1289 (1303)
Q Consensus 1280 ~~~g~y~~l~ 1289 (1303)
+. .....++
T Consensus 237 ~~-~~~~~~~ 245 (265)
T PRK10575 237 RG-ETLEQIY 245 (265)
T ss_pred CH-HHHHHHh
Confidence 54 2334444
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=380.68 Aligned_cols=217 Identities=29% Similarity=0.491 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCC--HHHHh
Q 000751 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--LEWLR 384 (1303)
Q Consensus 309 i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--~~~~~ 384 (1303)
|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999998753 45678
Q ss_pred cceEEEeccc--ccccHhHHHHHhcCC---CCCHHH----HHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 385 SQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 385 ~~i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
++||||+|+| .+|+.|++|||.++. ..+.++ +.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 578899999999864 234433 34444444442 11334556678999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988753 799999999999875 69999999999999999999886
Q ss_pred hc
Q 000751 533 AT 534 (1303)
Q Consensus 533 ~~ 534 (1303)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 54
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=376.11 Aligned_cols=223 Identities=26% Similarity=0.467 Sum_probs=192.3
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999964 35999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCccCcc-cHHHHHHcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYARHN----------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~~----------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
|+||++.+|++ |++||+.++... ..++++.++++..++.+.... ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999998876 999999875310 113346667777776554433 23589999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
||||++++|++|||||||++||+++.+.+.+.|++...+++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 999999999999999999999999999999999987544689999999999875 6999999999999999999998753
Q ss_pred CchhHHHHhh
Q 000751 1282 NGLYVRLMQP 1291 (1303)
Q Consensus 1282 ~g~y~~l~~~ 1291 (1303)
..+.+.+..
T Consensus 229 -~~~~~~~~~ 237 (255)
T PRK11231 229 -GLLRTVFDV 237 (255)
T ss_pred -HHHHHHhCC
Confidence 345555543
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=377.79 Aligned_cols=224 Identities=20% Similarity=0.360 Sum_probs=187.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHH---Hhh
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR---WLR 1129 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR 1129 (1303)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999964 3599999999999999999999999999999999999999999999999999877653 457
Q ss_pred cceEEEccCCccCcc-cHHHHHHcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1130 NHLGLVQQEPIIFST-TIRENIIYARH---NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~g-TIreNl~~g~~---~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
++++|+||++.+|++ |++||+.++.. ..+. +.+.++++..++.+... ....+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 889999999999986 99999976421 1122 23444555555543322 23348999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
+||||++++|++|||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999987543 6899999999988755 9999999999999999999998
Q ss_pred hcC-chhHHHHh
Q 000751 1280 AKN-GLYVRLMQ 1290 (1303)
Q Consensus 1280 ~~~-g~y~~l~~ 1290 (1303)
++. ..+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 753 34455544
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=392.05 Aligned_cols=212 Identities=25% Similarity=0.393 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999887654 6789
Q ss_pred EEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
+||+|++.+|. .||+|||.|+. ..+. +++.++++..++.+ .......+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-----------SERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------hhhCChhhCCHHHHHHHHHHH
Confidence 99999999995 79999999874 2222 33444555554443 344555689999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhcC
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
||+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..+.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999988753 799999999999875 59999999999999999999998764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=364.05 Aligned_cols=200 Identities=32% Similarity=0.468 Sum_probs=182.6
Q ss_pred EEEEEEEEEcCCCCC--CCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcc
Q 000751 309 IEFRNVYFSYLSRPE--IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 386 (1303)
|+++||+++|++..+ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999964211 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCC
Q 000751 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (1303)
Q Consensus 387 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ 466 (1303)
|+||+|+|.+|+.|++||+.++...+++++.++++.+++.+++..+|.|++|.+++.+..||||||||++||||++.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999986666677888888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHH-HHHHh-cCCCeEEEEecCCccccccCEEEEEeCce
Q 000751 467 ILLLDEVTGGLDFEAERAVQE-ALDLL-MLGRSTIIIARRLSLIRNADYIAVMDEGR 521 (1303)
Q Consensus 467 ililDe~ts~lD~~~~~~i~~-~l~~~-~~~~t~i~ith~~~~~~~~d~i~~l~~G~ 521 (1303)
++||||||++||+++.+.+.+ .++.. .+++|+|++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999888877 45555 34799999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=369.93 Aligned_cols=205 Identities=31% Similarity=0.457 Sum_probs=173.4
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH----h
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW----L 1128 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~----l 1128 (1303)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 135999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcceEEEccCCccCcc-cHHHHHHcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1129 RNHLGLVQQEPIIFST-TIRENIIYARHN--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1129 R~~i~~VpQdp~LF~g-TIreNl~~g~~~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
|++++|+||+|.+|.+ |++||+.++... .. ++++.++++..++.+.. .....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRL-----------NHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhh-----------hcChhhcCHHHHHHH
Confidence 6789999999999986 999999875321 11 23455555555554433 333458999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhhcCEEEEEeCCEE
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRHVDNIVVLNGGRI 1269 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~~D~Iivl~~G~I 1269 (1303)
+|||||+++|+||||||||++||+.+.+.+.+.|++..+ .++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998755 36899999999998889999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=384.73 Aligned_cols=225 Identities=26% Similarity=0.350 Sum_probs=187.0
Q ss_pred cEEEEeeEEECCCCC----------CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCC
Q 000751 1053 SIELKNVDFCYPSRP----------EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL 1122 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~----------~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~ 1122 (1303)
-|+++|++++|+.+. ...+++||||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHH---HhhcceEEEccCC--ccCc-ccHHHHHHcCC----CCCCHHH----HHHHHHHhchHHHHHhCCCCcccccCC
Q 000751 1123 YNLR---WLRNHLGLVQQEP--IIFS-TTIRENIIYAR----HNASEAE----VKEAARIANAHHFISSLPHGYDTHVGM 1188 (1303)
Q Consensus 1123 ~~~~---~lR~~i~~VpQdp--~LF~-gTIreNl~~g~----~~~~~~e----i~~al~~a~l~~~I~~lp~Gldt~vge 1188 (1303)
++.+ .+|++|+||+|+| .+|+ .||.|||.++. +..+.++ +.++++.+++.+. ....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------HhcC
Confidence 8754 4678999999999 4774 79999996531 1234333 3445555555211 1223
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeC
Q 000751 1189 RGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNG 1266 (1303)
Q Consensus 1189 ~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~ 1266 (1303)
...+||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.++ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 34589999999999999999999999999999999999999999999987543 6899999999999875 999999999
Q ss_pred CEEEEecChHHHhhcC-chhHH
Q 000751 1267 GRIVEEGTHDSLLAKN-GLYVR 1287 (1303)
Q Consensus 1267 G~Ive~Gt~~eLl~~~-g~y~~ 1287 (1303)
|+|+|.|++++++++. ..|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998763 34554
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=375.73 Aligned_cols=214 Identities=29% Similarity=0.453 Sum_probs=184.1
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC---------
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN--------- 1124 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--------- 1124 (1303)
|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGIL---TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCCe---eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 5799999999743 5999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHhhcceEEEccCCccCc-ccHHHHHHcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCC
Q 000751 1125 ----LRWLRNHLGLVQQEPIIFS-TTIRENIIYARH---NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVD 1192 (1303)
Q Consensus 1125 ----~~~lR~~i~~VpQdp~LF~-gTIreNl~~g~~---~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~ 1192 (1303)
...+|++++||+|++.+|+ .|++||+.++.. ... ++++.++++..++.++..+ ....
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhh
Confidence 2467889999999999885 799999987421 112 2345566666666554443 3458
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEE
Q 000751 1193 LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIV 1270 (1303)
Q Consensus 1193 LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Iv 1270 (1303)
||||||||++||||++++|++|||||||++||+.+...+.+.|++..++ ++|+|+|||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987543 689999999999885 59999999999999
Q ss_pred EecChHHHhhc
Q 000751 1271 EEGTHDSLLAK 1281 (1303)
Q Consensus 1271 e~Gt~~eLl~~ 1281 (1303)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999865
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.04 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=191.7
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCc---cEEEECCeeCCCCCHHHh
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA---GQVLLDGRDLKLYNLRWL 1128 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~---G~I~idG~di~~~~~~~l 1128 (1303)
+.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~~-~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCCC-ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 3589999999997432 359999999999999999999999999999999999999987 899999999988888888
Q ss_pred hcceEEEccCC--ccCcccHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1129 RNHLGLVQQEP--IIFSTTIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1129 R~~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
|++++||||+| .+++.|++|||.++.. ..+. +++.++++.+++.++....| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 99999999998 4668899999987532 2233 34677788888877665554 4899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHh
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
++|||||+++|++|||||||++||+.+...+.+.|++...+ ++|||++||+++.+..||+|++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987543 68999999999999899999999999999999999886
Q ss_pred hc
Q 000751 1280 AK 1281 (1303)
Q Consensus 1280 ~~ 1281 (1303)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 53
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=389.83 Aligned_cols=215 Identities=31% Similarity=0.486 Sum_probs=184.1
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH---Hh
Q 000751 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (1303)
Q Consensus 309 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~~ 384 (1303)
|+++|++|+|++.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 357999999999999999999999999999999999999999999999999998877654 47
Q ss_pred cceEEEeccccccc-HhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
++|+||+|++.+|. .|++||+.++. ..+.+ ++.+.++..++ +........+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGL-----------SDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHH
Confidence 89999999999885 79999999763 22332 23334444443 33334455689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988753 7999999999999865 99999999999999999999976
Q ss_pred c
Q 000751 534 T 534 (1303)
Q Consensus 534 ~ 534 (1303)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=372.19 Aligned_cols=214 Identities=28% Similarity=0.471 Sum_probs=182.8
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC--CHHHhhcc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY--NLRWLRNH 1131 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~--~~~~lR~~ 1131 (1303)
|+++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~~---~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGPT---QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 6899999999642 599999999999999999999999999999999999999999999999999864 34577889
Q ss_pred eEEEccCCccCc-ccHHHHHHcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1132 LGLVQQEPIIFS-TTIRENIIYARH---NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1132 i~~VpQdp~LF~-gTIreNl~~g~~---~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
++|+||++.+|. .|++||+.++.. ..+. +++.++++..++.+. .......||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAER-----------AHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHH-----------HhcChhhcCHHHHHHHHH
Confidence 999999999886 599999987531 1122 233444554444333 333445899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|||++++|++|||||||++||+++...+.+.|++..++++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999999987555699999999999885 5999999999999999999998764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=377.43 Aligned_cols=220 Identities=27% Similarity=0.435 Sum_probs=188.8
Q ss_pred cccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--C
Q 000751 1051 YGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKL--Y 1123 (1303)
Q Consensus 1051 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~ 1123 (1303)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|++||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999964 2599999999999999999999999999999999999975 89999999999875 3
Q ss_pred CHHHhhcceEEEccCCccCcccHHHHHHcCCC--CC--C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCCh
Q 000751 1124 NLRWLRNHLGLVQQEPIIFSTTIRENIIYARH--NA--S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1124 ~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~--~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
+...+|++++||||+|.+|+.|++||+.++.. .. + ++++.++++.+++.+++. ........+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 56678899999999999999999999986521 11 1 234567777777754432 122344568999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecC
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt 1274 (1303)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++... ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999998755 589999999999884 589999999999999999
Q ss_pred hHHHhhc
Q 000751 1275 HDSLLAK 1281 (1303)
Q Consensus 1275 ~~eLl~~ 1281 (1303)
++++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14235 246 TEKMFTN 252 (267)
T ss_pred HHHHHhC
Confidence 9999854
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=380.72 Aligned_cols=221 Identities=29% Similarity=0.481 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCC----CHH
Q 000751 308 NIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLE 381 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~ 381 (1303)
.|+++|++|+|++.. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 24699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEeccc--ccccHhHHHHHhcCC---CCCHHHHHHHHHHhcchHHHHhcccccCc-cccCCCCCCChHHHHHH
Q 000751 382 WLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYET-QVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~vg~~g~~LSgGqkqri 455 (1303)
.+|++||||+|+| .+|..|+.|||.++. ..+.++..+.+ .+.++.+ |+++ .....+.+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYA-----HRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6888999999997 688899999999874 23443333221 2233333 5653 34566789999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
+|||||+.+|+||||||||++||+.+...+.+.++++. .|+|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998874 4899999999999875 69999999999999999999887
Q ss_pred hcC
Q 000751 533 ATG 535 (1303)
Q Consensus 533 ~~~ 535 (1303)
+..
T Consensus 235 ~~~ 237 (286)
T PRK13646 235 KDK 237 (286)
T ss_pred hCH
Confidence 643
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=375.27 Aligned_cols=219 Identities=28% Similarity=0.400 Sum_probs=185.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCC--CCCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLK--LYNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~--~~~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGSN---HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCCe---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 48999999999643 499999999999999999999999999999999999987 4999999999997 4556
Q ss_pred HHhhcceEEEccCCccCcc-cHHHHHHcCCC--C--CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChH
Q 000751 1126 RWLRNHLGLVQQEPIIFST-TIRENIIYARH--N--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~g-TIreNl~~g~~--~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1196 (1303)
..+|++++|+||+|.+|++ |++||+.++.. . .+ ++++.++++..++.+.+. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999975 99999986421 1 01 234556666666543322 1223445689999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecCh
Q 000751 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1197 QrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
||||++||||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999998755 599999999999875 5999999999999999999
Q ss_pred HHHhhcC
Q 000751 1276 DSLLAKN 1282 (1303)
Q Consensus 1276 ~eLl~~~ 1282 (1303)
+++.+..
T Consensus 233 ~~~~~~~ 239 (253)
T PRK14267 233 RKVFENP 239 (253)
T ss_pred HHHHhCC
Confidence 9998653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=371.50 Aligned_cols=214 Identities=30% Similarity=0.472 Sum_probs=181.4
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC--------H
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN--------L 1125 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--------~ 1125 (1303)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHGQ---TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 8999999999743 4999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHhhcceEEEccCCccCc-ccHHHHHHcCC---CCCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1126 RWLRNHLGLVQQEPIIFS-TTIRENIIYAR---HNASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~-gTIreNl~~g~---~~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
..+|++++||||+|.+|+ .|++||+.++. .....+ .+.++++..+ ++........+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVG-----------LAGKETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CcchhhCChhhCChHH
Confidence 567889999999999886 69999997642 111222 2333343333 3333334556899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChH
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHD 1276 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~ 1276 (1303)
|||++||||++.+|+||||||||++||+.+.+.+.+.|++....++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999987554689999999999885 49999999999999999999
Q ss_pred HHhhc
Q 000751 1277 SLLAK 1281 (1303)
Q Consensus 1277 eLl~~ 1281 (1303)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98764
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=380.87 Aligned_cols=216 Identities=23% Similarity=0.433 Sum_probs=183.3
Q ss_pred EEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCC----CCHHH
Q 000751 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----LKLEW 382 (1303)
Q Consensus 309 i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~ 382 (1303)
|+++||+|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996321 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEeccc--ccccHhHHHHHhcCC-C--CCHHH----HHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 383 LRSQIGLVTQEP--ALLSLSIRDNIAYGR-D--ATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 383 ~~~~i~~v~Q~~--~l~~~ti~~ni~~~~-~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
+|+.|+||+|+| .+|..|+.||+.|+. . .+.++ +.++++..++.+ .........|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHHH
Confidence 889999999998 789999999999874 2 23332 334444444421 1234556789999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
|++|||||+.+|+||||||||++||+.+.+.+.+.++++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998775 4899999999999885 5999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
..+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=370.47 Aligned_cols=215 Identities=31% Similarity=0.479 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.++++|++|+|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999888777888999
Q ss_pred EEEecccccccHhHHHHHhcCCC---CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC
Q 000751 388 GLVTQEPALLSLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (1303)
Q Consensus 388 ~~v~Q~~~l~~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~ 464 (1303)
+|++|++.+|..|++||+.++.. ...+++.+.++..++.+ .........||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997642 12334445555554421 122345668999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhcC
Q 000751 465 PSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 465 ~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+. .||+|++|++|++++.|+++++....
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 99999999999999999999999998875 3899999999999876 49999999999999999999987643
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=377.42 Aligned_cols=215 Identities=27% Similarity=0.433 Sum_probs=183.4
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCC--CCCHHHhhcc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLK--LYNLRWLRNH 1131 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~--~~~~~~lR~~ 1131 (1303)
|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQDE---PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCCc---ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 7899999999642 4999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred eEEEccCCc--cCcccHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1132 LGLVQQEPI--IFSTTIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1132 i~~VpQdp~--LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
++||||+|. +|..|+.+|+.++.. ..+. +++.++++..++.++.. + ...+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-------Q----PIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-------C----CchhCCHHHHHHHHH
Confidence 999999985 677899999986421 1222 23455666666654432 2 234899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
||||+.+|+||||||||++||+.+...+.+.|++....++|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99999999999999999999999999999999987544689999999999885 59999999999999999999987653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=365.56 Aligned_cols=203 Identities=26% Similarity=0.455 Sum_probs=177.5
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|+++ ++|+|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 5799999999643 5999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEccCCccCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++.++.+ +.+ .+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hhCCHHHHHHHHHHHH
Confidence 99999999986 99999976321 111 345677777777765543 222 4799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
++++|++|||||||++||+.+.+.+.+.|++... ++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998765 499999999999886 59999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=376.10 Aligned_cols=218 Identities=28% Similarity=0.445 Sum_probs=188.0
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~~-~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSDA-SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 489999999997532 3589999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCc--cCcccHHHHHHcCCCC--CCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1133 GLVQQEPI--IFSTTIRENIIYARHN--ASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1133 ~~VpQdp~--LF~gTIreNl~~g~~~--~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
+||||+|. ++..|+++|+.++... .+. +++.++++..++.++.. ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999994 4456899999875321 122 34555666666544432 23458999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
||++++|++|||||||++||+.+.+.+.+.|++..++ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999999987543 68999999999988889999999999999999999987653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=374.70 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=184.8
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC--------
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY-------- 1123 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~-------- 1123 (1303)
+.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+
T Consensus 4 ~~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 569999999999743 599999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHhhcceEEEccCCccCcc-cHHHHHHcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCC
Q 000751 1124 -----NLRWLRNHLGLVQQEPIIFST-TIRENIIYARH---NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRG 1190 (1303)
Q Consensus 1124 -----~~~~lR~~i~~VpQdp~LF~g-TIreNl~~g~~---~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G 1190 (1303)
....+|++++||||+|.+|+. |++||+.++.. ... ++++.++++..++.+.. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 135678899999999999974 99999976321 112 23345555555554332 13345
Q ss_pred CCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEE
Q 000751 1191 VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRI 1269 (1303)
Q Consensus 1191 ~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~I 1269 (1303)
..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+.++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999999875557999999999999875 999999999999
Q ss_pred EEecChHHHhhc
Q 000751 1270 VEEGTHDSLLAK 1281 (1303)
Q Consensus 1270 ve~Gt~~eLl~~ 1281 (1303)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999999865
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=371.72 Aligned_cols=215 Identities=25% Similarity=0.443 Sum_probs=181.3
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCC------CCCHH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLK------LYNLR 1126 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~------~~~~~ 1126 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECCe---eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 37899999999643 4999999999999999999999999999999999999999999999999873 22346
Q ss_pred HhhcceEEEccCCccCcc-cHHHHHHcCC---CCCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1127 WLRNHLGLVQQEPIIFST-TIRENIIYAR---HNASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp~LF~g-TIreNl~~g~---~~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
.+|++++|+||+|.+|++ |++||+.++. ..... +++.++++..++.+++. ....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHH
Confidence 778899999999999975 9999997421 01122 23444455555544433 33458999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+||||||||++||+++...+.+.|++....++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999987554699999999999885 599999999999999999998
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.+.
T Consensus 228 ~~~~ 231 (242)
T PRK11124 228 FTQP 231 (242)
T ss_pred hcCc
Confidence 7654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=367.15 Aligned_cols=206 Identities=26% Similarity=0.462 Sum_probs=173.9
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH---hh
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW---LR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---lR 1129 (1303)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 135999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1130 -NHLGLVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1130 -~~i~~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
++++||||+|.+|+ .|++||+.++.. ..+ .+++.++++..++.+.. ......||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRI-----------NHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHH
Confidence 68999999999996 599999986421 112 22345555555554333 333458999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhhcCEEEEEeCCEEE
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRHVDNIVVLNGGRIV 1270 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~~D~Iivl~~G~Iv 1270 (1303)
+||||++++|+||||||||++||+.+...+.+.|++..+ .++|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999998754 268999999999999999999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=366.03 Aligned_cols=204 Identities=26% Similarity=0.504 Sum_probs=175.4
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 5799999999743 499999999999999999999999999999999999999999999999999766543 56899
Q ss_pred EEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||++.+|+ .|++||+.++.. ..+ ++++.++++..++.++....| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999985 699999987521 112 234556667777665544433 4799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhh-cCEEEEEeCCEEEEec
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~G 1273 (1303)
++++|++|||||||++||+.+.+.+.+.|++..+ .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998754 26899999999998765 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=367.74 Aligned_cols=215 Identities=25% Similarity=0.399 Sum_probs=181.5
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH-hhcc
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW-LRNH 1131 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 1131 (1303)
.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|+.
T Consensus 5 ~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGKI---QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCCc---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 48999999999643 5999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEccCCccCcc-cHHHHHHcCCCCCCHHH----HHHHHHHh-chHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1132 LGLVQQEPIIFST-TIRENIIYARHNASEAE----VKEAARIA-NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1132 i~~VpQdp~LF~g-TIreNl~~g~~~~~~~e----i~~al~~a-~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
++|+||++.+|++ |++||+.++....+.++ +.++++.. ++.+ ........||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHHH
Confidence 9999999999985 99999987542222222 22223222 1211 112234589999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|++++|+||||||||++||+.+.+.+.+.|++..++++|+|++||+++.+ ..||+|++|++|++++.|+++++.+.
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998755579999999999865 56999999999999999999999753
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=373.44 Aligned_cols=220 Identities=29% Similarity=0.465 Sum_probs=183.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHH-hcce
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 387 (1303)
++++|++|+|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..|
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 46899999995 3469999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEecccccccH-hHHHHHhcCCC-CCHHHH-------HHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 388 GLVTQEPALLSL-SIRDNIAYGRD-ATLDQI-------EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 388 ~~v~Q~~~l~~~-ti~~ni~~~~~-~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
+||+|++.+|.. |++||+.++.. .....+ ........+++.++.+ |++.........||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999875 99999987641 100000 0000111223444444 566566677789999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhh
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999998875 68999999999999865 99999999999999999988754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=379.77 Aligned_cols=216 Identities=28% Similarity=0.463 Sum_probs=183.5
Q ss_pred EEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCC----CCHHH
Q 000751 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----LKLEW 382 (1303)
Q Consensus 309 i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~ 382 (1303)
++++|++|+|++.. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996321 1469999999999999999999999999999999999999999999999999863 34566
Q ss_pred HhcceEEEeccc--ccccHhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 383 LRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 383 ~~~~i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
.|+.|+||+|+| .+|+.||+|||.|+. ..+.+ ++.++++.+++++. ........|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHHH
Confidence 788999999998 688899999999873 23333 33444445544321 123456689999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHH
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDE 530 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 530 (1303)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. .|.|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998875 3899999999999875 599999999999999999998
Q ss_pred Hhhc
Q 000751 531 LLAT 534 (1303)
Q Consensus 531 l~~~ 534 (1303)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=378.23 Aligned_cols=218 Identities=27% Similarity=0.462 Sum_probs=183.0
Q ss_pred cEEEEeeEEECCCCC--CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----CHH
Q 000751 1053 SIELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY----NLR 1126 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~ 1126 (1303)
.|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 13599999999999999999999999999999999999999999999999998653 346
Q ss_pred HhhcceEEEccCC--ccCcccHHHHHHcCCC--CCCHH----HHHHHHHHhchH-HHHHhCCCCcccccCCCCCCCChHH
Q 000751 1127 WLRNHLGLVQQEP--IIFSTTIRENIIYARH--NASEA----EVKEAARIANAH-HFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~~----ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
..|+.++|+||+| .+|+.|++|||.++.. ..+.+ .+.++++.+++. ++ .......|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL-----------ISKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-----------hhCCcccCCHHH
Confidence 6788999999998 5888899999986431 12222 234444444442 22 233455899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChH
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHD 1276 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~ 1276 (1303)
|||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+.+.|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999987555689999999999874 69999999999999999999
Q ss_pred HHhhc
Q 000751 1277 SLLAK 1281 (1303)
Q Consensus 1277 eLl~~ 1281 (1303)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=374.56 Aligned_cols=217 Identities=28% Similarity=0.420 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 599999999995 34699999999999999999999999999999999999997 48999999998853 345
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCC----CC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~----~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+|+.|+||+|++.+|..|++|||.++.. .+ ++++.++++.+++.+.+ ++.++ ....+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLN----TNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHh----CCcccCCHHHH
Confidence 567889999999999999999999998641 12 23455556666554332 22333 35678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877899999999999875 5999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 754
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=374.81 Aligned_cols=217 Identities=29% Similarity=0.487 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 599999999995 3469999999999999999999999999999999999975 689999999999864 345
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CC-----CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+|+.|+||+|++.+|..|++||+.++. .. .++++.++++.+++.+++. +.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 67788999999999999899999998752 11 1234556666666654332 234556778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999885 5999999999999999999988
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=378.87 Aligned_cols=221 Identities=26% Similarity=0.461 Sum_probs=182.6
Q ss_pred cccEEEEeeEEECCCCC--CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCC----C-
Q 000751 1051 YGSIELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL----Y- 1123 (1303)
Q Consensus 1051 ~g~I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~----~- 1123 (1303)
.+.|+++|++++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999997542 1259999999999999999999999999999999999999999999999999853 2
Q ss_pred CHHHhhcceEEEccCC--ccCcccHHHHHHcCCC--CCCHHHH----HHHHHHhchHHHHHhCCCCcccccCCCCCCCCh
Q 000751 1124 NLRWLRNHLGLVQQEP--IIFSTTIRENIIYARH--NASEAEV----KEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1124 ~~~~lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
+...+|++++||||+| .+|+.|++||+.++.. ....++. .++++..++ |.+ ........|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~---~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PED---YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Chh---HhcCChhhCCH
Confidence 4567888999999998 4788899999987532 1233332 223333322 222 12344568999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEec
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~G 1273 (1303)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+ ..||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999987542 68999999999976 469999999999999999
Q ss_pred ChHHHhhc
Q 000751 1274 THDSLLAK 1281 (1303)
Q Consensus 1274 t~~eLl~~ 1281 (1303)
+++++.+.
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99988654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=366.38 Aligned_cols=206 Identities=31% Similarity=0.464 Sum_probs=176.0
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
|+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997421 1369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCccCc-ccHHHHHHcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFS-TTIRENIIYARH--NA----SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~-gTIreNl~~g~~--~~----~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+||||+|.+|+ .|++||+.++.. .. .++++.++++..++.++..+.| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999997 699999986521 11 1345666777777765554443 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEe--CCEEEEecCh
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLN--GGRIVEEGTH 1275 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~--~G~Ive~Gt~ 1275 (1303)
||+++|++|||||||++||+.+.+.+.+.|++..+ .++|+|+|||+++.+. .||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999999999999998643 3689999999999764 599999999 7999998864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=373.39 Aligned_cols=225 Identities=28% Similarity=0.395 Sum_probs=184.9
Q ss_pred cEEEEeeEEECCCC------CCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHH
Q 000751 1053 SIELKNVDFCYPSR------PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR 1126 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~ 1126 (1303)
.|+++||+++|++. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 124699999999999999999999999999999999999999999999999999887654
Q ss_pred ---HhhcceEEEccCCc--cC-cccHHHHHHcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCC
Q 000751 1127 ---WLRNHLGLVQQEPI--IF-STTIRENIIYARH---NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDL 1193 (1303)
Q Consensus 1127 ---~lR~~i~~VpQdp~--LF-~gTIreNl~~g~~---~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~L 1193 (1303)
.+|++++||||+|. ++ ..|++||+.++.. ... ++++.++++..++.+ .........|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 36788999999983 44 3699999964321 111 223444454444421 1223455689
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEE
Q 000751 1194 TPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVE 1271 (1303)
Q Consensus 1194 SgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive 1271 (1303)
|||||||++||||++++|+||||||||++||+.+.+.+.+.|++..+. ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999987543 689999999999886 599999999999999
Q ss_pred ecChHHHhhcCchhHH
Q 000751 1272 EGTHDSLLAKNGLYVR 1287 (1303)
Q Consensus 1272 ~Gt~~eLl~~~g~y~~ 1287 (1303)
.|++++++.....|.+
T Consensus 232 ~g~~~~~~~~~~~~~~ 247 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGR 247 (265)
T ss_pred ECCHHHHcCCCCHHHH
Confidence 9999999875443443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=389.01 Aligned_cols=212 Identities=27% Similarity=0.466 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.++++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++.|
T Consensus 14 ~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 589999999995 34699999999999999999999999999999999999999999999999999877654 4789
Q ss_pred EEEeccccccc-HhHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
+||+|++.+|. .||+|||.|+.. .+. +++.++++..++.++..+.| .+||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 699999998742 222 34566677777766665555 479999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhcC
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|++++++.+.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988753 899999999999864 69999999999999999999998764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=367.28 Aligned_cols=213 Identities=27% Similarity=0.416 Sum_probs=180.0
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH-hhcce
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW-LRNHL 1132 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~i 1132 (1303)
|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQS---HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCCe---EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 5799999999743 5999999999999999999999999999999999999999999999999998887654 46789
Q ss_pred EEEccCCccCcc-cHHHHHHcCCCCC--CHH-HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHh
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARHNA--SEA-EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~~~--~~~-ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAll 1208 (1303)
+|+||++.+|+. |++||+.++.... ..+ ...++++..+ +++........+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998753221 112 2233333332 1222233445589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHh
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1209 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
++|++|||||||++||+.+.+.+.+.|.+..++ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999999987542 6899999999998875 9999999999999999999973
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=375.52 Aligned_cols=218 Identities=26% Similarity=0.449 Sum_probs=183.0
Q ss_pred EEEEeeEEECCCCC--CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----CHHH
Q 000751 1054 IELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY----NLRW 1127 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~ 1127 (1303)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 13599999999999999999999999999999999999999999999999998764 3567
Q ss_pred hhcceEEEccCC--ccCcccHHHHHHcCCC--CCCHHHH----HHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1128 LRNHLGLVQQEP--IIFSTTIRENIIYARH--NASEAEV----KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1128 lR~~i~~VpQdp--~LF~gTIreNl~~g~~--~~~~~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
+|++|+|+||+| .+|+.|++||+.++.. ..+.++. .++++..++.+ ........+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 889999999998 6888999999986521 1233332 33334433321 1223445689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+.++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987554689999999999875 5999999999999999999998
Q ss_pred hhc
Q 000751 1279 LAK 1281 (1303)
Q Consensus 1279 l~~ 1281 (1303)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=376.47 Aligned_cols=216 Identities=28% Similarity=0.465 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.++++||+|+|++ ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 4899999999953 234699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEeccc--ccccHhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 388 GLVTQEP--ALLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 388 ~~v~Q~~--~l~~~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
+||+|++ .+++.|++|||.++. ..+. +++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 466789999999863 2232 34566666666666555444 47999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcC
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 999999999999999999999999999999988764 79999999999998889999999999999999999887653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=374.58 Aligned_cols=219 Identities=31% Similarity=0.530 Sum_probs=188.5
Q ss_pred CccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--C
Q 000751 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--L 378 (1303)
Q Consensus 306 ~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~ 378 (1303)
.+.|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeC---CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 34699999999995 3469999999999999999999999999999999999986 589999999999853 4
Q ss_pred CHHHHhcceEEEecccccccHhHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChH
Q 000751 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (1303)
Q Consensus 379 ~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgG 450 (1303)
+...+|++|+||+|++.+|..|++||+.++. ..+. +++.++++..++.+.+ .....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 5667889999999999999999999998763 1222 3455566666654333 23345667789999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChH
Q 000751 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 451 qkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~ 529 (1303)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877899999999999885 59999999999999999999
Q ss_pred HHhhc
Q 000751 530 ELLAT 534 (1303)
Q Consensus 530 ~l~~~ 534 (1303)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 88654
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=370.41 Aligned_cols=205 Identities=27% Similarity=0.380 Sum_probs=178.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~~---~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 49999999999643 4999999999999999999999999999999999999999999999998763 467899
Q ss_pred EEEccCCccCc-ccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 000751 1133 GLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA 1211 (1303)
Q Consensus 1133 ~~VpQdp~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p 1211 (1303)
+|++|+|.+|+ .|++||+.++.....++++.++++..++.+.... ...+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999997 6999999876432234567777777777654433 34589999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChH
Q 000751 1212 PILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHD 1276 (1303)
Q Consensus 1212 ~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~ 1276 (1303)
++|||||||++||+.+...+.+.|++..+ .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999988643 3689999999999874 59999999999999988764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=389.11 Aligned_cols=201 Identities=30% Similarity=0.487 Sum_probs=176.4
Q ss_pred ceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh----hcceEEEccCCccCc-c
Q 000751 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL----RNHLGLVQQEPIIFS-T 1144 (1303)
Q Consensus 1070 ~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l----R~~i~~VpQdp~LF~-g 1144 (1303)
++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+++...+ |++++||||++.+|+ .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999999999998887654 468999999999997 5
Q ss_pred cHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeC
Q 000751 1145 TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE 1218 (1303)
Q Consensus 1145 TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDE 1218 (1303)
|++||+.++.. ..+ ++++.++++.+++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987532 112 245667777777766655544 3799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1219 ASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1219 aTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|||+||+.+.+.+++.|.+..+ .++|+|+|||+++.+. .||+|++|++|+|++.|++++++.+
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999998743 3689999999999864 5999999999999999999999875
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=365.60 Aligned_cols=202 Identities=30% Similarity=0.512 Sum_probs=175.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHH---Hhhc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR---WLRN 1130 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~ 1130 (1303)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 7899999999532 3599999999999999999999999999999999999999999999999999887643 4788
Q ss_pred ceEEEccCCccCc-ccHHHHHHcCCC------CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1131 HLGLVQQEPIIFS-TTIRENIIYARH------NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~-gTIreNl~~g~~------~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
+++|+||+|.+|. .|++||+.++.. ...+++++++++..++.+...+.| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999996 699999987421 112346677788888766554443 3799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCE
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGR 1268 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~ 1268 (1303)
||||+++|++|||||||++||+.+...+.+.|++..++++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875556999999999998875 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=373.46 Aligned_cols=216 Identities=31% Similarity=0.496 Sum_probs=185.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCeecCCC--CHH
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKNL--KLE 381 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~~--~~~ 381 (1303)
|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEEC---CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 78999999995 346999999999999999999999999999999999999998 99999999998753 456
Q ss_pred HHhcceEEEecccccccHhHHHHHhcCC---C-CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 382 WLRSQIGLVTQEPALLSLSIRDNIAYGR---D-ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
..++.|+||+|++.+|..|++||+.++. . .+. +++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 6788999999999999999999998753 1 122 23445555555543221 2334556789999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHh
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877799999999999875 59999999999999999999886
Q ss_pred hc
Q 000751 533 AT 534 (1303)
Q Consensus 533 ~~ 534 (1303)
..
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 53
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=364.67 Aligned_cols=203 Identities=26% Similarity=0.489 Sum_probs=175.0
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH---HHhhc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL---RWLRN 1130 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR~ 1130 (1303)
|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999643 259999999999999999999999999999999999999999999999999987764 35788
Q ss_pred ceEEEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1131 HLGLVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
+++||||+|.+|+ .|++||+.++.. ..+ ++++.++++..++.+.....| .+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence 9999999999998 499999986531 112 234666777777765544333 3799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEE
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRI 1269 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~I 1269 (1303)
|||++++|+|+||||||++||+.+.+.+.+.|++..++++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875456999999999998875 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=368.25 Aligned_cols=202 Identities=27% Similarity=0.472 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHH---HHhc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLRS 385 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~~~ 385 (1303)
|+++|++++|++ ..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPG-GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecC-CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 689999999953 224699999999999999999999999999999999999999999999999998776543 4678
Q ss_pred ceEEEeccccccc-HhHHHHHhcCC---CC----CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 386 QIGLVTQEPALLS-LSIRDNIAYGR---DA----TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 386 ~i~~v~Q~~~l~~-~ti~~ni~~~~---~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
+|+|++|++.+|. .|++||+.++. .. .++++.++++..++.++..+. ..+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL-----------PMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 9999999999886 69999998752 11 234556666666665544333 34799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceE
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRL 522 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i 522 (1303)
||||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 4799999999999986 4999999999975
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=371.22 Aligned_cols=218 Identities=27% Similarity=0.408 Sum_probs=187.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCCHHH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKLYNLRW 1127 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~~~~~ 1127 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQV---EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 48999999999643 499999999999999999999999999999999999974 6999999999999888888
Q ss_pred hhcceEEEccCCccC-cccHHHHHHcCCC--C--CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1128 LRNHLGLVQQEPIIF-STTIRENIIYARH--N--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1128 lR~~i~~VpQdp~LF-~gTIreNl~~g~~--~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
+|++++|+||+|.+| +.|++||+.++.. . .+ ++++.++++.+++.+.+. ..+++. ..+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAP----AGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----cccCCHHHH
Confidence 999999999999765 5799999986531 0 11 235666777777644322 123333 458999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+||||||||++||+.+...+.+.|++... ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 999999999999999999999999999999999999998754 699999999999874 699999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 9865
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=363.12 Aligned_cols=211 Identities=27% Similarity=0.442 Sum_probs=188.4
Q ss_pred EEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH----HHhhc
Q 000751 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL----RWLRN 1130 (1303)
Q Consensus 1055 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~----~~lR~ 1130 (1303)
.+.|+.|+|+.+ .++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999754 359999999999999999999999999999999999999999999999998876543 34577
Q ss_pred ceEEEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcC
Q 000751 1131 HLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~ 1210 (1303)
.++|++|+|.+|+.|++||+.++.+ .++++..++++.+++.+++..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998653 356677888999999999999999999999988899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCE
Q 000751 1211 APILLLDEASSSIESESSRVVQE--ALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGR 1268 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~--~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~ 1268 (1303)
|+||||||||++||+.+...+.+ .++.....++|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 45444333689999999999999999999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=386.88 Aligned_cols=215 Identities=25% Similarity=0.464 Sum_probs=186.4
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcc
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++. .|++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999964 259999999999999999999999999999999999999999999999999987764 4789
Q ss_pred eEEEccCCccCcc-cHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1132 LGLVQQEPIIFST-TIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1132 i~~VpQdp~LF~g-TIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
++||+|++.+|+. |++|||.|+.. ..+. +++.++++..++.++.++.| .+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999975 99999998642 1222 34556667767665544443 37999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
|||+++|++||||||||+||..+...+.+.|++..++ +.|+|+|||+++.+ ..||+|++|++|++++.|+++++.++.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999999888776432 68999999999975 569999999999999999999998763
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=381.43 Aligned_cols=214 Identities=26% Similarity=0.444 Sum_probs=182.0
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGDK---VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCCe---EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 48999999999642 599999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEccCCccCc-ccHHHHHHcCCC--CCCHHH----HHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFS-TTIRENIIYARH--NASEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~-gTIreNl~~g~~--~~~~~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+||||++.+|+ .|++||+.+... ..+..+ +.++++..++ ++.+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-------hhHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 699999974211 123332 3334444443 23334444 479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
||+++|++|||||||++||+.+.+.+.+.|++...+++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999987555789999999999885 5999999999999999999999764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=374.02 Aligned_cols=219 Identities=26% Similarity=0.420 Sum_probs=188.3
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CC
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--YN 1124 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 1124 (1303)
..|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 36999999999964 359999999999999999999999999999999999997 579999999999864 34
Q ss_pred HHHhhcceEEEccCCccCcccHHHHHHcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARHN---AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~---~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
...+|+.++||||+|.+|+.|++||+.++... .+ ++++.++++.+++.+++. .........|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 66788999999999999999999999875321 11 234566677776654432 23445566899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChH
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHD 1276 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~ 1276 (1303)
|||++||||++++|++|||||||++||+.+...+.+.|++... +.|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999998854 589999999999874 59999999999999999999
Q ss_pred HHhhc
Q 000751 1277 SLLAK 1281 (1303)
Q Consensus 1277 eLl~~ 1281 (1303)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 99764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=387.01 Aligned_cols=212 Identities=26% Similarity=0.441 Sum_probs=183.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .++.|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 378999999995 3469999999999999999999999999999999999999999999999999987654 35789
Q ss_pred EEEeccccccc-HhHHHHHhcCCC-------CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGRD-------ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~~-------~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
+||+|++.+|. .|++||+.|+.. .+. +++.++++..++.++.. .....||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHH
Confidence 99999999996 699999998742 122 34455555555544433 34468999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
+|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988754 789999999999875 59999999999999999999997
Q ss_pred hcC
Q 000751 533 ATG 535 (1303)
Q Consensus 533 ~~~ 535 (1303)
.+.
T Consensus 226 ~~p 228 (353)
T PRK10851 226 REP 228 (353)
T ss_pred hCc
Confidence 753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=375.02 Aligned_cols=215 Identities=28% Similarity=0.508 Sum_probs=183.9
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCC--CCHHHhhcc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL--YNLRWLRNH 1131 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~--~~~~~lR~~ 1131 (1303)
|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 7899999999632 259999999999999999999999999999999999999999999999999852 334568899
Q ss_pred eEEEccCC--ccCcccHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1132 LGLVQQEP--IIFSTTIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1132 i~~VpQdp--~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
|+|+||+| .+|+.|++||+.++.. ..+. +++.++++.+++.++.. + ....||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~----~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-------K----PPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-------C----ChhhCCHHHHHHHHH
Confidence 99999998 5788999999986531 1222 34556666666644322 2 234799999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|||++++|++|||||||++||+.+...+.+.|+++.++++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999987554689999999999876 5999999999999999999998764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=370.68 Aligned_cols=215 Identities=27% Similarity=0.412 Sum_probs=187.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 37899999999743 499999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEccCCcc-CcccHHHHHHcCCCCC------CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPII-FSTTIRENIIYARHNA------SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~L-F~gTIreNl~~g~~~~------~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+|+||++.+ ++.|++||+.++.... .++.+.++++..++.+...+ ....||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 999999987 6789999998753211 12345667777776554333 23489999999999999
Q ss_pred HHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1206 VVL------KNAPILLLDEASSSIESESSRVVQEALDTLI-MGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1206 All------r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~-~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||+ .+|++|||||||++||+.+...+.+.|++.. ..++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999999999875 34689999999999876 699999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.+.
T Consensus 228 ~~~~ 231 (258)
T PRK13548 228 VLTP 231 (258)
T ss_pred HhCh
Confidence 8764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=388.53 Aligned_cols=213 Identities=23% Similarity=0.393 Sum_probs=185.4
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCC--cEEEECCeecCCCCHHHHh
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL--GEVLLDGENIKNLKLEWLR 384 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~--G~i~~~g~~~~~~~~~~~~ 384 (1303)
+.|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 5799999999995 3469999999999999999999999999999999999999999 999999999987665 35
Q ss_pred cceEEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
+.|+||+|++.+|. .||+|||.|+. ..+. +++.++++..++.++..+. ..+||||||||+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHL-----------PAQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCC-----------hhhCCHHHHHHHH
Confidence 78999999999995 59999999873 2232 3455556666655554443 4589999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML---GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~---~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
|||||+++|++|+||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987754 789999999999875 59999999999999999999998
Q ss_pred hcC
Q 000751 533 ATG 535 (1303)
Q Consensus 533 ~~~ 535 (1303)
.+.
T Consensus 228 ~~p 230 (362)
T TIGR03258 228 DAP 230 (362)
T ss_pred hCc
Confidence 753
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=367.07 Aligned_cols=212 Identities=29% Similarity=0.452 Sum_probs=183.1
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF---QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe---eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 5799999999743 49999999999999999999999999999999999999999999999999987653 478899
Q ss_pred EEccCCccCcc-cHHHHHHcCCCC--CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYARHN--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||+|.+|++ |++||+.++... .+ ++++.++++..++.++..+. ..+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 999999875421 11 23455666666665544332 34899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
++++|+++||||||++||+++.+.+.+.|.+...+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999986543 689999999999865 5999999999999999999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=357.01 Aligned_cols=214 Identities=30% Similarity=0.495 Sum_probs=187.6
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCe---eCCCCCHHHhh
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGR---DLKLYNLRWLR 1129 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~---di~~~~~~~lR 1129 (1303)
.|+++|++..|+.- ++++|||++|+.||.+|+.||||||||||+++|.|+..|++|.|.+||. |.+++.. -.
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hh
Confidence 47889999999754 4899999999999999999999999999999999999999999999999 7766443 34
Q ss_pred cceEEEccCCccCc-ccHHHHHHcCCC------C--CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1130 NHLGLVQQEPIIFS-TTIRENIIYARH------N--ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~-gTIreNl~~g~~------~--~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
++||+|.|+.-||. .||++||.||.+ . .....+.+.++.++|..+-++-|. +||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~-----------QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA-----------QLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch-----------hcChHHHHH
Confidence 68999999999995 799999999962 1 224566777888888776666553 899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchh-HhhcCEEEEEeCCEEEEecChHHH
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~t-i~~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
+||||||..+|++||||||.+|||++-.+.+.+-|++...+ +.|+++|||+.+. .+.||||+||++|+|...|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 99999999999999999999999999999999999887554 7899999999974 577999999999999999999999
Q ss_pred hhcC
Q 000751 1279 LAKN 1282 (1303)
Q Consensus 1279 l~~~ 1282 (1303)
....
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 8764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=372.61 Aligned_cols=211 Identities=31% Similarity=0.458 Sum_probs=180.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCC---HHHHhc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK---LEWLRS 385 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~~~ 385 (1303)
++++|++++|++ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999952 257999999999999999999999999999999999999999999999999998776 456788
Q ss_pred ceEEEeccccccc-HhHHHHHhcCCC------------CC---HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCCh
Q 000751 386 QIGLVTQEPALLS-LSIRDNIAYGRD------------AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (1303)
Q Consensus 386 ~i~~v~Q~~~l~~-~ti~~ni~~~~~------------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSg 449 (1303)
.++||+|++.+|. .|++||+.++.. .. .+++.++++.. |++......+..|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-----------GLLDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-----------CChhhhCCCcccCCH
Confidence 9999999998886 799999987531 01 12233333333 333344556778999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeecc
Q 000751 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 450 GqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g 526 (1303)
|||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999998874 3899999999999987 59999999999999999
Q ss_pred ChHHHh
Q 000751 527 THDELL 532 (1303)
Q Consensus 527 ~~~~l~ 532 (1303)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=363.81 Aligned_cols=202 Identities=36% Similarity=0.604 Sum_probs=173.4
Q ss_pred EEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEE
Q 000751 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGL 1134 (1303)
Q Consensus 1055 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 1134 (1303)
+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999742 1359999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCC--ccCcccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1135 VQQEP--IIFSTTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1135 VpQdp--~LF~gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
+||+| .+++.|++||+.++.. ..+ ++++.++++..++.+++.+ ....||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99998 3678899999987532 112 2344556666666554433 335899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCE
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGR 1268 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~ 1268 (1303)
|+++|++|||||||++||+.+.+.+.+.|++...+++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999875546899999999998876 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=374.69 Aligned_cols=220 Identities=27% Similarity=0.464 Sum_probs=189.0
Q ss_pred cccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--C
Q 000751 1051 YGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKL--Y 1123 (1303)
Q Consensus 1051 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~ 1123 (1303)
.+.|+++||+++|+++ ++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGDK---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECCe---eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3569999999999642 599999999999999999999999999999999999984 89999999999875 4
Q ss_pred CHHHhhcceEEEccCCccCcccHHHHHHcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChH
Q 000751 1124 NLRWLRNHLGLVQQEPIIFSTTIRENIIYARH--NA-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196 (1303)
Q Consensus 1124 ~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1196 (1303)
+...+|++++|+||++.+|++|++||+.++.. .. . ++++.++++.+++.+.+. +..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678999999999999999999999986521 11 1 234666666666654432 2334556789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecCh
Q 000751 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1197 QrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
||||++||||++++|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|+|++.|++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 251 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDT 251 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999998865 589999999999875 5999999999999999999
Q ss_pred HHHhhc
Q 000751 1276 DSLLAK 1281 (1303)
Q Consensus 1276 ~eLl~~ 1281 (1303)
+++...
T Consensus 252 ~~~~~~ 257 (272)
T PRK14236 252 DTLFTS 257 (272)
T ss_pred HHHhcC
Confidence 999865
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=380.09 Aligned_cols=226 Identities=25% Similarity=0.383 Sum_probs=187.3
Q ss_pred cEEEEeeEEECCCCC-------CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH
Q 000751 1053 SIELKNVDFCYPSRP-------EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~-------~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~ 1125 (1303)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 2369999999999999999999999999999999999999999999999999998875
Q ss_pred H---HhhcceEEEccCCc--cCc-ccHHHHHHcCC---CCCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCC
Q 000751 1126 R---WLRNHLGLVQQEPI--IFS-TTIRENIIYAR---HNAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVD 1192 (1303)
Q Consensus 1126 ~---~lR~~i~~VpQdp~--LF~-gTIreNl~~g~---~~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~ 1192 (1303)
+ .+|++|+||+|+|. |++ -||.+|+.... ...+ .+++.++++.+++.+ .+++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCC----Ccc
Confidence 3 56889999999994 555 49999985321 1112 234566677666632 123332 347
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEE
Q 000751 1193 LTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIV 1270 (1303)
Q Consensus 1193 LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Iv 1270 (1303)
||||||||++|||||+.+|+|||+||||++||..+.+.|.+.|+++.++ +.|+|+|||+++.+. .||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987543 689999999999986 59999999999999
Q ss_pred EecChHHHhhcC-chhHHH
Q 000751 1271 EEGTHDSLLAKN-GLYVRL 1288 (1303)
Q Consensus 1271 e~Gt~~eLl~~~-g~y~~l 1288 (1303)
|.|+.++++++. ..|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 999999999763 345543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=370.35 Aligned_cols=210 Identities=29% Similarity=0.474 Sum_probs=179.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++|+|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.|+
T Consensus 3 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEEC---CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 78999999995 3469999999999999999999999999999999999999999999999999876543 257899
Q ss_pred EEeccccccc-HhHHHHHhcCCC---C----CH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 389 LVTQEPALLS-LSIRDNIAYGRD---A----TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~~---~----~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
||+|+|.+|. .|++||+.++.. . +. +++.++++..++ +........+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQL-----------DWLADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHHH
Confidence 9999999885 699999998631 1 21 223334444443 33334455689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
|||||+.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999875 599999999999999999998865
Q ss_pred c
Q 000751 534 T 534 (1303)
Q Consensus 534 ~ 534 (1303)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 3
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=371.48 Aligned_cols=218 Identities=26% Similarity=0.433 Sum_probs=184.5
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--CH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKLY--NL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1125 (1303)
.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGEK---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCCe---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 69999999999642 499999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCC--CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
..+|+.++||||++.+|+.|++||+.++.. ..+. +++.++++.+++.+.+ +..++ .....|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~----~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET---SDRLK----SPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch---hhhhc----CChhhCCHHHHH
Confidence 567889999999999999999999986521 1222 2345566666653222 11223 344589999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
|++|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998754 699999999999875 5999999999999999999999
Q ss_pred hhc
Q 000751 1279 LAK 1281 (1303)
Q Consensus 1279 l~~ 1281 (1303)
.++
T Consensus 241 ~~~ 243 (258)
T PRK14268 241 FHN 243 (258)
T ss_pred hcC
Confidence 764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=369.84 Aligned_cols=212 Identities=26% Similarity=0.435 Sum_probs=182.1
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh-hcce
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL-RNHL 1132 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~i 1132 (1303)
|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDGF---KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCCe---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 7899999999742 59999999999999999999999999999999999999999999999999988876644 5679
Q ss_pred EEEccCCccCcc-cHHHHHHcCCCCC--------------CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARHNA--------------SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~~~--------------~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
+|+||++.+|++ |++||+.++.... .++++.++++.. |++.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHH
Confidence 999999999986 9999998753210 112233334333 33333444556899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChH
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHD 1276 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~ 1276 (1303)
|||++||||++++|++|||||||++||+++.+.+.+.|++... ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHH
Confidence 9999999999999999999999999999999999999998755 589999999999886 49999999999999999999
Q ss_pred HHhh
Q 000751 1277 SLLA 1280 (1303)
Q Consensus 1277 eLl~ 1280 (1303)
++.+
T Consensus 228 ~~~~ 231 (242)
T TIGR03411 228 QVQA 231 (242)
T ss_pred HHhc
Confidence 9875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=372.81 Aligned_cols=219 Identities=28% Similarity=0.433 Sum_probs=186.6
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CC
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--YN 1124 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 1124 (1303)
..|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGTF---EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECCE---EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 369999999999643 49999999999999999999999999999999999987 589999999999863 56
Q ss_pred HHHhhcceEEEccCCccCcccHHHHHHcCCCC--CC---HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARHN--AS---EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~~---~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
...+|++++||||+|.+|+.|++||+.++... .. ++++.++++.+++.+.+ +........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 67889999999999999999999999875421 11 34456666666654322 22333445689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeC-----------C
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNG-----------G 1267 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~-----------G 1267 (1303)
|++|||||+++|++|||||||++||+.+...+.+.|++... ++|+|++||+++.+ ..||+|++|++ |
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g 240 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVG 240 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccc
Confidence 99999999999999999999999999999999999998754 58999999999877 46999999996 7
Q ss_pred EEEEecChHHHhhc
Q 000751 1268 RIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1268 ~Ive~Gt~~eLl~~ 1281 (1303)
+++|.|+++++.+.
T Consensus 241 ~~~~~~~~~~~~~~ 254 (269)
T PRK14259 241 YLVEFNETKKIFNS 254 (269)
T ss_pred eEEEeCCHHHHHhC
Confidence 79999999999864
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=370.78 Aligned_cols=218 Identities=26% Similarity=0.432 Sum_probs=184.3
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCCC--CH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD--P---VAGQVLLDGRDLKLY--NL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~--~---~~G~I~idG~di~~~--~~ 1125 (1303)
.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~~---~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNKK---KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECCe---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 48999999999743 49999999999999999999999999999999999954 6 489999999998653 34
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCC--C-CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARH--N-AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~-~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++||||+|.+|+.|++||+.++.. . .. ++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999986421 1 11 234455666666543332 223445568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998755 589999999999765 599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14239 234 MFMN 237 (252)
T ss_pred HHhC
Confidence 9865
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=364.42 Aligned_cols=199 Identities=27% Similarity=0.467 Sum_probs=170.8
Q ss_pred EEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEE
Q 000751 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGL 1134 (1303)
Q Consensus 1055 ~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~ 1134 (1303)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 46899999964 25999999999999999999999999999999999999999999999998764 47889999
Q ss_pred EccCCcc---CcccHHHHHHcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1135 VQQEPII---FSTTIRENIIYARHN----------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1135 VpQdp~L---F~gTIreNl~~g~~~----------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
|||+|.+ |+.|++||+.++... ..++++.++++..++.++..+. ..+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHH
Confidence 9999986 668999999875321 1134567777777776655432 347999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEec
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~G 1273 (1303)
+|||||+++|++|||||||++||+.+.+.+.+.|++..++++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875456899999999998864 8999999886 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=371.90 Aligned_cols=219 Identities=26% Similarity=0.434 Sum_probs=184.4
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+|+|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGNY---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 48999999999643 59999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN--A-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|+.++|++|+|.+|+.|++||+.++... . . ++++.++++.+++++.. + ........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHH
Confidence 6778899999999999999999999865321 1 1 23445556665553211 1 112334568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|++|||||||++||+++.+.+.+.|++... ++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998754 5899999999998754 99999999999999999999
Q ss_pred HhhcC
Q 000751 1278 LLAKN 1282 (1303)
Q Consensus 1278 Ll~~~ 1282 (1303)
+....
T Consensus 233 ~~~~~ 237 (251)
T PRK14251 233 MFIAP 237 (251)
T ss_pred HHhCC
Confidence 97653
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=374.88 Aligned_cols=218 Identities=27% Similarity=0.460 Sum_probs=188.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
-|+++||+|+|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999643234699999999999999999999999999999999999999999999999999877777888999
Q ss_pred EEEeccc--ccccHhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 388 GLVTQEP--ALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 388 ~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
+||+|+| .++..|+.|||.++. ..+.+ ++.++++.+++.++.. .....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 9999998 366889999998763 23333 3455566666654433 23468999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhcCh
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 536 (1303)
|||+++|++|||||||++||+.+.+.+.+.+.++.+ |+|+|++||+++.+..||+|++|++|++++.|+++++....+
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 999999999999999999999999999999988753 899999999999988899999999999999999999876543
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=371.74 Aligned_cols=218 Identities=23% Similarity=0.414 Sum_probs=185.0
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD--P---VAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~--~---~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|++||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQH---HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECCe---eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 48999999999743 49999999999999999999999999999999999997 3 58999999999864 455
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC---CCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN---ASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~---~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++|+||+|.+|+.|++||+.++... .+++ ++.++++..++.+++. ........+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6788999999999999999999999865321 1222 3444555666544332 223345568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+||||||||++||+.+...+.+.|++... ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999998754 589999999999875 599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+..+
T Consensus 241 ~~~~ 244 (259)
T PRK14274 241 MFSN 244 (259)
T ss_pred HhhC
Confidence 8765
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=369.75 Aligned_cols=219 Identities=28% Similarity=0.477 Sum_probs=186.1
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CC
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKL--YN 1124 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~ 1124 (1303)
|.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGDF---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 568999999999743 499999999999999999999999999999999999863 68999999999875 45
Q ss_pred HHHhhcceEEEccCCccCcccHHHHHHcCCC--CC-----CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARH--NA-----SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-----~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
...+|++++||||+|.+|+.|++||+.++.. .. .++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 5678999999999999999999999987531 11 1234555666666543332 12334456899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChH
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHD 1276 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~ 1276 (1303)
|||++||||++.+|++|||||||++||+.+...+.+.|++... ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTV 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999998754 689999999999775 59999999999999999999
Q ss_pred HHhhc
Q 000751 1277 SLLAK 1281 (1303)
Q Consensus 1277 eLl~~ 1281 (1303)
++...
T Consensus 231 ~~~~~ 235 (250)
T PRK14240 231 DLFTN 235 (250)
T ss_pred HHHhC
Confidence 98764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=371.80 Aligned_cols=214 Identities=26% Similarity=0.401 Sum_probs=186.1
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 2 l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGGR---LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECCE---EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 6899999999643 5999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccCCc-cCcccHHHHHHcCCCC----------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHH
Q 000751 1134 LVQQEPI-IFSTTIRENIIYARHN----------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1134 ~VpQdp~-LF~gTIreNl~~g~~~----------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRla 1202 (1303)
|+||+|. .+..|++||+.++... ..++++.++++.+++.+... .....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999995 4568999999875310 01234566666666654432 234589999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1203 LARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
||||++.+|+++||||||++||+.+...+.+.|++...+++|+|++||+++.+ ..||+|++|++|++++.|+++++...
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP 227 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhCH
Confidence 99999999999999999999999999999999998755468999999999988 56999999999999999999998753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=371.63 Aligned_cols=210 Identities=27% Similarity=0.410 Sum_probs=179.3
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH---HHHhc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~~~ 385 (1303)
|+++||+++|+ .+.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYP--NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecC--CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 68999999995 13579999999999999999999999999999999999999999999999999887654 34678
Q ss_pred ceEEEeccccccc-HhHHHHHhcCCC-C-----------C---HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCCh
Q 000751 386 QIGLVTQEPALLS-LSIRDNIAYGRD-A-----------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449 (1303)
Q Consensus 386 ~i~~v~Q~~~l~~-~ti~~ni~~~~~-~-----------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSg 449 (1303)
+++||+|++.+|. .|++||+.++.. . . ++++.++++..+ ++........+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVG-----------LADKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcC-----------cHhhhcCCcccCCH
Confidence 8999999998886 699999987631 1 1 122333333333 33344556678999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeecc
Q 000751 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 450 GqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g 526 (1303)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998874 3789999999999985 59999999999999999
Q ss_pred ChHHH
Q 000751 527 THDEL 531 (1303)
Q Consensus 527 ~~~~l 531 (1303)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 99886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=384.34 Aligned_cols=209 Identities=26% Similarity=0.438 Sum_probs=178.1
Q ss_pred ceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCe----eCCCCCHHHhh----cceEEEccCCcc
Q 000751 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGR----DLKLYNLRWLR----NHLGLVQQEPII 1141 (1303)
Q Consensus 1070 ~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~----di~~~~~~~lR----~~i~~VpQdp~L 1141 (1303)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. ++...+.+.+| ++|+||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999999999999999996 67777665543 589999999999
Q ss_pred Cc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEE
Q 000751 1142 FS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL 1214 (1303)
Q Consensus 1142 F~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~IL 1214 (1303)
|+ .|++||+.++.. ..+ .+.+.++++.+++.++....| .+||||||||++|||||+++|+||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98 699999987632 112 234566777777765544333 379999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhc-CchhHHHH
Q 000751 1215 LLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLM 1289 (1303)
Q Consensus 1215 lLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~-~g~y~~l~ 1289 (1303)
|||||||+||+.+.+.+++.|.++.++ ++|+|+|||+++.+ +.||+|++|++|++++.|++++++.+ .+.|.+.+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~ 264 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHH
Confidence 999999999999999999999987543 68999999999986 66999999999999999999999875 34454433
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=364.71 Aligned_cols=202 Identities=32% Similarity=0.517 Sum_probs=172.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.|+
T Consensus 1 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeC---CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 47899999995 3579999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEeccccccc-HhHHHHHhcCCC---CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGRD---ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
||+|++.+|. .|++||+.++.. .+. +++.++++..++.++ ......+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHHH
Confidence 9999998885 699999987631 222 234444555544433 334446899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeecc
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g 526 (1303)
|+++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998874 3899999999999875 49999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=378.38 Aligned_cols=216 Identities=21% Similarity=0.396 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCC---------
Q 000751 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--------- 377 (1303)
Q Consensus 309 i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--------- 377 (1303)
|+++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999996321 1369999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHHhcceEEEeccc--ccccHhHHHHHhcCC---CCCHHH----HHHHHHHhcchHHHHhcc
Q 000751 378 ---------------LKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLE 433 (1303)
Q Consensus 378 ---------------~~~~~~~~~i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~~----~~~~~~~~~~~~~i~~l~ 433 (1303)
.+...+++.||||+|+| .+|..||+|||.|+. ..+.++ +.++++.+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------ 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE------ 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh------
Confidence 13456788999999986 688899999999874 233333 344444444421
Q ss_pred cccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccc-ccc
Q 000751 434 KGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLI-RNA 511 (1303)
Q Consensus 434 ~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~-~~~ 511 (1303)
.........||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+ +.|
T Consensus 157 ----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a 232 (305)
T PRK13651 157 ----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232 (305)
T ss_pred ----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC
Confidence 22345567899999999999999999999999999999999999999999998874 489999999999976 469
Q ss_pred CEEEEEeCceEeeccChHHHhhc
Q 000751 512 DYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 512 d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|+|++|++|+|++.|+.+++.+.
T Consensus 233 drv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 233 KRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998654
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.71 Aligned_cols=210 Identities=28% Similarity=0.422 Sum_probs=179.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++||+++|++. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999531 25799999999999999999999999999999999999999999999999998754 356778899
Q ss_pred EEecccccc-cHhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALL-SLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~-~~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
||+|++.+| ..|++||+.++. .... +++.++++..++.+. ......+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHHHHHHH
Confidence 999999988 579999998752 1222 234444554444332 233345799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998877899999999999986 4999999999999999998765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=389.31 Aligned_cols=220 Identities=24% Similarity=0.422 Sum_probs=192.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 489999999995 35799999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeccccc-ccHhHHHHHhcCC-C----------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 388 GLVTQEPAL-LSLSIRDNIAYGR-D----------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 388 ~~v~Q~~~l-~~~ti~~ni~~~~-~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
|||+|++.+ |+.|++||+.+++ . .+.+++.++++..++.++.. .....||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999987 5789999999874 1 12345666777777655443 33468999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
+|||||+++|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 5889999999999985 599999999999999999999876
Q ss_pred cChhHHHHH
Q 000751 534 TGDLYAELL 542 (1303)
Q Consensus 534 ~~~~~~~~~ 542 (1303)
. ....+.+
T Consensus 229 ~-~~l~~~~ 236 (402)
T PRK09536 229 A-DTLRAAF 236 (402)
T ss_pred c-HHHHHHh
Confidence 4 3334443
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=370.94 Aligned_cols=233 Identities=24% Similarity=0.394 Sum_probs=191.5
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCCC-HH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKLYN-LR 1126 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~~-~~ 1126 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAGK---TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECCE---EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 58999999999743 599999999999999999999999999999999999986 6999999999998763 45
Q ss_pred HhhcceEEEccCCccCcccHHHHHHcCCC---CCCHHHHH----HHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1127 WLRNHLGLVQQEPIIFSTTIRENIIYARH---NASEAEVK----EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~---~~~~~ei~----~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
.+|++++|+||+|.+|+.|+++|+.++.. ..+++++. +.++.+++.+. +++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 77899999999999999999999987531 12444432 33444444222 223344556789999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
|++||||++++|+||||||||++||+.+.+.+.+.|++... ++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998765 489999999999875 5999999999999999999999
Q ss_pred hhcCc--hhHHHHhhhhhcc
Q 000751 1279 LAKNG--LYVRLMQPHYGKG 1296 (1303)
Q Consensus 1279 l~~~g--~y~~l~~~~~~~~ 1296 (1303)
.+... .-+.+.....++-
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~ 269 (276)
T PRK14271 250 FSSPKHAETARYVAGLSGDV 269 (276)
T ss_pred HhCcCcHHHHHHHhhcCCcc
Confidence 87532 2233444444443
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=367.00 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=178.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHH-hcce
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQI 387 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 387 (1303)
|+++||+++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 57899999995 3479999999999999999999999999999999999999999999999999988776554 6789
Q ss_pred EEEecccccccH-hHHHHHhcCCC-CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCC
Q 000751 388 GLVTQEPALLSL-SIRDNIAYGRD-ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (1303)
Q Consensus 388 ~~v~Q~~~l~~~-ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~ 465 (1303)
+|++|++.+|.. |++||+.++.. ....+..+.+ .+.++.++ +++.........||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL-----ERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHH-----HHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998875 99999998642 1111111111 11222221 1233344566789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHh
Q 000751 466 SILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 466 ~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999998875 5799999999999875 49999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=370.41 Aligned_cols=218 Identities=27% Similarity=0.448 Sum_probs=185.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcc---ccC--CccEEEECCeeCCCC--CH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF---YDP--VAGQVLLDGRDLKLY--NL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl---~~~--~~G~I~idG~di~~~--~~ 1125 (1303)
.|+++|+++.|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999964 2499999999999999999999999999999999997 454 589999999998764 34
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC--C-----CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN--A-----SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~-----~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++||||+|.+|+.|++||+.++... . .++++.++++.+++.+++. +.......+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 6778899999999999999999999865311 1 1234556666666543332 233455668999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+ ..||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~ 231 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKK 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999998754 69999999999987 4599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14245 232 IFTN 235 (250)
T ss_pred HhcC
Confidence 9865
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=371.29 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=188.8
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcc
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
-.|+++||+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++
T Consensus 6 ~~l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECCE---EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 369999999999742 59999999999999999999999999999999999999999999999999998888888899
Q ss_pred eEEEccCCccCc-ccHHHHHHcCC-CC---------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1132 LGLVQQEPIIFS-TTIRENIIYAR-HN---------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1132 i~~VpQdp~LF~-gTIreNl~~g~-~~---------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
++||||++.+|. .|++||+.++. +. ..++.+.++++..++.++..+ ....||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHH
Confidence 999999998875 69999998752 10 112356677777777655433 345899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHH
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+. ++|+|++||+++.+ ..||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999987542 68999999999976 45999999999999999999998
Q ss_pred hhc
Q 000751 1279 LAK 1281 (1303)
Q Consensus 1279 l~~ 1281 (1303)
...
T Consensus 232 ~~~ 234 (265)
T PRK10253 232 VTA 234 (265)
T ss_pred hhH
Confidence 753
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=369.27 Aligned_cols=218 Identities=28% Similarity=0.473 Sum_probs=186.3
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV-----AGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~-----~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|. +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~~---~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECCe---eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 58999999999642 4999999999999999999999999999999999999987 6999999999865 345
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN--A-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|+.++||||+|.+|+.|++||+.++... . . ++.+.++++..++++.+. ........+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 6789999999999999999999999875311 1 1 223444555566554332 223455678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999874 46999999999998765 79999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14249 233 IFSR 236 (251)
T ss_pred HHhC
Confidence 9765
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=370.48 Aligned_cols=231 Identities=26% Similarity=0.454 Sum_probs=191.6
Q ss_pred cEEEEeeEEECCCC------CCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHH
Q 000751 1053 SIELKNVDFCYPSR------PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR 1126 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~ 1126 (1303)
.|+++||+++|+.. ...++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 123699999999999999999999999999999999999999999999999999766666
Q ss_pred HhhcceEEEccCCc--cCc-ccHHHHHHcCC---CCCC----HHHHHHHHHHhchH-HHHHhCCCCcccccCCCCCCCCh
Q 000751 1127 WLRNHLGLVQQEPI--IFS-TTIRENIIYAR---HNAS----EAEVKEAARIANAH-HFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp~--LF~-gTIreNl~~g~---~~~~----~~ei~~al~~a~l~-~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
..|++++||||+|. +++ -|+.+|+.++. .... ++++.++++.+++. +... . ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------Y----YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------c----CchhcCH
Confidence 67788999999985 444 38999986431 1111 24566777777763 3322 2 2247999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEec
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~G 1273 (1303)
|||||++||||++++|+||||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999999987542 6899999999999876 9999999999999999
Q ss_pred ChHHHhhcC--chhHHHHhhhhh
Q 000751 1274 THDSLLAKN--GLYVRLMQPHYG 1294 (1303)
Q Consensus 1274 t~~eLl~~~--g~y~~l~~~~~~ 1294 (1303)
+++++.+.. ..+++++..+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~ 255 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGHFG 255 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhccC
Confidence 999998763 457777765543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=370.25 Aligned_cols=221 Identities=26% Similarity=0.462 Sum_probs=183.4
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh-hcc
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL-RNH 1131 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~ 1131 (1303)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999998876554 456
Q ss_pred eEEEccCCccCcc-cHHHHHHcCCCCC---------------CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCCh
Q 000751 1132 LGLVQQEPIIFST-TIRENIIYARHNA---------------SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1132 i~~VpQdp~LF~g-TIreNl~~g~~~~---------------~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSg 1195 (1303)
++|+||+|.+|++ |++||+.++.... .+.+ .+. .....++++.+ |++........+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEA--LDRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHH--HHHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999986 9999998753110 0000 000 01122333333 444444555668999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEec
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1196 GQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~G 1273 (1303)
|||||++||||++++|++|||||||++||+.+.+.+.+.|.+..++ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 9999999999999999999999999999999999999999987543 6899999999998854 9999999999999999
Q ss_pred ChHHHhhc
Q 000751 1274 THDSLLAK 1281 (1303)
Q Consensus 1274 t~~eLl~~ 1281 (1303)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (255)
T PRK11300 237 TPEEIRNN 244 (255)
T ss_pred CHHHHhhC
Confidence 99998754
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=372.51 Aligned_cols=217 Identities=27% Similarity=0.453 Sum_probs=184.2
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCCCC--HH
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKLYN--LR 1126 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~~--~~ 1126 (1303)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |.+|+|+++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 259999999999999999999999999999999999986 46999999999987653 34
Q ss_pred HhhcceEEEccCCccCcccHHHHHHcCCC--CC------CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1127 WLRNHLGLVQQEPIIFSTTIRENIIYARH--NA------SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~------~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
.+|++++||||++.+|++|++||+.++.. +. .++++.++++..++.+.+ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 67889999999999999999999986521 11 123455666666654332 1233445668999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998754 699999999999876 599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.+.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 9865
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=381.74 Aligned_cols=214 Identities=29% Similarity=0.472 Sum_probs=183.4
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+ ...|++|
T Consensus 41 ~i~i~nl~k~y~~~---~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGDK---AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 59999999999643 4999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred EEEccCCccC-cccHHHHHHcCCC--CCCHHH----HHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIF-STTIRENIIYARH--NASEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF-~gTIreNl~~g~~--~~~~~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
+||||++.+| ..|++||+.+... ..+.++ +.++++.++ +++..++.++ +||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~~~----~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADARVS----DLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCChh----hCCHHHHHHHHHHH
Confidence 9999999987 4699999975321 122222 223333333 3444555554 79999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
||+.+|++|||||||++||+.+.+.+++.|++....++|+|++||+++.+. .||+|++|++|+|++.|+++++.++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999987655799999999999885 5999999999999999999999764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=372.78 Aligned_cols=218 Identities=26% Similarity=0.415 Sum_probs=184.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGEK---RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCCc---eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 58999999999642 49999999999999999999999999999999999865 689999999999875 345
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN--A-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++|+||+|.+|++|++||+.++... . . ++.+.++++.+++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 5778899999999999999999999865211 0 1 233555565555532211 122344568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998755 589999999999765 699999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+..+
T Consensus 250 ~~~~ 253 (268)
T PRK14248 250 IFTS 253 (268)
T ss_pred HHhC
Confidence 9865
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=362.61 Aligned_cols=205 Identities=23% Similarity=0.405 Sum_probs=175.1
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHH---Hhhc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR---WLRN 1130 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR~ 1130 (1303)
|+++||+++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999532 2599999999999999999999999999999999999999999999999999887654 3688
Q ss_pred ceEEEccCCccC-cccHHHHHHcCC--CCCCHH----HHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1131 HLGLVQQEPIIF-STTIRENIIYAR--HNASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1131 ~i~~VpQdp~LF-~gTIreNl~~g~--~~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
+++|+||+|.+| +.|++||+.++. ...+++ ++.++++..++.++..+. ..+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHH
Confidence 999999999875 679999998752 112322 345666666665544332 34899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEE
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVE 1271 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive 1271 (1303)
|||++++|++|||||||++||+.+.+.+.+.|++..++++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999875556899999999998865 89999999999864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=361.15 Aligned_cols=198 Identities=29% Similarity=0.474 Sum_probs=171.9
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 000751 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (1303)
Q Consensus 310 ~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 389 (1303)
+++|++++|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++|+|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 36899999952 1579999999999999999999999999999999999999999999999998754 456778999
Q ss_pred Eeccc--ccccHhHHHHHhcCC-C--CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC
Q 000751 390 VTQEP--ALLSLSIRDNIAYGR-D--ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (1303)
Q Consensus 390 v~Q~~--~l~~~ti~~ni~~~~-~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~ 464 (1303)
++|++ .++..|++||+.++. . ..++++.++++..++.++..+.| ..||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467889999999864 1 22346777777777765544433 47999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCCcccc-ccCEEEEEeCceEe
Q 000751 465 PSILLLDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIR-NADYIAVMDEGRLF 523 (1303)
Q Consensus 465 ~~ililDe~ts~lD~~~~~~i~~~l~~~-~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~ 523 (1303)
|++|||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+. .||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 46899999999999986 49999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=369.40 Aligned_cols=218 Identities=27% Similarity=0.476 Sum_probs=185.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--CH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKLY--NL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGEK---KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCCc---eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 48999999999642 599999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN---AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~---~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++|+||+|.+|+.|++||+.++... .. ++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 5678899999999999999999999864211 11 233556666666644332 223445668999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+ ..||+|++|++|++++.|++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999999998755 59999999999976 4599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.++
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 9865
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=375.03 Aligned_cols=214 Identities=26% Similarity=0.463 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecC--CCCHHHHhc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--NLKLEWLRS 385 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~~~ 385 (1303)
-|+++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999952 356999999999999999999999999999999999999999999999999984 344567889
Q ss_pred ceEEEeccc--ccccHhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 386 QIGLVTQEP--ALLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 386 ~i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
.|+||+|++ .+|+.|++||+.++. ..+. +++.++++..++.+ .......+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHH
Confidence 999999998 578899999998753 2232 23444555555543 334556789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988753 899999999999986 599999999999999999999876
Q ss_pred c
Q 000751 534 T 534 (1303)
Q Consensus 534 ~ 534 (1303)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=361.21 Aligned_cols=202 Identities=25% Similarity=0.476 Sum_probs=171.8
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999964 259999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEccCCccCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||++.+|++ |++||+.++.. ..+ ++++.++++..++.+.. .....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHH
Confidence 99999999975 99999976421 111 23344555555544333 33445899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
++.+|++|||||||++||+.+.+.+.+.|++...+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999987555689999999999875 59999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=368.17 Aligned_cols=219 Identities=24% Similarity=0.428 Sum_probs=185.9
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCCC--C
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD--P---VAGQVLLDGRDLKLY--N 1124 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~--~---~~G~I~idG~di~~~--~ 1124 (1303)
|.|+++|++++|++. ++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|++||.++... +
T Consensus 3 ~~l~~~nl~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGKN---HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCCe---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 579999999999742 59999999999999999999999999999999999986 4 689999999998753 4
Q ss_pred HHHhhcceEEEccCCccCc-ccHHHHHHcCCC--C-CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChH
Q 000751 1125 LRWLRNHLGLVQQEPIIFS-TTIRENIIYARH--N-AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~-gTIreNl~~g~~--~-~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1196 (1303)
...+|++++||||++.+|+ .|++||+.++.. . .+ ++++.++++.+++.+.+.. .......+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 5578899999999999998 599999986421 1 11 2345566666666543321 223345689999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecCh
Q 000751 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1197 QrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~ 1275 (1303)
||||++||||++++|++|||||||++||+.+.+.+.+.|++... ++|+|++||+++.+. .||+|++|++|+|++.|++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999998865 589999999999874 6999999999999999999
Q ss_pred HHHhhc
Q 000751 1276 DSLLAK 1281 (1303)
Q Consensus 1276 ~eLl~~ 1281 (1303)
+++...
T Consensus 232 ~~~~~~ 237 (252)
T PRK14256 232 KKIFTT 237 (252)
T ss_pred HHHHhC
Confidence 999865
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=363.73 Aligned_cols=209 Identities=26% Similarity=0.397 Sum_probs=179.7
Q ss_pred cEEEEeeEEECCCCCC-cceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH---h
Q 000751 1053 SIELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW---L 1128 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~---l 1128 (1303)
.|+++||+++|++... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975321 25999999999999999999999999999999999999999999999999998887653 3
Q ss_pred -hcceEEEccCCccCcc-cHHHHHHcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1129 -RNHLGLVQQEPIIFST-TIRENIIYARH--NA----SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1129 -R~~i~~VpQdp~LF~g-TIreNl~~g~~--~~----~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
+++++|+||+|.+|+. |++||+.++.. .. ..+++.++++..++.+++...| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999875 99999976321 11 1345677777777766655443 3799999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhhcCEEEEEeCCEEEEe
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVEE 1272 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~ 1272 (1303)
++|||||+++|++|||||||++||+.+...+.+.|++..++ ++|+|+|||+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999887443 6899999999999889999999999999874
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=367.53 Aligned_cols=214 Identities=30% Similarity=0.478 Sum_probs=180.9
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHH---HHh
Q 000751 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (1303)
Q Consensus 309 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~~ 384 (1303)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996321 12799999999999999999999999999999999999999999999999999876543 347
Q ss_pred cceEEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
+.|+|++|++.+|. .|++||+.++. ..+. +++.++++..++ +........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGL-----------EDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-----------hhhhhcChhhCCHHHHHHHH
Confidence 88999999999996 69999998752 1222 233444444444 33344455689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
||||++++|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998875 38999999999999864 99999999999999999888754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=366.64 Aligned_cols=215 Identities=29% Similarity=0.461 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 68999999995 346999999999999999999999999999999999999999999999999998766544 45899
Q ss_pred EEeccccc-ccHhHHHHHhcCC---CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC
Q 000751 389 LVTQEPAL-LSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (1303)
Q Consensus 389 ~v~Q~~~l-~~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~ 464 (1303)
|++|++.+ +..|++||+.++. ....++..+ .+.+.++.+ |++.........||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 4689999998753 222222211 122334433 555556667779999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhc
Q 000751 465 PSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 465 ~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 48999999999999888999999999999999999888764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=388.41 Aligned_cols=211 Identities=26% Similarity=0.432 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++.|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999876653 5689
Q ss_pred EEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
+||+|++.+|. .|++|||.|+. ..+. +++.++++..++.++. .....+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999999995 69999999874 2222 3455555655554443 3344589999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988743 899999999999875 5999999999999999999998764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=365.26 Aligned_cols=203 Identities=30% Similarity=0.438 Sum_probs=171.4
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHH----HH
Q 000751 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE----WL 383 (1303)
Q Consensus 309 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~ 383 (1303)
|+++||+++|++.. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999995311 14799999999999999999999999999999999999999999999999999877643 24
Q ss_pred hcceEEEecccccccH-hHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 384 RSQIGLVTQEPALLSL-SIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 384 ~~~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
+++++||+|++.+|.. |++||+.++.. .. ++++.++++..+ ++........+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVG-----------LGDRLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC-----------CchhhhcChhhcCHHHHHHH
Confidence 5789999999999875 99999998631 12 123344444444 34344455568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccccCEEEEEeCceE
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRL 522 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~~d~i~~l~~G~i 522 (1303)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999988754 8999999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=362.42 Aligned_cols=211 Identities=29% Similarity=0.490 Sum_probs=185.2
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|++. ..|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .+++++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 7899999999632 239999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEccCCccCcc-cHHHHHHcCC-CC-----CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYAR-HN-----ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~-~~-----~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||+|.+|++ |++||+.++. +. ..++++.++++..++.+.+.+.|. .||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG-----------QLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc-----------cCCHHHHHHHHHHHH
Confidence 99999999985 9999998653 11 124567888888888877766653 799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
++++|++|||||||++||+.+.+.+.+.|++..++ ++|+|++||+++.+. .||+|++|++|++++.|+++++....
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 99999999999999999999999999999987542 689999999999875 59999999999999999999998654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=372.56 Aligned_cols=218 Identities=28% Similarity=0.457 Sum_probs=187.4
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCC--CC
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LK 379 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 379 (1303)
+.|+++||+++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 18 ~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 4699999999995 34699999999999999999999999999999999999975 89999999999864 34
Q ss_pred HHHHhcceEEEecccccccHhHHHHHhcCC---CC--C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChH
Q 000751 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA--T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (1303)
Q Consensus 380 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgG 450 (1303)
...+|+.|+||+|++.+|..|+.||+.++. .. . .+++.++++..++.+++. +.....+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 567888999999999999889999998753 11 1 233455666666544332 2334567789999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChH
Q 000751 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 451 qkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~ 529 (1303)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877899999999999985 59999999999999999999
Q ss_pred HHhhc
Q 000751 530 ELLAT 534 (1303)
Q Consensus 530 ~l~~~ 534 (1303)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14235 248 KMFTN 252 (267)
T ss_pred HHHhC
Confidence 88643
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=359.23 Aligned_cols=202 Identities=28% Similarity=0.498 Sum_probs=176.3
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999642 1 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCccCcc-cHHHHHHcCCC-C-----CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYARH-N-----ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~-~-----~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|++|+|.+|++ |++||+.++.. . .+++++.++++.+++.+...+.| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999987532 1 12446788888888877666554 3799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhh-cCEEEEEeCCEEEEec
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~G 1273 (1303)
++++|++|||||||++||+++...+.+.|++..++ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999987532 6899999999998855 9999999999998865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=366.42 Aligned_cols=219 Identities=22% Similarity=0.406 Sum_probs=183.7
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHH-hhcc
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW-LRNH 1131 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~-lR~~ 1131 (1303)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999964 25999999999999999999999999999999999999999999999999998877644 5788
Q ss_pred eEEEccCCccCcc-cHHHHHHcCCC---CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHH
Q 000751 1132 LGLVQQEPIIFST-TIRENIIYARH---NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVV 1207 (1303)
Q Consensus 1132 i~~VpQdp~LF~g-TIreNl~~g~~---~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAl 1207 (1303)
++|+||++.+|++ |++||+.++.. ..+.++.+ ..+.+.++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999999974 99999987531 11222111 1123344443 444444555668999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1208 LKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1208 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
+++|++|||||||++||+.+...+.+.+++....++|+|++||+++.+ ..||+|++|++|++++.|++++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999988755568999999999765 56999999999999999999998754
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=371.49 Aligned_cols=215 Identities=30% Similarity=0.489 Sum_probs=185.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.++++|++++|++ +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.|
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 5899999999963 245799999999999999999999999999999999999999999999999999887777889999
Q ss_pred EEEeccc--ccccHhHHHHHhcCC---CCCHHH----HHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 388 GLVTQEP--ALLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 388 ~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
+||+|+| .++..|++||+.++. ..+.++ +.++++..++.+++ .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHHHHHH
Confidence 9999998 455789999999863 233332 34445555554443 344568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhc
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 4899999999998888999999999999999998887654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=366.31 Aligned_cols=209 Identities=25% Similarity=0.399 Sum_probs=177.4
Q ss_pred cEEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH---H
Q 000751 308 NIEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L 383 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 383 (1303)
-++++||+|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996322 146999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-cceEEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHH
Q 000751 384 R-SQIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (1303)
Q Consensus 384 ~-~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqr 454 (1303)
+ +.|+|++|++.+|. .|++||+.++. .... +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 67999999999886 59999998742 2222 2334444444 34444455567899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccccCEEEEEeCceEeeccC
Q 000751 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (1303)
Q Consensus 455 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~ 527 (1303)
++||||++.+|+||||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4899999999999998889999999999998775
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=361.14 Aligned_cols=210 Identities=25% Similarity=0.424 Sum_probs=187.8
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH----HHHhc
Q 000751 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL----EWLRS 385 (1303)
Q Consensus 310 ~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~----~~~~~ 385 (1303)
.+.|++|+|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 56899999963 3579999999999999999999999999999999999999999999999998876542 33567
Q ss_pred ceEEEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCC
Q 000751 386 QIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (1303)
Q Consensus 386 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~ 465 (1303)
.++|++|++.+|+.|++||+.++...++++..++++.+++.+++..+|.|++|.++....+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999987655666778888889998889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEecCCccccccCEEEEEeCce
Q 000751 466 SILLLDEVTGGLDFEAERAVQE--ALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGR 521 (1303)
Q Consensus 466 ~ililDe~ts~lD~~~~~~i~~--~l~~~~-~~~t~i~ith~~~~~~~~d~i~~l~~G~ 521 (1303)
++|||||||++||+.+...+.+ .++.+. .++|+|++||+++.+..||++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999888877 454443 4789999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=365.44 Aligned_cols=212 Identities=30% Similarity=0.482 Sum_probs=185.1
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++. ++|+|+||+|+|||+++|+|+||||||||+++|.|+++|.+|+|++||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~~---~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF---VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 5799999999743 59999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EEccCCccCcc-cHHHHHHcCCC--CC----CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYARH--NA----SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~--~~----~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
||||+|.+|.+ |++||+.++.. .. .++++.++++..++.+++...| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999986421 11 1345667777777766665544 4899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
++++|+++||||||++||+.+.+.+.+.|++..++ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999999999999987542 689999999999875 5999999999999999999998764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=349.63 Aligned_cols=178 Identities=35% Similarity=0.650 Sum_probs=165.5
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++.. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQE-QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCCC-ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 57999999997542 2599999999999999999999999999999999999999999999999998776 667889999
Q ss_pred EEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000751 1134 LVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213 (1303)
Q Consensus 1134 ~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~I 1213 (1303)
|+||+|.+|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEEEEec
Q 000751 1214 LLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1214 LlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~Ive~G 1273 (1303)
|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999998754 69999999999999999999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=370.44 Aligned_cols=213 Identities=30% Similarity=0.500 Sum_probs=182.3
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++||+|+|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGG--GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCC--cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 468999999953 156999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCc--cccCCCCCCChHHHHHHHHH
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYET--QVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t--~vg~~g~~LSgGqkqrialA 458 (1303)
||+|++.+|. .|++||+.++. ..+. +++.++++.. |+.. .....+.+||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALV-----------GLDPAEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCCcHHHHhcChhhCCHHHHHHHHHH
Confidence 9999999885 79999998753 1221 2233333333 3332 34556678999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999999988753 899999999999765 5999999999999999999888653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=371.96 Aligned_cols=213 Identities=27% Similarity=0.466 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCC-HHHHhcce
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWLRSQI 387 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~~~~i 387 (1303)
++++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999952 346999999999999999999999999999999999999999999999999998765 45678899
Q ss_pred EEEecccc--cccHhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 388 GLVTQEPA--LLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 388 ~~v~Q~~~--l~~~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
+||+|+|. +++.|++|||.++. ..+.+ ++.++++..++.++ .......||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHHH
Confidence 99999985 56789999999864 12322 33444444444333 3444568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhc
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|||+.+|+||||||||++||+.+...+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998875 58999999999999988999999999999999999887653
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=378.50 Aligned_cols=228 Identities=20% Similarity=0.366 Sum_probs=186.1
Q ss_pred cEEEEeeEEECCCC-CCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCCCHHHh
Q 000751 1053 SIELKNVDFCYPSR-PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV---AGQVLLDGRDLKLYNLRWL 1128 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~-~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~---~G~I~idG~di~~~~~~~l 1128 (1303)
.++++|++++|+.. ...++|+||||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.|+..++.+.+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999642 2246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cceEEEccCC--ccCc-ccHHHHHHcCC---CCCCHHH----HHHHHHHhchHHHHHhCCCCcccccCCCCCCCC
Q 000751 1129 R----NHLGLVQQEP--IIFS-TTIRENIIYAR---HNASEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194 (1303)
Q Consensus 1129 R----~~i~~VpQdp--~LF~-gTIreNl~~g~---~~~~~~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1194 (1303)
| ++|+||||+| .+++ .|+.+|+.... ...+.++ +.+.++.+++ |++. ..++....+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChH-HHhcCCcccCC
Confidence 3 4799999999 4554 47877774211 1123322 3344444433 3332 22456677999
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEe
Q 000751 1195 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEE 1272 (1303)
Q Consensus 1195 gGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~ 1272 (1303)
||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.++ +.|+|+|||+++.+. .||+|+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999987543 689999999999886 5999999999999999
Q ss_pred cChHHHhhc-CchhHHH
Q 000751 1273 GTHDSLLAK-NGLYVRL 1288 (1303)
Q Consensus 1273 Gt~~eLl~~-~g~y~~l 1288 (1303)
|+++++.+. ...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 999999976 3345553
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=370.71 Aligned_cols=219 Identities=26% Similarity=0.486 Sum_probs=186.0
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CC
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--YN 1124 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~ 1124 (1303)
..|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGDE---QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECCE---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 358999999999642 59999999999999999999999999999999999997 689999999999865 35
Q ss_pred HHHhhcceEEEccCCccCcccHHHHHHcCCC-----CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARH-----NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~-----~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
...+|++++||||++.+|+.|++||+.++.. ...+++++++++..++.+.+.. .......+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 5678899999999999999999999986421 1123456667777666433321 223445689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEE-EEeCCEEEEecChHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIV-VLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Ii-vl~~G~Ive~Gt~~e 1277 (1303)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+++ +|++|+|++.|++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998865 4899999999998765 99975 579999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.++
T Consensus 267 ~~~~ 270 (285)
T PRK14254 267 IFEN 270 (285)
T ss_pred HHhC
Confidence 9765
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=377.21 Aligned_cols=228 Identities=21% Similarity=0.328 Sum_probs=184.8
Q ss_pred cEEEEeeEEECCCCCC-cceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc----CCccEEEECCeeCCCCCHHH
Q 000751 1053 SIELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD----PVAGQVLLDGRDLKLYNLRW 1127 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~----~~~G~I~idG~di~~~~~~~ 1127 (1303)
-|+++|++++|+.... ..+|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975321 359999999999999999999999999999999999998 48999999999999998776
Q ss_pred hhc----ceEEEccCCc--cCc-ccHHHHH----HcCCCC---CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCC
Q 000751 1128 LRN----HLGLVQQEPI--IFS-TTIRENI----IYARHN---ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDL 1193 (1303)
Q Consensus 1128 lR~----~i~~VpQdp~--LF~-gTIreNl----~~g~~~---~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~L 1193 (1303)
+|+ +|+||||+|. +++ -|+.+|+ ...... ...+++.++++.+++.+.. ........+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 543 6999999995 443 3665554 322111 1134466777777764321 1123445689
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhH-hhcCEEEEEeCCEEEE
Q 000751 1194 TPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMM-RHVDNIVVLNGGRIVE 1271 (1303)
Q Consensus 1194 SgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive 1271 (1303)
|||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ .+.|+|+|||+++.+ ..||+|+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998754 368999999999988 4699999999999999
Q ss_pred ecChHHHhhc-CchhHHH
Q 000751 1272 EGTHDSLLAK-NGLYVRL 1288 (1303)
Q Consensus 1272 ~Gt~~eLl~~-~g~y~~l 1288 (1303)
.|++++++++ ...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 9999999976 3345443
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=347.11 Aligned_cols=173 Identities=40% Similarity=0.673 Sum_probs=163.1
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++.. .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+++.+.+|++++
T Consensus 1 i~~~~l~~~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGAE-PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCCC-CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 57999999997532 35999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEccCCccCcccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCE
Q 000751 1134 LVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213 (1303)
Q Consensus 1134 ~VpQdp~LF~gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~I 1213 (1303)
|++|+|.+|++|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhhcCEEEEEeCCEE
Q 000751 1214 LLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRI 1269 (1303)
Q Consensus 1214 LlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~~D~Iivl~~G~I 1269 (1303)
|||||||++||+.+.+.+.+.|++..++++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999875556899999999999999999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=367.45 Aligned_cols=219 Identities=23% Similarity=0.415 Sum_probs=186.7
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--CH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKLY--NL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1125 (1303)
.|+++||+++|+++ ++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECCe---eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 48999999999643 499999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN--A-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
...|+.++|+||+|.+|+.|++||+.++... . . ++.+.++++.+++.+.+ .+.......+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 6778899999999999999999999875321 1 1 22345555555553322 2334556678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQ 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHH
Confidence 999999999999999999999999999999999999998765 589999999999885 599999999999999999999
Q ss_pred HhhcC
Q 000751 1278 LLAKN 1282 (1303)
Q Consensus 1278 Ll~~~ 1282 (1303)
+.++.
T Consensus 235 ~~~~~ 239 (253)
T PRK14261 235 IFENP 239 (253)
T ss_pred HHhCC
Confidence 97653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=361.41 Aligned_cols=202 Identities=24% Similarity=0.391 Sum_probs=175.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++|+|+ +.++|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+++.++
T Consensus 1 i~~~~~~~~~~---~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYG---KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEEC---CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 57899999995 346999999999999 99999999999999999999999999999999999988766 67788999
Q ss_pred EEecccccccH-hHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLSL-SIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~~-ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
||+|++.+|.. |++||+.+.. ..+ ++++.++++..++.++.+ .....||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHH
Confidence 99999999875 9999998742 122 234555666666654432 2335799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeecc
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g 526 (1303)
++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877899999999999986 59999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=370.24 Aligned_cols=218 Identities=24% Similarity=0.425 Sum_probs=184.3
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGED---HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 59999999999743 49999999999999999999999999999999999987 699999999999853 455
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCC--CCCH-----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARH--NASE-----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~~~-----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++|+||+|.+|..|++||+.++.. ..++ +.+.++++..++.+ ++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 1221 12334444443322 222333455668999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998765 599999999999875 599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+...
T Consensus 253 ~~~~ 256 (271)
T PRK14238 253 IFSN 256 (271)
T ss_pred HHcC
Confidence 9765
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=361.34 Aligned_cols=202 Identities=31% Similarity=0.475 Sum_probs=171.8
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCC--CCHHHhhcc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL--YNLRWLRNH 1131 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~--~~~~~lR~~ 1131 (1303)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECCe---EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 5789999999743 59999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEccCCccCc-ccHHHHHHcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHH
Q 000751 1132 LGLVQQEPIIFS-TTIRENIIYARH---NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203 (1303)
Q Consensus 1132 i~~VpQdp~LF~-gTIreNl~~g~~---~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaL 1203 (1303)
++|+||+|.+|+ .|++||+.++.. ..+. +++.++++..++.+.+.+ ...+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHH
Confidence 999999999987 699999987531 1222 234445555555443333 335899999999999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEE
Q 000751 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRI 1269 (1303)
Q Consensus 1204 ARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~I 1269 (1303)
|||++++|++|||||||++||+.+.+.+.+.|++..+.++|+|++||+++.+. .||+|++|++|+|
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999987555689999999999886 5999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=361.86 Aligned_cols=211 Identities=23% Similarity=0.424 Sum_probs=180.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGDA---KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCCc---eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 58999999999643 499999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCccCcccHHHHHHcCC---CC-CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHh
Q 000751 1133 GLVQQEPIIFSTTIRENIIYAR---HN-ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1133 ~~VpQdp~LF~gTIreNl~~g~---~~-~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAll 1208 (1303)
+|++|+|.+|+.|++||+.++. .. ..++++.++++..++.+ +.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998632 11 12233444555544421 2234455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHhhcCEEEEEe-CCEEEEecChH
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLN-GGRIVEEGTHD 1276 (1303)
Q Consensus 1209 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~~D~Iivl~-~G~Ive~Gt~~ 1276 (1303)
++|++|||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999987542 689999999999999999999995 66678889885
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=368.29 Aligned_cols=218 Identities=28% Similarity=0.428 Sum_probs=187.5
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGSF---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECCE---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 48999999999643 59999999999999999999999999999999999986 379999999999853 456
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC--C---CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN--A---SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~---~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
..+|++++||+|+|.+|+.|++||+.++... . .++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 6788999999999999999999999875321 1 13445666777777655532 2234566899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEe---------CCEEE
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLN---------GGRIV 1270 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~---------~G~Iv 1270 (1303)
++||||++++|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+ ..||+|++|+ +|+|+
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 9999999999999999999999999999999999998765 48999999999876 5689999998 89999
Q ss_pred EecChHHHhhc
Q 000751 1271 EEGTHDSLLAK 1281 (1303)
Q Consensus 1271 e~Gt~~eLl~~ 1281 (1303)
+.|+++++.+.
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999999865
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=371.46 Aligned_cols=213 Identities=30% Similarity=0.517 Sum_probs=185.8
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++++|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999952 246999999999999999999999999999999999999999999999999998777778889999
Q ss_pred EEeccc--ccccHhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 389 LVTQEP--ALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 389 ~v~Q~~--~l~~~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
||+|++ .+|+.|++||+.++. ..+.+ ++.++++..++.+++.+ ....||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 999998 477889999998753 23332 34556666666544433 34589999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988753 799999999999985 6999999999999999999998764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=375.08 Aligned_cols=211 Identities=28% Similarity=0.438 Sum_probs=180.3
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHH----hc
Q 000751 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL----RS 385 (1303)
Q Consensus 310 ~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----~~ 385 (1303)
.++|++++|. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567888883 4569999999999999999999999999999999999999999999999999987765543 46
Q ss_pred ceEEEecccccc-cHhHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 386 QIGLVTQEPALL-SLSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 386 ~i~~v~Q~~~l~-~~ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
+|+|++|++.+| +.|++||+.++. ... ++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 799999999988 479999998752 112 234556666666655544433 4799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||||+++|+||||||||++||+.+.+.+.+.|.++. .|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998874 3799999999999875 5999999999999999999998754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=372.92 Aligned_cols=216 Identities=28% Similarity=0.431 Sum_probs=187.0
Q ss_pred cEEEEEEEEEcCCCC---CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCC-HHHH
Q 000751 308 NIEFRNVYFSYLSRP---EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK-LEWL 383 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~---~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~ 383 (1303)
-++++|++|+|++.. ++++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999996421 346999999999999999999999999999999999999999999999999987653 3557
Q ss_pred hcceEEEecccc--cccHhHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHH
Q 000751 384 RSQIGLVTQEPA--LLSLSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (1303)
Q Consensus 384 ~~~i~~v~Q~~~--l~~~ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqr 454 (1303)
++.|+||+|+|. ++..|+.||+.|+. ..+ ++++.++++.+++.++..+. ...||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHH
Confidence 889999999984 67779999999863 122 23456666666666555443 35899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccccCEEEEEeCceEeeccChHHHh
Q 000751 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 455 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998874 389999999999998889999999999999999999987
Q ss_pred hc
Q 000751 533 AT 534 (1303)
Q Consensus 533 ~~ 534 (1303)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 65
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=368.35 Aligned_cols=217 Identities=28% Similarity=0.455 Sum_probs=186.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCCCCHHH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLKLEW 382 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~~ 382 (1303)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.+.+...
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEEC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 489999999995 34699999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhcceEEEecccccc-cHhHHHHHhcCCC-----CC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 383 LRSQIGLVTQEPALL-SLSIRDNIAYGRD-----AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 383 ~~~~i~~v~Q~~~l~-~~ti~~ni~~~~~-----~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
+|+.|+||+|++.+| +.|++||+.++.. .. .+++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 899999999999755 6899999987531 11 234555566665543321 123344568999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999885 5999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=361.27 Aligned_cols=213 Identities=30% Similarity=0.482 Sum_probs=173.6
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH---HHhh
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL---RWLR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~---~~lR 1129 (1303)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999997431 1259999999999999999999999999999999999999999999999999988774 5788
Q ss_pred cceEEEccCC--ccC-cccHHHHHHcCCC----CCCHHHHHHHHHHhchHHHHHhCCCCcc-cccCCCCCCCChHHHHHH
Q 000751 1130 NHLGLVQQEP--IIF-STTIRENIIYARH----NASEAEVKEAARIANAHHFISSLPHGYD-THVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1130 ~~i~~VpQdp--~LF-~gTIreNl~~g~~----~~~~~ei~~al~~a~l~~~I~~lp~Gld-t~vge~G~~LSgGQrQRl 1201 (1303)
++++|+||+| .++ ..|++||+.++.. ...++...++. .+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 9999999999 344 4799999975421 11112111111 1222222 332 233445568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
+||||++.+|+||||||||++||+.+...+.+.|++..++ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999987553 689999999999887 69999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=359.33 Aligned_cols=202 Identities=26% Similarity=0.398 Sum_probs=177.1
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 47899999995 35799999999999999999999999999999999999999999999999988654 45678899
Q ss_pred EEecccccc-cHhHHHHHhcCC---CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC
Q 000751 389 LVTQEPALL-SLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (1303)
Q Consensus 389 ~v~Q~~~l~-~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~ 464 (1303)
||+|++.+| +.|++||+.++. ..+++++.++++..++.+...+ ....||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 579999998753 2345667777777777654433 3457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeecc
Q 000751 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 465 ~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g 526 (1303)
|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998865 5899999999999886 49999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=369.49 Aligned_cols=217 Identities=27% Similarity=0.406 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC--C---CCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~ 380 (1303)
-|+++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 589999999995 3469999999999999999999999999999999999997 3 58999999999863 445
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCC----CCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD----ATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~----~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+|+.|+||+|++.+|..|++||+.++.. ..++ ++.++++..++.+++. +.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 677889999999999998999999987631 1222 2334444555443321 234556778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++||||++++|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999876 5999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
..+
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 654
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=368.84 Aligned_cols=217 Identities=29% Similarity=0.415 Sum_probs=184.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecC--CCCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIK--NLKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~--~~~~ 380 (1303)
.|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. +.+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeC---CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 489999999995 34699999999999999999999999999999999999987 4999999999987 4556
Q ss_pred HHHhcceEEEeccccccc-HhHHHHHhcCC---CC--CH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChH
Q 000751 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGR---DA--TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~--~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgG 450 (1303)
..+|++|+||+|++.+|. .|+.||+.++. .. .. +++.++++..++.+++. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 677889999999999996 49999998752 11 22 23444555554433221 2234566789999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChH
Q 000751 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 451 qkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~ 529 (1303)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877899999999999876 59999999999999999999
Q ss_pred HHhhc
Q 000751 530 ELLAT 534 (1303)
Q Consensus 530 ~l~~~ 534 (1303)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=369.66 Aligned_cols=219 Identities=26% Similarity=0.404 Sum_probs=188.7
Q ss_pred CccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--C
Q 000751 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--L 378 (1303)
Q Consensus 306 ~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~ 378 (1303)
...|+++|++|+|+ ++++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|.++.. .
T Consensus 18 ~~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 34699999999994 3579999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhcceEEEecccccccHhHHHHHhcCC---CC-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChH
Q 000751 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (1303)
Q Consensus 379 ~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgG 450 (1303)
+...+|+.|+||+|++.+|..|++||+.++. .. + ++++.++++..++.+++. +..+..+..||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHH
Confidence 4566788999999999999899999999863 11 1 234455566666654432 3455677899999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChH
Q 000751 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 451 qkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~ 529 (1303)
||||++||||++++|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877899999999999875 59999999999999999999
Q ss_pred HHhhc
Q 000751 530 ELLAT 534 (1303)
Q Consensus 530 ~l~~~ 534 (1303)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 98654
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=369.17 Aligned_cols=218 Identities=26% Similarity=0.444 Sum_probs=186.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--CC
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LK 379 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~ 379 (1303)
..|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 3599999999995 3469999999999999999999999999999999999987 689999999999863 45
Q ss_pred HHHHhcceEEEecccccccHhHHHHHhcCCC---CC---HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 380 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~---~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
...+|+.|+||+|++.+|..|++||+.++.. .. ++++.++++.+++... .++........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDE-------CKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcch-------hhhhhCCCcccCCHHHHH
Confidence 6778889999999999998899999998642 11 2334455555554322 223345566789999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeC-----------ce
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDE-----------GR 521 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~-----------G~ 521 (1303)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999999999998877899999999999875 5999999996 67
Q ss_pred EeeccChHHHhhc
Q 000751 522 LFEMGTHDELLAT 534 (1303)
Q Consensus 522 i~~~g~~~~l~~~ 534 (1303)
+++.|+.+++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 8999999998653
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=366.44 Aligned_cols=218 Identities=25% Similarity=0.424 Sum_probs=185.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--CH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKLY--NL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1125 (1303)
.|+++|++++|++. ++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGEK---QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECCe---eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 58999999999642 499999999999999999999999999999999999875 799999999998653 44
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN--A-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++|+||++.+|+.|++||+.++... . + .+++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 5778999999999999999999999865311 1 1 2345566777766433321 22344568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+|||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEK 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999999999998765 489999999999875 499999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14270 233 IFLE 236 (251)
T ss_pred HhcC
Confidence 9754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=367.85 Aligned_cols=217 Identities=29% Similarity=0.475 Sum_probs=185.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEEC---CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 589999999995 34699999999999999999999999999999999999863 69999999999864 355
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CC-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+|+.|+||+|++.+|+.|++||+.++. .. . ++++.++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 66788999999999999999999999863 11 1 234455555555543332 234456678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 4999999999999999999988
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 233 ~~~ 235 (250)
T PRK14240 233 FTN 235 (250)
T ss_pred HhC
Confidence 643
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=362.09 Aligned_cols=208 Identities=25% Similarity=0.388 Sum_probs=177.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 57899999995 34699999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEeccccccc-HhHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
||+|++.++. .|++||+.++. ..+ ++++.++++..++.+.... ....||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADR-----------LVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999998886 59999998742 122 2345556666666544332 235799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHH
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 531 (1303)
++.+|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 7899999999998864 999999999999999987764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=365.65 Aligned_cols=218 Identities=26% Similarity=0.453 Sum_probs=185.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCC-CCCHH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLK-LYNLR 1126 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~-~~~~~ 1126 (1303)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| .+|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999974 2599999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HhhcceEEEccCCccCcccHHHHHHcCCCC--C-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHH
Q 000751 1127 WLRNHLGLVQQEPIIFSTTIRENIIYARHN--A-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp~LF~gTIreNl~~g~~~--~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQ 1199 (1303)
.+|+.++|+||+|.+|+.|++||+.++... . + ++++.++++.+++.+.+. ........+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 889999999999999999999999875321 1 1 123455566666544332 2233445689999999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHH
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSL 1278 (1303)
Q Consensus 1200 RlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eL 1278 (1303)
|++||||++.+|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999998865 4899999999998765 999999999999999999998
Q ss_pred hhc
Q 000751 1279 LAK 1281 (1303)
Q Consensus 1279 l~~ 1281 (1303)
..+
T Consensus 232 ~~~ 234 (249)
T PRK14253 232 FSN 234 (249)
T ss_pred HcC
Confidence 754
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=368.40 Aligned_cols=219 Identities=26% Similarity=0.419 Sum_probs=186.9
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CC
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKL--YN 1124 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~ 1124 (1303)
+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999964 2599999999999999999999999999999999999985 48999999999864 45
Q ss_pred HHHhhcceEEEccCCccCcccHHHHHHcCCCC---CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARHN---AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~---~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
...+|++++||||+|.+|+.|++||+.++... .+ ++.+.++++.+++++++.. ........|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 56788999999999999999999999864211 11 2345677777777554432 1234456899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEe-----CCEEEE
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLN-----GGRIVE 1271 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~-----~G~Ive 1271 (1303)
|||++|||||+++|++|||||||++||+.+...+.+.|++... ++|+|+|||+++.+. .||++++|+ +|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 9999999999999999999999999999999999999998755 589999999999875 599999998 599999
Q ss_pred ecChHHHhhc
Q 000751 1272 EGTHDSLLAK 1281 (1303)
Q Consensus 1272 ~Gt~~eLl~~ 1281 (1303)
.|+++++.+.
T Consensus 235 ~~~~~~~~~~ 244 (259)
T PRK14260 235 FGVTTQIFSN 244 (259)
T ss_pred eCCHHHHhcC
Confidence 9999999764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=360.76 Aligned_cols=212 Identities=27% Similarity=0.486 Sum_probs=185.0
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++ .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 28999999999999999999999999999999999999999999999999987654 368999
Q ss_pred EEccCCccCc-ccHHHHHHcCCCC--C----CHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARHN--A----SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~~--~----~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||++.+|+ .|++||+.++... . .++++.++++.+++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999995 7999999865321 1 1335667777777776655443 4799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
++++|++|+|||||++||+.+.+.+.+.+++...+ ++|+|++||++..+. .||+|++|++|++++.|+++++.+..
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999999986543 689999999999876 49999999999999999999998753
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=366.25 Aligned_cols=215 Identities=26% Similarity=0.401 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH-Hhcce
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 387 (1303)
|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 47899999995 346999999999999999999999999999999999999999999999999998776654 35679
Q ss_pred EEEecccccccH-hHHHHHhcCC---CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhcc
Q 000751 388 GLVTQEPALLSL-SIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (1303)
Q Consensus 388 ~~v~Q~~~l~~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~ 463 (1303)
+|++|++.+|.. |++||+.++. ....++..+ .+++.++.+ |++.........||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999875 9999998753 122222111 122334443 55555566677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 464 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 4789999999998765 599999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=383.00 Aligned_cols=213 Identities=25% Similarity=0.453 Sum_probs=183.5
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcc
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 386 (1303)
..|+++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 3599999999994 3469999999999999999999999999999999999999999999999999987664 4678
Q ss_pred eEEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
||||+|++.+|. .||+|||.|+. ..+. +++.+.++..++.++.. ....+||||||||+|||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 999999999996 69999999874 2232 23445555555544433 34457999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccc-cccCEEEEEeCceEeeccChHHHhhcC
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
|||+++|++|+||||||+||+.+...+.+.++++. .+.|+|+|||+++.+ ..||+|++|++|++++.|+++++..+.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999988887664 379999999999986 469999999999999999999998764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=370.53 Aligned_cols=215 Identities=26% Similarity=0.442 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCC---cEEEECCeecCCCCHHHHh
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL---GEVLLDGENIKNLKLEWLR 384 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~i~~~g~~~~~~~~~~~~ 384 (1303)
.|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999632 3469999999999999999999999999999999999999998 8999999999877777788
Q ss_pred cceEEEecccc--cccHhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 385 SQIGLVTQEPA--LLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 385 ~~i~~v~Q~~~--l~~~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
++|+||+|+|. +++.|++|||.++. ..+.+ ++.++++.+++.++... ...+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDS-----------EPANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHH
Confidence 89999999984 66889999999863 23332 35556666666554443 3468999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 799999999999988899999999999999999988865
Q ss_pred c
Q 000751 534 T 534 (1303)
Q Consensus 534 ~ 534 (1303)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=380.71 Aligned_cols=212 Identities=26% Similarity=0.407 Sum_probs=185.3
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----CHHHhh
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY----NLRWLR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~lR 1129 (1303)
|++ |++++|.+. .+ |+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++... +....|
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 999999632 23 99999999999999999999999999999999999999999999998753 244568
Q ss_pred cceEEEccCCccCc-ccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHh
Q 000751 1130 NHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAll 1208 (1303)
++++||+|++.+|+ .|++||+.++.....++++.++++..++.++..+.| .+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence 89999999999997 599999998754445567788888887766655443 489999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1209 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
++|++||||||||+||+.+.+.+.+.|++..++ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999987543 689999999998765 59999999999999999999998763
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=370.74 Aligned_cols=212 Identities=27% Similarity=0.433 Sum_probs=185.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.|
T Consensus 11 ~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 589999999995 34799999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEeccccccc-HhHHHHHhcCCC-----------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGRD-----------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~~-----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
+||+|++.++. .|+.||+.++.. ..++++.++++.+++.+++... ..+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 99999987664 599999997631 1123456666666665444333 347999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
+||||++.+|+||||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999998874 3799999999999985 59999999999999999998876
Q ss_pred h
Q 000751 533 A 533 (1303)
Q Consensus 533 ~ 533 (1303)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=365.49 Aligned_cols=214 Identities=24% Similarity=0.329 Sum_probs=176.6
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcc--ccCCccEEEECCeeCCCCCHHHh-hc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF--YDPVAGQVLLDGRDLKLYNLRWL-RN 1130 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl--~~~~~G~I~idG~di~~~~~~~l-R~ 1130 (1303)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999964 2599999999999999999999999999999999999 47999999999999998887654 45
Q ss_pred ceEEEccCCccCcc-cHHHHHHcCCCC---------CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChH
Q 000751 1131 HLGLVQQEPIIFST-TIRENIIYARHN---------AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196 (1303)
Q Consensus 1131 ~i~~VpQdp~LF~g-TIreNl~~g~~~---------~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgG 1196 (1303)
.++||||+|.+|++ |++||+.+.... .+ ++++.++++..++.+. -.+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE------FLNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh------hcccccc---cCcCHH
Confidence 69999999999986 899999653210 11 1233444444444211 1122221 249999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh--cCEEEEEeCCEEEEecC
Q 000751 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH--VDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1197 QrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~--~D~Iivl~~G~Ive~Gt 1274 (1303)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++..++++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875556899999999999876 79999999999999999
Q ss_pred hHHHh
Q 000751 1275 HDSLL 1279 (1303)
Q Consensus 1275 ~~eLl 1279 (1303)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=367.28 Aligned_cols=220 Identities=25% Similarity=0.443 Sum_probs=187.4
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCC--CC
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV-----AGQVLLDGRDLKL--YN 1124 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~-----~G~I~idG~di~~--~~ 1124 (1303)
+.|+++||+++|++. .+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCCe---eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 469999999999643 4999999999999999999999999999999999999985 8999999999853 35
Q ss_pred HHHhhcceEEEccCCccCcccHHHHHHcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARH--NA-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
...+|+.++|+||++.+|+.|++||+.++.. .. + ++.+.++++.+++.+++.. ..+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999986421 11 1 2345667777776554432 2344556899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEeC-----CEEE
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLNG-----GRIV 1270 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~~-----G~Iv 1270 (1303)
|||++||||++++|+||||||||++||+++...+.+.|++... .++|+|+|||+++.+. .||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 9999999999999999999999999999999999999998643 3699999999999875 5899999999 9999
Q ss_pred EecChHHHhhc
Q 000751 1271 EEGTHDSLLAK 1281 (1303)
Q Consensus 1271 e~Gt~~eLl~~ 1281 (1303)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999765
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=370.15 Aligned_cols=219 Identities=29% Similarity=0.473 Sum_probs=188.2
Q ss_pred CccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCC--C
Q 000751 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--L 378 (1303)
Q Consensus 306 ~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~ 378 (1303)
...|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEEC---CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 34699999999995 34699999999999999999999999999999999999984 89999999999864 3
Q ss_pred CHHHHhcceEEEecccccccHhHHHHHhcCC---CC-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChH
Q 000751 379 KLEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (1303)
Q Consensus 379 ~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgG 450 (1303)
+...+|+.++|++|++.+|..|++||+.++. .. . ++++.++++.+++.+++. +..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 4567789999999999999889999998752 11 1 233555566665544332 2445677899999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChH
Q 000751 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 451 qkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~ 529 (1303)
||||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999998877899999999999875 59999999999999999999
Q ss_pred HHhhc
Q 000751 530 ELLAT 534 (1303)
Q Consensus 530 ~l~~~ 534 (1303)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 88654
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=366.28 Aligned_cols=214 Identities=24% Similarity=0.383 Sum_probs=184.6
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCC--------ccEEEECCeeCCCCCH
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV--------AGQVLLDGRDLKLYNL 1125 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~--------~G~I~idG~di~~~~~ 1125 (1303)
|+++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECCE---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 7899999999643 5999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHhhcceEEEccCCc-cCcccHHHHHHcCCC-C------CC---HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCC
Q 000751 1126 RWLRNHLGLVQQEPI-IFSTTIRENIIYARH-N------AS---EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~-LF~gTIreNl~~g~~-~------~~---~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1194 (1303)
..+|+.++||||++. +|+.|++||+.++.. . .+ ++.++++++..++. +.++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 888889999999986 578899999987531 1 11 12345555555543 33444556899
Q ss_pred hHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEE
Q 000751 1195 PGQKQRIAIARVVL---------KNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVV 1263 (1303)
Q Consensus 1195 gGQrQRlaLARAll---------r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iiv 1263 (1303)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999999999987553 689999999999885 6999999
Q ss_pred EeCCEEEEecChHHHhhc
Q 000751 1264 LNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1264 l~~G~Ive~Gt~~eLl~~ 1281 (1303)
|++|+|++.|+++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 228 LADGAIVAHGAPADVLTP 245 (272)
T ss_pred EECCeEEEecCHHHHcCH
Confidence 999999999999998763
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=375.65 Aligned_cols=212 Identities=27% Similarity=0.441 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 599999999995 357999999999999999999999999999999999999999999999999997654 4578899
Q ss_pred EEEeccccccc-HhHHHHHhcC-C--CCCHHH----HHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYG-R--DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~-~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
|||||++.++. .|++||+.+. . ..+..+ +.++++..++ ++..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL-------ENKADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 7999999853 2 223222 2333333333 23334444 479999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhhc
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999998875 48999999999999865 999999999999999999998653
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=374.29 Aligned_cols=212 Identities=22% Similarity=0.410 Sum_probs=182.9
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 359999999999999999999999999999999999999999999999999977 4467889999
Q ss_pred EEccCCccCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||+|.+|++ |++||+.+... ..+ .+++.++++..++. ........+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-----------PEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 99999999976 99999975321 112 23344444444443 33344456899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|+++|++|||||||++||+.+.+.+++.|++... ++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998754 6999999999998765 999999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=375.98 Aligned_cols=200 Identities=24% Similarity=0.392 Sum_probs=173.5
Q ss_pred ceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceEEEccCCccCcc-cHHH
Q 000751 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRE 1148 (1303)
Q Consensus 1070 ~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~~VpQdp~LF~g-TIre 1148 (1303)
++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++++||||++.+|+. |++|
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 59999999999999999999999999999999999999999999999999876 345678999999999999976 9999
Q ss_pred HHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 000751 1149 NIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222 (1303)
Q Consensus 1149 Nl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSa 1222 (1303)
|+.+... ..+ ++++.++++..++.+.. +. ...+||||||||++|||||+++|++|||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DR----PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CC----chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 112 23455666666664332 22 2348999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1223 IESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1223 LD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
||+.+.+.+++.|++...+++|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999987655789999999999886 5999999999999999999999765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=365.96 Aligned_cols=224 Identities=25% Similarity=0.405 Sum_probs=186.7
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCC---ccEEEECCeeCCCC-----C
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV---AGQVLLDGRDLKLY-----N 1124 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~---~G~I~idG~di~~~-----~ 1124 (1303)
-|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQH---QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCCe---EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 48999999999643 5999999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHhhcceEEEccCCccCc-ccHHHHHHcCCCC--------------CCHHHHHHHHHHhchHHHHHhCCCCcccccCCC
Q 000751 1125 LRWLRNHLGLVQQEPIIFS-TTIRENIIYARHN--------------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMR 1189 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~-gTIreNl~~g~~~--------------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~ 1189 (1303)
...+|++++|+||++.+|+ .|++||+.++... ..++++.++++..++.+.+.. .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------R 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------C
Confidence 4567889999999999887 5999999875321 012345666666666544432 3
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhH-hhcCEEEEEeCC
Q 000751 1190 GVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMM-RHVDNIVVLNGG 1267 (1303)
Q Consensus 1190 G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti-~~~D~Iivl~~G 1267 (1303)
..+||||||||++||||++.+|++|||||||++||.++.+.+.+.|++... +++|+|++||+++.+ ..||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 347999999999999999999999999999999999999999999998753 268999999999975 569999999999
Q ss_pred EEEEecChHHHhhcCchhHHHHhhh
Q 000751 1268 RIVEEGTHDSLLAKNGLYVRLMQPH 1292 (1303)
Q Consensus 1268 ~Ive~Gt~~eLl~~~g~y~~l~~~~ 1292 (1303)
++++.|+++++ ......+++...
T Consensus 230 ~i~~~g~~~~~--~~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF--DNERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh--ccHHHHHHHhhh
Confidence 99999999997 233455555433
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=364.78 Aligned_cols=218 Identities=26% Similarity=0.454 Sum_probs=187.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999964 259999999999999999999999999999999999875 389999999999875 346
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCC--C-CC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARH--N-AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~-~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++|+||+|.+|++|++||+.++.. . .+ ++++.++++.+++.+++..+ + ...+..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---L----DKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---H----hCCcccCCHHHH
Confidence 678999999999999999999999986531 1 12 23456677787876655422 2 344568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999999999998754 6999999999987655 89999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 9765
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=347.70 Aligned_cols=178 Identities=32% Similarity=0.532 Sum_probs=165.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999632 24699999999999999999999999999999999999999999999999988766 566788999
Q ss_pred EEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEE
Q 000751 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (1303)
Q Consensus 389 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~il 468 (1303)
||+|++++|+.|++||+ ...||||||||++||||++++|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 4579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccccCEEEEEeCceEeecc
Q 000751 469 LLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 469 ilDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g 526 (1303)
||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999998887789999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=360.55 Aligned_cols=206 Identities=26% Similarity=0.422 Sum_probs=174.5
Q ss_pred EEEEEEEEEcCCCCC-CCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
|+++||+++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999963211 169999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
+||+|++.+|. .|++||+.+.. .... +++.++++..++ +.........||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM-----------EELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------HHHHhhhhhhcCHHHHHHHHHHH
Confidence 99999999987 59999998642 1222 233444444444 33344566789999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeecc
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g 526 (1303)
|++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998874 5899999999999876 49999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=365.85 Aligned_cols=217 Identities=29% Similarity=0.504 Sum_probs=185.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 589999999995 346999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCC---CC-H----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT-L----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~---~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+|+.++||+|++.+|+.|++||+.++.. .. . +.+.++++..++.+++ .+.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 677889999999999998999999998631 11 1 2233344444443332 2335667789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888778999999999999865 899999999999999999988
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=367.80 Aligned_cols=217 Identities=25% Similarity=0.399 Sum_probs=183.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccC--CC---CCcEEEECCeecCCC--CH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DP---TLGEVLLDGENIKNL--KL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~---~~G~i~~~g~~~~~~--~~ 380 (1303)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 489999999995 346999999999999999999999999999999999995 46 599999999998643 34
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CC-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+|+.|+||+|++.+|+.|++||+.++. .. . ++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 56788999999999999999999998752 11 1 123344455555433222 234566778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 754
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=381.77 Aligned_cols=199 Identities=30% Similarity=0.461 Sum_probs=173.7
Q ss_pred CcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHH----hcceEEEeccccccc-H
Q 000751 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL----RSQIGLVTQEPALLS-L 399 (1303)
Q Consensus 325 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~-~ 399 (1303)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988876554 468999999999985 6
Q ss_pred hHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeC
Q 000751 400 SIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472 (1303)
Q Consensus 400 ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe 472 (1303)
|++||+.++. ..+ ++++.++++..++.++..+. ..+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~-----------~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY-----------PDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999863 122 23455566666665554443 35899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 473 VTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 473 ~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||++||+.+.+.+++.|.++. .++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998874 4899999999999875 5999999999999999999998765
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=368.18 Aligned_cols=217 Identities=28% Similarity=0.451 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCCC--CH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 380 (1303)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 599999999995 34699999999999999999999999999999999999985 799999999998643 34
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
..+++.++||+|++.+|..|++||+.++. ..+.+ ++.++++.+++.+++ ..........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 45778899999999999999999998753 22222 344455555543221 12234556789999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHh
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998877899999999999885 59999999999999999999986
Q ss_pred hc
Q 000751 533 AT 534 (1303)
Q Consensus 533 ~~ 534 (1303)
+.
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 54
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=367.17 Aligned_cols=217 Identities=29% Similarity=0.464 Sum_probs=184.8
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhcc---CCC--CCcEEEECCeecCCC--CH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF---YDP--TLGEVLLDGENIKNL--KL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~---~~~--~~G~i~~~g~~~~~~--~~ 380 (1303)
.|+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 489999999995 34699999999999999999999999999999999997 454 589999999998753 34
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CC-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+++.|+||+|++.+|..|++||+.++. .. . ++++.++++.+++.+++. +.....+..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 56788999999999999899999998753 11 1 223455555555543332 334566778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999885 5999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
.++
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 754
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=375.48 Aligned_cols=228 Identities=22% Similarity=0.303 Sum_probs=186.2
Q ss_pred cEEEEeeEEECCCC-CCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc----CCccEEEECCeeCCCCCHHH
Q 000751 1053 SIELKNVDFCYPSR-PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD----PVAGQVLLDGRDLKLYNLRW 1127 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~-~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~----~~~G~I~idG~di~~~~~~~ 1127 (1303)
-|+++|++++|+.+ ....+|+||||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999642 12369999999999999999999999999999999999986 58999999999999888765
Q ss_pred hh----cceEEEccCCc--cCc-ccHHHHHHcCC------C----C--CCHHHHHHHHHHhchHHHHHhCCCCcccccCC
Q 000751 1128 LR----NHLGLVQQEPI--IFS-TTIRENIIYAR------H----N--ASEAEVKEAARIANAHHFISSLPHGYDTHVGM 1188 (1303)
Q Consensus 1128 lR----~~i~~VpQdp~--LF~-gTIreNl~~g~------~----~--~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge 1188 (1303)
++ ++|+||+|+|. +++ .||.+|+.... . . ...+++.++++.+++.+.-. ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 53 47999999996 333 58999986321 0 0 01235667777777743210 1122
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeC
Q 000751 1189 RGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNG 1266 (1303)
Q Consensus 1189 ~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~ 1266 (1303)
....||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++..+ +.|+|+|||+++.+. .||+|+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 33489999999999999999999999999999999999999999999987543 689999999999985 5999999999
Q ss_pred CEEEEecChHHHhhc-CchhHHH
Q 000751 1267 GRIVEEGTHDSLLAK-NGLYVRL 1288 (1303)
Q Consensus 1267 G~Ive~Gt~~eLl~~-~g~y~~l 1288 (1303)
|+|+|.|+++++.+. ...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 999999999999875 3456553
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=368.80 Aligned_cols=215 Identities=30% Similarity=0.440 Sum_probs=185.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++|
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999632 24699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecccc--cccHhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHH
Q 000751 388 GLVTQEPA--LLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 388 ~~v~Q~~~--l~~~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialA 458 (1303)
+||+|+|. ++..|+++|+.++. .... +++.++++..++.++ ......+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHH
Confidence 99999985 45678999998863 1222 234444555544332 2344568999999999999
Q ss_pred HhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccccCEEEEEeCceEeeccChHHHhhc
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 459 Ral~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 7899999999998878999999999999999999988664
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=366.54 Aligned_cols=218 Identities=28% Similarity=0.463 Sum_probs=183.9
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECCE---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 48999999999743 499999999999999999999999999999999999974 69999999999853 455
Q ss_pred HHhhcceEEEccCCccCc-ccHHHHHHcCCC---CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1126 RWLRNHLGLVQQEPIIFS-TTIRENIIYARH---NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~-gTIreNl~~g~~---~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
..+|+.++|++|++.+|+ .|++||+.++.. ..+ ++.+.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999997 599999976421 111 234455666666643321 22234456899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEe------CCEEE
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLN------GGRIV 1270 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~------~G~Iv 1270 (1303)
|||++||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|+ +|+|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 9999999999999999999999999999999999999998754 589999999999875 699999997 89999
Q ss_pred EecChHHHhhc
Q 000751 1271 EEGTHDSLLAK 1281 (1303)
Q Consensus 1271 e~Gt~~eLl~~ 1281 (1303)
+.|++++++..
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999999764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=369.37 Aligned_cols=217 Identities=26% Similarity=0.407 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++|++|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 589999999995 3569999999999999999999999999999999999864 789999999999864 344
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~---~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..++++|+|++|++.+|.+|++||+.++.. . . ++.+.++++.+++.+.+ .........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCHHHH
Confidence 567889999999999999999999987521 1 1 12344455555443222 1233456778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999988
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=359.99 Aligned_cols=204 Identities=28% Similarity=0.480 Sum_probs=172.3
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH---Hh
Q 000751 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (1303)
Q Consensus 309 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~~ 384 (1303)
|+++||+++|++.. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 246999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -cceEEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 385 -SQIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 385 -~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
+.|+||+|++.+|. .|++||+.++. ..+. +++.++++.. |++.........||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV-----------GLEHRINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHH
Confidence 67999999999885 69999998742 2222 2233333433 344444455578999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccccCEEEEEeCceEe
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLF 523 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~ 523 (1303)
+||||++++|++|||||||++||+++...+.+.|+++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998875 379999999999998889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=367.84 Aligned_cols=217 Identities=30% Similarity=0.472 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++|++|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 489999999995 3479999999999999999999999999999999999997 479999999999854 344
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~---~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+++.|+||+|++.+|+.|++||+.++.. . . ++++.++++..+++... .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 567889999999999999999999987631 1 1 12344455555543211 1123456678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998764 999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=370.32 Aligned_cols=219 Identities=26% Similarity=0.458 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCC----CHHH
Q 000751 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEW 382 (1303)
Q Consensus 309 i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~ 382 (1303)
|+++||+|+|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996321 14699999999999999999999999999999999999999999999999998754 3466
Q ss_pred HhcceEEEeccc--ccccHhHHHHHhcCC---CCCHHHHHHHHHHhcchHHHHhcccccC-ccccCCCCCCChHHHHHHH
Q 000751 383 LRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 383 ~~~~i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~vg~~g~~LSgGqkqria 456 (1303)
+|+.|+|++|++ .+|+.|++||+.++. ..+.++..+.+ .+.++.+ |++ .........||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 678899999998753 23333322211 1122222 333 2234556789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|||||+.+|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998875 4799999999999885 5999999999999999999888654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=359.77 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=180.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|
T Consensus 7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 489999999995 35799999999999999999999999999999999999999999999999999888887888899
Q ss_pred EEEecccccccHhHHHHHhcCCC-----CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhc
Q 000751 388 GLVTQEPALLSLSIRDNIAYGRD-----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (1303)
Q Consensus 388 ~~v~Q~~~l~~~ti~~ni~~~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~ 462 (1303)
+|++|++.+|+.|++||+.++.. ..++++.+.++..++. ++.......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999987421 1122233333333332 23445667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccccCEEEEEe-CceEeeccChH
Q 000751 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMD-EGRLFEMGTHD 529 (1303)
Q Consensus 463 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~-~G~i~~~g~~~ 529 (1303)
++|+++||||||++||+.+.+.+.+.++++. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999998874 3789999999999998899999995 67777889885
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=364.46 Aligned_cols=218 Identities=28% Similarity=0.441 Sum_probs=182.2
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCC-----ccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPV-----AGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~-----~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 35999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHhhcceEEEccCCccCcc-cHHHHHHcCCC--CC-CHHHHHH----HHHHhchHHHHHhCCCCcccccCCCCCCCChHH
Q 000751 1126 RWLRNHLGLVQQEPIIFST-TIRENIIYARH--NA-SEAEVKE----AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQ 1197 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~g-TIreNl~~g~~--~~-~~~ei~~----al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQ 1197 (1303)
..+|+.++|+||+|.+|+. |++||+.++.. .. .+++..+ .++..++++.+ ++.+++. ..+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHH
Confidence 5778999999999999984 99999986432 11 2333322 23334433222 2233443 45899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHhh-cCEEEEEeCCEEEEecChH
Q 000751 1198 KQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHD 1276 (1303)
Q Consensus 1198 rQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~ 1276 (1303)
|||++||||++++|+||||||||++||+.+...+.+.|++... ++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999998754 5999999999998875 9999999999999999999
Q ss_pred HHhhc
Q 000751 1277 SLLAK 1281 (1303)
Q Consensus 1277 eLl~~ 1281 (1303)
+++..
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 99875
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=354.41 Aligned_cols=203 Identities=28% Similarity=0.485 Sum_probs=177.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
++++||+++|+. .++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+ .+|++++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEccCCccCcc-cHHHHHHcCC-CC-----CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFST-TIRENIIYAR-HN-----ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~-~~-----~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
||||+|.+|.+ |++||+.++. +. ..++++.++++..++.+...+.|. +||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHH
Confidence 99999999975 9999997642 11 124467778888888777666553 799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecC
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt 1274 (1303)
++++|+|+||||||++||+++.+.+.+.|++..++ ++|+|+|||+++.+. .||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999987543 689999999999875 599999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=369.54 Aligned_cols=215 Identities=29% Similarity=0.495 Sum_probs=188.7
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcce
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++||+.+|.. ...+|+||||+|++||.+|++||||||||||+++|.|++.|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 12599999999999999999999999999999999999999999999999988765 77889999
Q ss_pred EEEccCCccCcc-cHHHHHHcCCC------CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHH
Q 000751 1133 GLVQQEPIIFST-TIRENIIYARH------NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~VpQdp~LF~g-TIreNl~~g~~------~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLAR 1205 (1303)
|||||+|.+++. |++|||.|... ...++.+.+.++..++.+.- +.. ...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKK----VRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccc----hhhcCHHHHHHHHHHH
Confidence 999999998875 99999976421 11245788888888875421 222 3479999999999999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCC-cEEEEEecCchhHhh-cCEEEEEeCCEEEEecChHHHhhc
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGN-KTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1206 Allr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~-~TvI~IaHrl~ti~~-~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
||+.+|++|||||||++||+.+...+++.|+++..++ +||++.||.++.+.. ||+|++|++|+++..|+++++.+.
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999987765 799999999998877 999999999999999999998765
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=360.26 Aligned_cols=215 Identities=27% Similarity=0.424 Sum_probs=171.1
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCCHHHhh
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD---PVAGQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~lR 1129 (1303)
++|+||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 2469999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEccCCccCcc-cHHHHHHcCCCCCCHHHHHHHHHHhchHH-HHHhCCCCcccccCCCCCCCChHHHHHHHHHHHH
Q 000751 1130 NHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHH-FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVV 1207 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~g-TIreNl~~g~~~~~~~ei~~al~~a~l~~-~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAl 1207 (1303)
++++|+||++.+|++ |++||+.++..........+.......++ .++.+ +++.........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999987 99999986421100000000000000111 12211 222223344568999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCc--hhHhhcCEEEEEeCCEEEEec
Q 000751 1208 LKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRA--AMMRHVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1208 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl--~ti~~~D~Iivl~~G~Ive~G 1273 (1303)
+++|++|||||||++||+.+.+.+.+.+++....++|+|++||++ .....||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998755568999999998 356779999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=364.05 Aligned_cols=216 Identities=25% Similarity=0.461 Sum_probs=181.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCC--CHHHHhcc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL--KLEWLRSQ 386 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~ 386 (1303)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++++.
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 68999999995 34699999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eEEEeccccccc-HhHHHHHhcCC----CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhh
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal 461 (1303)
++|++|++.++. .|++||+.++. ..+.++..+. +.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQ-----ARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998885 69999998753 1222221111 12223332 444444555678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 462 ~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
+++|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 4899999999999986 4999999999999999999888654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=379.11 Aligned_cols=217 Identities=25% Similarity=0.368 Sum_probs=183.4
Q ss_pred cEEEEEEEEEcCCCC----------CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCC
Q 000751 308 NIEFRNVYFSYLSRP----------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN 377 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~----------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~ 377 (1303)
-++++|++++|+... ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhcceEEEeccc--ccc-cHhHHHHHhcCC-----CCCHHHH----HHHHHHhcchHHHHhcccccCccccC
Q 000751 378 LKLEW---LRSQIGLVTQEP--ALL-SLSIRDNIAYGR-----DATLDQI----EEAAKIAHAHTFISSLEKGYETQVGR 442 (1303)
Q Consensus 378 ~~~~~---~~~~i~~v~Q~~--~l~-~~ti~~ni~~~~-----~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~vg~ 442 (1303)
++... +|++|+||+|+| .|+ ..||.|||.++. ..+.++. .++++..++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 87544 578899999998 466 589999997531 2343333 33444444421 12344
Q ss_pred CCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeC
Q 000751 443 AGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDE 519 (1303)
Q Consensus 443 ~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~ 519 (1303)
....||||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5568999999999999999999999999999999999999999999988753 8999999999999875 999999999
Q ss_pred ceEeeccChHHHhhc
Q 000751 520 GRLFEMGTHDELLAT 534 (1303)
Q Consensus 520 G~i~~~g~~~~l~~~ 534 (1303)
|+|++.|+.+++.++
T Consensus 238 G~ive~g~~~~i~~~ 252 (331)
T PRK15079 238 GHAVELGTYDEVYHN 252 (331)
T ss_pred CEEEEEcCHHHHHcC
Confidence 999999999999865
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=367.32 Aligned_cols=211 Identities=24% Similarity=0.388 Sum_probs=183.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 78999999995 357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecccccccH-hHHHHHhcCC-CC----------CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 389 LVTQEPALLSL-SIRDNIAYGR-DA----------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 389 ~v~Q~~~l~~~-ti~~ni~~~~-~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
|++|++.++.+ |+.||+.++. .. .++++.++++..++.+. .......||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999988865 9999999863 10 12234555555555433 23445689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
||||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+.+++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998875 4899999999999876 599999999999999999988864
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=368.93 Aligned_cols=216 Identities=25% Similarity=0.431 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCC----CHH
Q 000751 308 NIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLE 381 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~ 381 (1303)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 24699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhcceEEEeccc--ccccHhHHHHHhcCC---CCCHHH----HHHHHHHhcchHHHHhcccccC-ccccCCCCCCChHH
Q 000751 382 WLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQ 451 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~-t~vg~~g~~LSgGq 451 (1303)
..++.|+||+|+| .+|..|++|||.++. ..+.++ +.++++.+ |++ .........|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-----------GLSEDLISKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCChhHhhCCcccCCHHH
Confidence 6778999999998 577889999998753 233322 23333333 343 22345567899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChH
Q 000751 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 452 kqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~ 529 (1303)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +|.|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998875 5899999999999875 59999999999999999999
Q ss_pred HHhhc
Q 000751 530 ELLAT 534 (1303)
Q Consensus 530 ~l~~~ 534 (1303)
++...
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 88653
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=360.48 Aligned_cols=204 Identities=30% Similarity=0.441 Sum_probs=172.6
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 309 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
|+++|++++|++.. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999995311 1479999999999999999999999999999999999999999999999998863 36789
Q ss_pred EEEeccccccc-HhHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
+||+|++.+|. .|++||+.++. ... .+++.++++..++.+++. ....+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99999999887 79999998753 111 234455555555544433 334579999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEe--CceEeeccCh
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMD--EGRLFEMGTH 528 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~--~G~i~~~g~~ 528 (1303)
||+++|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999998873 3799999999999875 599999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=371.78 Aligned_cols=219 Identities=28% Similarity=0.487 Sum_probs=186.8
Q ss_pred ccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCCC--C
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKLY--N 1124 (1303)
Q Consensus 1052 g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~--~ 1124 (1303)
..|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 44 ~~l~i~nl~~~~~~~---~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGDD---HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCCe---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 369999999999753 59999999999999999999999999999999999986 6899999999998753 4
Q ss_pred HHHhhcceEEEccCCccCcccHHHHHHcCCCC-------------------CCHHHHHHHHHHhchHHHHHhCCCCcccc
Q 000751 1125 LRWLRNHLGLVQQEPIIFSTTIRENIIYARHN-------------------ASEAEVKEAARIANAHHFISSLPHGYDTH 1185 (1303)
Q Consensus 1125 ~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~-------------------~~~~ei~~al~~a~l~~~I~~lp~Gldt~ 1185 (1303)
...+|++++||||++.+|++|++||+.++... ..++++.++++.+++.+ ++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHH
Confidence 56788999999999999999999999875210 01234555666655533 33344
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEE-EE
Q 000751 1186 VGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNI-VV 1263 (1303)
Q Consensus 1186 vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~I-iv 1263 (1303)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+| ++
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEE
Confidence 5566779999999999999999999999999999999999999999999998865 489999999999875 59997 56
Q ss_pred EeCCEEEEecChHHHhhc
Q 000751 1264 LNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1264 l~~G~Ive~Gt~~eLl~~ 1281 (1303)
|++|++++.|+++++.+.
T Consensus 273 l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 273 LTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ecCCEEEEeCCHHHHHhC
Confidence 799999999999999764
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=366.40 Aligned_cols=220 Identities=26% Similarity=0.416 Sum_probs=188.4
Q ss_pred cccEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCC----
Q 000751 1051 YGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLK---- 1121 (1303)
Q Consensus 1051 ~g~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~---- 1121 (1303)
.+.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 3679999999999743 599999999999999999999999999999999999875 7999999998874
Q ss_pred CCCHHHhhcceEEEccCCccCcccHHHHHHcCCC--C-----CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCC
Q 000751 1122 LYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARH--N-----ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLT 1194 (1303)
Q Consensus 1122 ~~~~~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~-----~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LS 1194 (1303)
..+...+|++++|+||+|.+|++|++||+.++.. . ..++++.++++.+++.+.+ ..........||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCC
Confidence 3345678899999999999999999999986521 1 1135566777777664333 233445566899
Q ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1195 PGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1195 gGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
||||||++||||++++|++|||||||++||+.+.+.+.+.|++... ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999998755 589999999999885 59999999999999999
Q ss_pred ChHHHhhc
Q 000751 1274 THDSLLAK 1281 (1303)
Q Consensus 1274 t~~eLl~~ 1281 (1303)
+++++...
T Consensus 243 ~~~~~~~~ 250 (265)
T PRK14252 243 ATDTIFIK 250 (265)
T ss_pred CHHHHHhC
Confidence 99999754
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=366.18 Aligned_cols=217 Identities=26% Similarity=0.436 Sum_probs=186.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecC--CCCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIK--NLKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~--~~~~ 380 (1303)
.|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++. ..+.
T Consensus 10 ~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 489999999995 3469999999999999999999999999999999999986 47999999999885 3455
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCC---CC---HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---AT---LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~---~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqr 454 (1303)
..++++|+||+|++.+|+.|++||+.++.. .. ++++.++++.+++.+++.. .....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 677889999999999998899999998641 11 2344555666666544432 2455677899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEe---------CceEee
Q 000751 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMD---------EGRLFE 524 (1303)
Q Consensus 455 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~---------~G~i~~ 524 (1303)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877899999999999876 599999998 899999
Q ss_pred ccChHHHhhc
Q 000751 525 MGTHDELLAT 534 (1303)
Q Consensus 525 ~g~~~~l~~~ 534 (1303)
.|+++++.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999998754
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=369.13 Aligned_cols=213 Identities=23% Similarity=0.352 Sum_probs=181.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHH---HHh
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLR 384 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~~ 384 (1303)
-|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 489999999995 35699999999999999999999999999999999999999999999999998876543 357
Q ss_pred cceEEEecccccccH-hHHHHHhcCC----CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 385 SQIGLVTQEPALLSL-SIRDNIAYGR----DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~~-ti~~ni~~~~----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
++|+|++|++.+|.. |+.||+.++. ..+.+ ++.+.++..++ +.........||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGL-----------RGAAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHH
Confidence 789999999999875 9999998752 12222 23333343333 3233344568999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
+|||||+++|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988753 7999999999998865 9999999999999999999987
Q ss_pred hc
Q 000751 533 AT 534 (1303)
Q Consensus 533 ~~ 534 (1303)
+.
T Consensus 233 ~~ 234 (269)
T PRK11831 233 AN 234 (269)
T ss_pred cC
Confidence 64
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=366.66 Aligned_cols=223 Identities=26% Similarity=0.424 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCC------CCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH
Q 000751 309 IEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382 (1303)
Q Consensus 309 i~~~~v~f~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~ 382 (1303)
|+++||+|+|++. +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEEecccc--cc-cHhHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHHhcccccC-ccccCCCCCC
Q 000751 383 ---LRSQIGLVTQEPA--LL-SLSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLAL 447 (1303)
Q Consensus 383 ---~~~~i~~v~Q~~~--l~-~~ti~~ni~~~~----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~-t~vg~~g~~L 447 (1303)
+|+.|+||+|++. ++ ..|++||+.++. .... +++.++++.. |++ ......+..|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~L 151 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMV-----------GLRSEDADKLPRQL 151 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCChhhhhCChhhC
Confidence 6778999999983 44 479999997542 1221 2233333333 343 2345567789
Q ss_pred ChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEee
Q 000751 448 TEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFE 524 (1303)
Q Consensus 448 SgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~ 524 (1303)
|||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999988753 899999999999987 599999999999999
Q ss_pred ccChHHHhhc-ChhHHHHH
Q 000751 525 MGTHDELLAT-GDLYAELL 542 (1303)
Q Consensus 525 ~g~~~~l~~~-~~~~~~~~ 542 (1303)
.|+++++... ++.++.+.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999863 34454443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=358.49 Aligned_cols=202 Identities=27% Similarity=0.492 Sum_probs=172.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEEC---CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 47899999995 34799999999999999999999999999999999999999999999999998765543 46899
Q ss_pred EEeccccccc-HhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
||+|++.+|. .|++||+.++. ....+ ++.++++..++.+. .......||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHHH
Confidence 9999999885 69999998762 12222 33444454444433 334456899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccc-cCEEEEEeCceEeecc
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g 526 (1303)
++++|+++||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998875 37999999999998765 9999999999999865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=362.61 Aligned_cols=217 Identities=24% Similarity=0.350 Sum_probs=181.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH-Hhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 386 (1303)
-|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 489999999995 357999999999999999999999999999999999999999999999999998877644 6788
Q ss_pred eEEEeccccccc-HhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~ 464 (1303)
++|++|++.+|. .|++||+.++. ..+.++..+.++ +.++.++.. +.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~l~~~~~l-~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRL-HERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHH-----HHHHHHHHH-HHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999987 59999999864 222222222211 122222211 1122345668999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 465 PSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 465 ~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
|+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998874 5899999999998764 599999999999999999999864
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=365.71 Aligned_cols=212 Identities=26% Similarity=0.453 Sum_probs=180.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCC---------
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--------- 379 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--------- 379 (1303)
|+++||+|+|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeC---CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 57899999995 347999999999999999999999999999999999999999999999999987543
Q ss_pred ----HHHHhcceEEEeccccccc-HhHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCC
Q 000751 380 ----LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (1303)
Q Consensus 380 ----~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~ 446 (1303)
...+++.|+||+|++.+|. .|+.||+.++. .... +++.++++..+ ++.........
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG-----------LADKADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhHhhcChhh
Confidence 2467889999999998885 89999998752 1222 22333444443 33344455678
Q ss_pred CChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEe
Q 000751 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLF 523 (1303)
Q Consensus 447 LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~ 523 (1303)
||||||||++|||||+++|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 799999999999985 59999999999999
Q ss_pred eccChHHHhhc
Q 000751 524 EMGTHDELLAT 534 (1303)
Q Consensus 524 ~~g~~~~l~~~ 534 (1303)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999998654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=362.74 Aligned_cols=211 Identities=28% Similarity=0.454 Sum_probs=173.7
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH---HHHh
Q 000751 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLR 384 (1303)
Q Consensus 309 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~~ 384 (1303)
|+++||+|+|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999995321 1269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cceEEEecccc--cc-cHhHHHHHhcCC-----CCCHHHHHHHHHHhcchHHHHhcccccC-ccccCCCCCCChHHHHHH
Q 000751 385 SQIGLVTQEPA--LL-SLSIRDNIAYGR-----DATLDQIEEAAKIAHAHTFISSLEKGYE-TQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 385 ~~i~~v~Q~~~--l~-~~ti~~ni~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~vg~~g~~LSgGqkqri 455 (1303)
++++|++|++. ++ ..|++||+.++. ...++...++. ++.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 579999998642 11111111111 1223333 332 345566678999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeecc
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g 526 (1303)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988754 799999999999987 59999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=362.88 Aligned_cols=220 Identities=22% Similarity=0.377 Sum_probs=183.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH-Hhcce
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 387 (1303)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 3 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 78999999995 346999999999999999999999999999999999999999999999999998777654 35679
Q ss_pred EEEecccccccH-hHHHHHhcCCCCCHH---HH---HHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 388 GLVTQEPALLSL-SIRDNIAYGRDATLD---QI---EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 388 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~---~~---~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
+|++|++.+|.+ |++||+.++...... .+ ........+.+.++.+ |++.........||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999975 999999886321000 00 0000111223334443 45555566677899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhh
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
++.+|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988778999999999999864 99999999999999999988864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=364.44 Aligned_cols=216 Identities=25% Similarity=0.383 Sum_probs=183.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH-Hhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 386 (1303)
.++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 378999999995 347999999999999999999999999999999999999999999999999998777544 5788
Q ss_pred eEEEeccccccc-HhHHHHHhcCCC----CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhh
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGRD----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal 461 (1303)
|+||+|++.+|. .|++||+.++.. .+.++.+ ..+++.++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999887 599999987531 2222111 1223344444 455555667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 462 ~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
+++|++|||||||++||+.+.+.+.+.+..+. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999888765 4899999999998765 599999999999999999998865
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=362.88 Aligned_cols=227 Identities=23% Similarity=0.386 Sum_probs=184.4
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCee-----CCCCCHHH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRD-----LKLYNLRW 1127 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~d-----i~~~~~~~ 1127 (1303)
.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGPR---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCCc---eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 48999999999743 59999999999999999999999999999999999999999999999998 87776654
Q ss_pred ----hhcceEEEccCCc--cCc-ccHHHHHHcCC---CCCCHHHHHHHHHHhchHHHHHhCCCCcc-cccCCCCCCCChH
Q 000751 1128 ----LRNHLGLVQQEPI--IFS-TTIRENIIYAR---HNASEAEVKEAARIANAHHFISSLPHGYD-THVGMRGVDLTPG 1196 (1303)
Q Consensus 1128 ----lR~~i~~VpQdp~--LF~-gTIreNl~~g~---~~~~~~ei~~al~~a~l~~~I~~lp~Gld-t~vge~G~~LSgG 1196 (1303)
+|+.++||||+|. ++. .|+.+|+.+.. ...+..++.+ ...++++.+ |++ +.....+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 343 58899986421 1111122211 124455554 332 3455667799999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecC
Q 000751 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1197 QrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt 1274 (1303)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++...+ +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999886543 689999999999987 599999999999999999
Q ss_pred hHHHhhcC-chhHHHH
Q 000751 1275 HDSLLAKN-GLYVRLM 1289 (1303)
Q Consensus 1275 ~~eLl~~~-g~y~~l~ 1289 (1303)
++++.... ..|.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 236 TDQVLDDPQHPYTQLL 251 (258)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 99998653 3454443
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=369.63 Aligned_cols=218 Identities=28% Similarity=0.463 Sum_probs=180.9
Q ss_pred ccEEEEEEEEEcCCCC--CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCC----C-C
Q 000751 307 GNIEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN----L-K 379 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~-~ 379 (1303)
+.|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999996321 1359999999999999999999999999999999999999999999999998852 2 3
Q ss_pred HHHHhcceEEEeccc--ccccHhHHHHHhcCC---CCCHHHHH----HHHHHhcchHHHHhcccccCccccCCCCCCChH
Q 000751 380 LEWLRSQIGLVTQEP--ALLSLSIRDNIAYGR---DATLDQIE----EAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (1303)
Q Consensus 380 ~~~~~~~i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~~~~~----~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgG 450 (1303)
...+|+.|+||+|++ .+|..|++||+.++. ....++.. +.++..+ +|.+ ........||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQ-------LPED---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CChh---HhcCChhhCCHH
Confidence 566788999999998 467889999999863 22332222 2222222 2222 234566789999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccC
Q 000751 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (1303)
Q Consensus 451 qkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~ 527 (1303)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998875 3799999999999875 599999999999999999
Q ss_pred hHHHhhc
Q 000751 528 HDELLAT 534 (1303)
Q Consensus 528 ~~~l~~~ 534 (1303)
++++...
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9888654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=362.65 Aligned_cols=210 Identities=29% Similarity=0.452 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH-Hhcce
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQI 387 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 387 (1303)
|+++||+++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 47899999995 347999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEecccccccH-hHHHHHhcCC-CC--CH-HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhc
Q 000751 388 GLVTQEPALLSL-SIRDNIAYGR-DA--TL-DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (1303)
Q Consensus 388 ~~v~Q~~~l~~~-ti~~ni~~~~-~~--~~-~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~ 462 (1303)
+|++|++.+|.. |++||+.++. .. .. +...++++.. ++++.........||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF----------PVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHH----------HhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999975 9999998764 21 11 1122222222 12233345566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHH
Q 000751 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 463 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 531 (1303)
++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999988753 7999999999999875 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=358.02 Aligned_cols=200 Identities=28% Similarity=0.454 Sum_probs=172.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHH---HHhc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE---WLRS 385 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~~~ 385 (1303)
|+++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 35799999999999999999999999999999999999999999999999999877643 4678
Q ss_pred ceEEEeccccccc-HhHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 386 QIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 386 ~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
.++|++|++.+|. .|++||+.++. ... ++++.++++..++.+++... ...||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 8999999999885 79999998752 112 24456666666665444333 34799999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCce
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~ 521 (1303)
||||+++|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998874 58999999999999875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=369.10 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=183.7
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc-----CCccEEEECCeeCCCC--CH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD-----PVAGQVLLDGRDLKLY--NL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~-----~~~G~I~idG~di~~~--~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGEF---EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 58999999999642 49999999999999999999999999999999999864 4999999999998653 33
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARH--NA-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++||||+|.+|+.|++|||.++.. .. + ++++.++++..++.+.+. + ........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---D----RLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---h----HhhCChhhCCHHHH
Confidence 467889999999999999999999987531 11 1 223455666665532221 1 22334568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++|||||+++|++|||||||++||+++...+.+.|++... ++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998754 589999999999875 599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+.++
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 9875
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=363.07 Aligned_cols=203 Identities=28% Similarity=0.373 Sum_probs=176.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 599999999995 357999999999999999999999999999999999999999999999998753 457789
Q ss_pred EEEeccccccc-HhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCC
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNP 465 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~ 465 (1303)
+|++|++.+|. .|++||+.++. ...++++.++++..++.+. ......+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999886 79999999864 2224455666666655443 33445689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChH
Q 000751 466 SILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 466 ~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~ 529 (1303)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998863 3799999999999875 59999999999999888754
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=363.25 Aligned_cols=216 Identities=27% Similarity=0.449 Sum_probs=181.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCC--------H
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK--------L 380 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--------~ 380 (1303)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+ .
T Consensus 4 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 88999999995 346999999999999999999999999999999999999999999999999986542 3
Q ss_pred HHHhcceEEEeccccccc-HhHHHHHhcCC----CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
..+++.++||+|++.+|. .|++||+.++. ....++..+. +.+.++.+ |++........+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 457789999999998885 79999998742 1222221111 12233333 444444556778999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhh
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 48999999999999864 99999999999999999998865
Q ss_pred c
Q 000751 534 T 534 (1303)
Q Consensus 534 ~ 534 (1303)
.
T Consensus 234 ~ 234 (250)
T PRK11264 234 D 234 (250)
T ss_pred C
Confidence 4
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=363.25 Aligned_cols=219 Identities=25% Similarity=0.384 Sum_probs=188.7
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCCC--CH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKLY--NL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~~--~~ 1125 (1303)
.+.+++.+++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|++||.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4789999999963 3599999999999999999999999999999999999986 799999999998653 44
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN-----ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~-----~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
..+|++++||||+|.+|+.|++|||.++... ...+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 5678899999999999999999999876321 123467778888877655432 2234566899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEe--------CCEEEE
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLN--------GGRIVE 1271 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~--------~G~Ive 1271 (1303)
++||||++++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|+ +|++++
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 9999999999999999999999999999999999998754 589999999999875 599999996 899999
Q ss_pred ecChHHHhhcC
Q 000751 1272 EGTHDSLLAKN 1282 (1303)
Q Consensus 1272 ~Gt~~eLl~~~ 1282 (1303)
.|+++++++..
T Consensus 237 ~g~~~~~~~~~ 247 (261)
T PRK14263 237 MGPTAQIFQNP 247 (261)
T ss_pred eCCHHHHHhCC
Confidence 99999998653
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=363.19 Aligned_cols=211 Identities=27% Similarity=0.392 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 78999999995 346999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEeccccc-ccHhHHHHHhcCC-CC--C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPAL-LSLSIRDNIAYGR-DA--T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l-~~~ti~~ni~~~~-~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
|++|++.+ +..|++||+.++. .. + ++++.++++..++.+ ........||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHH
Confidence 99999987 5789999998863 11 1 223444555554433 2334456899999999999999
Q ss_pred hc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 461 VL------LNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 461 l~------~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
|+ .+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4899999999999886 5999999999999999999887
Q ss_pred hh
Q 000751 532 LA 533 (1303)
Q Consensus 532 ~~ 533 (1303)
..
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 65
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=356.90 Aligned_cols=200 Identities=36% Similarity=0.606 Sum_probs=170.5
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 000751 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (1303)
Q Consensus 310 ~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 389 (1303)
+++|++++|++. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999531 2569999999999999999999999999999999999999999999999999988877788899999
Q ss_pred Eecccc--cccHhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 390 VTQEPA--LLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 390 v~Q~~~--l~~~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
++|++. ++..|++||+.++. ..+. +++.+.++..++.+ .+......||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-----------LRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHHHHHH
Confidence 999983 67889999998753 1222 23334444444433 3344556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCce
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~ 521 (1303)
|+++|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998875 48999999999999876 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=366.28 Aligned_cols=216 Identities=25% Similarity=0.436 Sum_probs=182.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCCCC--HH
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNLK--LE 381 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~~--~~ 381 (1303)
-+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 46899999995 3579999999999999999999999999999999999986 47999999999886543 34
Q ss_pred HHhcceEEEecccccccHhHHHHHhcCC---CC--C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 382 WLRSQIGLVTQEPALLSLSIRDNIAYGR---DA--T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
.+|+.++||+|++.+|.+|++||+.++. +. . ++++.++++..++.+++ .+.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 5788999999999999899999998752 11 1 12344455555544322 1234556778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 4999999999999999999988
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=364.48 Aligned_cols=217 Identities=28% Similarity=0.449 Sum_probs=185.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCCC--CH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 380 (1303)
.|+++|++|+|+ ++++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 489999999995 35799999999999999999999999999999999999763 489999999998765 45
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCC---C-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~---~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
...++.|+|++|++.+|+.|++||+.++.. . . ++++.++++..++.+. +.+..+..+..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHH
Confidence 667889999999999998999999998631 1 1 1233444444444322 22345677789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 5999999999999999999988
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 653
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=363.44 Aligned_cols=218 Identities=23% Similarity=0.423 Sum_probs=185.5
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC--C---CCcEEEECCeecCCC--C
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKNL--K 379 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~~--~ 379 (1303)
+.|+++|++|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFG---KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 4699999999995 3469999999999999999999999999999999999986 4 689999999998643 4
Q ss_pred HHHHhcceEEEeccccccc-HhHHHHHhcCC---C-CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChH
Q 000751 380 LEWLRSQIGLVTQEPALLS-LSIRDNIAYGR---D-ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450 (1303)
Q Consensus 380 ~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~---~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgG 450 (1303)
...+|+.|+||+|++.+|. .|++||+.++. . .+. +++.++++..++.+++.. .....+..||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 4567889999999999887 69999998752 1 122 234555556665443322 233456789999
Q ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChH
Q 000751 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 451 qkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~ 529 (1303)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877899999999999985 59999999999999999999
Q ss_pred HHhhc
Q 000751 530 ELLAT 534 (1303)
Q Consensus 530 ~l~~~ 534 (1303)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 98654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=357.11 Aligned_cols=201 Identities=26% Similarity=0.450 Sum_probs=171.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH---HHHhc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL---EWLRS 385 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~~~ 385 (1303)
++++|++++|++ .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 478999999953 2469999999999999999999999999999999999999999999999999987654 34678
Q ss_pred ceEEEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 386 QIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 386 ~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
.|+||+|++.+|. .|++||+.++. ..+. +++.++++..++.+... ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 8999999999887 59999998753 1222 23455555555544333 3345899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceE
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i 522 (1303)
|||++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 58999999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=365.94 Aligned_cols=217 Identities=26% Similarity=0.397 Sum_probs=184.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 380 (1303)
.++++|++|+|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYG---EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 599999999995 3469999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CCCHH-----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DATLD-----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~~~~-----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+++.|+|++|++.+|..|++||+.++. ..+++ ++.++++..++.+ ++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 66788999999999999899999998753 22211 1233333333222 222334567789999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999976 5999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=361.69 Aligned_cols=225 Identities=24% Similarity=0.426 Sum_probs=187.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECC------eeCCCCCHH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG------RDLKLYNLR 1126 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG------~di~~~~~~ 1126 (1303)
.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+++..
T Consensus 10 ~i~~~~~~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYINDK---AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCCc---eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 58999999999743 499999999999999999999999999999999999999987666655 677777778
Q ss_pred HhhcceEEEccCCccCcc-cHHHHHHcCCC--CC-CHHH----HHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1127 WLRNHLGLVQQEPIIFST-TIRENIIYARH--NA-SEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1127 ~lR~~i~~VpQdp~LF~g-TIreNl~~g~~--~~-~~~e----i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
.+|++++|+||+|.+|++ |++||+.++.. .. ++++ +.++++..++++++. .........||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 889999999999999976 99999986532 11 2223 345555555543221 122345568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhH-hhcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+++||||||++||..+++.+.+.|.+... ++|+|++||+++.+ ..||++++|++|++++.|++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999998754 59999999999988 5699999999999999999999
Q ss_pred HhhcC-chhHHH
Q 000751 1278 LLAKN-GLYVRL 1288 (1303)
Q Consensus 1278 Ll~~~-g~y~~l 1288 (1303)
+.+.. ..|.+.
T Consensus 239 ~~~~~~~~~~~~ 250 (257)
T PRK14246 239 IFTSPKNELTEK 250 (257)
T ss_pred HHhCCCcHHHHH
Confidence 98753 345443
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=366.88 Aligned_cols=212 Identities=28% Similarity=0.471 Sum_probs=180.3
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecC--CCCHHHHhcc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK--NLKLEWLRSQ 386 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~~~~ 386 (1303)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. +.+...+|++
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 68999999995 346999999999999999999999999999999999999999999999999985 3345567889
Q ss_pred eEEEecccc--cccHhHHHHHhcCC---CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 387 IGLVTQEPA--LLSLSIRDNIAYGR---DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 387 i~~v~Q~~~--l~~~ti~~ni~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
|+||+|++. ++..|+.+|+.++. ..+.+ ++.++++..++.++. ......||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 999999985 56789999998752 22332 233445555543332 23456899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998874 5899999999999985 5999999999999999999888654
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=342.77 Aligned_cols=172 Identities=38% Similarity=0.604 Sum_probs=161.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|++ .+.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPG-AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 478999999963 2346999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecccccccHhHHHHHhcCCCCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCCEE
Q 000751 389 LVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSIL 468 (1303)
Q Consensus 389 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~il 468 (1303)
|++|++.+|..|++||+ ||||||||++||||++.+|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccccCEEEEEeCceE
Q 000751 469 LLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVMDEGRL 522 (1303)
Q Consensus 469 ilDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~~d~i~~l~~G~i 522 (1303)
||||||++||+.+...+.+.++++. +++|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999998875 48899999999999888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=362.75 Aligned_cols=217 Identities=29% Similarity=0.456 Sum_probs=185.9
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCCC--CH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 380 (1303)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 489999999995 34699999999999999999999999999999999999875 799999999998643 34
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CC-CH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
...++.++||+|++.+|..|++||+.++. .. +. +++.++++.+++.+.+. .........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHHH
Confidence 56788999999999999999999999763 11 22 23455666665543332 223456678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++||||++++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 654
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=362.76 Aligned_cols=216 Identities=27% Similarity=0.465 Sum_probs=185.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecC-CCCHH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIK-NLKLE 381 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~-~~~~~ 381 (1303)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 488999999995 35799999999999999999999999999999999999986 5999999999985 44566
Q ss_pred HHhcceEEEecccccccHhHHHHHhcCC---CCC-H----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 382 WLRSQIGLVTQEPALLSLSIRDNIAYGR---DAT-L----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~~-~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
.+|+.++||+|++.+|..|++||+.++. ... + +++.++++..++.+.+. +........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 7888999999999999999999998763 111 1 23344455555543332 3345566789999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHh
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999775 9999999999999999988875
Q ss_pred h
Q 000751 533 A 533 (1303)
Q Consensus 533 ~ 533 (1303)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 4
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=365.01 Aligned_cols=214 Identities=23% Similarity=0.429 Sum_probs=181.9
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCC--------
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL-------- 378 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-------- 378 (1303)
+.++++|++|+|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4699999999995 34699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhcceEEEeccccccc-HhHHHHHhcCC----CCCH----HHHHHHHHHhcchHHHHhcccccCccc-cCC
Q 000751 379 -----KLEWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFISSLEKGYETQV-GRA 443 (1303)
Q Consensus 379 -----~~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~v-g~~ 443 (1303)
....+++.|+||+|++.+|. .|++||+.++. .... +++.++++..++ .... ...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~ 149 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI-----------DERAQGKY 149 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-----------ChhhhhCC
Confidence 13466789999999999996 59999998642 1222 223333444333 3322 455
Q ss_pred CCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCce
Q 000751 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521 (1303)
Q Consensus 444 g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~ 521 (1303)
...||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 67899999999999999999999999999999999999999999998875 48999999999999875 99999999999
Q ss_pred EeeccChHHHhhc
Q 000751 522 LFEMGTHDELLAT 534 (1303)
Q Consensus 522 i~~~g~~~~l~~~ 534 (1303)
+++.|+++++...
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999988654
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=371.74 Aligned_cols=211 Identities=26% Similarity=0.396 Sum_probs=178.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ....|++|
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 489999999995 34699999999999999999999999999999999999999999999999998654 35678899
Q ss_pred EEEeccccccc-HhHHHHHhcC-C--CCCHHHH----HHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALLS-LSIRDNIAYG-R--DATLDQI----EEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~-~--~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
+||+|++.++. .|++||+.+. . ..+.++. .++++..++ ++..+ .....||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l-------~~~~~----~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKAD----VRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC-------hhHhc----CchhhCCHHHHHHHHHHH
Confidence 99999998884 7999999753 2 2333322 223333332 22223 344579999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999998874 5899999999999986 599999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=362.23 Aligned_cols=218 Identities=28% Similarity=0.444 Sum_probs=183.7
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc--C---CccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD--P---VAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~--~---~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 259999999999999999999999999999999999975 4 58999999999864 345
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCC--CC-C----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARH--NA-S----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQK 1198 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~--~~-~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQr 1198 (1303)
..+|++++|+||+|.+|+.|+++|+.++.. .. . ++++.++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 577889999999999999999999986421 11 1 23345555665554322 1223344568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1199 QRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1199 QRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
||++||||++++|+||||||||++||+.+.+.+.+.|++... ++|+|+|||+++.+. .||+|++|++|++++.|++.+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQ 233 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999998755 489999999999885 599999999999999999999
Q ss_pred Hhhc
Q 000751 1278 LLAK 1281 (1303)
Q Consensus 1278 Ll~~ 1281 (1303)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14255 234 MFLN 237 (252)
T ss_pred HhcC
Confidence 8765
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=361.24 Aligned_cols=216 Identities=25% Similarity=0.415 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecC------CCCHH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIK------NLKLE 381 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~------~~~~~ 381 (1303)
.++++|++|+|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+..
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 378999999995 346999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcceEEEeccccccc-HhHHHHHhcCC----CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 382 WLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
.+|++|+|++|++.+|. .|++||+.++. ....++..+ .+.+.++.+ |++..+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 67889999999999886 59999997531 122222111 122233333 4444445556789999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
||||++++|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998875 4899999999999986 499999999999999999888654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=366.10 Aligned_cols=217 Identities=26% Similarity=0.412 Sum_probs=185.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCCCC-HH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNLK-LE 381 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~-~~ 381 (1303)
.++++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 589999999995 35799999999999999999999999999999999999986 6999999999987653 45
Q ss_pred HHhcceEEEecccccccHhHHHHHhcCC----CCCHHHHH----HHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 382 WLRSQIGLVTQEPALLSLSIRDNIAYGR----DATLDQIE----EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~~l~~~ti~~ni~~~~----~~~~~~~~----~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
.+++.|+||+|++.+|..|++||+.++. ..+++++. +.++.+++.+ .+++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHH
Confidence 6788999999999999999999999763 13444333 2233333322 2223455677899999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHh
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998876799999999999876 59999999999999999999987
Q ss_pred hc
Q 000751 533 AT 534 (1303)
Q Consensus 533 ~~ 534 (1303)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 64
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=332.78 Aligned_cols=223 Identities=28% Similarity=0.435 Sum_probs=188.1
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHh-hcc
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL-RNH 1131 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~l-R~~ 1131 (1303)
-++++|++..|.. ..+|++|||++++||+++++||||+||||++++|+|+.++.+|+|.++|.||+..+++.. |.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999964 359999999999999999999999999999999999999999999999999999988755 778
Q ss_pred eEEEccCCccCc-ccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcC
Q 000751 1132 LGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1132 i~~VpQdp~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~ 1210 (1303)
|+||||...+|+ -||.|||.+|.....+++-++. .+++..+-+| -+......++.+|||||+|-+||||||..+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999997 5999999987432222111110 1222223334 355555667789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchh-HhhcCEEEEEeCCEEEEecChHHHhhcCc
Q 000751 1211 APILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEGTHDSLLAKNG 1283 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~t-i~~~D~Iivl~~G~Ive~Gt~~eLl~~~g 1283 (1303)
|++|+|||||.+|-|.--+.|.++|+++.++ +.||++|-++... ++-+||.+||++|+|+.+|+.+||.++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999999998644 4699999999985 56799999999999999999999998743
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=362.98 Aligned_cols=218 Identities=29% Similarity=0.441 Sum_probs=186.6
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC-----CccEEEECCeeCCC--CCH
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP-----VAGQVLLDGRDLKL--YNL 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~-----~~G~I~idG~di~~--~~~ 1125 (1303)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| .+|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~~---~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGGF---LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCCe---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 69999999999742 599999999999999999999999999999999999864 58999999999864 344
Q ss_pred HHhhcceEEEccCCccCcccHHHHHHcCCCC-----CCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHH
Q 000751 1126 RWLRNHLGLVQQEPIIFSTTIRENIIYARHN-----ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1126 ~~lR~~i~~VpQdp~LF~gTIreNl~~g~~~-----~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQR 1200 (1303)
..+|++++|+||++.+|+.|++|||.++... ..++++.++++.+++.+.+.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 5678999999999999999999999875321 123445667777776554432 2234456899999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEe---------CCEEE
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLN---------GGRIV 1270 (1303)
Q Consensus 1201 laLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~---------~G~Iv 1270 (1303)
++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|+ +|+++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 9999999999999999999999999999999999998765 589999999999875 699999997 89999
Q ss_pred EecChHHHhhc
Q 000751 1271 EEGTHDSLLAK 1281 (1303)
Q Consensus 1271 e~Gt~~eLl~~ 1281 (1303)
+.|+++++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999999765
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=356.94 Aligned_cols=197 Identities=26% Similarity=0.426 Sum_probs=167.0
Q ss_pred EEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 000751 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389 (1303)
Q Consensus 310 ~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 389 (1303)
+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++|+|
T Consensus 1 ~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYG---GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEEC---CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 3689999995 246999999999999999999999999999999999999999999999998764 46778999
Q ss_pred Eeccccc---ccHhHHHHHhcCCCC-----------CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHH
Q 000751 390 VTQEPAL---LSLSIRDNIAYGRDA-----------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 390 v~Q~~~l---~~~ti~~ni~~~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqri 455 (1303)
|+|++.+ ++.|++||+.++... .++++.++++..++.++.. ....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHH
Confidence 9999976 568999999876421 1234555666666554433 33457999999999
Q ss_pred HHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceEeecc
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 456 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g 526 (1303)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998875 68999999999999864 9999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=363.85 Aligned_cols=217 Identities=28% Similarity=0.460 Sum_probs=185.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCCC--CH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKNL--KL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 380 (1303)
-|+++|++|+|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeC---CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 489999999995 35799999999999999999999999999999999999984 899999999988653 34
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CC-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+++.++|++|++.+|..|++||+.++. .. . ++++.++++..++.+.+. +.......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 56788999999999999999999998753 11 1 123445555555543332 234566778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877899999999999765 5999999999999999999988
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=335.15 Aligned_cols=221 Identities=28% Similarity=0.418 Sum_probs=189.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH-Hhcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW-LRSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 386 (1303)
-++++|++-.|. ...+|++|||++++||+++++|+||+|||||++.|+|+.+|.+|+|.++|.|+...++.. .|..
T Consensus 3 mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 378999999994 468999999999999999999999999999999999999999999999999999997755 5778
Q ss_pred eEEEeccccccc-HhHHHHHhcCCCCCHH-HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccC
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGRDATLD-QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLN 464 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~ 464 (1303)
|+||||.-.+|. .||+||+.+|.....+ +.. ...+++-.+-+| -+......++.+|||||+|-+||||||..+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999995 7999999998522111 111 111222333445 355667788999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccc-cccCEEEEEeCceEeeccChHHHhhcCh
Q 000751 465 PSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATGD 536 (1303)
Q Consensus 465 ~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 536 (1303)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +.||++|-++.... +.|||.+||++|+|+.+|+.+||.++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 999999999999999999999999999874 66999999999875 5699999999999999999999987643
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=354.86 Aligned_cols=206 Identities=22% Similarity=0.395 Sum_probs=178.9
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
++++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGKQ---TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECCE---EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 4789999999742 5999999999999999999999999999999999999999999999999876422 35799
Q ss_pred EEccCCccCc-ccHHHHHHcCCC--CCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcC
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARH--NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~--~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~ 1210 (1303)
|+||++.+|. .|++||+.++.. ..+++++.++++..++.+..... ..+||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 699999975421 23456778888888776554332 347999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHH
Q 000751 1211 APILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~e 1277 (1303)
|++|||||||++||+.+.+.+.+.|++...+++|+|++||+++.+. .||+|++|++|++++.|++.+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999987554689999999999875 699999999999999999875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=366.39 Aligned_cols=213 Identities=31% Similarity=0.497 Sum_probs=181.5
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCC--CCHHHHhcc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--LKLEWLRSQ 386 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~ 386 (1303)
|+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999952 3469999999999999999999999999999999999999999999999999852 234567889
Q ss_pred eEEEeccc--ccccHhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 387 IGLVTQEP--ALLSLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 387 i~~v~Q~~--~l~~~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
|+|++|++ .+|..|++||+.++. ..+. +++.++++.+++.++ .......||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF-----------ENKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 99999997 578889999998763 1222 234445555554322 223355899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|||++.+|++|||||||++||+.+...+.+.+.++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 4899999999999886 5999999999999999999988654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=370.88 Aligned_cols=211 Identities=19% Similarity=0.356 Sum_probs=182.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.+|
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999994 3569999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
|+||++.++. .|++||+.+.. .... +++.++++.. |++.........||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELV-----------GLRPEQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCchHhcCchhhCCHHHHHHHHHHHH
Confidence 9999999986 49999998642 1222 2233333333 44444555667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhhc
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|+.+|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998878999999999998865 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=352.55 Aligned_cols=200 Identities=24% Similarity=0.390 Sum_probs=172.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|++ .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 578999999952 22 39999999999999999999999999999999999999999999999977654 357899
Q ss_pred EEeccccccc-HhHHHHHhcCCC-------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGRD-------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
|++|++.+|. .|++||+.++.. .+++++.++++..++.+.....| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999986 599999987632 12345667777777665554443 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccc-cCEEEEEeCceEeecc
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g 526 (1303)
++++|++|||||||++||+++...+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999998875 38999999999999865 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=365.75 Aligned_cols=218 Identities=28% Similarity=0.458 Sum_probs=185.1
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--CC
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LK 379 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~ 379 (1303)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~---~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 3589999999995 3469999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcceEEEecccccccHhHHHHHhcCC---CC---CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHH
Q 000751 380 LEWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA---TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 380 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkq 453 (1303)
...+++.++||+|++.+|..|++||+.++. .. .++++.++++..++...+. .........|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 566788999999999999889999998752 11 1334555666655543332 1234566789999999
Q ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEE-EEeCceEeeccChHHH
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIA-VMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 454 rialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l 531 (1303)
|++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999865 99975 5799999999999888
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 653
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=347.17 Aligned_cols=225 Identities=29% Similarity=0.488 Sum_probs=193.6
Q ss_pred cEEEEEEEEEcCCCC---------------------CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc
Q 000751 308 NIEFRNVYFSYLSRP---------------------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~---------------------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 366 (1303)
.|+++||++-|..++ ..--++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588888888875321 11248899999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHh----cceEEEecccccc-cHhHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhccc
Q 000751 367 EVLLDGENIKNLKLEWLR----SQIGLVTQEPALL-SLSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEK 434 (1303)
Q Consensus 367 ~i~~~g~~~~~~~~~~~~----~~i~~v~Q~~~l~-~~ti~~ni~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~ 434 (1303)
+|+++|.|+..++.+.|| +++++|+|+.-|| +-||.||..||.+ .. +++..++++.++|+.|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999988875 5799999999988 5899999999952 22 3446677788888888777765
Q ss_pred ccCccccCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcc-cccc
Q 000751 435 GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSL-IRNA 511 (1303)
Q Consensus 435 g~~t~vg~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~-~~~~ 511 (1303)
.||||+|||+.|||||..+|+||++|||+|||||--...+++.|.++. -+||+|+|||+++. ++-.
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 699999999999999999999999999999999999999998887664 37999999999987 5679
Q ss_pred CEEEEEeCceEeeccChHHHhhcCh--hHHHHHH
Q 000751 512 DYIAVMDEGRLFEMGTHDELLATGD--LYAELLK 543 (1303)
Q Consensus 512 d~i~~l~~G~i~~~g~~~~l~~~~~--~~~~~~~ 543 (1303)
|||..|++|+|+..|+++|++.+.. +-+++++
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHh
Confidence 9999999999999999999988743 3344443
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=376.06 Aligned_cols=209 Identities=26% Similarity=0.399 Sum_probs=178.2
Q ss_pred eeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC----HHHhhcceE
Q 000751 1058 NVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN----LRWLRNHLG 1133 (1303)
Q Consensus 1058 ~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~----~~~lR~~i~ 1133 (1303)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999632 35 999999999999999999999999999999999999999999999987542 345688999
Q ss_pred EEccCCccCcc-cHHHHHHcCCCCCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHh
Q 000751 1134 LVQQEPIIFST-TIRENIIYARHNAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAll 1208 (1303)
||||++.+|+. |++||+.++..... ++++.++++..++.+... ....+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-----------RLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 99999998643222 123555666665554443 334589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhcC
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1209 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
++|++|||||||++||+.+.+.+.+.|++..++ ++|+|+|||+++.+. .||+|++|++|++++.|+++++..+.
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999999999987543 689999999999875 49999999999999999999998764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=355.74 Aligned_cols=203 Identities=27% Similarity=0.418 Sum_probs=172.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH---Hhc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LRS 385 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~~~ 385 (1303)
|+++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 357999999999999999999999999999999999999999999999999998776443 678
Q ss_pred ceEEEecccccc-cHhHHHHHhcCC---CCCHHH----HHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 386 QIGLVTQEPALL-SLSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 386 ~i~~v~Q~~~l~-~~ti~~ni~~~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
.++|++|++.++ ..|++||+.++. ..++++ +.++++..++.+++ ......||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHHH
Confidence 999999999874 689999998763 233322 33444444443332 33456899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc-cCEEEEEeCceEee
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFE 524 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~ 524 (1303)
|||++.+|++|||||||++||+.+.+.+.+.|.++. ++.|+|++||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999998874 47899999999999875 99999999999864
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=356.17 Aligned_cols=207 Identities=25% Similarity=0.344 Sum_probs=175.5
Q ss_pred cEEEEEEEEEcCCCCC-CCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHH---H
Q 000751 308 NIEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---L 383 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 383 (1303)
.|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999963211 35999999999999999999999999999999999999999999999999998876543 2
Q ss_pred -hcceEEEeccccccc-HhHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHH
Q 000751 384 -RSQIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (1303)
Q Consensus 384 -~~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqr 454 (1303)
++.|+|++|++.+|. .|+.||+.++. ... .+++.++++..++.+.+.. ....||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHH
Confidence 357999999999887 59999998642 122 2345556666665544433 335799999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccccCEEEEEeCceEeec
Q 000751 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525 (1303)
Q Consensus 455 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~ 525 (1303)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998874 37899999999999888999999999999763
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=361.50 Aligned_cols=231 Identities=28% Similarity=0.407 Sum_probs=188.0
Q ss_pred cEEEEeeEEECCCC------CCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCH-
Q 000751 1053 SIELKNVDFCYPSR------PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNL- 1125 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~- 1125 (1303)
.|+++||+++|+.. .+.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38899999999731 02369999999999999999999999999999999999999999999999999988765
Q ss_pred --HHhhcceEEEccCCc--cC-cccHHHHHHcCCC---CCCHHHHHHHHHHhchHHHHHhCCCCccc-ccCCCCCCCChH
Q 000751 1126 --RWLRNHLGLVQQEPI--IF-STTIRENIIYARH---NASEAEVKEAARIANAHHFISSLPHGYDT-HVGMRGVDLTPG 1196 (1303)
Q Consensus 1126 --~~lR~~i~~VpQdp~--LF-~gTIreNl~~g~~---~~~~~ei~~al~~a~l~~~I~~lp~Gldt-~vge~G~~LSgG 1196 (1303)
..+|+.++|+||++. ++ ..|+++|+.+... ..+.+ .....+.+.+..+ |+++ ........||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 357889999999983 44 4699999864311 11111 1112233444443 5543 345566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecC
Q 000751 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1197 QrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt 1274 (1303)
||||++|||||+++|+||||||||++||+.+...+.+.|++..++ ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 999999999999999999999999999999999999999987542 689999999999987 599999999999999999
Q ss_pred hHHHhhcCchhHHHHh
Q 000751 1275 HDSLLAKNGLYVRLMQ 1290 (1303)
Q Consensus 1275 ~~eLl~~~g~y~~l~~ 1290 (1303)
++++....+.|..-+.
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (268)
T PRK10419 236 VGDKLTFSSPAGRVLQ 251 (268)
T ss_pred hhhccCCCCHHHHHHH
Confidence 9999876665554444
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=363.13 Aligned_cols=211 Identities=27% Similarity=0.408 Sum_probs=182.2
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 68999999995 347999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEecccc-cccHhHHHHHhcCC-CC----------CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHH
Q 000751 389 LVTQEPA-LLSLSIRDNIAYGR-DA----------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 389 ~v~Q~~~-l~~~ti~~ni~~~~-~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqria 456 (1303)
|++|++. .+..|++||+.++. .. ..+++.++++..++. .........||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-----------HLADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCCHHHHHHHH
Confidence 9999985 45689999998863 11 112344444444443 2334456689999999999
Q ss_pred HHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhh
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
||||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998875 4789999999999985 599999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=364.52 Aligned_cols=213 Identities=23% Similarity=0.367 Sum_probs=185.0
Q ss_pred ccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcc
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (1303)
Q Consensus 307 ~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 386 (1303)
..|+++|++++|+ +..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 3699999999995 3469999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEecccccc-cHhHHHHHhcCC-CC----------CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHH
Q 000751 387 IGLVTQEPALL-SLSIRDNIAYGR-DA----------TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (1303)
Q Consensus 387 i~~v~Q~~~l~-~~ti~~ni~~~~-~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqr 454 (1303)
|+||+|++.+| ..|++||+.++. .. .++++.++++..++.++ .......||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHH
Confidence 99999999887 479999998753 11 12244555555555433 334556899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 455 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
++||||++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 789999999999875 5999999999999999999887
Q ss_pred hh
Q 000751 532 LA 533 (1303)
Q Consensus 532 ~~ 533 (1303)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=370.07 Aligned_cols=217 Identities=25% Similarity=0.378 Sum_probs=182.3
Q ss_pred cEEEEEEEEEcCCCC-------CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCH
Q 000751 308 NIEFRNVYFSYLSRP-------EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~ 380 (1303)
-|+++|++++|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcceEEEecccc--ccc-HhHHHHHhcC----CCCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCC
Q 000751 381 E---WLRSQIGLVTQEPA--LLS-LSIRDNIAYG----RDAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446 (1303)
Q Consensus 381 ~---~~~~~i~~v~Q~~~--l~~-~ti~~ni~~~----~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~ 446 (1303)
. .+|++|+||+|+|. |+. .||.+|+... .... .+++.++++.+++.+ .+++ .....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~----~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYD----RYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhc----CCCcc
Confidence 3 46789999999984 543 5898888632 1122 234555556555532 1222 34568
Q ss_pred CChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEe
Q 000751 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLF 523 (1303)
Q Consensus 447 LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~ 523 (1303)
||||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ |.|+|+|||+++.+. .||+|++|.+|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 899999999999997 49999999999999
Q ss_pred eccChHHHhhc
Q 000751 524 EMGTHDELLAT 534 (1303)
Q Consensus 524 ~~g~~~~l~~~ 534 (1303)
+.|+.+++.++
T Consensus 235 e~g~~~~~~~~ 245 (327)
T PRK11308 235 EKGTKEQIFNN 245 (327)
T ss_pred EECCHHHHhcC
Confidence 99999999875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=362.48 Aligned_cols=217 Identities=28% Similarity=0.463 Sum_probs=186.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.+ .+.
T Consensus 7 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEEC---CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 589999999995 34699999999999999999999999999999999999985 48999999999854 445
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC----CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR----DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~----~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..++..|+||+|++.+|+.|++||+.++. ... ++.+.++++.+++.+++.. .....+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 67788999999999999999999998752 112 2335566666666544432 23456678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEe-----CceEeecc
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMD-----EGRLFEMG 526 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~-----~G~i~~~g 526 (1303)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999988778999999999999864 99999997 59999999
Q ss_pred ChHHHhhc
Q 000751 527 THDELLAT 534 (1303)
Q Consensus 527 ~~~~l~~~ 534 (1303)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99998653
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=361.06 Aligned_cols=217 Identities=27% Similarity=0.475 Sum_probs=187.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 380 (1303)
.++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.. |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 378999999995 3569999999999999999999999999999999999864 489999999999865 345
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---C-CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---D-ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+++.++||+|++.+|..|++||+.++. . .+. +++.++++.+++.+++..+ ....+..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 67788999999999999999999998752 1 122 3455666777776555422 3456778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=358.91 Aligned_cols=203 Identities=24% Similarity=0.365 Sum_probs=172.4
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +.+++
T Consensus 2 l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGGK---PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCCe---eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 7899999999642 599999999999999999999999999999999999999999999999998653 34699
Q ss_pred EEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
|+||++.+|+ .|++||+.++.. ... ++++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999986421 112 234556666666654433 2345899999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHh-hcCEEEEEe--CCEEEEecCh
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMR-HVDNIVVLN--GGRIVEEGTH 1275 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~-~~D~Iivl~--~G~Ive~Gt~ 1275 (1303)
|+++|++|||||||++||+.+...+.+.|++..+ +++|+|+|||+++.+. .||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999998643 3689999999999875 599999998 5999998764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=371.95 Aligned_cols=212 Identities=27% Similarity=0.424 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcce
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +..+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.|
T Consensus 41 ~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 499999999995 356999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEEecccccc-cHhHHHHHhcC-C--CCCHHH----HHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHH
Q 000751 388 GLVTQEPALL-SLSIRDNIAYG-R--DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~-~~ti~~ni~~~-~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialAR 459 (1303)
|||||++.++ ..|++||+.+. . ..+.++ +.++++.++ +++..++. ..+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------L~~~~~~~----~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADAR----VSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------CchhhCCC----hhhCCHHHHHHHHHHH
Confidence 9999999886 57999999853 2 222222 222333332 33333433 4579999999999999
Q ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 460 al~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|+++..|+.+++...
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998875 4899999999999986 4999999999999999999998653
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=352.14 Aligned_cols=205 Identities=28% Similarity=0.449 Sum_probs=176.2
Q ss_pred EEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHH---Hhh
Q 000751 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR---WLR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~---~lR 1129 (1303)
|+++||++.|++.. ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 24599999999999999999999999999999999999999999999999999877643 468
Q ss_pred cceEEEccCCccCc-ccHHHHHHcCCC---CCCH----HHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1130 NHLGLVQQEPIIFS-TTIRENIIYARH---NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~-gTIreNl~~g~~---~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
+.++|+||+|.+|. .|+.||+.++.. ..+. +++.++++.+++.+++.+.| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999997 699999986532 1222 23555666666655554443 47999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEecCchhHhhcCEEEEEeCCEE
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRHVDNIVVLNGGRI 1269 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~~D~Iivl~~G~I 1269 (1303)
+||||++++|++|||||||++||+++.+.+.+.|++..+ .++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998754 36999999999998888999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=376.03 Aligned_cols=201 Identities=24% Similarity=0.392 Sum_probs=172.6
Q ss_pred CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCe----ecCCCCHHHHh----cceEEEeccc
Q 000751 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE----NIKNLKLEWLR----SQIGLVTQEP 394 (1303)
Q Consensus 323 ~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~----~~~~~~~~~~~----~~i~~v~Q~~ 394 (1303)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|. ++...+...++ ++|+||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 346899999999999999999999999999999999999999999999996 66666655443 5799999999
Q ss_pred cccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhccCCC
Q 000751 395 ALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (1303)
Q Consensus 395 ~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~~~~~ 466 (1303)
.+|. .|++||+.++. ..+. ++..++++..++.++.. ....+||||||||++|||||+.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9996 79999999874 1222 23455566665554433 3345799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccc-cccCEEEEEeCceEeeccChHHHhhc
Q 000751 467 ILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 467 ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|++++++.+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999988753 89999999999987 56999999999999999999999865
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=353.78 Aligned_cols=209 Identities=25% Similarity=0.402 Sum_probs=180.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++||+++|+. . ..|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999952 2 2499999999999999999999999999999999999999999999998766542 56899
Q ss_pred EEeccccccc-HhHHHHHhcCC-C------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR-D------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~-~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
|++|++.+|. .|+.||+.++. . ..++++.++++..++.+.+...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999987 59999998753 1 12345667777777766555544 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhhcC
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 9999999999999999999999999999988743 7899999999998864 9999999999999999999887643
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=362.22 Aligned_cols=222 Identities=24% Similarity=0.415 Sum_probs=184.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHH-hcc
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL-RSQ 386 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 386 (1303)
-++++|++++|+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 489999999995 3579999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEeccccccc-HhHHHHHhcCCC-CCH----------HHHH--HHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGRD-ATL----------DQIE--EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~~-~~~----------~~~~--~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
++||+|++.+|. .|++||+.++.. ... ..+. +......+.+.++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 999999999997 599999998631 100 0000 000011123344444 565666777889999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHD 529 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~ 529 (1303)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988753 7899999999999865 9999999999999999998
Q ss_pred HHhhc
Q 000751 530 ELLAT 534 (1303)
Q Consensus 530 ~l~~~ 534 (1303)
++...
T Consensus 240 ~~~~~ 244 (255)
T PRK11300 240 EIRNN 244 (255)
T ss_pred HHhhC
Confidence 87643
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=338.89 Aligned_cols=171 Identities=33% Similarity=0.575 Sum_probs=158.7
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
++++||+++|++. ++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 4789999999743 4999999999999999999999999999999999999999999999999998766 67788999
Q ss_pred EEccCCccCcc-cHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcCCC
Q 000751 1134 LVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP 1212 (1303)
Q Consensus 1134 ~VpQdp~LF~g-TIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ 1212 (1303)
|+||+|.+|.+ |++||+. ||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999986 9999984 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEE
Q 000751 1213 ILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRI 1269 (1303)
Q Consensus 1213 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~I 1269 (1303)
||||||||++||+.+.+.+.+.|++..+++.|+|++||+.+.+. .||+|++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999987555689999999999877 6999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=362.80 Aligned_cols=218 Identities=29% Similarity=0.434 Sum_probs=187.5
Q ss_pred CccEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecC----
Q 000751 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIK---- 376 (1303)
Q Consensus 306 ~~~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~---- 376 (1303)
.+.|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYG---GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEEC---CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 34699999999995 34699999999999999999999999999999999999975 7999999998774
Q ss_pred CCCHHHHhcceEEEecccccccHhHHHHHhcCCC--------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCC
Q 000751 377 NLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRD--------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (1303)
Q Consensus 377 ~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LS 448 (1303)
..+...+++.|+|++|++.+|.+|++||+.++.. ..++++.++++.+++.+.+ .+..+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCC
Confidence 2345577889999999999999999999987631 1134556666666554333 234556677999
Q ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccC
Q 000751 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (1303)
Q Consensus 449 gGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~ 527 (1303)
||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877899999999999986 599999999999999999
Q ss_pred hHHHhh
Q 000751 528 HDELLA 533 (1303)
Q Consensus 528 ~~~l~~ 533 (1303)
++++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 998864
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=367.98 Aligned_cols=218 Identities=18% Similarity=0.269 Sum_probs=179.9
Q ss_pred EEEEEEEEEcCCCCC-CCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC----CCCcEEEECCeecCCCCHHHH
Q 000751 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD----PTLGEVLLDGENIKNLKLEWL 383 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~~~~~~~~~~ 383 (1303)
++++|++++|+.... ..+|+||||+|++||+++|||+||||||||+++|+|+++ |++|+|.++|+|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999964221 369999999999999999999999999999999999998 489999999999998887665
Q ss_pred hc----ceEEEecccc--ccc-HhHHH----HHhcCCCCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCC
Q 000751 384 RS----QIGLVTQEPA--LLS-LSIRD----NIAYGRDAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (1303)
Q Consensus 384 ~~----~i~~v~Q~~~--l~~-~ti~~----ni~~~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LS 448 (1303)
++ .|+||+|+|. +.. .|+.+ ++....... .+++.++++..++.+.. .........||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 43 6999999995 332 35554 444321112 23455666666654321 12345667899
Q ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeec
Q 000751 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEM 525 (1303)
Q Consensus 449 gGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~ 525 (1303)
||||||++|||||+.+|++||+||||++||+.+...+.+.|+++. .|.|+|+|||+++.+. .||+|++|.+|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998875 3899999999999985 5999999999999999
Q ss_pred cChHHHhhc
Q 000751 526 GTHDELLAT 534 (1303)
Q Consensus 526 g~~~~l~~~ 534 (1303)
|+.+++.++
T Consensus 236 g~~~~~~~~ 244 (326)
T PRK11022 236 GKAHDIFRA 244 (326)
T ss_pred CCHHHHhhC
Confidence 999999875
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=357.68 Aligned_cols=224 Identities=24% Similarity=0.391 Sum_probs=184.0
Q ss_pred cEEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccC----CccEEEECCeeCCCCCHHHh
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP----VAGQVLLDGRDLKLYNLRWL 1128 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~----~~G~I~idG~di~~~~~~~l 1128 (1303)
.|+++||+++| +. ++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-AQ---PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-cc---ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 32 499999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEccCCc-cCc--ccHHHHHHcC----CCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHH
Q 000751 1129 RNHLGLVQQEPI-IFS--TTIRENIIYA----RHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1129 R~~i~~VpQdp~-LF~--gTIreNl~~g----~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRl 1201 (1303)
++.++||||+|. .|. .|+.+|+.+. .....++++.++++.+++.+. ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 443 5888887531 112234567777777776432 1233445568999999999
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHh
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1202 aLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
+|||||+++|+||||||||++||+.+.+.+.+.|++..++ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999987543 689999999999885 59999999999999999999998
Q ss_pred hcC-c-hhHHHHh
Q 000751 1280 AKN-G-LYVRLMQ 1290 (1303)
Q Consensus 1280 ~~~-g-~y~~l~~ 1290 (1303)
+.. . .++.++.
T Consensus 230 ~~~~~~~~~~~~~ 242 (254)
T PRK10418 230 NAPKHAVTRSLVS 242 (254)
T ss_pred hCCCCHHHHHHHH
Confidence 763 2 3444554
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=357.00 Aligned_cols=210 Identities=31% Similarity=0.497 Sum_probs=181.3
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++|+|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++...+.. ++.++
T Consensus 1 l~~~~l~~~~~---~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 47899999995 34799999999999999999999999999999999999999999999999999876543 67899
Q ss_pred EEeccccccc-HhHHHHHhcCC---CCC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
||+|++.+|. .|++||+.++. ..+ ++++.++++..++.+++... ...||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRK-----------PSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999986 59999998753 122 23455555655655554443 35899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988753 899999999999986 4999999999999999998887653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=361.77 Aligned_cols=217 Identities=26% Similarity=0.465 Sum_probs=183.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 380 (1303)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYG---SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEEC---CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 489999999995 24699999999999999999999999999999999999974 69999999999853 445
Q ss_pred HHHhcceEEEeccccccc-HhHHHHHhcCC---CC-CH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHH
Q 000751 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGq 451 (1303)
..+|+.|+||+|++.+|. .|++||+.++. .. +. +++.++++..++.+.+ .........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 677889999999999886 69999998753 11 12 2334445555543322 223445667899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEe------CceEee
Q 000751 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMD------EGRLFE 524 (1303)
Q Consensus 452 kqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~------~G~i~~ 524 (1303)
|||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877899999999999875 599999997 899999
Q ss_pred ccChHHHhhc
Q 000751 525 MGTHDELLAT 534 (1303)
Q Consensus 525 ~g~~~~l~~~ 534 (1303)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=360.21 Aligned_cols=217 Identities=26% Similarity=0.375 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 380 (1303)
.+.+++.+++|. +.++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 488999999994 35799999999999999999999999999999999999987 79999999999864 344
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCC------CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqr 454 (1303)
..+++.|+||+|++.+|..|+.||+.++.. ...+++.++++.+++.+.+.. ..++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 567888999999999999999999998741 112456777777776554432 2345677899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEe--------CceEeec
Q 000751 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMD--------EGRLFEM 525 (1303)
Q Consensus 455 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~--------~G~i~~~ 525 (1303)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 9999999999999999999999999999999999998877899999999999875 599999996 8999999
Q ss_pred cChHHHhhc
Q 000751 526 GTHDELLAT 534 (1303)
Q Consensus 526 g~~~~l~~~ 534 (1303)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999998764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=365.02 Aligned_cols=217 Identities=29% Similarity=0.443 Sum_probs=183.1
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCCC--CH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKNL--KL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~~ 380 (1303)
.|+++|++|+|+ +.++|+|+||+|++||+++|+||||||||||+++|.|+.+ |++|+|.++|.++... +.
T Consensus 39 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYG---EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 589999999995 2469999999999999999999999999999999999864 4999999999988643 33
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CC-CH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-TL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+|+.|+||+|++.+|..|+.||+.++. .. +. +++.++++..++.+.+. .........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHHH
Confidence 45788999999999999889999999863 11 11 23344445444432221 123456678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999986 5999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
.+.
T Consensus 269 ~~~ 271 (286)
T PRK14275 269 FTN 271 (286)
T ss_pred HhC
Confidence 764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=353.25 Aligned_cols=200 Identities=28% Similarity=0.486 Sum_probs=169.9
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCC--CCHHHHhcc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN--LKLEWLRSQ 386 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~ 386 (1303)
|+++|++++|+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+++.
T Consensus 1 l~~~~l~~~~~---~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEEC---CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 47899999995 2469999999999999999999999999999999999999999999999999853 345667889
Q ss_pred eEEEeccccccc-HhHHHHHhcCC----CCCHH----HHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHH
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGR----DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~----~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrial 457 (1303)
|+|++|++.+|. .|++||+.++. ..+.+ ++.++++.. |++..+.....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKV-----------GLADKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhhCccccCHHHHHHHHH
Confidence 999999999886 79999998752 22222 223333333 33334445557899999999999
Q ss_pred HHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceE
Q 000751 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRL 522 (1303)
Q Consensus 458 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i 522 (1303)
|||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998875 4799999999999986 4999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=360.71 Aligned_cols=217 Identities=29% Similarity=0.432 Sum_probs=186.0
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP-----TLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 20 ~l~~~nl~~~~~---~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYG---GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeC---CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 699999999995 34699999999999999999999999999999999999863 68999999999864 344
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCC---C---CHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRD---A---TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIK 454 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~---~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqr 454 (1303)
..+|+.|+|++|++.+|+.|+.||+.++.. . .++++.++++.+++.+++. .........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHH
Confidence 567889999999999998899999988631 1 1234455666666654442 22345667899999999
Q ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEe---------CceEee
Q 000751 455 LSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMD---------EGRLFE 524 (1303)
Q Consensus 455 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~---------~G~i~~ 524 (1303)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+. .||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877899999999999886 599999997 899999
Q ss_pred ccChHHHhhc
Q 000751 525 MGTHDELLAT 534 (1303)
Q Consensus 525 ~g~~~~l~~~ 534 (1303)
.|+.+++...
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999998654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=360.59 Aligned_cols=222 Identities=20% Similarity=0.297 Sum_probs=183.5
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCeecCCC-----C
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNL-----K 379 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~-----~ 379 (1303)
-|+++||+++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 489999999995 357999999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHHhcceEEEeccccccc-HhHHHHHhcCCC-C-----------C---HHHHHHHHHHhcchHHHHhcccccCccccCC
Q 000751 380 LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRD-A-----------T---LDQIEEAAKIAHAHTFISSLEKGYETQVGRA 443 (1303)
Q Consensus 380 ~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~~-~-----------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~ 443 (1303)
...+++.++|++|++.+|. .|++||+.++.. . . .+++.++++..++.+ .....
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-----------FAHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-----------HHhCC
Confidence 3566788999999998886 699999987631 1 1 123344444444432 33445
Q ss_pred CCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCc
Q 000751 444 GLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEG 520 (1303)
Q Consensus 444 g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G 520 (1303)
...||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. .|+|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 56899999999999999999999999999999999999999999998875 3799999999999864 59999999999
Q ss_pred eEeeccChHHHhhcChhHHHHHHHH
Q 000751 521 RLFEMGTHDELLATGDLYAELLKCE 545 (1303)
Q Consensus 521 ~i~~~g~~~~l~~~~~~~~~~~~~~ 545 (1303)
++++.|+++++ ......+++...
T Consensus 230 ~i~~~g~~~~~--~~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF--DNERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh--ccHHHHHHHhhh
Confidence 99999999986 233445555443
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=367.65 Aligned_cols=219 Identities=19% Similarity=0.327 Sum_probs=181.7
Q ss_pred cEEEEEEEEEcCCC-CCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCeecCCCCHHHH
Q 000751 308 NIEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT---LGEVLLDGENIKNLKLEWL 383 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~~~~~~ 383 (1303)
-++++|++++|+.. +...+|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 2346999999999999999999999999999999999999996 9999999999998887765
Q ss_pred h----cceEEEecccc--ccc-HhHHHHHhcC----CCCCHHH----HHHHHHHhcchHHHHhcccccCccccCCCCCCC
Q 000751 384 R----SQIGLVTQEPA--LLS-LSIRDNIAYG----RDATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (1303)
Q Consensus 384 ~----~~i~~v~Q~~~--l~~-~ti~~ni~~~----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LS 448 (1303)
+ +.|+||+|+|. ++. .|+.+|+... ...+.++ +.+.++..+ ||++. ..++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChH-HHhcCCcccCC
Confidence 3 47999999983 443 5777776532 1233322 233333333 33332 23566778999
Q ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeec
Q 000751 449 EEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEM 525 (1303)
Q Consensus 449 gGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~ 525 (1303)
||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||.+|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 899999999999986 5999999999999999
Q ss_pred cChHHHhhc
Q 000751 526 GTHDELLAT 534 (1303)
Q Consensus 526 g~~~~l~~~ 534 (1303)
|+.+++.+.
T Consensus 244 g~~~~i~~~ 252 (330)
T PRK09473 244 GNARDVFYQ 252 (330)
T ss_pred CCHHHHHhC
Confidence 999999875
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=360.46 Aligned_cols=211 Identities=25% Similarity=0.373 Sum_probs=182.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCC--------CcEEEECCeecCCCCH
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT--------LGEVLLDGENIKNLKL 380 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~--------~G~i~~~g~~~~~~~~ 380 (1303)
|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78999999994 347999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEecccc-cccHhHHHHHhcCC-CC-------CH---HHHHHHHHHhcchHHHHhcccccCccccCCCCCCC
Q 000751 381 EWLRSQIGLVTQEPA-LLSLSIRDNIAYGR-DA-------TL---DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT 448 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~-l~~~ti~~ni~~~~-~~-------~~---~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LS 448 (1303)
..+++.++||+|++. +|..|++||+.++. .. .. +++.++++.. |+++..+.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCC
Confidence 888888999999986 57889999998863 11 11 1223333333 45555666778999
Q ss_pred hHHHHHHHHHHhhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEE
Q 000751 449 EEQKIKLSIARAVL---------LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAV 516 (1303)
Q Consensus 449 gGqkqrialARal~---------~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~ 516 (1303)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999988753 799999999999886 5999999
Q ss_pred EeCceEeeccChHHHhh
Q 000751 517 MDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 517 l~~G~i~~~g~~~~l~~ 533 (1303)
|++|+|++.|+++++..
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999988865
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=359.65 Aligned_cols=225 Identities=25% Similarity=0.414 Sum_probs=186.4
Q ss_pred cEEEEEEEEEcCCC------CCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHH
Q 000751 308 NIEFRNVYFSYLSR------PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLE 381 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~ 381 (1303)
.|+++||+++|+.. ++.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 134799999999999999999999999999999999999999999999999998765556
Q ss_pred HHhcceEEEecccc--ccc-HhHHHHHhcCC----CCC----HHHHHHHHHHhcch-HHHHhcccccCccccCCCCCCCh
Q 000751 382 WLRSQIGLVTQEPA--LLS-LSIRDNIAYGR----DAT----LDQIEEAAKIAHAH-TFISSLEKGYETQVGRAGLALTE 449 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~~--l~~-~ti~~ni~~~~----~~~----~~~~~~~~~~~~~~-~~i~~l~~g~~t~vg~~g~~LSg 449 (1303)
..++.|+||+|++. ++. .|+.+|+.++. ... ++++.++++.+++. +.. ......|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----------SYYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-----------hcCchhcCH
Confidence 66778999999985 443 58999987531 112 23455666666653 222 223457999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCccccc-cCEEEEEeCceEeecc
Q 000751 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 450 GqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g 526 (1303)
|||||++||||++.+|+||||||||++||+++.+.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998875 37899999999999875 9999999999999999
Q ss_pred ChHHHhhcC--hhHHHHHH
Q 000751 527 THDELLATG--DLYAELLK 543 (1303)
Q Consensus 527 ~~~~l~~~~--~~~~~~~~ 543 (1303)
+++++.... ..+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 999987753 44555654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=351.67 Aligned_cols=200 Identities=24% Similarity=0.406 Sum_probs=169.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 47899999995 3469999999999999999999999999999999999999999999999987753 4677899
Q ss_pred EEeccccccc-HhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
|++|++.++. .|++||+.++. .... +++.+.++.. |++........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERL-----------ELSEYANKRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CChHHHhCcHhhCCHHHHHHHHHHHH
Confidence 9999999886 59999998753 1221 2233333333 33444445567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCcccc-ccCEEEEEeCceEeecc
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g 526 (1303)
++.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998864 5789999999999886 49999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=354.76 Aligned_cols=210 Identities=30% Similarity=0.476 Sum_probs=179.0
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++|+|+ ++++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEEC---CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 47899999995 3469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEeccccccc-HhHHHHHhcCCC---CC----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
||+|++.+|. .|++||+.++.. .+ .+++.++++..++.++ ......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL-----------GDRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH-----------hhCChhhCCHHHHHHHHHHHH
Confidence 9999999996 499999987641 22 1233344444444332 233446899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCccccc-cCEEEEEeCceEeeccChHHHhhc
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
++++|+++||||||++||+++++.+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999988754 7999999999998755 999999999999999999998653
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=373.81 Aligned_cols=210 Identities=26% Similarity=0.444 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCC----CHHHHh
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL----KLEWLR 384 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~~ 384 (1303)
|++ |++++|+ +. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....+
T Consensus 2 l~~-~l~k~~~---~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLG---DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeC---CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 9999994 22 23 99999999999999999999999999999999999999999999998653 234567
Q ss_pred cceEEEeccccccc-HhHHHHHhcCC-CCCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHhhc
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal~ 462 (1303)
++|+||+|++.+|. .|++||+.++. ....+++.++++..++.++..+ ...+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHHH
Confidence 89999999999985 69999999875 3445566777777766554443 34589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhcC
Q 000751 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 463 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999988753 789999999999875 59999999999999999999998764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=359.32 Aligned_cols=217 Identities=30% Similarity=0.467 Sum_probs=185.7
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++|++|+|+ +..+|+|+||++++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 7 ~l~~~nl~~~~~---~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYD---TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeC---CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 699999999995 246999999999999999999999999999999999999985 8999999998853 345
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CC-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+++.++|++|++.+|..|++||+.++. .. + ++++.++++..++.+++.. ..+..+..||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 67788999999999999999999998752 11 2 2334556666665444432 34556778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeC-----ceEee
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDE-----GRLFE 524 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~-----G~i~~ 524 (1303)
||++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998863 4899999999999886 5999999999 99999
Q ss_pred ccChHHHhhc
Q 000751 525 MGTHDELLAT 534 (1303)
Q Consensus 525 ~g~~~~l~~~ 534 (1303)
.|+++++...
T Consensus 237 ~~~~~~~~~~ 246 (261)
T PRK14258 237 FGLTKKIFNS 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999998754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=323.83 Aligned_cols=214 Identities=27% Similarity=0.500 Sum_probs=185.8
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCCHHHhhcceE
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|+|+|||.|+... +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 678999999975 23489999999999999999999999999999999999999999999999998764 567899999
Q ss_pred EEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHH
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARA 1206 (1303)
+++-+.-|+. .|.||||.|+.. +.+ +.++.+..+..++.+.+ |+.+| +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHH
Confidence 9997777775 599999987632 122 23344444555555443 45555 799999999999999
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh-hcCEEEEEeCCEEEEecChHHHhhc
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1207 llr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
|+++|+|++||||||+||..+.+.+++.+.+....|++||+-||-++.++ -||+|+++.+|+++..|+++++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999999998776899999999999998 7999999999999999999999875
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=338.17 Aligned_cols=173 Identities=38% Similarity=0.599 Sum_probs=160.2
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCCC--HHHhhcc
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN--LRWLRNH 1131 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~~--~~~lR~~ 1131 (1303)
|+++|++++|++. ++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~~---~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQK---TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECCe---EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 5789999999642 5999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred eEEEccCCccCc-ccHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHhcC
Q 000751 1132 LGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1132 i~~VpQdp~LF~-gTIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAllr~ 1210 (1303)
++|+||+|.+|. .|++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999999886 4999998763 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCE
Q 000751 1211 APILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGR 1268 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~ 1268 (1303)
|+++||||||++||+.+...+.+.|++..++ ++|+|++||+++.+. .||+|++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999987654 589999999999987 599999999984
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=343.63 Aligned_cols=192 Identities=23% Similarity=0.374 Sum_probs=164.2
Q ss_pred cEEEEeeEEECCCC-CCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhcccc---CCccEEEECCeeCCCCCHHHh
Q 000751 1053 SIELKNVDFCYPSR-PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD---PVAGQVLLDGRDLKLYNLRWL 1128 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~-~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~---~~~G~I~idG~di~~~~~~~l 1128 (1303)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 36899999999853 34579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcceEEEccCCccCcc-cHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHH
Q 000751 1129 RNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVV 1207 (1303)
Q Consensus 1129 R~~i~~VpQdp~LF~g-TIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAl 1207 (1303)
|++++|+||++.+|.+ |++|||.++... . .+ .....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------~------------------~~----~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC------K------------------GN----EFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh------c------------------cc----cchhhCCHHHHHHHHHHHHH
Confidence 8899999999988874 999999865310 0 12 23347999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEec-CchhH-hhcCEEEEEeCCEEEEec
Q 000751 1208 LKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAH-RAAMM-RHVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1208 lr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaH-rl~ti-~~~D~Iivl~~G~Ive~G 1273 (1303)
+++|++|||||||++||+++.+.+.+.+++..++ ++|+|+++| +.+.+ ..||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999987543 467676655 45554 679999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=366.23 Aligned_cols=217 Identities=26% Similarity=0.452 Sum_probs=185.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD-----PTLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 45 ~l~i~nl~~~~~---~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYG---DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 589999999995 3579999999999999999999999999999999999986 689999999999864 345
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCCCC--------------------CHHHHHHHHHHhcchHHHHhcccccCccc
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGRDA--------------------TLDQIEEAAKIAHAHTFISSLEKGYETQV 440 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~--------------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~v 440 (1303)
..+|+.|+||+|++.+|+.||+||+.++... .++++.++++.+++. .++++..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHHh
Confidence 6678899999999999999999999976310 122344444444443 2334556
Q ss_pred cCCCCCCChHHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEE-EEEe
Q 000751 441 GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYI-AVMD 518 (1303)
Q Consensus 441 g~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i-~~l~ 518 (1303)
.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 677889999999999999999999999999999999999999999999999877799999999999976 49997 5779
Q ss_pred CceEeeccChHHHhhc
Q 000751 519 EGRLFEMGTHDELLAT 534 (1303)
Q Consensus 519 ~G~i~~~g~~~~l~~~ 534 (1303)
+|++++.|+++++...
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999988653
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=395.69 Aligned_cols=105 Identities=28% Similarity=0.490 Sum_probs=94.4
Q ss_pred Cccc-ccCCCCCCCChHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchhHh
Q 000751 1181 GYDT-HVGMRGVDLTPGQKQRIAIARVVLKNA---PILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR 1256 (1303)
Q Consensus 1181 Gldt-~vge~G~~LSgGQrQRlaLARAllr~p---~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~ 1256 (1303)
|++. .++.....||||||||++|||||+++| +++||||||++||+++...+.+.|+++...++|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5544 356777899999999999999999999 999999999999999999999999987655789999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChHHHhhcCchh
Q 000751 1257 HVDNIVVL------NGGRIVEEGTHDSLLAKNGLY 1285 (1303)
Q Consensus 1257 ~~D~Iivl------~~G~Ive~Gt~~eLl~~~g~y 1285 (1303)
.||+|++| ++|+|++.|+++++.+..+.|
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999999765433
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=357.27 Aligned_cols=210 Identities=25% Similarity=0.379 Sum_probs=173.4
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCeecCCCCHHHH-hc
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY--DPTLGEVLLDGENIKNLKLEWL-RS 385 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~g~~~~~~~~~~~-~~ 385 (1303)
|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVE---DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEEC---CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 47899999995 346999999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred ceEEEeccccccc-HhHHHHHhcCCC----------CCH----HHHHHHHHHhcchHHHHhcccccCccccCCCC-CCCh
Q 000751 386 QIGLVTQEPALLS-LSIRDNIAYGRD----------ATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGL-ALTE 449 (1303)
Q Consensus 386 ~i~~v~Q~~~l~~-~ti~~ni~~~~~----------~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~-~LSg 449 (1303)
.++||+|++.+|. .|++||+.+... .+. +++.++++..++.+ + ....... .|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~---~~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDE-------E---FLNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCch-------h---hcccccccCcCH
Confidence 6999999999886 589999976421 111 12233333333321 1 1122233 4999
Q ss_pred HHHHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCCccccc--cCEEEEEeCceEeecc
Q 000751 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN--ADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 450 GqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~--~d~i~~l~~G~i~~~g 526 (1303)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998875 47999999999999875 7999999999999999
Q ss_pred ChHHH
Q 000751 527 THDEL 531 (1303)
Q Consensus 527 ~~~~l 531 (1303)
+++++
T Consensus 228 ~~~~~ 232 (243)
T TIGR01978 228 DVELA 232 (243)
T ss_pred CHHHh
Confidence 98754
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=358.51 Aligned_cols=217 Identities=26% Similarity=0.399 Sum_probs=181.2
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT-----LGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~ 380 (1303)
-++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 378999999995 347999999999999999999999999999999999999875 8999999999864 345
Q ss_pred HHHhcceEEEeccccccc-HhHHHHHhcCC---CC-CHHHHHHH----HHHhcchHHHHhcccccCccccCCCCCCChHH
Q 000751 381 EWLRSQIGLVTQEPALLS-LSIRDNIAYGR---DA-TLDQIEEA----AKIAHAHTFISSLEKGYETQVGRAGLALTEEQ 451 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~-~~~~~~~~----~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGq 451 (1303)
..+|+.|+|++|++.+|. .|+.||+.++. .. .+++..+. ++..++.+.+ ++.. .....+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~----~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRL----KTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhh----cCCcccCCHHH
Confidence 567889999999999887 59999998653 11 22322222 2233332222 2222 34456899999
Q ss_pred HHHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCccccc-cCEEEEEeCceEeeccChHH
Q 000751 452 KIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDE 530 (1303)
Q Consensus 452 kqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 530 (1303)
|||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999875 99999999999999999999
Q ss_pred Hhhc
Q 000751 531 LLAT 534 (1303)
Q Consensus 531 l~~~ 534 (1303)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 8764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=347.65 Aligned_cols=201 Identities=25% Similarity=0.420 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++||+++|+ . .++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ..++.++
T Consensus 1 ~~~~~l~~~~~---~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYE---H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeC---C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 36899999994 1 468999999999999999999999999999999999999999999999987643 3577899
Q ss_pred EEeccccccc-HhHHHHHhcCC--C-----CCHHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR--D-----ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~--~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
||+|+|.+|. .|+.||+.++. . ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999886 59999998642 1 12345666777777665554444 3799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCCcccc-ccCEEEEEeCceEeeccC
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGT 527 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~ 527 (1303)
++++|+++||||||++||+++.+.+.+.|.++. .++|+|++||+++.+. .||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998875 3789999999999876 599999999999998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=355.22 Aligned_cols=217 Identities=26% Similarity=0.444 Sum_probs=183.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC------eecCCCCHH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG------ENIKNLKLE 381 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g------~~~~~~~~~ 381 (1303)
.|+++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++...+..
T Consensus 10 ~i~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIN---DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecC---CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 589999999995 35799999999999999999999999999999999999999997666655 666666777
Q ss_pred HHhcceEEEecccccccH-hHHHHHhcCC---CC-CHHH----HHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 382 WLRSQIGLVTQEPALLSL-SIRDNIAYGR---DA-TLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 382 ~~~~~i~~v~Q~~~l~~~-ti~~ni~~~~---~~-~~~~----~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
.+|+.++|++|++.+|.+ |+.||+.++. .. .+++ +.++++..++++++ .......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 889999999999999864 9999999753 11 2222 34444444443322 1223456778999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++||||++++|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 5999999999999999999998
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
.+.
T Consensus 240 ~~~ 242 (257)
T PRK14246 240 FTS 242 (257)
T ss_pred HhC
Confidence 765
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=357.35 Aligned_cols=217 Identities=27% Similarity=0.413 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC--C---CCcEEEECCeecCC--CCH
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD--P---TLGEVLLDGENIKN--LKL 380 (1303)
Q Consensus 308 ~i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~ 380 (1303)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYG---KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEEC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 489999999995 3579999999999999999999999999999999999875 5 58999999998864 344
Q ss_pred HHHhcceEEEecccccccHhHHHHHhcCC---CC-C----HHHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHH
Q 000751 381 EWLRSQIGLVTQEPALLSLSIRDNIAYGR---DA-T----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 381 ~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~---~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqk 452 (1303)
..+++.|+||+|++.+|..|+++|+.++. .. . ++++.++++.+++.+.+ ..........||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 56778999999999999999999998752 11 1 12334444555443222 2234456678999999
Q ss_pred HHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHH
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDEL 531 (1303)
Q Consensus 453 qrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 531 (1303)
||++||||++++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+..+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999986 5999999999999999998887
Q ss_pred hhc
Q 000751 532 LAT 534 (1303)
Q Consensus 532 ~~~ 534 (1303)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=323.59 Aligned_cols=212 Identities=26% Similarity=0.433 Sum_probs=182.7
Q ss_pred EEEEEEEEEcCCCCCCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCeecCCCCHHHHhcceE
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~f~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
+++.+++++|++ ...+++||||+++.|++++|.|||||||||+++.|..++.|++|.|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678999999963 3458999999999999999999999999999999999999999999999999876 4567889999
Q ss_pred EEecccccc-cHhHHHHHhcCC---CCCH----HHHHHHHHHhcchHHHHhcccccCccccCCCCCCChHHHHHHHHHHh
Q 000751 389 LVTQEPALL-SLSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~-~~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~vg~~g~~LSgGqkqrialARa 460 (1303)
+++-+.-|+ ..|++|||.|.. +... .++.+..+.-++.+. +..+..++|-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-----------~~rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-----------LDRRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-----------HHHHHhhhchhhHHHHHHHHH
Confidence 999887787 479999999642 3332 334444444444443 334455799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCCcccc-ccCEEEEEeCceEeeccChHHHhhc
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLML-GRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 461 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~-~~t~i~ith~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
|.+||++++||||||+||..+.+.+.+.+.+++. |+++|+.||.++.++ .||+|+++.+|+++..|+.+++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999988875 999999999999998 5999999999999999999998764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=346.84 Aligned_cols=202 Identities=26% Similarity=0.416 Sum_probs=169.4
Q ss_pred EEEEeeEEECCCCCCcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCccEEEECCeeCCCC----CHHHhh
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY----NLRWLR 1129 (1303)
Q Consensus 1054 I~~~~Vsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G~I~idG~di~~~----~~~~lR 1129 (1303)
+++ ||+++|++. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.++|.++... +...+|
T Consensus 2 ~~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 2 LCV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred cee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 355 899999753 24 99999999 99999999999999999999999999999999999998643 234578
Q ss_pred cceEEEccCCccCc-ccHHHHHHcCCCCCC----HHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHH
Q 000751 1130 NHLGLVQQEPIIFS-TTIRENIIYARHNAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~-gTIreNl~~g~~~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLA 1204 (1303)
++++|+||++.+|+ .|++||+.++..... ++++.++++..++.+ ........||||||||++||
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVALA 143 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHHHH
Confidence 89999999999996 599999987543212 223444555554433 33445568999999999999
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCchhHh-hcCEEEEEeCCEEEEec
Q 000751 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEG 1273 (1303)
Q Consensus 1205 RAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~~D~Iivl~~G~Ive~G 1273 (1303)
||++++|++|||||||++||+++.+.+.+.|++...+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999987543 689999999999875 59999999999999876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=352.49 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=170.7
Q ss_pred EEEEEEEEEcCCCC-CCCcccceeEEeeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCeecCCCCHHHHh
Q 000751 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD---PTLGEVLLDGENIKNLKLEWLR 384 (1303)
Q Consensus 309 i~~~~v~f~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~~ 384 (1303)
++|+||+|+|++.+ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997532 3679999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEecccccccH-hHHHHHhcCCC-CCHHHHHHHHHHhcchH-HHHhcccccCccccCCCCCCChHHHHHHHHHHhh
Q 000751 385 SQIGLVTQEPALLSL-SIRDNIAYGRD-ATLDQIEEAAKIAHAHT-FISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~-~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~vg~~g~~LSgGqkqrialARal 461 (1303)
+.|+|++|++.+|.+ |++||+.++.. .......+.......+. .+..+ |+..........||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 899999999999976 99999987531 10000000001001111 22222 333334455678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCC-ccc-cccCEEEEEeCceEeecc
Q 000751 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRL-SLI-RNADYIAVMDEGRLFEMG 526 (1303)
Q Consensus 462 ~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~-~~~-~~~d~i~~l~~G~i~~~g 526 (1303)
+++|++|||||||++||+.+...+.+.+.++. +++|+|++||++ ..+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998874 478999999998 354 569999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=340.27 Aligned_cols=183 Identities=25% Similarity=0.454 Sum_probs=162.7
Q ss_pred cEEEEeeEEECCCCC-CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccc--cCCccEEEECCeeCCCCCHHHhh
Q 000751 1053 SIELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY--DPVAGQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~--~~~~G~I~idG~di~~~~~~~lR 1129 (1303)
.|+++|++++|++.. +.++|+|+||+|++||+++|+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 589999999997421 236999999999999999999999999999999999986 489999999999886 5678
Q ss_pred cceEEEccCCccCcc-cHHHHHHcCCCCCCHHHHHHHHHHhchHHHHHhCCCCcccccCCCCCCCChHHHHHHHHHHHHh
Q 000751 1130 NHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1130 ~~i~~VpQdp~LF~g-TIreNl~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSgGQrQRlaLARAll 1208 (1303)
++++|++|+|.+|.+ |++||+.++.. ++ +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 899999999988875 99999986320 00 79999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCCcEEEEEecCchh--HhhcCEEEEEeC-CEEEEec
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAM--MRHVDNIVVLNG-GRIVEEG 1273 (1303)
Q Consensus 1209 r~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~t--i~~~D~Iivl~~-G~Ive~G 1273 (1303)
++|++|||||||++||+++.+.+.+.|++....++|+|+|||+++. ...||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999875556999999999983 567999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=339.86 Aligned_cols=219 Identities=31% Similarity=0.520 Sum_probs=192.6
Q ss_pred cEEEEeeEEECCCCC---------------------CcceeeeeeEEeeCCCEEEEEcCCCCChHHHHHHHhccccCCcc
Q 000751 1053 SIELKNVDFCYPSRP---------------------EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111 (1303)
Q Consensus 1053 ~I~~~~Vsf~Y~~~~---------------------~~~vL~~isl~I~~Ge~vaIVG~sGSGKSTL~~lL~rl~~~~~G 1111 (1303)
.|+++||+.-+..++ ...-++|+||+|+.||+..|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 578888888775432 11358999999999999999999999999999999999999999
Q ss_pred EEEECCeeCCCCCHHHhh----cceEEEccCCccCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhchHHHHHhCCC
Q 000751 1112 QVLLDGRDLKLYNLRWLR----NHLGLVQQEPIIFS-TTIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPH 1180 (1303)
Q Consensus 1112 ~I~idG~di~~~~~~~lR----~~i~~VpQdp~LF~-gTIreNl~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~ 1180 (1303)
+|++||.||..++.+.|| +++++|+|..-||+ -||.||..||.. ..+ .+...++++.+||.+|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999988774 57999999999997 599999999853 122 3456788999999999888775
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-CcEEEEEecCch-hHhhc
Q 000751 1181 GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAA-MMRHV 1258 (1303)
Q Consensus 1181 Gldt~vge~G~~LSgGQrQRlaLARAllr~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~-ti~~~ 1258 (1303)
+||||+|||+.|||||..+|+|||+|||.|||||--...+|+.|.++.++ .||+++|||+|+ .++--
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 79999999999999999999999999999999999999999988765322 589999999997 57789
Q ss_pred CEEEEEeCCEEEEecChHHHhhcC
Q 000751 1259 DNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1259 D~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
|||..|++|+|+..|||+|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999999763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1303 | ||||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-151 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-73 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-102 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-102 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-74 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-66 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-73 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 7e-66 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-58 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-55 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-58 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-56 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-57 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-49 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-54 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-46 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-54 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-53 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 9e-49 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-35 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-48 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-35 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-48 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-35 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-48 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-35 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 7e-48 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-34 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 7e-48 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-34 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-48 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-35 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-46 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-38 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-45 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-41 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-45 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-32 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-41 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-35 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-41 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-33 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-41 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-32 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-40 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-31 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-40 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-35 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-19 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-15 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-14 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 5e-10 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-14 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 5e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-14 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 7e-14 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-09 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 7e-14 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-09 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-13 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-13 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-05 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 7e-13 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-12 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 7e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-05 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-11 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-04 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-11 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-11 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-11 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-11 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-09 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-11 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 8e-08 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-11 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-11 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-07 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 6e-11 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 5e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 8e-11 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 7e-07 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-10 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 6e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-06 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 6e-10 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-04 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-04 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-07 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-05 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 8e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 9e-07 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-06 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 7e-04 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-05 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 3e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 7e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 8e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-04 |
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1303 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-179 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-156 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-134 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-154 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-131 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-146 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-124 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-138 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-119 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-123 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-110 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-123 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-112 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-118 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-106 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-117 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 2e-99 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-109 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-98 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-98 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-79 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-50 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 8e-45 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-44 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-31 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 9e-44 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 8e-29 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-43 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-26 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-36 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-28 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-35 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-27 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-31 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-26 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-30 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-27 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-27 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-24 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-10 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-26 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-13 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-26 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-21 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 6e-26 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-15 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-25 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-14 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 8e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-19 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-23 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-15 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-23 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-13 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 7e-22 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-22 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 7e-20 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-21 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-21 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-20 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-15 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-18 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-17 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-18 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-17 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-17 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 5e-10 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-17 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-16 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-16 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-14 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 3e-13 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 8e-14 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-13 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 8e-13 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 7e-11 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 7e-04 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-10 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 6e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-08 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 9e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 6e-06 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 8e-07 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 6e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 8e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 9e-05 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-05 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 766 bits (1980), Expect = 0.0
Identities = 224/652 (34%), Positives = 347/652 (53%), Gaps = 5/652 (0%)
Query: 645 RLPELPKIDVHSSNRQTSNGSDPESPISPL--LTSDPKNERSHSQTFSRPHSHSDDFPTK 702
+L + S E + S R S S H D
Sbjct: 620 KLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLS 679
Query: 703 VREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPE 762
+E + SFWR+ +L+ EW Y V+G A I G P + + +V +
Sbjct: 680 TKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGG 739
Query: 763 ERHHLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGW 822
R+ N + L+ +G+++ + FLQ F FG GE +T+R+R M+F +MLR +V W
Sbjct: 740 PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSW 799
Query: 823 FDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALA 882
FD+ +N+ L+ RLANDA V+ A +RL++ Q+ A + +II ++ W+L L+ LA
Sbjct: 800 FDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLA 859
Query: 883 TLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQ 942
+PI++++ + + L+G + +K + + +A+ N TVV+ K +Y
Sbjct: 860 IVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQS 919
Query: 943 LKKIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSF 1002
L+ + + G F F+Q +++ A + V M L + F
Sbjct: 920 LQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVF 979
Query: 1003 ATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFC 1062
A+ + AP K S + II++ P+ID + +KP + G+++ V F
Sbjct: 980 GAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFN 1039
Query: 1063 YPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKL 1122
YP+RP + VL SL+V GQT+A+VG SG GKST++ L+ERFYDP+AG V LDG+++K
Sbjct: 1040 YPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099
Query: 1123 YNLRWLRNHLGLVQQEPIIFSTTIRENIIYAR--HNASEAEVKEAARIANAHHFISSLPH 1180
N++WLR LG+V QEPI+F +I ENI Y S E+ AA+ AN H FI SLP
Sbjct: 1100 LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
Query: 1181 GYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIM 1240
Y+T VG +G L+ GQKQRIAIAR +++ ILLLDEA+S++++ES +VVQEALD
Sbjct: 1160 KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-R 1218
Query: 1241 GNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPH 1292
+T I+IAHR + +++ D IVV+ G++ E GTH LLA+ G+Y ++
Sbjct: 1219 EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ 1270
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 681 bits (1760), Expect = 0.0
Identities = 204/588 (34%), Positives = 314/588 (53%), Gaps = 4/588 (0%)
Query: 29 LSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNG 88
++ A Y I GV +I+VS W L RQ IR ++ ++NQ++ +FD + G
Sbjct: 107 MTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDV-G 165
Query: 89 DIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAG 148
++ +++ DV I + +K+G + MATFF G I F W++ L+ L P + +
Sbjct: 166 ELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSA 225
Query: 149 GISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGI 208
GI L + AYA+A ++AE+ ++ IRT+ AF + Y +L+ R GI
Sbjct: 226 GIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGI 285
Query: 209 LISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAA 268
++ + +G + L S AL W G LV + G+++T F+V++ + QA+
Sbjct: 286 KKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQAS 345
Query: 269 TNFYSFDQGRIAAYRLYEMISRSSSTTNY--DGNTLPSVHGNIEFRNVYFSYLSRPEIPI 326
N +F R AAY ++++I S ++ G+ ++ GN+EF+N++FSY SR E+ I
Sbjct: 346 PNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI 405
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
L G L V + + VALVG +G GKS+ + LM+R YDP G V +DG++I+ + + +LR
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 387 IGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGL 445
IG+V+QEP L + +I +NI YGR D T+D+IE+A K A+A+ FI L ++T VG G
Sbjct: 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525
Query: 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRL 505
L+ QK +++IARA++ NP ILLLDE T LD E+E VQ ALD GR+TI+IA RL
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRL 585
Query: 506 SLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTF 565
S +RNAD IA D G + E G HDEL+ +Y +L+ + A +
Sbjct: 586 STVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEID 645
Query: 566 QIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVL 613
++ S S S T A D P
Sbjct: 646 NLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASF 693
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 640 bits (1652), Expect = 0.0
Identities = 209/621 (33%), Positives = 328/621 (52%), Gaps = 26/621 (4%)
Query: 691 RPHSHSDDFPTKVREEESKHQKAP--SFWRLAELSFA---EWLYAVLGSIGAAIFGSFNP 745
+ + + + ++ K +K P S + +A + LY ++G++ A I G P
Sbjct: 8 KGRADKNFSKMGKKSKKEKKEKKPAVSVLTM--FRYAGWLDRLYMLVGTLAAIIHGVALP 65
Query: 746 LLAYVIGLIVTAY----------------YKPEERHHLREEVNKWCLIIACMGVVTVVAN 789
L+ + G + ++ K L EE+ + +G ++
Sbjct: 66 LMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVA 125
Query: 790 FLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFS 849
++Q ++ + + ++R+ F A++ E+GWFD + L+ RL +D + +
Sbjct: 126 YIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIG 183
Query: 850 NRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMH 909
+++ +F Q A IIG W+L LV LA P+L LSA L+ F+ +
Sbjct: 184 DKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAY 243
Query: 910 RKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLF 969
KA V E+ + I TV+AF K +E Y L++ + + G + L++
Sbjct: 244 AKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIY 303
Query: 970 ACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFE 1029
A AL WY V + L + F++ + R + VF+
Sbjct: 304 ASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFK 363
Query: 1030 IIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVG 1089
IID P ID S KP N+ G++E KN+ F YPSR EV +L +LKV GQTVA+VG
Sbjct: 364 IIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423
Query: 1090 VSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIREN 1149
SG GKST + L++R YDP+ G V +DG+D++ N+R+LR +G+V QEP++F+TTI EN
Sbjct: 424 NSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483
Query: 1150 IIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209
I Y R + + E+++A + ANA+ FI LPH +DT VG RG L+ GQKQRIAIAR +++
Sbjct: 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543
Query: 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRI 1269
N ILLLDEA+S++++ES VVQ ALD +TTI+IAHR + +R+ D I +GG I
Sbjct: 544 NPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 1270 VEEGTHDSLLAKNGLYVRLMQ 1290
VE+G HD L+ + G+Y +L+
Sbjct: 603 VEQGNHDELMREKGIYFKLVM 623
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 563 bits (1452), Expect = e-179
Identities = 178/523 (34%), Positives = 282/523 (53%), Gaps = 6/523 (1%)
Query: 33 ALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNN-GDIV 91
+L + + F +++ + GE T +R + +L QD+S+FD N G +
Sbjct: 752 SLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALT 811
Query: 92 SQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGIS 151
+++ +D ++ A ++ N+A +G+ I+ + WQ+ L+ L P I AG +
Sbjct: 812 TRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVE 871
Query: 152 NIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211
L A + + IA +A+ RT+ + T E + YA SLQ R + +
Sbjct: 872 MKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKA 931
Query: 212 LVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNF 271
V G+ FT + S A G +LVT ++ A++ + + Q ++
Sbjct: 932 HVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFA 991
Query: 272 YSFDQGRIAAYRLYEMISRSSSTTNYD--GNTLPSVHGNIEFRNVYFSYLSRPEIPILSG 329
+ + ++A + +I ++ +Y G + GN++F V F+Y +RP IP+L G
Sbjct: 992 PDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQG 1051
Query: 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGL 389
L V + +ALVG +G GKS+++ L+ERFYDP G V LDG+ IK L ++WLR+Q+G+
Sbjct: 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111
Query: 390 VTQEPALLSLSIRDNIAYGRD---ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLA 446
V+QEP L SI +NIAYG + + ++I AAK A+ H FI SL Y T+VG G
Sbjct: 1112 VSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ 1171
Query: 447 LTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLS 506
L+ QK +++IARA++ P ILLLDE T LD E+E+ VQEALD GR+ I+IA RLS
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231
Query: 507 LIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAK 549
I+NAD I V+ G++ E GTH +LLA +Y ++ + AK
Sbjct: 1232 TIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAK 1274
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 480 bits (1239), Expect = e-156
Identities = 173/583 (29%), Positives = 295/583 (50%), Gaps = 22/583 (3%)
Query: 715 SFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKW 774
+F RL ++ I + + + + ++ ++ + +R L
Sbjct: 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL----LWM 67
Query: 775 CLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLS 834
L++ + ++ + +++ + + K+ +RR +F M+ V +FD++ ++ LS
Sbjct: 68 PLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLS 126
Query: 835 MRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQ 894
R+ D+ V ++ S L +++ A++I I+ W+L+++ + PI+S++
Sbjct: 127 -RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVV 185
Query: 895 KLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHG 954
S+ +Q + + E ++ V+ F + + K+ +
Sbjct: 186 SKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245
Query: 955 MAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFG-L 1013
A + Q + A +L+ + T V + AL+ P L
Sbjct: 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGT----ITVVFSSMIALMRPLKSL 301
Query: 1014 APYILKRRKSLIS---VFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVL 1070
+ ++ + + +F I+D + D G +E +NV F YP R EV
Sbjct: 302 TNVNAQFQRGMAACQTLFAILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVP 357
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
L N +LK+ G+TVA+VG SGSGKSTI SLI RFYD G +L+DG DL+ Y L LRN
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 417
Query: 1131 HLGLVQQEPIIFSTTIRENIIYAR-HNASEAEVKEAARIANAHHFISSLPHGYDTHVGMR 1189
+ LV Q +F+ T+ NI YAR S +++EAAR+A A FI+ + +G DT +G
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN 477
Query: 1190 GVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIA 1249
GV L+ GQ+QRIAIAR +L+++PIL+LDEA+S++++ES R +Q ALD L N+T+++IA
Sbjct: 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNRTSLVIA 536
Query: 1250 HRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL--MQ 1290
HR + + D IVV+ G IVE GTH LLA++G+Y +L MQ
Sbjct: 537 HRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 421 bits (1085), Expect = e-134
Identities = 152/512 (29%), Positives = 259/512 (50%), Gaps = 7/512 (1%)
Query: 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIV 91
L + + I G+ +I C + +R R ++ ++FFD + G ++
Sbjct: 69 LVVIGLMILRGIT--SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLL 125
Query: 92 SQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGIS 151
S++ D + S+ S + + A+ + F WQ+++I + P + A +
Sbjct: 126 SRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVV 185
Query: 152 NIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILIS 211
+ +++N+Q+ + + AEQ + + + F + + + G+ +
Sbjct: 186 SKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245
Query: 212 LVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNF 271
+ +A + A L+ F + G I ++I L
Sbjct: 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 305
Query: 272 YSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFY 331
F +G A L+ ++ + G++EFRNV F+Y R E+P L
Sbjct: 306 AQFQRGMAACQTLFAILDSEQEKDE-GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNIN 363
Query: 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVT 391
L +PA K VALVGR+GSGKS+I L+ RFYD G +L+DG +++ L LR+Q+ LV+
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423
Query: 392 QEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTE 449
Q L + ++ +NIAY R + + +QIEEAA++A+A FI+ ++ G +T +G G+ L+
Sbjct: 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483
Query: 450 EQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIR 509
Q+ +++IARA+L + IL+LDE T LD E+ERA+Q ALD L R++++IA RLS I
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 510 NADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
AD I V+++G + E GTH ELLA +YA+L
Sbjct: 544 QADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 475 bits (1224), Expect = e-154
Identities = 164/600 (27%), Positives = 285/600 (47%), Gaps = 38/600 (6%)
Query: 706 EESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERH 765
S +F RL V+ +I I + + + ++ ++ + E +
Sbjct: 3 LHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESN 62
Query: 766 HLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDE 825
L +I + V ++ F + + + ++RR +F+ + V +FD+
Sbjct: 63 FL----RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ 118
Query: 826 EENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLP 885
E ++ LS R+ D+ V A S L +++ A++I + + W+L+LV + P
Sbjct: 119 E-STGGLLS-RITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAP 176
Query: 886 ILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKK 945
+++ + SR +Q + E ++ V+++ + +
Sbjct: 177 VVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNS 236
Query: 946 IFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATF 1005
+ ++ A A Q + +L+ + T + V A F
Sbjct: 237 MRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGT----FTVVFSAMF 292
Query: 1006 ALVEPF------------GLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGS 1053
L+ P G+A + ++F ++D + D + V G
Sbjct: 293 GLMRPLKALTSVTSEFQRGMA--------ACQTLFGLMDLETERDNG---KYEAERVNGE 341
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+++K+V F Y + E LS+ S + G+TVA+VG SGSGKSTI +L RFYD +G +
Sbjct: 342 VDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA-RHNASEAEVKEAARIANAH 1172
LDG D++ Y L LR H LV Q +F+ TI NI YA + ++++AAR A+A
Sbjct: 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAM 460
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
FI ++P G DT +G G L+ GQ+QR+AIAR +L++AP+L+LDEA+S++++ES R +Q
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520
Query: 1233 EALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL--MQ 1290
ALD L NKT ++IAHR + + D I+V++ G I+E G H LLA++G Y +L +Q
Sbjct: 521 AALDEL-QKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 413 bits (1064), Expect = e-131
Identities = 145/517 (28%), Positives = 250/517 (48%), Gaps = 7/517 (1%)
Query: 27 VWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGN 86
+ + + + G+ G+ C +R R ++ + FFD +
Sbjct: 64 LRILPFMILGLMFVRGLS--GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-S 120
Query: 87 NGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVA 146
G ++S++ D + A S + + + A+ L + F N WQ++L+ + P +
Sbjct: 121 TGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAF 180
Query: 147 AGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRY 206
A + +++ N+Q A S AEQ + + + ++ + + + + + +
Sbjct: 181 AISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQ 240
Query: 207 GILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQ 266
+ + Q + +A + L++ + G A+ L
Sbjct: 241 TMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKA 300
Query: 267 AATNFYSFDQGRIAAYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPI 326
+ F +G A L+ ++ + N V+G ++ ++V F+Y E P
Sbjct: 301 LTSVTSEFQRGMAACQTLFGLMDLETERDN-GKYEAERVNGEVDVKDVTFTY-QGKEKPA 358
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
LS ++P K VALVGR+GSGKS+I L RFYD G + LDG ++++ KL LR
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 387 IGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAG 444
LV+Q L + +I +NIAY + T +QIE+AA+ AHA FI ++ +G +T +G G
Sbjct: 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENG 478
Query: 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARR 504
+L+ Q+ +++IARA+L + +L+LDE T LD E+ERA+Q ALD L ++ ++IA R
Sbjct: 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538
Query: 505 LSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
LS I AD I V+DEG + E G H +LLA YA+L
Sbjct: 539 LSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 453 bits (1169), Expect = e-146
Identities = 172/573 (30%), Positives = 274/573 (47%), Gaps = 18/573 (3%)
Query: 727 WLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTV 786
I I L+ +I + + + I + + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 787 V---ANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATF 843
V F++ + K+ +R+ +++ + ++ +S R+ ND
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVIS-RVINDVEQ 130
Query: 844 VRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSR 903
+ L D +I+A+ I L+ +L L AL P L+ L +R
Sbjct: 131 TKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTR 190
Query: 904 GIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGF 963
+ + L + V+ I V +F + + + + T++ H ++F
Sbjct: 191 ERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAA 250
Query: 964 SQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFG-LAPYILKRRK 1022
+ +++ G + + T F L P L +
Sbjct: 251 INTVTDIGPIIVIGVGAYLAISGSITVGT----LAAFVGYLELLFGPLRRLVASFTTLTQ 306
Query: 1023 SLIS---VFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKV 1079
S S VF++ID I + A G I++ +V F Y E +L + +L +
Sbjct: 307 SFASMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSI 364
Query: 1080 NGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEP 1139
G+TVA VG+SG GKST+I+LI RFYD +GQ+L+DG ++K + LRN +GLVQQ+
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN 424
Query: 1140 IIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199
I+FS T++ENI+ R A++ EV EAA++ANAH FI +LP GYDT VG RGV L+ GQKQ
Sbjct: 425 ILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484
Query: 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVD 1259
R++IAR+ L N PIL+LDEA+S+++ ES ++QEALD L ++TT+++AHR + + H D
Sbjct: 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITHAD 543
Query: 1260 NIVVLNGGRIVEEGTHDSLLAKNGLYVRL--MQ 1290
IVV+ G IVE GTH L+AK G Y L +Q
Sbjct: 544 KIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-124
Identities = 161/540 (29%), Positives = 250/540 (46%), Gaps = 6/540 (1%)
Query: 4 LKYIWGFPVPKFVDCLVVAFGVEVWLSELALYIVYIAGGVFAAGWIEVSCWILTGERQTA 63
+KY + +AL+I I +I T +
Sbjct: 37 IKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPI--EFIRQYLAQWTSNKILY 94
Query: 64 VIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGL 123
IR + L F+ G ++S+V++DV + + + N + T L
Sbjct: 95 DIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIAL 153
Query: 124 AIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTL 183
+I F ++ L L PF + + L +L A AE + V I +
Sbjct: 154 SIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVV 213
Query: 184 YAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHN 243
+F E ++ L + + + + + VG +L
Sbjct: 214 KSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISG 273
Query: 244 KAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDG-NTL 302
G + + + L L + +F + Q + R++++I N G +
Sbjct: 274 SITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPI 333
Query: 303 PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362
G I+ +V F Y E PIL L++ + VA VG +G GKS++I L+ RFYD
Sbjct: 334 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392
Query: 363 PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAK 421
T G++L+DG NIK+ LR+QIGLV Q+ L S ++++NI GR AT +++ EAAK
Sbjct: 393 VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAK 452
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
+A+AH FI +L +GY+T+VG G+ L+ QK +LSIAR L NP IL+LDE T LD E+
Sbjct: 453 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 482 ERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
E +QEALD+L R+T+I+A RLS I +AD I V++ G + E GTH EL+A Y L
Sbjct: 513 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 420 bits (1081), Expect = e-138
Identities = 88/262 (33%), Positives = 145/262 (55%), Gaps = 3/262 (1%)
Query: 1037 IDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKS 1096
+ P S + P N+ G ++ ++V F YP+ P V VL + + G+ A+VG +GSGKS
Sbjct: 1 MSPLSGS-LAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 1097 TIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARH- 1155
T+ +L++ Y P G+VLLDG L Y+ +L + V QEP++F + RENI Y
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 1156 NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILL 1215
+ E+ A + AH FIS P GYDT VG G L+ GQ+Q +A+AR +++ +L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 1216 LDEASSSIESESSRVVQEALDTLI-MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274
LD A+S++++ + VQ L ++T +LI + ++ +I+ L G + E+GT
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 1275 HDSLLAKNGLYVRLMQPHYGKG 1296
H L+ + G Y +++
Sbjct: 240 HLQLMERGGCYRSMVEALAAPS 261
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 370 bits (952), Expect = e-119
Identities = 90/250 (36%), Positives = 141/250 (56%), Gaps = 4/250 (1%)
Query: 298 DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357
++ G ++F++V F+Y + P + +L G T+ K ALVG NGSGKS++ L+
Sbjct: 6 GSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Query: 358 ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQ 415
+ Y PT G+VLLDGE + +L +Q+ V QEP L S R+NIAYG T+++
Sbjct: 66 QNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEE 125
Query: 416 IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTG 475
I A + AH FIS +GY+T+VG G L+ Q+ +++ARA++ P +L+LD T
Sbjct: 126 ITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATS 185
Query: 476 GLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA 533
LD + VQ L R+ ++I ++LSL A +I + EG + E GTH +L+
Sbjct: 186 ALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
Query: 534 TGDLYAELLK 543
G Y +++
Sbjct: 246 RGGCYRSMVE 255
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 381 bits (981), Expect = e-123
Identities = 92/240 (38%), Positives = 147/240 (61%), Gaps = 6/240 (2%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ ++VDF Y ++L + S + +A G SG GKSTI SL+ERFY P AG++
Sbjct: 2 LSARHVDFAYDDSEQIL--RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIY-ARHNASEAEVKEAARIANAH 1172
+DG+ + +L R+ +G V Q+ I + TIREN+ Y + ++ ++ + +A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
F+ ++P +T VG RGV ++ GQ+QR+AIAR L+N IL+LDEA++S++SES +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1233 EALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL--MQ 1290
+ALD+L M +TT++IAHR + + D I + G+I G H+ L+A + LY + Q
Sbjct: 180 KALDSL-MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-110
Identities = 98/235 (41%), Positives = 147/235 (62%), Gaps = 4/235 (1%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ R+V F+Y IL +A G +G GKS+I L+ERFY PT GE+
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAH 426
+DG+ I N+ LE RSQIG V+Q+ A+++ +IR+N+ YG D T + + + +A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
+F+ ++ T+VG G+ ++ Q+ +L+IARA L NP IL+LDE T LD E+E VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 487 EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
+ALD LM GR+T++IA RLS I +AD I +++G++ G H+EL+AT LYA+
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY 234
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-123
Identities = 101/243 (41%), Positives = 152/243 (62%), Gaps = 3/243 (1%)
Query: 1049 NVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDP 1108
+ + I +N+ F Y V +L N +L + G+ + +VG SGSGKST+ LI+RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 1109 VAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARI 1168
GQVL+DG DL L + WLR +G+V Q+ ++ + +I +NI A S +V AA++
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 1169 ANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESS 1228
A AH FIS L GY+T VG +G L+ GQ+QRIAIAR ++ N IL+ DEA+S+++ ES
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 1229 RVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVR 1287
V+ + + +T I+IAHR + +++ D I+V+ G+IVE+G H LL++ LY
Sbjct: 182 HVIMRNMHKI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 1288 LMQ 1290
L Q
Sbjct: 241 LYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 350 bits (901), Expect = e-112
Identities = 100/239 (41%), Positives = 151/239 (63%), Gaps = 3/239 (1%)
Query: 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
H +I FRN+ F Y IL L++ + + +VGR+GSGKS++ L++RFY P
Sbjct: 4 HHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIA 423
G+VL+DG ++ WLR Q+G+V Q+ LL+ SI DNI+ +++++ AAK+A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 122
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
AH FIS L +GY T VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 484 AVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD-LYAEL 541
+ + + GR+ IIIA RLS ++NAD I VM++G++ E G H ELL+ + LY+ L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 367 bits (945), Expect = e-118
Identities = 99/253 (39%), Positives = 161/253 (63%), Gaps = 4/253 (1%)
Query: 1040 DDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTII 1099
S +IE +V+F YP + L + + + G T A+VG +GSGKSTI
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 1100 SLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASE 1159
L+ RFYD G + + G+++ YN +R+ +G+V Q+ I+F+ TI+ NI+Y + +A++
Sbjct: 64 KLLYRFYD-AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122
Query: 1160 AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
EV +A + A + FI +LP +DT VG +G+ L+ G++QRIAIAR +LK+ I++ DEA
Sbjct: 123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182
Query: 1220 SSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
+SS++S++ + Q+A++ L N+T I+IAHR + + ++I++LN G+IVE+GTH LL
Sbjct: 183 TSSLDSKTEYLFQKAVEDL-RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241
Query: 1280 AKNGLYVRL--MQ 1290
NG Y + MQ
Sbjct: 242 KLNGEYAEMWNMQ 254
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 333 bits (857), Expect = e-106
Identities = 91/241 (37%), Positives = 143/241 (59%), Gaps = 2/241 (0%)
Query: 302 LPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361
NIEF +V FSY + L +P+ ALVG GSGKS+I L+ RFY
Sbjct: 11 EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70
Query: 362 DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAA 420
D G++ + G+N+ +RS IG+V Q+ L + +I+ NI YG+ DAT +++ +A
Sbjct: 71 DAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKAT 129
Query: 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
K A + FI +L K ++T VG G+ L+ ++ +++IAR +L +P I++ DE T LD +
Sbjct: 130 KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189
Query: 481 AERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540
E Q+A++ L R+ IIIA RLS I +A+ I ++++G++ E GTH +LL YAE
Sbjct: 190 TEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAE 249
Query: 541 L 541
+
Sbjct: 250 M 250
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 376 bits (968), Expect = e-117
Identities = 168/603 (27%), Positives = 283/603 (46%), Gaps = 52/603 (8%)
Query: 706 EESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERH 765
K+ + RL ++ + + L Y+IG + + P
Sbjct: 16 PALKNPT-ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFD 74
Query: 766 HLREEVNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDE 825
L ++ LI+ + +T + +LQ + + + R+R+ +F + R VG+FD
Sbjct: 75 LL----PRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR 130
Query: 826 EENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGML-LEWRLALVALATL 884
+ D +S R+ ND + N + F + +I M + L+LV L+ +
Sbjct: 131 TPH-GDIIS-RVINDVDNINNVLGNSIIQFFS-GIVTLAGAVIMMFRVNVILSLVTLSIV 187
Query: 885 PILSLSAIAQKLWLAGFSRGIQKMHRKASLVL-------EDAVRNIYTVVAFCAGNKVME 937
P+ L ++ + +K + VL E+ + + + F K ME
Sbjct: 188 PLTVLITQ----IVSSQT---RKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEME 240
Query: 938 LYRLQLKKIFTKSFLHGMAIGFAFGFSQFLLFACN---ALLLWYTGKSVRDGYMDLPTAL 994
+ + + A F+ + N AL+ + G + + T
Sbjct: 241 KFDRVNESLRKVGT---KAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGT-- 295
Query: 995 KEYMVFSFATFA--LVEPFGLAPYILKRRKSLIS-------VFEIIDRVPKIDPDDSSAV 1045
+ +F ++ P + +FEI+D + DD AV
Sbjct: 296 ----IATFIGYSRQFTRPLNELSNQFN---MIQMALASAERIFEILDLEE--EKDDPDAV 346
Query: 1046 KPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERF 1105
+ V G IE KNV F Y + VL + + + GQ VA+VG +GSGK+TI++L+ RF
Sbjct: 347 ELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 1106 YDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEA 1165
YD GQ+L+DG D++ LR+ +G+V Q+ I+FSTT++EN+ Y A++ E+KEA
Sbjct: 405 YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEA 464
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
A++ ++ HFI LP GY+T + G DL+ GQ+Q +AI R L N IL+LDEA+S++++
Sbjct: 465 AKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLY 1285
++ + +Q A+ L M KT+I+IAHR +++ D I+VL G IVE G HD L+ K G Y
Sbjct: 525 KTEKSIQAAMWKL-MEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFY 583
Query: 1286 VRL 1288
L
Sbjct: 584 YEL 586
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = 2e-99
Identities = 160/525 (30%), Positives = 263/525 (50%), Gaps = 34/525 (6%)
Query: 32 LALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIV 91
L L +Y + W++ + + +R + L + FFD +GDI+
Sbjct: 81 LILGTIYALTSLL--FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDII 137
Query: 92 SQVLSDVLLIQSALSEKVGNYIHNMATFFSGLAIAFVNCWQIALITLCTGPF-IVAAGGI 150
S+V++DV I + L + + + T + + F ++L+TL P ++ +
Sbjct: 138 SRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIV 197
Query: 151 SNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFT------------NETLAKYSYAT 198
S+ + Q + I E+ +S + + FT NE+L
Sbjct: 198 SS-QTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESL----RKV 252
Query: 199 SLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVI 258
+A + G+L L+ + + L G +L + G I T +
Sbjct: 253 GTKAQIFSGVLPPLMNMVN-NLGFALIS-------GFGGWLALKDIITVGTIATFIGYSR 304
Query: 259 LSGLGLNQAATNFYSFDQGRIA-AYRLYEMISRSSSTTNYDGNTLPSVHGNIEFRNVYFS 317
LN+ + N ++ Q +A A R++E++ + D L V G IEF+NV+FS
Sbjct: 305 QFTRPLNELS-NQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFS 363
Query: 318 YLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKN 377
Y + P+L + + VALVG GSGK++I+ L+ RFYD G++L+DG +I+
Sbjct: 364 Y--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421
Query: 378 LKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGY 436
+K LRS IG+V Q+ L S ++++N+ YG AT ++I+EAAK+ H+ FI L +GY
Sbjct: 422 IKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGY 481
Query: 437 ETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGR 496
ET + G L++ Q+ L+I RA L NP IL+LDE T +D + E+++Q A+ LM G+
Sbjct: 482 ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGK 541
Query: 497 STIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
++IIIA RL+ I+NAD I V+ +G + EMG HDEL+ Y EL
Sbjct: 542 TSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYEL 586
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 346 bits (889), Expect = e-109
Identities = 107/272 (39%), Positives = 165/272 (60%), Gaps = 9/272 (3%)
Query: 1021 RKSLIS---VFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCY-PSRPEVLVLSNFS 1076
I +F+++ ++ D A G IE +NV F Y R L + S
Sbjct: 19 SHMFIDMENMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDVS 74
Query: 1077 LKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQ 1136
V GQT+A+VG SG+GKSTI+ L+ RFYD +G + +DG+D+ LR+H+G+V
Sbjct: 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVP 134
Query: 1137 QEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196
Q+ ++F+ TI +NI Y R A EV+ AA+ A H I + P GY T VG RG+ L+ G
Sbjct: 135 QDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMR 1256
+KQR+AIAR +LK I+LLDEA+S++++ + R +Q +L + N+TTI++AHR + +
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV-CANRTTIVVAHRLSTVV 253
Query: 1257 HVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288
+ D I+V+ G IVE G H++LL++ G+Y +
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = 7e-98
Identities = 105/280 (37%), Positives = 160/280 (57%), Gaps = 4/280 (1%)
Query: 264 LNQAATNFYSFDQGRIAAYRLYEMISRSSSTTNYDG-NTLPSVHGNIEFRNVYFSYLSRP 322
+ ++ I +++++ + + G L G IEF NV+FSY
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY--AD 65
Query: 323 EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382
L TV + +ALVG +G+GKS+I+ L+ RFYD + G + +DG++I +
Sbjct: 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQAS 125
Query: 383 LRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVG 441
LRS IG+V Q+ L + +I DNI YGR A D++E AA+ A H I + +GY TQVG
Sbjct: 126 LRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185
Query: 442 RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIII 501
GL L+ +K +++IAR +L P I+LLDE T LD ERA+Q +L + R+TI++
Sbjct: 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV 245
Query: 502 ARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAEL 541
A RLS + NAD I V+ +G + E G H+ LL+ G +YA++
Sbjct: 246 AHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 326 bits (837), Expect = 2e-98
Identities = 145/529 (27%), Positives = 253/529 (47%), Gaps = 33/529 (6%)
Query: 771 VNKWCLIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLR---NEVGWFDEEE 827
V K +++ + ++ V + + +RR +F +L + V F
Sbjct: 62 VLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRF---- 117
Query: 828 NSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPIL 887
+L RL ND T ++ L I ++ + +++ + + +L+ V + +P +
Sbjct: 118 -HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPI 176
Query: 888 SLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYR---LQLK 944
L + R IQ+ + + V+ + + + V AF E +R L+
Sbjct: 177 VLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLR 236
Query: 945 KIFTKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDL--PTALKEYM---V 999
+ + I FA F++ +LW+ G VR+ M++ A Y+ +
Sbjct: 237 RSIISA---FSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIM 293
Query: 1000 FSFATFALVEPFGLAPYILKRRKSLIS---VFEIIDRVPKIDPDDSSAVKPPNVYGSIEL 1056
FS + ++ S V E+++ P I+ + +A+ PNV GS+
Sbjct: 294 FSLMMIGNI--LNFIV------RASASAKRVLEVLNEKPAIE-EADNALALPNVEGSVSF 344
Query: 1057 KNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLD 1116
+NV+F Y + VLS + V G VAV+G +GSGKST+++LI R DP G+V +D
Sbjct: 345 ENVEFRYFENTD-PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD 403
Query: 1117 GRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFIS 1176
D++ L+ LR H+ V QE ++FS TI+EN+ + R +A++ E+ EAA+IA H FI
Sbjct: 404 ELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFII 463
Query: 1177 SLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALD 1236
SLP GYD+ V G + + GQKQR++IAR ++K +L+LD+ +SS++ + + + + L
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523
Query: 1237 TLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLY 1285
TT +I + D I+VL+ G++ GTH LL Y
Sbjct: 524 RY-TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPY 571
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 273 bits (700), Expect = 1e-79
Identities = 135/489 (27%), Positives = 230/489 (47%), Gaps = 46/489 (9%)
Query: 76 QDMSF--FDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMA---------TFFSGLA 124
S + + +++++ +DV +Q+ + M F G+
Sbjct: 107 LSFSISNVNRFHT-SSLITRLTNDVTQLQNLV---------MMLLRIVVRAPLLFVGGIV 156
Query: 125 IAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLY 184
+A +++ + + P IV + L IQ++ E + + + +R +
Sbjct: 157 MAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVR 216
Query: 185 AFTNET--LAKYSYATS--LQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLV 240
AF E + A ++ + LI L F + + + A+ LW G LV
Sbjct: 217 AFRREEYENENFRKANESLRRSIISAFSLIVFALPL---FIFIVNMGMIAV-LWFGGVLV 272
Query: 241 THNKAHGGEIV-------TALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSS 293
+N+ G I+ +F++++ + +A R+ E+++ +
Sbjct: 273 RNNQMEIGSIMAYTNYLMQIMFSLMM-------IGNILNFIVRASASAKRVLEVLNEKPA 325
Query: 294 TTN-YDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS 352
+ LP+V G++ F NV F Y P+LSG +V VA++G GSGKS+
Sbjct: 326 IEEADNALALPNVEGSVSFENVEFRY-FENTDPVLSGVNFSVKPGSLVAVLGETGSGKST 384
Query: 353 IIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DA 411
++ L+ R DP G V +D +++ +KL+ LR I V QE L S +I++N+ +GR DA
Sbjct: 385 LMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDA 444
Query: 412 TLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLD 471
T D+I EAAKIA H FI SL +GY+++V R G + QK +LSIARA++ P +L+LD
Sbjct: 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD 504
Query: 472 EVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDEL 531
+ T +D E+ + + L G +T II +++ AD I V+ EG++ GTH EL
Sbjct: 505 DCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
Query: 532 LATGDLYAE 540
L Y E
Sbjct: 565 LEHCKPYRE 573
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-50
Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 12/256 (4%)
Query: 1041 DSSAVKPPN---VYGSIELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKS 1096
++S VK + G + +K++ Y +L N S ++ GQ V ++G +GSGKS
Sbjct: 4 ENSHVKKDDIWPSGGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 1097 TIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENII-YARH 1155
T++S R + G++ +DG L R G++ Q+ IFS T R+N+ A H
Sbjct: 62 TLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 1156 NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILL 1215
S+ E+ + A I P D + G L+ G KQ + +AR VL A ILL
Sbjct: 121 --SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 178
Query: 1216 LDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTH 1275
LDE S+ ++ + ++++ L + T IL R M D +V+ ++ + +
Sbjct: 179 LDEPSAHLDPVTYQIIRRTLKQA-FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSI 237
Query: 1276 DSLLA-KNGLYVRLMQ 1290
L +V
Sbjct: 238 LELYHYPADRFVAGFI 253
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 8e-45
Identities = 60/295 (20%), Positives = 118/295 (40%), Gaps = 9/295 (3%)
Query: 306 HGNIEFRNVYFSYLSRPEIP-ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
G + +++ Y IL ++ + V L+GR GSGKS+++ R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAH 424
GE+ +DG + ++ LE R G++ Q+ + S + R N+ + +I + A
Sbjct: 75 -GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVG 133
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
+ I + + G L+ K + +AR+VL ILLLDE + LD +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 485 VQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLA--TGDLYAELL 542
++ L + I+ R+ + D V++E ++ + + EL A +
Sbjct: 194 IRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFI 253
Query: 543 KCEEAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKSPSLQRVGIY 597
+ LP ++ + Q+E P + ++ + +GI
Sbjct: 254 GSPKMNFLPVKVTATAIDQV---QVELPMPNRQQVWLPVESRDVQVGANMSLGIR 305
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 2e-44
Identities = 56/241 (23%), Positives = 106/241 (43%), Gaps = 21/241 (8%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
+ ++NV + VL + + K+ GQ +AV G +G+GK++++ +I +P G
Sbjct: 5 TEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANA 1171
++ GR + Q I TI+ENII+ + E + +
Sbjct: 64 KIKHSGR-------------ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQL 109
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
IS + +G G+ L+ GQ+ RI++AR V K+A + LLD ++ + + +
Sbjct: 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169
Query: 1232 QEALDTLIMG---NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 1288
++ + NKT IL+ + ++ D I++L+ G GT L +
Sbjct: 170 ---FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226
Query: 1289 M 1289
+
Sbjct: 227 L 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 5e-31
Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 15/238 (6%)
Query: 306 HGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTL 365
+ NV + P+L + + +A+ G G+GK+S++ ++ +
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMI-------M 55
Query: 366 GEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHA 425
GE+ IK +I +Q ++ +I++NI +G + K
Sbjct: 56 GELEPSEGKIK------HSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
IS + +G G+ L+ Q+ ++S+ARAV + + LLD G LD E+ +
Sbjct: 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169
Query: 486 -QEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542
+ + LM ++ I++ ++ ++ AD I ++ EG + GT EL ++ L
Sbjct: 170 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 9e-44
Identities = 72/251 (28%), Positives = 128/251 (50%), Gaps = 17/251 (6%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
SI ++N F + +R + L+ + + G VAVVG G GKS+++S + D V G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANA 1171
V + G + V Q+ I + ++RENI++ E + +
Sbjct: 61 HVAIKGS-------------VAYVPQQAWIQNDSLRENILF-GCQLEEPYYRSVIQACAL 106
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR-V 1230
+ LP G T +G +GV+L+ GQKQR+++AR V NA I L D+ S++++ + +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 1231 VQEALDTL-IMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLM 1289
+ + ++ NKT IL+ H + + VD I+V++GG+I E G++ LLA++G + +
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226
Query: 1290 QPHYGKGLRQH 1300
+ + H
Sbjct: 227 RTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 8e-29
Identities = 63/240 (26%), Positives = 115/240 (47%), Gaps = 17/240 (7%)
Query: 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
+I RN F++ +R + P L+G ++P VA+VG+ G GKSS++ + L
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSAL-------LA 53
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAH 426
E+ ++ ++ + V Q+ + + S+R+NI +G +
Sbjct: 54 EMDKVEGHVA------IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
+ L G T++G G+ L+ QK ++S+ARAV N I L D+ +D + +
Sbjct: 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 487 E---ALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543
E ++ ++ I++ +S + D I VM G++ EMG++ ELLA +AE L+
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-43
Identities = 60/273 (21%), Positives = 114/273 (41%), Gaps = 28/273 (10%)
Query: 1025 ISVF--EIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGG 1082
++ F E + + +++ K N S+ N VL + + K+ G
Sbjct: 10 VTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDINFKIERG 64
Query: 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIF 1142
Q +AV G +G+GK++++ +I +P G++ GR + Q I
Sbjct: 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIM 111
Query: 1143 STTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202
TI+ENII ++ E + + IS + +G G+ L+ GQ+ RI+
Sbjct: 112 PGTIKENIIGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG---NKTTILIAHRAAMMRHVD 1259
+AR V K+A + LLD ++ + + + ++ + NKT IL+ + ++ D
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 1260 NIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPH 1292
I++L+ G GT L + +
Sbjct: 227 KILILHEGSSYFYGTFSELQNLRPDFSSKLMGC 259
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 56/301 (18%), Positives = 117/301 (38%), Gaps = 21/301 (6%)
Query: 278 RIAAYRLYEMISRSSSTTNYDGNTLPSV-HGNIEFRNVYFSYLSRPEIPILSGFYLTVPA 336
+ A+ + N S ++ F N P+L +
Sbjct: 9 NVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIER 63
Query: 337 KKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPAL 396
+ +A+ G G+GK+S++ ++ +P+ G++ G +I +Q +
Sbjct: 64 GQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWI 110
Query: 397 LSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456
+ +I++NI G + K IS + +G G+ L+ Q+ ++S
Sbjct: 111 MPGTIKENI-IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 457 IARAVLLNPSILLLDEVTGGLDFEAERAV-QEALDLLMLGRSTIIIARRLSLIRNADYIA 515
+ARAV + + LLD G LD E+ + + + LM ++ I++ ++ ++ AD I
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229
Query: 516 VMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQIEKDSSASH 575
++ EG + GT EL ++ L ++ + + + + A
Sbjct: 230 ILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGDAPV 289
Query: 576 S 576
S
Sbjct: 290 S 290
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 1e-36
Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 35/251 (13%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++++ +++ Y L ++ + G+ A++G +G GKST+ P +G++
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1114 LLDGRDLKL--YNLRWLRNHLGLVQQEPI--IFSTTIRENIIYARHNA--SEAE----VK 1163
L D + + + LR +G+V Q+P +FS ++ +++ + N E E V
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
A + H H L+ GQK+R+AIA V++ +L+LDE ++ +
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 1224 ESESSRVVQEALDTLIM-GNKTTILIAHR---AAMMRHVDNIVVLNGGRIVEEGT----- 1274
+ + + L + T I+ H + DN+ V+ GR++ +G
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVP--LYCDNVFVMKEGRVILQGNPKEVF 232
Query: 1275 -HDSLLAKNGL 1284
++ K L
Sbjct: 233 AEKEVIRKVNL 243
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 5e-28
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 19/243 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
++ + ++Y L G + + + A++G NG GKS++ P+ G +
Sbjct: 8 LKVEELNYNY--SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 369 LLDGENIKNLK--LEWLRSQIGLVTQEPA--LLSLSIRDNIAYG---RDATLDQIEEAAK 421
L D + I + + LR IG+V Q+P L S S+ ++++G D+I +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
A T I L+ + L+ QK +++IA +++ P +L+LDE T GLD
Sbjct: 126 NALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 482 ERAVQEALDLLM--LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATGDLY 538
+ + L + LG + II + ++ D + VM EGR+ G E+ A ++
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI 238
Query: 539 AEL 541
++
Sbjct: 239 RKV 241
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-35
Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 1053 SIELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVA 1110
IE+ NV + E L N SL +N G+ + V G +GSGKST++ ++ +P +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1111 GQVLLDGRDLKLYNLRWLRNHLGLVQQEPI--IFSTTIRENIIYARHN----ASEAE-VK 1163
G VL DG +R ++G+ Q P F+ + + + +A N VK
Sbjct: 62 GDVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 1164 EAARIAN--AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
+A F +P L+ G+K+R+AIA V++ IL+LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 1222 SIESESSRVVQEALDTLIMGNKTTILIAHRAAM---MRHVDNIVVLNGGRIVEEGT 1274
++ E + ++ KT ILI+H + + HVD +VVL G+ V +GT
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHD--IETVINHVDRVVVLEKGKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 30/244 (12%)
Query: 309 IEFRNVYFSYLSRP--EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
IE NV + E L L + + + + G GSGKS+++ ++ +PT G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPA--LLSLSIRDNIAYG-RDATLDQIEEAAKIA 423
+VL DGE K +R IG+ Q P + + D +A+ ++ D + +
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD--RDPVPLV 117
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEE--------QKIKLSIARAVLLNPSILLLDEVTG 475
++E VG + + +K +++IA ++ P IL+LDE
Sbjct: 118 KK-----AME-----FVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 476 GLDFEAERAVQEALDLL-MLGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLA 533
GLD E + + ++ LG++ I+I+ + + + D + V+++G+ GT E L
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
Query: 534 TGDL 537
D
Sbjct: 228 KYDP 231
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 44/239 (18%), Positives = 89/239 (37%), Gaps = 33/239 (13%)
Query: 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
I+LKNV + E L N +L+VNG + V ++G +GSGK+T++ I P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNG-EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS--TTIRENIIYARHN--ASEAEVKEAARI 1168
+ ++G +++ +RN++ P + T+ + + E +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 1169 AN-AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESES 1227
+ + L+ GQ + + + I+ LDE ++++
Sbjct: 115 LKLGEEILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 1228 SRVVQEALDTLIMGNKTTILIAH---RAAMMRHVDNIVVLN-GGRIVEEGTHDSLLAKN 1282
V+ + K IL+ H + + G R+ + LL +
Sbjct: 164 RHVISRYIKEY---GKEGILVTHELDMLNLY--KEYKAYFLVGNRLQGPISVSELLESS 217
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 46/242 (19%), Positives = 85/242 (35%), Gaps = 47/242 (19%)
Query: 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I+ +NV + + E L L V +K V ++G NGSGK++++ + P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPAL--LSLSIRDNIAYG---RDATLDQIEEAAKI 422
+ ++G ++ + R+ I T P + +++ D + + D E K
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 423 AH-----AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
+ L G Q + + + A+ P I+ LDE +
Sbjct: 115 LKLGEEILRRKLYKLSAG---------------QSVLVRTSLALASQPEIVGLDEPFENV 159
Query: 478 DFEAERAVQEALDLLMLGRSTIII------ARRLSLIRNADYIAVMDEG-RLFEMGTHDE 530
D + + G+ I++ +Y A G RL + E
Sbjct: 160 DAARRHVISRYIK--EYGKEGILVTHELDMLNLY-----KEYKAYFLVGNRLQGPISVSE 212
Query: 531 LL 532
LL
Sbjct: 213 LL 214
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 49/251 (19%), Positives = 107/251 (42%), Gaps = 16/251 (6%)
Query: 1041 DSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIIS 1100
SS + P + I+L + + +L S ++ G + G++G+GK+T+++
Sbjct: 9 HSSGLVPRGSHMLIQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLN 65
Query: 1101 LIERFYDPVAGQVLLDGRDL--KLYNLRWLRNHLGLVQQE---PIIFSTTIRENIIYARH 1155
++ + +G V L G+ Y+ +R H+G V + + +I
Sbjct: 66 ILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAF 125
Query: 1156 NASE--AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213
+ ++ + R AH + + G L+ G+KQR+ IAR ++ +
Sbjct: 126 KSIGVYQDIDDEIR-NEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQV 182
Query: 1214 LLLDEASSSIESESSRVVQEALDTLIMGNK--TTILIAHRAA-MMRHVDNIVVLNGGRIV 1270
L+LDE ++ ++ + + LD+L I + H + + I++L G+ +
Sbjct: 183 LILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI 242
Query: 1271 EEGTHDSLLAK 1281
++G + +L
Sbjct: 243 QQGAVEDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 50/240 (20%), Positives = 99/240 (41%), Gaps = 16/240 (6%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I+ + + IL + L G NG+GK++++ ++ + T G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 369 LLDGENIKNLK--LEWLRSQIGLVTQEPAL---LSLSIRDNIAYGRDATLD--QIEEAAK 421
L G+ + E +R IG V+ + D + G ++ Q +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
AH + + G + + L+ +K ++ IARA++ P +L+LDE GLDF A
Sbjct: 139 RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIA 196
Query: 482 ERAVQEALDLLM---LGRSTIIIARRLSLIRNA-DYIAVMDEGRLFEMGTHDELLATGDL 537
++ LD L + I + + I I ++ +G+ + G +++L + ++
Sbjct: 197 RESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENM 256
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 6e-27
Identities = 42/249 (16%), Positives = 81/249 (32%), Gaps = 29/249 (11%)
Query: 1031 IDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGV 1090
+ N S VL+ + + + + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGE 386
Query: 1091 SGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPI--IFSTTIRE 1148
+G+GK+T+I L+ P GQ + N+ + + +F IR
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQKIAPKFPGTVRQLFFKKIRG 440
Query: 1149 NIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208
+ + + + I L+ G+ QR+AI +
Sbjct: 441 QFL------NPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAIVLALG 483
Query: 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTIL-IAHRAAMMRHV-DNIVVLNG 1266
A I L+DE S+ ++SE + + + I+ NK T + H M ++ D ++V G
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543
Query: 1267 GRIVEEGTH 1275
Sbjct: 544 IPSKNAHAR 552
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 7e-24
Identities = 48/269 (17%), Positives = 99/269 (36%), Gaps = 34/269 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLI--------ERF 1105
+V Y + L + GQ + +VG +G GKST + ++ RF
Sbjct: 78 NLEAHVTHRYSANSFKL---HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 1106 YDPVAGQVLL---DGRDLKLYNLRWLRNHLGLVQQEPII--FSTTIRENIIYARHN---- 1156
DP Q ++ G +L+ Y + L + + + + + I+ +
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 1157 --ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPIL 1214
S +VK +I + + L+ G+ QR AI ++ A +
Sbjct: 195 MEKSPEDVKRYIKILQLENVLKRDIE-----------KLSGGELQRFAIGMSCVQEADVY 243
Query: 1215 LLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEG 1273
+ DE SS ++ + + + +L+ K I + H +++ ++ D + ++ G V
Sbjct: 244 MFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGV 303
Query: 1274 THDSLLAKNGLYVRLMQPHYGKGLRQHRL 1302
+ G+ + L + LR
Sbjct: 304 VTLPASVREGINIFLDGHIPAENLRFRTE 332
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-15
Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 29/213 (13%)
Query: 315 YFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN 374
Y S +L+ + + ++G NG+GK+++I L+ P G+
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------ 409
Query: 375 IKNLKLEWLRSQIGLVTQEP--ALLSLSIRDNIAYGRDATLDQIEEAAKIAH-AHTFISS 431
I L + +I L IR + T + + +I +
Sbjct: 410 IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQT--DVVKPLRIDDIIDQEVQH 467
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDL 491
L G + +++I A+ + I L+DE + LD E + +
Sbjct: 468 LSGG---------------ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 492 LM--LGRSTIIIARRLSLIRN-ADYIAVMDEGR 521
+ ++ I+ + AD + V +
Sbjct: 513 FILHNKKTAFIVEHDFIMATYLADKVIVFEGIP 545
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-10
Identities = 51/313 (16%), Positives = 105/313 (33%), Gaps = 42/313 (13%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS--------IIPLMERF 360
+V Y T + + LVG NG GKS+ P + RF
Sbjct: 78 NLEAHVTHRY---SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 361 YDPTLGEVLL---DGENIKNLKLEWLRSQIGLVTQEP-------ALLS--LSIRDNIAYG 408
DP + ++ G ++N + L I + + A+ + + +
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 409 RDATLDQIEEAAKIAHAHTFISSLEKGYETQV--GRAGLALTEEQKIKLSIARAVLLNPS 466
+ + + ++ KI + ++ K ++ G E Q+ +I + +
Sbjct: 195 MEKSPEDVKRYIKILQ----LENVLKRDIEKLSGG-------ELQRF--AIGMSCVQEAD 241
Query: 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIAR-RLSLIRN-ADYIAVMDEGRLFE 524
+ + DE + LD + + + L+ +I LS++ +D++ ++ G
Sbjct: 242 VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII-YGVPSV 300
Query: 525 MGTHDELLATGDLYAELLKCE-EAAKLPRRMPVRNYKETSTFQIEKDSSASHSFQEPSSP 583
G + + L A L R ++ + ++ SAS +F PS
Sbjct: 301 YGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLK 360
Query: 584 KMLKSPSLQRVGI 596
K L
Sbjct: 361 KTQGDFVLNVEEG 373
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 4e-26
Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 31/233 (13%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKST---IISLIERFYDPVA 1110
+ +N+ +L SL V G+ V+++G SGSGKST I+ L++ P
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 1111 GQVLLDGRDLKLYN---LRWLRN-HLGLV-QQEPIIFSTTIRENI----IYARHNASEAE 1161
G+V L+G+++ N L LRN LG V Q +I T EN+ + EA+
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK 118
Query: 1162 --VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
+ +S P+ +L+ G++QR+AIAR + +L DE
Sbjct: 119 ERGEYLLSELGLGDKLSRKPY-----------ELSGGEQQRVAIARALANEPILLFADEP 167
Query: 1220 SSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE 1272
+ +++S +++ V + + G + +++ H + + + G++V E
Sbjct: 168 TGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 54/246 (21%), Positives = 96/246 (39%), Gaps = 68/246 (27%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS---IIPLMERFYDPTL 365
+ N+ IL G L+V + V+++G +GSGKS+ I+ L++ PT
Sbjct: 5 LRAENIKKVI---RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 366 GEVLLDGENIKNL---KLEWLRSQ-IGLVTQEPALLS-LSIRDNIA----YGRDATLDQI 416
G+V L+G+ + +L LR++ +G V Q L+ L+ +N+ +
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK 118
Query: 417 EEAAKIAHAHTFISSLEKGYETQVGRAGLA---------LTEEQKIKLSIARAVLLNPSI 467
E + L GL L+ ++ +++IARA+ P +
Sbjct: 119 ERGEYL---------LS--------ELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161
Query: 468 LLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527
L DE TG LD + +D+ +++ + G M T
Sbjct: 162 LFADEPTGNLD---SANTKRVMDIF----------LKIN-----------EGGTSIVMVT 197
Query: 528 HDELLA 533
H+ LA
Sbjct: 198 HERELA 203
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-26
Identities = 66/238 (27%), Positives = 117/238 (49%), Gaps = 32/238 (13%)
Query: 1054 IELKNVDFCYPSR-PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
I+L N+ + + L+N SL V GQ V+G SG+GKST+I + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1113 VLLDGRDLKLYN---LRWLRNHLGLV-QQEPIIFSTTIRENIIYARHNASEAEVKEAARI 1168
VL+DG++L + L R +G++ Q ++ S T+ N+ + + + R+
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 1169 ANAHHFISSLPHGYDTHVGMRG------VDLTPGQKQRIAIARVVLKNAP-ILLLDEASS 1221
VG+ +L+ GQKQR+AIAR L + P +LL D+A+S
Sbjct: 145 TELLSL-----------VGLGDKHDSYPSNLSGGQKQRVAIAR-ALASNPKVLLCDQATS 192
Query: 1222 SIESESSRVVQEALDTLIMGNK----TTILIAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
+++ ++R + L+ L N+ T +LI H +++ + D + V++ G ++E+ T
Sbjct: 193 ALDPATTRSI---LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 1e-21
Identities = 68/284 (23%), Positives = 118/284 (41%), Gaps = 46/284 (16%)
Query: 309 IEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I+ N+ + I L+ L VPA + ++G +G+GKS++I + PT G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 368 VLLDGENIKNLK---LEWLRSQIGLVTQEPALL-SLSIRDNIAYG-RDATLDQIEEAAKI 422
VL+DG+ + L L R QIG++ Q LL S ++ N+A + E ++
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 423 A----------HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472
++ S+L G QK +++IARA+ NP +LL D+
Sbjct: 145 TELLSLVGLGDKHDSYPSNLSGG---------------QKQRVAIARALASNPKVLLCDQ 189
Query: 473 VTGGLDFEAERAVQEALDLLM-----LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMG 526
T LD R++ L+LL LG + ++I + +++ D +AV+ G L E
Sbjct: 190 ATSALDPATTRSI---LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246
Query: 527 THDELLA------TGDLYAELLKCEEAAKLPRRMPVRNYKETST 564
T E+ + L + R+ + +
Sbjct: 247 TVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVP 290
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 6e-26
Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 36/240 (15%)
Query: 1054 IELKNVDFCYPS-RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKST---IISLIERFYDPV 1109
++LKNV Y + L N +L + G+ V+++G SGSGKST II +++ P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1110 AGQVLLDGRDLKLYN---LRWLRN-HLGLV-QQEPIIFSTTIRENI----IYARHNASEA 1160
G+V +D + L +R +G V QQ +I T EN+ I+
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKY----RG 114
Query: 1161 EVKEAARIANAHHFISSLPHGYDTHVGM--RGVDLTP-----GQKQRIAIARVVLKNAPI 1213
+ R A + + R + P GQ+QR+AIAR + N PI
Sbjct: 115 AMSGEERRKRALECLKM--------AELEERFANHKPNQLSGGQQQRVAIARALANNPPI 166
Query: 1214 LLLDEASSSIESESSRVVQEALDTL-IMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEE 1272
+L D+ + +++S++ + + L L KT +++ H + R + I+ L G + E
Sbjct: 167 ILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 37/215 (17%)
Query: 309 IEFRNVYFSY-LSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSS---IIPLMERFYDPT 364
++ +NV +Y + I L L + + V+++G +GSGKS+ II +++ PT
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 365 LGEVLLDGENIKNL---KLEWLRSQ-IGLVTQEPALLS-LSIRDNIA----YGRDATLDQ 415
GEV +D +L +L +R IG V Q+ L+ L+ +N+ + +
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 416 IEEAAKIAHAHTFISSLEKGYETQVG---RAGLALTEE----QKIKLSIARAVLLNPSIL 468
EE K A L+ R + Q+ +++IARA+ NP I+
Sbjct: 119 -EERRKRALE-----CLKM-----AELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 469 LLDEVTGGLDFEAERAVQEALDLL--MLGRSTIII 501
L D+ T LD + + + L L G+ T+++
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGK-TVVV 201
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-25
Identities = 56/260 (21%), Positives = 102/260 (39%), Gaps = 32/260 (12%)
Query: 1018 LKRRKSLISVFEIIDRVPKI-DPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFS 1076
L I EI + ++ D D S +K + I K DF L +
Sbjct: 238 LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---------QLVVDN 288
Query: 1077 LKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQ 1136
+ G+ + ++G +G GK+T ++ G V + + L R N+ G VQ
Sbjct: 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQ 348
Query: 1137 QEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG 1196
Q ++ + + S +E + N H + S + DL+ G
Sbjct: 349 Q---YLENASKDAL-----STSSWFFEEVTKRLNLHRLLESNVN-----------DLSGG 389
Query: 1197 QKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTIL-IAHRAAMM 1255
+ Q++ IA + K A + +LD+ SS ++ E +V +A+ + K I H ++
Sbjct: 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH 449
Query: 1256 RHV-DNIVVLNGGRIVEEGT 1274
++ D I+V G + G
Sbjct: 450 DYIADRIIVFK-GEPEKAGL 468
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-18
Identities = 43/255 (16%), Positives = 92/255 (36%), Gaps = 42/255 (16%)
Query: 1072 LSNFSLKV-NGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR- 1129
F L + V+G +G GK+T++ ++ P G + + K L+ R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRG 71
Query: 1130 NHLGLVQQEP-------------------IIFSTTIRENIIYARHNASEAEVKEAARIAN 1170
+ +E + T N I + + E + N
Sbjct: 72 KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGT---VNEILTKIDERGK-KDEVKELLN 127
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
+ + + L+ G QR+ +A +L+ A + + D+ SS ++
Sbjct: 128 MTNLWNKDAN-----------ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 1231 VQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAKNGL--YVR 1287
+ +A+ L+ K I++ H ++ ++ D I ++ G V S A+ G+ +++
Sbjct: 177 MAKAIRELLKN-KYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLK 235
Query: 1288 LMQPHYGKGLRQHRL 1302
P +R +
Sbjct: 236 GYLPAENMKIRPDEI 250
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-14
Identities = 37/228 (16%), Positives = 81/228 (35%), Gaps = 24/228 (10%)
Query: 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP 363
+ +++ + + + + L + + ++G NG GK++ ++
Sbjct: 261 DLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA 320
Query: 364 TLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIA 423
G V + + + + G V Q L + +D ++ +++ + +
Sbjct: 321 DEGSVTPEKQILSYKPQRIFPNYDGTVQQ---YLENASKDALS-TSSWFFEEVTKRLNLH 376
Query: 424 H-AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
+ ++ L G + KL IA + + +LD+ + LD E
Sbjct: 377 RLLESNVNDLSGG---------------ELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 483 RAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527
V +A+ + T II LS+ AD I V +G + G
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGL 468
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-13
Identities = 42/257 (16%), Positives = 93/257 (36%), Gaps = 25/257 (9%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR-SQIGLVTQEPALLS 398
+ ++G+NG GK++++ ++ P G+ + + K+ L+ R +I +E
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYFKELYSNE 85
Query: 399 LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRA-GLALTEEQKI-KLS 456
L I I Y ++ + K E+G + +V + + LS
Sbjct: 86 LKIVHKIQY-----VEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILS 140
Query: 457 --------IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508
+A ++L + + D+ + LD + +A+ L+ + I++ L ++
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVL 200
Query: 509 RN-ADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRMPVRNYKETSTFQI 567
D I ++ G G + A LK ++ + F +
Sbjct: 201 DYLTDLIHII-YGESSVYGRVSKSYAARVGINNFLK-----GYLPAENMKIRPDEIKFML 254
Query: 568 EKDSSASHSFQEPSSPK 584
++ S S + K
Sbjct: 255 KEVSDLDLSKDLKTKMK 271
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-24
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 26/216 (12%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130
L S +V G+ + +VG +G+GKST+++ + G + G+ L+ ++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 1131 HLGLVQQEPII-FSTTIRENIIYARH-NASEAEVKEAARIANAHHFISSLPHGYDTHVGM 1188
H + Q+ F+T + + +H + + A L +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK---LGRSTNQ---- 126
Query: 1189 RGVDLTPGQKQRIAIARVVLKNAP-------ILLLDEASSSIESESSRVVQEALDTLIMG 1241
L+ G+ QR+ +A VVL+ P +LLLDE +S++ + + L L
Sbjct: 127 ----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182
Query: 1242 NKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGT 1274
++ +H RH +L GG+++ G
Sbjct: 183 GLAIVMSSHDLNHTL--RHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 1e-19
Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 18/217 (8%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384
L V A + + LVG NG+GKS+++ M G + G+ ++ L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 72
Query: 385 SQIGLVTQEPAL-LSLSIRDNIAYGR-----DATLDQIEEAAKIAH-AHTFISSLEKGYE 437
++Q+ + + + + L+ + A + + L G E
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGG-E 131
Query: 438 TQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLLMLGR 496
Q R LA Q I +LLLDE LD + A+ + L L G
Sbjct: 132 WQ--RVRLAAVVLQ-----ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL 184
Query: 497 STIIIARRLSL-IRNADYIAVMDEGRLFEMGTHDELL 532
+ ++ + L+ +R+A ++ G++ G +E+L
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 68/259 (26%), Positives = 115/259 (44%), Gaps = 47/259 (18%)
Query: 1039 PDDSSAVKPPNVYGS--IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKS 1096
SS + P + I++ + + + VL ++ + G+ V V+G SGSGKS
Sbjct: 8 HHHSSGLVPRGSHMLQMIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKS 64
Query: 1097 TIISLIERFYDPVAGQVLLDGRDL--KLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYA 1153
T + + D G++++DG +L K NL +R +G+V Q +F T+ NI A
Sbjct: 65 TFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA 124
Query: 1154 ---RHNASEAEVKEAAR-------IAN-AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202
+ + A + + AH + S L+ GQ QR+A
Sbjct: 125 PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDS---------------LSGGQAQRVA 169
Query: 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLI------MGNKTTILIAHRAAMMR 1256
IAR + I+L DE +S+++ E +V E L + M T +++ H R
Sbjct: 170 IARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGM---TMVVVTHEMGFAR 223
Query: 1257 HV-DNIVVLNGGRIVEEGT 1274
V D ++ ++GG I+EEG
Sbjct: 224 EVGDRVLFMDGGYIIEEGK 242
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 65/251 (25%), Positives = 112/251 (44%), Gaps = 53/251 (21%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I+ + S+ + +L G + + + V ++G +GSGKS+ + + D GE+
Sbjct: 25 IDVHQLKKSF---GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 369 LLDGENI--KNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQI-------EE 418
++DG N+ K+ L +R ++G+V Q L +++ +NI TL + E+
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI------TLAPMKVRKWPREK 135
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLA------LTEEQKIKLSIARAVLLNPSILLLDE 472
A A L+K VG A L+ Q +++IARA+ + P I+L DE
Sbjct: 136 AEAKAMEL-----LDK-----VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDE 185
Query: 473 VTGGLDFEAERAVQEALDLLM-LGRS--TIII-------ARRLSLIRNADYIAVMDEGRL 522
T LD E V E L ++ L T+++ AR + D + MD G +
Sbjct: 186 PTSALDPE---MVGEVLSVMKQLANEGMTMVVVTHEMGFAREV-----GDRVLFMDGGYI 237
Query: 523 FEMGTHDELLA 533
E G ++L
Sbjct: 238 IEEGKPEDLFD 248
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 5e-23
Identities = 60/270 (22%), Positives = 110/270 (40%), Gaps = 30/270 (11%)
Query: 1008 VEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRP 1067
+P G I + + + + R +I S +E + Y S
Sbjct: 312 SKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF- 370
Query: 1068 EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW 1127
L ++ G+ + +VG +G GK+T + ++ +P G+V D Y ++
Sbjct: 371 ---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQY 425
Query: 1128 LR-NHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHV 1186
++ + G V + + S + N + E+ + + YD +V
Sbjct: 426 IKAEYEGTVYE---LLSKIDSSKL---NSNFYKTELLKPL----------GIIDLYDRNV 469
Query: 1187 GMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTI 1246
DL+ G+ QR+AIA +L++A I LLDE S+ ++ E V A+ L+ N+ T
Sbjct: 470 E----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 1247 L-IAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
L + H M+ +V D ++V G G
Sbjct: 526 LVVEHDVLMIDYVSDRLIVFE-GEPGRHGR 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 5e-19
Identities = 44/232 (18%), Positives = 86/232 (37%), Gaps = 33/232 (14%)
Query: 1057 KNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIIS-----LIERFYD-PVA 1110
++ Y VL V G V +VG +G+GK+T + LI + +
Sbjct: 95 EDCVHRY--GVNAFVL-YRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 1111 GQVLL---DGRDLKLYNLRWLRNHLGLVQQEPIIFSTTI------RENIIYARHNASEAE 1161
++ G +L+ Y R + V + + + + + + + +
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ--YVDLLPKAVKGKVRELLKKVDE-VGK 208
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
+E + + + H L+ G+ QR+AIA +L+ A DE SS
Sbjct: 209 FEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 1222 SIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEE 1272
++ V + L K +++ H A++ ++ D I V+ G V
Sbjct: 258 YLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYG 309
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 9e-13
Identities = 46/243 (18%), Positives = 87/243 (35%), Gaps = 30/243 (12%)
Query: 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
+E+ + Y S L + + + +VG NG GK++ + ++ +PT
Sbjct: 354 RETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 409
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAH 424
G+V D + + G V + LLS + ++ + I
Sbjct: 410 EGKVEWDLTVAYKPQYIKAEYE-GTVYE---LLSKIDSS--KLNSNFYKTELLKPLGIID 463
Query: 425 -AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
+ L G + +++IA +L + I LLDE + LD E
Sbjct: 464 LYDRNVEDLSGG---------------ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508
Query: 484 AVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLYAE 540
AV A+ LM ++ +++ + +I +D + V EG G + +
Sbjct: 509 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNR 567
Query: 541 LLK 543
L
Sbjct: 568 FLA 570
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 3e-11
Identities = 33/202 (16%), Positives = 76/202 (37%), Gaps = 30/202 (14%)
Query: 333 TVPAKKAVALVGRNGSGKSSIIPLM-----ERFYDPTL-GEVLLDGENIKNLKLEWLRSQ 386
V V +VG NG+GK++ + ++ + + ++ L+ + R +
Sbjct: 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172
Query: 387 IGLVTQEP-----ALLSLSIRDNIAYG--RDATLDQIEEAAKIAHAHTFISSLEKGYETQ 439
G + LL +++ + + + + EE K + ++ Q
Sbjct: 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELE----LENVLDRELHQ 228
Query: 440 V--GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLLMLGR 496
+ G + +++IA A+L DE + LD V + L G+
Sbjct: 229 LSGG---------ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGK 279
Query: 497 STIIIARRLSLIRN-ADYIAVM 517
+ +++ L+++ +D I V+
Sbjct: 280 AVLVVEHDLAVLDYLSDVIHVV 301
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 6e-22
Identities = 48/246 (19%), Positives = 92/246 (37%), Gaps = 32/246 (13%)
Query: 1033 RVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSG 1092
R +I + + + Y S L ++ G+ + +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 1093 SGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPI--IFSTTIRENI 1150
GK+T + ++ +P G++ D Y ++ + + + S +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLT--VAYK----PQYIKADYEGTVYELLSKIDASKL 376
Query: 1151 IYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210
S E + + +L+ G+ QR+AIA +L++
Sbjct: 377 ------NSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRD 419
Query: 1211 APILLLDEASSSIESESSRVVQEALDTLIMGNKTTIL-IAHRAAMMRHV-DNIVVLNGGR 1268
A I LLDE S+ ++ E V A+ L+ N+ T L + H M+ +V D ++V G
Sbjct: 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-GE 478
Query: 1269 IVEEGT 1274
+ G
Sbjct: 479 PGKYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-19
Identities = 47/244 (19%), Positives = 91/244 (37%), Gaps = 33/244 (13%)
Query: 1057 KNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIIS-----LIERFYD-PVA 1110
++ Y VL V G V +VG +G+GKST + LI +
Sbjct: 25 EDCVHRYGVNAFVL---YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 1111 GQVLL---DGRDLKLYNLRWLRNHLGLVQQEPIIFSTTI------RENIIYARHNASEAE 1161
++ G +L+ Y + + V + + I + + + + +
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLIPKAVKGKVIELLKKADE-TGK 138
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
++E + + + L+ G+ QR+AIA +L+NA DE SS
Sbjct: 139 LEEVVKALELENVLEREIQ-----------HLSGGELQRVAIAAALLRNATFYFFDEPSS 187
Query: 1222 SIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLA 1280
++ A+ L K+ +++ H A++ ++ D I V+ G V
Sbjct: 188 YLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGT 247
Query: 1281 KNGL 1284
+NG+
Sbjct: 248 RNGI 251
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-13
Identities = 47/274 (17%), Positives = 98/274 (35%), Gaps = 36/274 (13%)
Query: 332 LTVPAKKAVALVGRNGSGKSSII-----PLMERFYD-PTLGEVLLDGENIKNLKLEWLR- 384
V V +VG NG+GKS+ + L+ + ++ L+ + +
Sbjct: 42 PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101
Query: 385 --SQIGLVTQEP--ALLSLSIRDNIAYG--RDATLDQIEEAAKIAHAHTFISSLEKGYET 438
+I V + L+ +++ + + ++EE K + ++ +
Sbjct: 102 KNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALE----LENVLEREIQ 157
Query: 439 QV--GRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLLMLG 495
+ G E Q++ +IA A+L N + DE + LD A+ L G
Sbjct: 158 HLSGG-------ELQRV--AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG 208
Query: 496 RSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCEEAAKLPRRM 554
+S +++ L+++ +D I V+ G G + T + E L+ +
Sbjct: 209 KSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYGIFSQPKGTRNGINEFLR-----GYLKDE 262
Query: 555 PVRNYKETSTFQIEKDSSASHSFQEPSSPKMLKS 588
VR F + + P+++K
Sbjct: 263 NVRFRPYEIKFTKTGERVEIERETLVTYPRLVKD 296
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 3e-12
Identities = 50/280 (17%), Positives = 98/280 (35%), Gaps = 49/280 (17%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ + + Y S L + + + +VG NG GK++ + ++ +PT G++
Sbjct: 288 VTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIA----- 423
D + + G V + LLS + ++ + I
Sbjct: 344 EWDLTVAYKPQYIKADYE-GTVYE---LLSKIDAS--KLNSNFYKTELLKPLGIIDLYDR 397
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAER 483
+ S G E Q +++IA +L + I LLDE + LD E
Sbjct: 398 EVNEL--S---GGELQ--------------RVAIAATLLRDADIYLLDEPSAYLDVEQRL 438
Query: 484 AVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATGDLYAE 540
AV A+ LM ++ +++ + +I +D + V EG + G + +
Sbjct: 439 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGEPGKYGRALPPMGMREGMNR 497
Query: 541 LLKCEEAAKLPRRMPVRNYKETSTFQ--IEKDSSASHSFQ 578
L + + ++ T + K+ S Q
Sbjct: 498 FLA---------SIGITFRRDPDTGRPRANKEGSVKDREQ 528
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 7e-22
Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 44/232 (18%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLY------- 1123
VL SL+ G ++++G SGSGKST + I P G ++++G+++ L
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1124 ------NLRWLRNHLGLVQQEPIIFS-TTIRENIIYA---RHNASEAEVKEAARIANAHH 1173
LR LR L +V Q ++S T+ EN++ A S+ + +E A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL------ 134
Query: 1174 FISSLPHGYDTHVGM--RGVDLTP-----GQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
Y VG+ R P GQ+QR++IAR + +LL DE +S+++ E
Sbjct: 135 -------KYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 1227 SSRVVQEALDT---LIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGT 1274
+V E L L KT +++ H RHV +++ L+ G+I EEG
Sbjct: 188 ---LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 58/263 (22%), Positives = 114/263 (43%), Gaps = 65/263 (24%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ +++ Y +L G L A ++++G +GSGKS+ + + P+ G +
Sbjct: 7 LHVIDLHKRY---GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 369 LLDGENIKNLK-------------LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLD 414
+++G+NI ++ L LR+++ +V Q L S +++ +N+
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENV------MEA 117
Query: 415 QI-------EEAAKIAHAHTFISSLEKGYETQVGRAGLA-------LTEEQKIKLSIARA 460
I +A + A + L K VG A L+ Q+ ++SIARA
Sbjct: 118 PIQVLGLSKHDARERALKY-----LAK-----VGIDERAQGKYPVHLSGGQQQRVSIARA 167
Query: 461 VLLNPSILLLDEVTGGLDFEAERAVQEAL----DLLMLGRSTIII------ARRLSLIRN 510
+ + P +LL DE T LD E V E L L G++ +++ AR +
Sbjct: 168 LAMEPDVLLFDEPTSALDPE---LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV----- 219
Query: 511 ADYIAVMDEGRLFEMGTHDELLA 533
+ ++ + +G++ E G +++
Sbjct: 220 SSHVIFLHQGKIEEEGDPEQVFG 242
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 8e-22
Identities = 59/263 (22%), Positives = 108/263 (41%), Gaps = 49/263 (18%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ +++ + IL G + + L+G NG+GK++ + ++ P+ G V
Sbjct: 16 VVVKDLRKRI---GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNIAY-------GRDATLDQIEEAA 420
+ G+N+ E +R I + +E ++ + + + + +E A
Sbjct: 73 TVFGKNVVEEPHE-VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 421 KIA----HAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
+IA +S+ KG KL IARA+++NP + +LDE T G
Sbjct: 132 EIAGLGEKIKDRVSTYSKGM---------------VRKLLIARALMVNPRLAILDEPTSG 176
Query: 477 LDFEAERAVQEALDLLMLGRSTIII-------ARRLSLIRNADYIAVMDEGRLFEMGTHD 529
LD R V++ L TI++ L D IA++ G + E GT +
Sbjct: 177 LDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL-----CDRIALIHNGTIVETGTVE 231
Query: 530 ELLATG------DLYAELLKCEE 546
EL +++ E++KC E
Sbjct: 232 ELKERYKAQNIEEVFEEVVKCSE 254
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 7e-20
Identities = 49/237 (20%), Positives = 106/237 (44%), Gaps = 21/237 (8%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ +K++ + +L S ++ G+ ++G +G+GK+T + +I P +G V
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENI-IYAR-HNASEAEVKEAARIAN 1170
+ G+++ + +R + + +E + E + A + +S +E++E +
Sbjct: 73 TVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE--MVER 129
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
A L V + G +++ IAR ++ N + +LDE +S ++ ++R
Sbjct: 130 ATEIAG-LGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 184
Query: 1231 VQEALDTLIMGNKTTILIAHRAAMMRHV----DNIVVLNGGRIVEEGTHDSLLAKNG 1283
V++ L T ++ +H M V D I +++ G IVE GT + L +
Sbjct: 185 VRKILKQASQEGLTILVSSH---NMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 238
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 1e-21
Identities = 35/228 (15%), Positives = 92/228 (40%), Gaps = 34/228 (14%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++++ Y + VL ++ + G V G +G GK+T++ I + P+ G++
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARH----NASEAEVKEA--- 1165
+ +G + ++ + + +E I+ ++ + + ++ E+ +A
Sbjct: 67 IYNG-----VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
+ + + L G +R+ +A +L NA I +LD+ +I+
Sbjct: 122 VEVLDLKKKLGELSQGT---------------IRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEG 1273
+S V +++ ++ I+ + + + D L+ +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSRE--ELSYCDVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 1e-21
Identities = 41/224 (18%), Positives = 91/224 (40%), Gaps = 36/224 (16%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E R++ Y + P+L +T+ V G NG GK++++ + + P GE+
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNIA-----YGRDATLDQIEEAAK- 421
+ +G I +K +I + +E + +S+ D + YG ++I +A +
Sbjct: 67 IYNGVPITKVK-----GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 422 --IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
+ + L +G ++ +A +L+N I +LD+ +D
Sbjct: 122 VEVLDLKKKLGELSQGT---------------IRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 480 EAERAVQEAL-DLLMLGRSTIIIARRLSLIRNADYIAVMDEGRL 522
+++ V +++ ++L II +R D + +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSY--CDVNENLHKYST 208
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 1e-20
Identities = 50/264 (18%), Positives = 101/264 (38%), Gaps = 50/264 (18%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
++ ++N+ F Y + + + +N G +AV+G +G GKST++ L+ + P+ G+
Sbjct: 4 ALSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPII-FSTTIRENIIYARH----------NASEAE 1161
+ + +G V Q F+ ++ + ++ R +
Sbjct: 62 IEVYQS-------------IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVD-LTPGQKQRIAIARVVLKNAPILLLDEAS 1220
+A N H R L+ GQ+Q I IAR + ++LLDE +
Sbjct: 109 AMQALDYLNLTHL------------AKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156
Query: 1221 SSIESESSRVVQEALDTLIMGNKTTILIAH----RAAMMRHVDNIVVLNGGRIVEEGTHD 1276
S+++ + +V L L T++ + + ++LN T +
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVV--AIANKTLLLNKQNFKFGETRN 214
Query: 1277 SLLAKN-----GLYVRLMQPHYGK 1295
L ++N L + Q Y +
Sbjct: 215 ILTSENLTALFHLPMFEQQAQYKE 238
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 56/246 (22%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ N+ F Y + + + +A++G+NG GKS+++ L+ + P G++
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEP-ALLSLSIRDNIAYGR-----------DATLDQI 416
+ IG V Q + + S+ D + GR
Sbjct: 63 EVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 417 EEA---AKIAH-AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDE 472
+A + H A +SL G + Q I IARA+ ++LLDE
Sbjct: 110 MQALDYLNLTHLAKREFTSLSGG-------------QRQLI--LIARAIASECKLILLDE 154
Query: 473 VTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL------IRNADYIAVMDEGRLFEMG 526
T LD + V L L ++ ++ + + A+ ++++ G
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVV---FTTHQPNQVVAIANKTLLLNKQNFKF-G 210
Query: 527 THDELL 532
+L
Sbjct: 211 ETRNIL 216
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 37/216 (17%)
Query: 1074 NFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133
N ++ G ++G +G+GKS + LI P G+V L+G D+ L R +G
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIG 73
Query: 1134 LVQQEPIIFS-TTIRENIIYARHNASEAE----VKEAARIANAHHFISSLPHGYDTHVGM 1188
V Q+ +F ++ NI Y N E V+E A H + P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 1189 RGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES---ESSRV----VQEALDTLIMG 1241
L+ G++QR+A+AR ++ +LLLDE S+++ VQ D
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV---- 178
Query: 1242 NKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGT 1274
+ + H AAM+ D + V+ GRIVE+G
Sbjct: 179 --PILHVTHDLIEAAMLA--DEVAVMLNGRIVEKGK 210
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 32/206 (15%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLS- 398
L+G G+GKS + L+ P GEV L+G +I L E R IG V Q+ AL
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPH 84
Query: 399 LSIRDNIAYG-----RDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453
LS+ NIAYG R ++ E A+ I+ L + L+ ++
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLG----IAHLLDRKPAR-------LSGGERQ 133
Query: 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIII------ARRL 505
++++ARA+++ P +LLLDE +D + + + E L + + + A
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA--A 191
Query: 506 SLIRNADYIAVMDEGRLFEMGTHDEL 531
L AD +AVM GR+ E G EL
Sbjct: 192 ML---ADEVAVMLNGRIVEKGKLKEL 214
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 33/225 (14%)
Query: 1072 LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR-WLRN 1130
L S+ VN G ++G +GSGKST+I++I F G+V + +D+ N
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT--NKEPAELY 80
Query: 1131 HLGLVQ--QEPIIFST-TIRENIIYARHNASEAEV----------KEAARIANAHHFISS 1177
H G+V+ Q P T+ EN++ E+ + KE + A +
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 1178 --LPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE-ASSSIESESSRVVQEA 1234
L H YD G +L+ GQ + + I R ++ N ++++DE + +
Sbjct: 141 LKLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA-----HD 191
Query: 1235 LDTLIMG----NKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEGT 1274
+ ++ T ++I HR + + ++D++ V+ G+I+ EG
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 1e-17
Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 35/232 (15%)
Query: 327 LSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386
L G ++V ++G NGSGKS++I ++ F G V + ++I N +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA-ELYH 81
Query: 387 IGLV-T-QEPALLS-LSIRDNIAYGRDATLDQI-----------EEAAKIAHAHTFISS- 431
G+V T Q P L +++ +N+ G + +E + A +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 432 -LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALD 490
L Y+ + G L+ Q + I RA++ NP ++++DE G+ A D
Sbjct: 142 KLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP------GLAHD 191
Query: 491 LLML-------GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLAT 534
+ G + +II RL ++ N D++ VM G++ G +E +
Sbjct: 192 IFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-17
Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 60/252 (23%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
I +KNV + +V+ L N ++ + G+ ++G SG+GK+T + +I P G+
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEP------IIFST-------TIRENIIYARHNA-- 1157
+ D R + G + P ++F T T ENI + N
Sbjct: 62 LYFDDRLV---------ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM 112
Query: 1158 SEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213
S+ E V+E A+I + HH ++ P +L+ Q+QR+A+AR ++K+ +
Sbjct: 113 SKEEIRKRVEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSL 161
Query: 1214 LLLDEASS--------SIESESSRVVQEALDTLIMGNKTTILIAH--RAAM-MRHVDNIV 1262
LLLDE S S + VQ L T ++++H + D +
Sbjct: 162 LLLDEPFSNLDARMRDSARALVKE-VQSRLGV------TLLVVSHDPADIFAI--ADRVG 212
Query: 1263 VLNGGRIVEEGT 1274
VL G++V+ G
Sbjct: 213 VLVKGKLVQVGK 224
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 5e-10
Identities = 53/251 (21%), Positives = 108/251 (43%), Gaps = 52/251 (20%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I +NV + + ++ L + + + ++G +G+GK++ + ++ P+ GE
Sbjct: 3 RIIVKNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 368 VLLDGENIKNLKLEWLRSQ---IGLVTQEPALL-SLSIRDNIAYG---RDATLDQIE--- 417
+ D + + + + IG+V Q AL +L+ +NIA+ + ++I
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 418 -EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGG 476
E AKI I + L+ Q+ ++++ARA++ +PS+LLLDE
Sbjct: 122 EEVAKILD----IHHVLN-------HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 477 LDFEAERAVQEALDLLMLGRSTII-IARRL---------------SLIRNADYIAVMDEG 520
LD A R+ + + RL ++ AD + V+ +G
Sbjct: 171 LD--ARMRDS------A--RALVKEVQSRLGVTLLVVSHDPADIFAI---ADRVGVLVKG 217
Query: 521 RLFEMGTHDEL 531
+L ++G ++L
Sbjct: 218 KLVQVGKPEDL 228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 2e-17
Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 42/240 (17%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+IE V+ YP + S ++ G+ V ++G SGSGK+TI+ LI P G
Sbjct: 14 TIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD 71
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYA--RHNASEAE----VKEA 1165
V + G+ + +L + ++GLV Q +F T+ +N+ + + E V+E
Sbjct: 72 VWIGGKRVT--DLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL 129
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS---- 1221
R + + PH +L+ GQ+QR+A+AR + +LL DE +
Sbjct: 130 LRFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDT 178
Query: 1222 ----SIESESSRVVQEALDTLIMGNKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGT 1274
+ + + V + + T++ + H A + D ++VL+ G + + GT
Sbjct: 179 QIRRELRTFVRQ-VHDEMGV------TSVFVTHDQEEALEVA--DRVLVLHEGNVEQFGT 229
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 3e-16
Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 42/242 (17%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IEF V Y + G + + V L+G +GSGK++I+ L+ PT G+V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG-RDATLDQIEEAAKIAHAH 426
+ G+ + +L + + +GLV Q AL +++ DN+++G R+ + + E A++
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVREL- 129
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIK-LS--------IARAVLLNPSILLLDEVTGGL 477
L + A + LS +ARA+ P +LL DE +
Sbjct: 130 -----LR-----FMRLESYA---NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
Query: 478 DFEAERAVQEALDLL--MLGRSTIII------ARRLSLIRNADYIAVMDEGRLFEMGTHD 529
D + R ++ + + +G +++ + A L + AD + V+ EG + + GT +
Sbjct: 177 DTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA--LEV---ADRVLVLHEGNVEQFGTPE 231
Query: 530 EL 531
E+
Sbjct: 232 EV 233
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-16
Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 43/242 (17%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
++ + ++ + + P VL++ SL ++ G+ + ++G SG GK+T++ + F P +G+
Sbjct: 4 ALHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGE 60
Query: 1113 VLLDGRDLKLYNLR---WLRNHLGLVQQEPIIF-STTIRENIIY--ARHNASEAEVKEAA 1166
+ L G+ + N R LG + QE ++F T+ NI Y A+ +
Sbjct: 61 ISLSGKTIFSKNTNLPVRERR-LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQER--Q 117
Query: 1167 RIANA------HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEAS 1220
RI PH +L+ GQ+QR A+AR + + ++LLDE
Sbjct: 118 RIEAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPF 166
Query: 1221 SSIES---ESSRV----VQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVVLNGGRIVEE 1272
S+++ R A + + ++H R +++ D I V+ GRI++
Sbjct: 167 SALDEQLRRQIREDMIAALRANGK------SAVFVSHDREEALQYADRIAVMKQGRILQT 220
Query: 1273 GT 1274
+
Sbjct: 221 AS 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-14
Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 45/245 (18%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ ++ S+ P+L+ L++ + + ++G +G GK++++ + F P GE+
Sbjct: 5 LHIGHLSKSF---QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 369 LLDGENIKNLKLEWL---RSQIGLVTQEPALL-SLSIRDNIAYG-RDATLDQIEEAAKIA 423
L G+ I + K L ++G + QE L L++ NIAYG + +E +I
Sbjct: 62 SLSGKTIFS-KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIK-LS--------IARAVLLNPSILLLDEVT 474
LE G + LA + LS +ARA+ +P ++LLDE
Sbjct: 121 AM------LE-----LTGISELA---GRYPHELSGGQQQRAALARALAPDPELILLDEPF 166
Query: 475 GGLDFEAERAVQEAL-DLLM-LGRSTIII------ARRLSLIRNADYIAVMDEGRLFEMG 526
LD + R ++E + L G+S + + A L AD IAVM +GR+ +
Sbjct: 167 SALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA--LQY---ADRIAVMKQGRILQTA 221
Query: 527 THDEL 531
+ EL
Sbjct: 222 SPHEL 226
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 4e-15
Identities = 76/507 (14%), Positives = 138/507 (27%), Gaps = 154/507 (30%)
Query: 237 RFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLYEMISRSSSTTN 296
L + E+V +L N Y F I E S T
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVL--------RIN-YKFLMSPIK----TEQRQPSMMTRM 111
Query: 297 YDGNTLPSVHGNIEF--RNVYFSYLSRPEIPIL---SGFYLTVPAKKAVALVGRNGSGKS 351
Y + N F NV SR + P L PAK V + G GSGK+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNV-----SRLQ-PYLKLRQALLELRPAKN-VLIDGVLGSGKT 164
Query: 352 SIIPLMERFYDPTLGEVLLDGENIKNL--KLEWLRSQIGLVTQEPALLSLSIRDNIAYGR 409
+ +V L + + K+ WL + + L + + Y
Sbjct: 165 WVA-----------LDVCLSYKVQCKMDFKIFWLN--LKNCNSPETV--LEMLQKLLYQI 209
Query: 410 DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILL 469
D + H+ + + + +++ + N +L+
Sbjct: 210 DPNWTSRSD-----HSSNIKLRIH--------------SIQAELRRLLKSKPYEN-CLLV 249
Query: 470 LDEVTGGLDFEAERAVQEALDL----LMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEM 525
L V A +L L+ R + + +I++
Sbjct: 250 LLNV-------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTL-- 298
Query: 526 GTHDELLATGDLYAELLKCEEAAKLP------------------RRMPVR--NYKETSTF 565
T DE+ L + L C LP R N+K +
Sbjct: 299 -TPDEVK---SLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 566 QIEKDSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGM 625
++ +S + EP+ + + R+ ++ P + +LS ++ +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKM----FDRLSVFPP-----SAHIPTILLS-----LIWFDV 399
Query: 626 PMDAADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSH 685
+ D + + +L K S L+ PK
Sbjct: 400 I-----------KSDVMVV-VNKLHK----YS----------------LVEKQPKESTIS 427
Query: 686 SQTFSRPHSHSDDFPTKVREEESKHQK 712
S + K+ E + H+
Sbjct: 428 I------PSIYLELKVKLENEYALHRS 448
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 3e-10
Identities = 108/820 (13%), Positives = 195/820 (23%), Gaps = 322/820 (39%)
Query: 517 MDEGRLFEMGTHDELLATGDL-------YAELLKCEEAAKLPRRMPVRNYKETSTFQIEK 569
MD FE G H D+ + + C++ +P+ I
Sbjct: 7 MD----FETGEHQ--YQYKDILSVFEDAFVDNFDCKDVQDMPK-------------SILS 47
Query: 570 DSSASHSFQEPSSPKMLKSPSLQRVGIYRPTDGAFDSQESPKVLSPPSEKMLENGMPMDA 629
H G R QE +K +E + ++
Sbjct: 48 KEEIDHIIMSKD----------AVSGTLRLFWTLLSKQEEM------VQKFVEEVLRINY 91
Query: 630 ADKEPSIRRQDSFEMRLPELPKIDVHSSNRQTSNGSDPESPISPLLTSDPKNERSHSQTF 689
+ E R P + + N + + +
Sbjct: 92 ----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----------------V 131
Query: 690 SRPHSHSDDFPTKVREEESKHQKAPSFWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAY 749
SR + K+R+ L EL A+ + + G +G G
Sbjct: 132 SRLQPY-----LKLRQ------------ALLELRPAKNV-LIDGVLG---SG-------- 162
Query: 750 VIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVAN--FLQHFYFGI----MGEKM 803
K + + V + F I +
Sbjct: 163 -----------------------KTWV------ALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 804 TERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVI 863
+ M +L + + + + +R+ + L ++
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSI-------QAELRRLLK------ 239
Query: 864 VAVIIGMLLEWRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNI 923
K + LVL + V+N
Sbjct: 240 ------------------------------------------SKPYENCLLVLLN-VQNA 256
Query: 924 YTVVAF---C---------------AGNKVMELYRLQLKKIFTKSFLHGMAIGFAFGFSQ 965
AF C + + T + + +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-------LLK 309
Query: 966 FLLF--------AC--NALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPF--GL 1013
+L N L +S+RDG + K T ++E L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVNCDKLTT--IIESSLNVL 366
Query: 1014 APYILKRRKSLISVFEIIDRVPKIDPDDSSAVK-PPNVYGSI--ELKNVDFCYPSRPEVL 1070
P ++ +SVF P P + I ++ D V+
Sbjct: 367 EPAEYRKMFDRLSVF----------PPS---AHIPTILLSLIWFDVIKSD------VMVV 407
Query: 1071 V--LSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL 1128
V L +SL V K + IS+ + L+ + +KL N L
Sbjct: 408 VNKLHKYSL------------VEKQPKESTISI----PS-----IYLELK-VKLENEYAL 445
Query: 1129 RNHLGLVQQEPII-------FSTTIRENIIY---ARH--NASEAEVKE------------ 1164
H +V I + Y H N E
Sbjct: 446 --HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 1165 AARIAN---AHHFISSLPH------GYDTHVGMRGVDLTPGQKQRI-AIARVVLKNAPIL 1214
+I + A + S+ + Y ++ D P ++ + AI + K L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYI----CDNDPKYERLVNAILDFLPKIEENL 559
Query: 1215 LLDEASSSIESESSRVVQEALDTLIMGNKTTILI-AHRAA 1253
I S+ + +++ AL M I AH+
Sbjct: 560 --------ICSKYTDLLRIAL----MAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 8e-07
Identities = 53/333 (15%), Positives = 95/333 (28%), Gaps = 114/333 (34%)
Query: 974 LLLWY---TGKSVRDGYMDLPTAL-KEYMVFSFATFALVEPFGLAPYILKRRKSLISVFE 1029
L W + + +++ L Y F L+ P R+ S+++
Sbjct: 66 RLFWTLLSKQEEMVQKFVE--EVLRINY---KF----LMSPIKTEQ----RQPSMMTRMY 112
Query: 1030 IIDRVPKIDP--DDSSAVKPPNVYGSIELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVA 1086
I R D +D+ NV SR + L L L++ + V
Sbjct: 113 IEQR----DRLYNDNQVFAKYNV--------------SRLQPYLKLRQALLELRPAKNVL 154
Query: 1087 VVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLR--WLRNHLGLVQQEPIIFST 1144
+ GV GSGK+ VA V L + + + WL +L +
Sbjct: 155 IDGVLGSGKTW-----------VALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVL-- 199
Query: 1145 TIRENIIY-ARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAI 1203
+ + ++Y N + S++ + + R +
Sbjct: 200 EMLQKLLYQIDPNWTSRS-----------DHSSNIKLRIH--------SIQ--AELRRLL 238
Query: 1204 ARVVLKNAPILLLDEASSSIESESSRVVQEALD----TLIMGNKTTILIAHRAAMMRHVD 1259
+N +L+L +++ A + L+ TT R
Sbjct: 239 KSKPYENC-LLVLLNVQ------NAKAW-NAFNLSCKILL----TT----------RFKQ 276
Query: 1260 NIVVLNGGRIVE-------EG-THD---SLLAK 1281
L+ T D SLL K
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-04
Identities = 66/509 (12%), Positives = 138/509 (27%), Gaps = 165/509 (32%)
Query: 41 GGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLL 100
+F W+ + +Q LL Q + + ++ + +
Sbjct: 182 FKIF---------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--- 229
Query: 101 IQSALSEKVGNYIHNMATFFSGLAI-----------AF-VNCWQIALITLCTGPFIVAAG 148
IQ+ L + + + L + AF ++C +I L+T T V
Sbjct: 230 IQAELRRLLKSKPYENC-----LLVLLNVQNAKAWNAFNLSC-KI-LLT--TRFKQVTDF 280
Query: 149 GISN---------------------IFLHRLAENIQDAYAEAASIAEQAVSYIRTL---Y 184
+ + L L QD E + + +S I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 185 AFTNETLAKYSY---ATSLQATLRY---GILISLVQGLGLGFTYGLAICSCALQ-LW--- 234
T + + T ++++L + L + F I + L +W
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDV 399
Query: 235 ----VGRFLVT-HNKA----HGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLY 285
V + H + E ++ ++ L L N Y+ + + Y +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE---LKVKLENEYALHRSIVDHYNIP 456
Query: 286 EMISRSSSTTNYDGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGR 345
+ +D + L + ++S++ G +L K
Sbjct: 457 K---------TFDSDDLIPPY----LDQYFYSHI---------GHHL----KNI------ 484
Query: 346 NGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI---GLVTQEPALLSLSIR 402
+ L + LD +L +I + +++
Sbjct: 485 ---EHPERMTLFRMVF--------LD--------FRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 403 DNIAYGR-----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSI 457
Y D +++ A F+ +E L ++ + L I
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAIL-----DFLPKIE---------ENLICSKYTDL-LRI 570
Query: 458 ARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
A L+ + EA + VQ
Sbjct: 571 A---LMAED--------EAIFEEAHKQVQ 588
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-14
Identities = 59/237 (24%), Positives = 107/237 (45%), Gaps = 43/237 (18%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE++++ + + L N SLKV G+ ++G +G+GK+ + LI F+ P +G++
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1114 LLDGRDLKLYNLR-WLRNHLGLVQQEPIIFS-TTIRENIIY---ARHNASEAEVKEAARI 1168
LLDG+D+ +L + + V Q +F +++N+ + + V + AR
Sbjct: 58 LLDGKDVT--DLSPEKHD-IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD 114
Query: 1169 ANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS------- 1221
H + P L+ G++QR+A+AR ++ N ILLLDE S
Sbjct: 115 LKIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163
Query: 1222 -SIESESSRVVQEALDTLIMGNKTTILIAH---RAAMMRHVDNIVVLNGGRIVEEGT 1274
+ S + + T + I H A +M D I V+ G++++ G
Sbjct: 164 ENAREMLSV-LHKKNKL------TVLHITHDQTEARIMA--DRIAVVMDGKLIQVGK 211
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 3e-13
Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 51/244 (20%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE ++ + + L L V + + ++G G+GK+ + L+ F+ P G +
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLS-LSIRDNIAYG----RDATLDQIEEAAKIA 423
LLDG+++ +L E + I V Q +L ++++ N+ +G + ++ + A+
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 424 HAHTFISSLEKGYETQVGRAGLALTEEQKIKLS--------IARAVLLNPSILLLDEVTG 475
I L LS +ARA++ NP ILLLDE
Sbjct: 116 K----IEHLLDRNPLT---------------LSGGEQQRVALARALVTNPKILLLDEPLS 156
Query: 476 GLDFEAERAVQEALDLL--MLGRSTIII------ARRLSLIRNADYIAVMDEGRLFEMGT 527
LD + +E L +L + + I A + AD IAV+ +G+L ++G
Sbjct: 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA--RIM---ADRIAVVMDGKLIQVGK 211
Query: 528 HDEL 531
+E+
Sbjct: 212 PEEI 215
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 71.7 bits (177), Expect = 8e-14
Identities = 57/235 (24%), Positives = 108/235 (45%), Gaps = 25/235 (10%)
Query: 310 EFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369
E ++++ Y I + G L VP + V L+G NG+GK++ + + G+++
Sbjct: 8 EVQSLHVYY---GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 370 LDGENIKNLKLEWL-RSQIGLVTQEPALL-SLSIRDNI---AYGRDATLDQIEEAAKIAH 424
+G++I N + R I LV + + L++ +N+ AY R D+ +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK---DKEGIKRDLEW 121
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
+ L+ E G EQ++ L+I RA++ P +L++DE + GL A
Sbjct: 122 IFSLFPRLK---ERLKQLGGTLSGGEQQM-LAIGRALMSRPKLLMMDEPSLGL---APIL 174
Query: 485 VQEALDLL-MLGRS--TIIIAR---RLSLIRNADYIAVMDEGRLFEMGTHDELLA 533
V E +++ + + TI++ +L + A Y V++ G++ G ELL
Sbjct: 175 VSEVFEVIQKINQEGTTILLVEQNALGAL-KVAHYGYVLETGQIVLEGKASELLD 228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 58/245 (23%), Positives = 101/245 (41%), Gaps = 43/245 (17%)
Query: 1055 ELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114
E++++ Y + + + LKV GQ V ++G +G+GK+T +S I G+++
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 1115 LDGRDL-KLYNLRWLRNHLGLVQQEPIIFST-TIRENII---YARHNASEAEVKEAARIA 1169
+G+D+ R + LV + IF T+ EN++ Y R + +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGI----KRDLE 120
Query: 1170 NAHHFISSLPHGYDTHVG-MRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESS 1228
L G + G G++Q +AI R ++ +L++DE S + +
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSG-----GEQQMLAIGRALMSRPKLLMMDEPSLGL---AP 172
Query: 1229 RVVQEALDTLIMGNK--TTIL-----------IAHRAAMMRHVDNIVVLNGGRIVEEGTH 1275
+V E + + N+ TTIL +AH VL G+IV EG
Sbjct: 173 ILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYG---------YVLETGQIVLEGKA 223
Query: 1276 DSLLA 1280
LL
Sbjct: 224 SELLD 228
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 8e-13
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 67/252 (26%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
I+L+N+ + + L+N +LK+ G+ +A++G SGSGKST++ I Y P +G+
Sbjct: 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEP------IIFST-------TIRENIIYA--RHNA 1157
+ D +D+ L P ++F T+ +NI + A
Sbjct: 60 IYFDEKDV---------TEL-----PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA 105
Query: 1158 SEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213
E V+E A++ + ++ P L+ GQ+QR+AIAR ++K +
Sbjct: 106 PREEIDKKVREVAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEV 154
Query: 1214 LLLDEASS--------SIESESSRVVQEALDTLIMGNKTTILIAH--RAAM-MRHVDNIV 1262
LLLDE S + +E R+ +E L TT+ + H A+ M D I
Sbjct: 155 LLLDEPLSNLDALLRLEVRAELKRLQKE-LGI------TTVYVTHDQAEALAM--ADRIA 205
Query: 1263 VLNGGRIVEEGT 1274
V+ G I++ GT
Sbjct: 206 VIREGEILQVGT 217
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 64/261 (24%), Positives = 112/261 (42%), Gaps = 79/261 (30%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I+ N+ + L+ L + + +AL+G +GSGKS+++ + Y PT G+
Sbjct: 3 EIKLENIVKKF---GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 368 VLLDGENIKNL--KLEWLRSQIGLVTQEPALL-SLSIRDNIAYG---RDATLDQIE---- 417
+ D +++ L K R+ +GLV Q AL +++ NIA+ R A ++I+
Sbjct: 60 IYFDEKDVTELPPK---DRN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR 115
Query: 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTE--EQKIK-LS--------IARAVLLNPS 466
E AK+ L + + + LS IARA++ P
Sbjct: 116 EVAKM----------------------LHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE 153
Query: 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTII-IARRL---------------SLIRN 510
+LLLDE LD A ++ + R+ + + + L ++
Sbjct: 154 VLLLDEPLSNLD--ALLRLE------V--RAELKRLQKELGITTVYVTHDQAEALAM--- 200
Query: 511 ADYIAVMDEGRLFEMGTHDEL 531
AD IAV+ EG + ++GT DE+
Sbjct: 201 ADRIAVIREGEILQVGTPDEV 221
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 7e-11
Identities = 62/252 (24%), Positives = 103/252 (40%), Gaps = 67/252 (26%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
SI + N+ + V + S +V G+ VA++G SG GK+T + ++ Y P +G+
Sbjct: 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEP------IIFST-------TIRENIIYARHNA-- 1157
+ D + N + P ++F T+ ENI +
Sbjct: 60 IYFDDVLV---------NDI-----PPKYREVGMVFQNYALYPHMTVFENIAFPLRARRI 105
Query: 1158 SEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213
S+ E V E AR + + P L+ GQ+QR+A+AR ++K +
Sbjct: 106 SKDEVEKRVVEIARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKV 154
Query: 1214 LLLDEASS--------SIESESSRVVQEALDTLIMGNKTTILIAH--RAAM-MRHVDNIV 1262
LL DE S + +E +Q+ L T++ + H AM M I
Sbjct: 155 LLFDEPLSNLDANLRMIMRAEIKH-LQQELGI------TSVYVTHDQAEAMTM--ASRIA 205
Query: 1263 VLNGGRIVEEGT 1274
V N G++V+ GT
Sbjct: 206 VFNQGKLVQYGT 217
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 60/261 (22%), Positives = 108/261 (41%), Gaps = 79/261 (30%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+I N+ + ++ + G V + VAL+G +G GK++ + ++ Y PT GE
Sbjct: 3 SIRVVNLKKYF---GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 368 VLLDGENIKNL--KLEWLRSQIGLVTQEPALL-SLSIRDNIAYG---RDATLDQIE---- 417
+ D + ++ K ++G+V Q AL +++ +NIA+ R + D++E
Sbjct: 60 IYFDDVLVNDIPPK----YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTE--EQKIK-LS--------IARAVLLNPS 466
E A+ L + ++K LS +ARA++ P
Sbjct: 116 EIARK----------------------LLIDNLLDRKPTQLSGGQQQRVALARALVKQPK 153
Query: 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTII-IARRL---------------SLIRN 510
+LL DE LD A + M R+ I + + L ++
Sbjct: 154 VLLFDEPLSNLD--ANLRMI------M--RAEIKHLQQELGITSVYVTHDQAEAMTM--- 200
Query: 511 ADYIAVMDEGRLFEMGTHDEL 531
A IAV ++G+L + GT DE+
Sbjct: 201 ASRIAVFNQGKLVQYGTPDEV 221
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 56/252 (22%), Positives = 109/252 (43%), Gaps = 67/252 (26%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
++L+N+ + + ++ +L + G+ + ++G SG GK+T + +I +P G+
Sbjct: 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEP------IIFST-------TIRENIIYARHNA-- 1157
+ RD+ +L P ++F + T+ ENI +
Sbjct: 68 IYFGDRDV---------TYL-----PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF 113
Query: 1158 SEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPI 1213
+ E V+ AA + ++ P L+ GQ+QR+A+AR ++ +
Sbjct: 114 PKDEIDKRVRWAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDV 162
Query: 1214 LLLDEASS--------SIESESSRVVQEALDTLIMGNKTTILIAH--RAAM-MRHVDNIV 1262
LL+DE S ++ +E ++ Q+ L TTI + H AM M D I
Sbjct: 163 LLMDEPLSNLDAKLRVAMRAEIKKLQQK-LKV------TTIYVTHDQVEAMTM--GDRIA 213
Query: 1263 VLNGGRIVEEGT 1274
V+N G++++ G+
Sbjct: 214 VMNRGQLLQIGS 225
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 6e-10
Identities = 54/253 (21%), Positives = 100/253 (39%), Gaps = 63/253 (24%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+ L +V + V + SL+V G+ + ++G SG GK+T + +I +P GQ
Sbjct: 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1113 VLLDGRDLKLYNLRWLRNHLGLVQQEP-------IIFST-------TIRENIIYA--RHN 1156
+ + + + P ++F + T+ +NI +
Sbjct: 60 IYIGDKLV---------ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK 110
Query: 1157 ASEAE----VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP 1212
E V+E A + ++ P +L+ GQ+QR+A+ R +++
Sbjct: 111 VPRQEIDQRVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQ 159
Query: 1213 ILLLDEASS--------SIESESSRVVQEALDTLIMGNKTTILIAH--RAAM-MRHVDNI 1261
+ L+DE S + +E + +Q L TTI + H AM M D I
Sbjct: 160 VFLMDEPLSNLDAKLRVRMRAELKK-LQRQLGV------TTIYVTHDQVEAMTM--GDRI 210
Query: 1262 VVLNGGRIVEEGT 1274
V+N G + + G+
Sbjct: 211 AVMNRGVLQQVGS 223
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 8e-09
Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 37/233 (15%)
Query: 1045 VKPPNVYGSIELKNVDFCYPSRP--EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLI 1102
V P E +++ C S ++L+ L++ + + G +G GKST++ I
Sbjct: 422 VGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI 481
Query: 1103 ERFYDPVAGQVLLDGRDLKLYNLRWLRNHL--GLVQQEPIIF--STTIRENIIYARHNAS 1158
+ + + V+ + T++ + + +
Sbjct: 482 -------------ANGQVDGF---PTQEECRTVYVEHDIDGTHSDTSVLDFV----FESG 521
Query: 1159 EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDE 1218
+ F + L+ G K ++A+AR VL+NA ILLLDE
Sbjct: 522 VGTKEAIKDKLIEFGF---TDEMIAMPIS----ALSGGWKMKLALARAVLRNADILLLDE 574
Query: 1219 ASSSIESESSRVVQEALDTLIMGNKTTILIAH-RAAMMRHVDNIVVLNGGRIV 1270
++ +++ + + L+T T+I I+H + + I+ G ++
Sbjct: 575 PTNHLDTVNVAWLVNYLNTC---GITSITISHDSVFLDNVCEYIINYEGLKLR 624
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 5e-08
Identities = 42/178 (23%), Positives = 62/178 (34%), Gaps = 36/178 (20%)
Query: 319 LSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNL 378
L+ +L+ L + + + G NG GKS TL + +G+
Sbjct: 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKS------------TLMRAIANGQVDGFP 490
Query: 379 KLEWLRSQIGLVTQEPALL--SLSIRDNIAYGRDATLDQIEEA-----AKIAHAHTFISS 431
E R V + S+ D + T + I++ IS+
Sbjct: 491 TQEECR--TVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISA 548
Query: 432 LEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL 489
L G K+KL++ARAVL N ILLLDE T LD + L
Sbjct: 549 LSGG---------------WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 591
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 19/226 (8%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
E+ F E + + +A+ + + I + R E
Sbjct: 758 SEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTF 428
+N+ ++ + +++ + A + R + + +++ +A + F
Sbjct: 818 ECSFLLGENIGMKS-ERWVPMMSVDNAWIP---RGELVESHSKMVAEVDMKEALA-SGQF 872
Query: 429 ISSLEKGYETQVGRAGL-----------ALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
K E GL L+ QK+KL +A P +++LDE T L
Sbjct: 873 RPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYL 932
Query: 478 DFEAERAVQEALDLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522
D ++ A+ +AL III +N + + + +GR+
Sbjct: 933 DRDSLGALSKALK--EFEGGVIIITHSAEFTKNLTEEVWAVKDGRM 976
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 16/60 (26%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+++ N++F YP + +++ + + + +AV+G +G+GKST+I+++ P +G+V
Sbjct: 672 VKVTNMEFQYPGTSKPQ-ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 1192 DLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHR 1251
L+ GQK ++ +A + +++LDE ++ ++ +S + +AL I+I H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHS 957
Query: 1252 AAMMRHV-DNIVVLNGGRIV 1270
A +++ + + + GR+
Sbjct: 958 AEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
++ N+ F Y P ++ +A++G NG+GKS++I ++ PT GEV
Sbjct: 672 VKVTNMEFQY-PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 369 LLDGENIK 376
EN +
Sbjct: 731 YT-HENCR 737
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 9e-08
Identities = 24/179 (13%), Positives = 58/179 (32%), Gaps = 20/179 (11%)
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAE---VKEAARI 1168
+ LD + L L+ G ++ A E E
Sbjct: 160 VLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEG 219
Query: 1169 ANAHHFISSLPHGYDTHVGMRGVDLTP-----GQKQ------RIAIARVVLKNAPILLLD 1217
+ + + + V G + G++ R+A++ + +L+LD
Sbjct: 220 KYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILD 279
Query: 1218 EASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVL------NGGRIV 1270
E + ++ E R + ++ + IL++H + D+++ + + +V
Sbjct: 280 EPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVV 338
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEAL-DLLMLGRSTIIIARRLSLIRNA 511
+L+++ + S+L+LDE T LD E R + + L I+++ L A
Sbjct: 261 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320
Query: 512 DYI 514
D++
Sbjct: 321 DHV 323
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-07
Identities = 60/250 (24%), Positives = 101/250 (40%), Gaps = 73/250 (29%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLI---ERFYDPV 1109
S++L+NV + EV+V + +L ++ G+ V VG SG GKST++ +I E
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56
Query: 1110 AGQVLLDGRDLKLYNLRWLRNHLGLVQQEP------IIFST-------TIRENIIY---- 1152
+G + + + + N P ++F + ++ EN+ +
Sbjct: 57 SGDLFIGEKRM---------NDT-----PPAERGVGMVFQSYALYPHLSVAENMSFGLKL 102
Query: 1153 ARHNASEAE--VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210
A V + A + H + P L+ GQ+QR+AI R ++
Sbjct: 103 AGAKKEVINQRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAE 151
Query: 1211 APILLLDEASS--------SIESESSRVVQEALDTLIMGNKTTILIAH--RAAM-MRHVD 1259
+ LLDE S + E SR+ + L T I + H AM + D
Sbjct: 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKR-LGR------TMIYVTHDQVEAMTL--AD 202
Query: 1260 NIVVLNGGRI 1269
IVVL+ GR+
Sbjct: 203 KIVVLDAGRV 212
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKS---SIIPLMERFYDPTLGEVLLDGENIKNLKLE 381
IL G L V + A++G NGSGKS + + E Y+ T G V G+++ L E
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSPE 92
Query: 382 WLRSQIGL 389
R+ G+
Sbjct: 93 -DRAGEGI 99
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 325 PILSGFYLTVPAKKAVALVGRNGSGKS---SIIPLMERFYDPTLGEVLLDGENIKNLKLE 381
IL G L VP + AL+G NG+GKS I+ Y GE+LLDGENI L +
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELSPD 75
Query: 382 WLRSQIGL 389
R++ GL
Sbjct: 76 -ERARKGL 82
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 9e-05
Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 58/242 (23%)
Query: 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLI---ERFYDPVAGQVLLDGRD-LKL---- 1122
+L +L V G+ A++G +G+GKST+ ++ Y G++LLDG + L+L
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELSPDE 76
Query: 1123 -----------Y--------NLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVK 1163
Y +LR L + + E + +
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREV----GVAEFWTKVKKALELLDWD 132
Query: 1164 E--AARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
E +R N G G G+K+R I ++++ +LDE S
Sbjct: 133 ESYLSRYLN---------------EGFSG-----GEKKRNEILQLLVLEPTYAVLDETDS 172
Query: 1222 SIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV--DNIVVLNGGRIVEEGTHDSLL 1279
++ ++ +VV ++ + N ++I H ++ ++ D + V+ GR+V G + L
Sbjct: 173 GLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE--L 230
Query: 1280 AK 1281
A
Sbjct: 231 AL 232
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)
Query: 400 SIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALT-------EEQK 452
+ ++ + + E + ++ + + E V G E
Sbjct: 6 AREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIA 65
Query: 453 IKL----SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSL 507
+ L +++ + S+L+LDE T LD E R + ++ + I+++ L
Sbjct: 66 LGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 125
Query: 508 IRNADYI 514
AD++
Sbjct: 126 KDAADHV 132
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1303 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-91 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-81 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-85 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-76 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-84 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-75 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-76 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-67 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-74 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-68 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-68 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-62 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-45 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-40 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-44 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-34 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-39 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-31 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-38 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-32 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-38 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-32 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-34 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-30 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-34 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 8e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-32 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-32 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-25 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-32 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-31 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-31 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-21 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-31 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-27 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-30 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-23 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-17 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-09 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-08 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 7e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 7e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 291 bits (747), Expect = 9e-91
Identities = 123/251 (49%), Positives = 172/251 (68%), Gaps = 2/251 (0%)
Query: 1040 DDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTII 1099
+ A G I++ +V F Y E +L + +L + G+TVA VG+SG GKST+I
Sbjct: 3 NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61
Query: 1100 SLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASE 1159
+LI RFYD +GQ+L+DG ++K + LRN +GLVQQ+ I+FS T++ENI+ R A++
Sbjct: 62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121
Query: 1160 AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
EV EAA++ANAH FI +LP GYDT VG RGV L+ GQKQR++IAR+ L N PIL+LDEA
Sbjct: 122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181
Query: 1220 SSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
+S+++ ES ++QEALD L ++TT+++AHR + + H D IVV+ G IVE GTH L+
Sbjct: 182 TSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 240
Query: 1280 AKNGLYVRLMQ 1290
AK G Y L
Sbjct: 241 AKQGAYEHLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 264 bits (676), Expect = 4e-81
Identities = 113/241 (46%), Positives = 157/241 (65%), Gaps = 2/241 (0%)
Query: 302 LPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361
+ G I+ +V F Y E PIL L++ + VA VG +G GKS++I L+ RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 362 DPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAA 420
D T G++L+DG NIK+ LR+QIGLV Q+ L S ++++NI GR AT +++ EAA
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 421 KIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFE 480
K+A+AH FI +L +GY+T+VG G+ L+ QK +LSIAR L NP IL+LDE T LD E
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 481 AERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540
+E +QEALD+L R+T+I+A RLS I +AD I V++ G + E GTH EL+A Y
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEH 248
Query: 541 L 541
L
Sbjct: 249 L 249
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 275 bits (705), Expect = 5e-85
Identities = 123/255 (48%), Positives = 170/255 (66%), Gaps = 3/255 (1%)
Query: 1041 DSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIIS 1100
D G +E +NV F YP R EV L N +LK+ G+TVA+VG SGSGKSTI S
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 1101 LIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNA-SE 1159
LI RFYD G +L+DG DL+ Y L LRN + LV Q +F+ T+ NI YAR S
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 1160 AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
+++EAAR+A A FI+ + +G DT +G GV L+ GQ+QRIAIAR +L+++PIL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 1220 SSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLL 1279
+S++++ES R +Q ALD L N+T+++IAHR + + D IVV+ G IVE GTH LL
Sbjct: 180 TSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 238
Query: 1280 AKNGLYVRLMQPHYG 1294
A++G+Y +L + +G
Sbjct: 239 AQHGVYAQLHKMQFG 253
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 251 bits (643), Expect = 1e-76
Identities = 112/245 (45%), Positives = 165/245 (67%), Gaps = 3/245 (1%)
Query: 301 TLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360
+ G++EFRNV F+Y R E+P L L +PA K VALVGR+GSGKS+I L+ RF
Sbjct: 6 VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 64
Query: 361 YDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEE 418
YD G +L+DG +++ L LR+Q+ LV+Q L + ++ +NIAY R + + +QIEE
Sbjct: 65 YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE 124
Query: 419 AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLD 478
AA++A+A FI+ ++ G +T +G G+ L+ Q+ +++IARA+L + IL+LDE T LD
Sbjct: 125 AARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 184
Query: 479 FEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLY 538
E+ERA+Q ALD L R++++IA RLS I AD I V+++G + E GTH ELLA +Y
Sbjct: 185 TESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVY 244
Query: 539 AELLK 543
A+L K
Sbjct: 245 AQLHK 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 272 bits (696), Expect = 6e-84
Identities = 92/248 (37%), Positives = 150/248 (60%), Gaps = 2/248 (0%)
Query: 1045 VKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER 1104
+ P ++ G ++ ++V F YP+RP+VLVL + + G+ A+VG +GSGKST+ +L++
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 1105 FYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYA-RHNASEAEVK 1163
Y P GQ+LLDG+ L Y R+L + V QEP +F +++ENI Y + E+
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
AA + AH FIS LP GYDT V G L+ GQ+Q +A+AR +++ +L+LD+A+S++
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 1224 ESESSRVVQEALDTLI-MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKN 1282
++ S V++ L +++ +LI +++ D+I+ L GG I E GTH L+ K
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 242
Query: 1283 GLYVRLMQ 1290
G Y ++Q
Sbjct: 243 GCYWAMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 247 bits (633), Expect = 3e-75
Identities = 87/243 (35%), Positives = 150/243 (61%), Gaps = 4/243 (1%)
Query: 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPT 364
+ G ++F++V F+Y +RP++ +L G T+ + ALVG NGSGKS++ L++ Y PT
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 365 LGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYG--RDATLDQIEEAAKI 422
G++LLDG+ + + +L Q+ V QEP + S+++NIAYG + T+++I AA
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
+ AH+FIS L +GY+T+V AG L+ Q+ +++ARA++ P +L+LD+ T LD ++
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 483 RAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540
V++ L RS ++I + LSL+ AD+I ++ G + E GTH +L+ Y
Sbjct: 188 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247
Query: 541 LLK 543
+++
Sbjct: 248 MVQ 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 249 bits (637), Expect = 5e-76
Identities = 101/238 (42%), Positives = 150/238 (63%), Gaps = 3/238 (1%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I +N+ F Y V +L N +L + G+ + +VG SGSGKST+ LI+RFY P GQV
Sbjct: 2 ITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHH 1173
L+DG DL L + WLR +G+V Q+ ++ + +I +NI A S +V AA++A AH
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1174 FISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQE 1233
FIS L GY+T VG +G L+ GQ+QRIAIAR ++ N IL+ DEA+S+++ ES V+
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1234 ALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQ 1290
+ + +T I+IAHR + +++ D I+V+ G+IVE+G H LL++ LY L Q
Sbjct: 181 NMHKI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 225 bits (575), Expect = 1e-67
Identities = 99/238 (41%), Positives = 150/238 (63%), Gaps = 3/238 (1%)
Query: 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
+I FRN+ F Y IL L++ + + +VGR+GSGKS++ L++RFY P G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 368 VLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAH 426
VL+DG ++ WLR Q+G+V Q+ LL+ SI DNI+ +++++ AAK+A AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
FIS L +GY T VG G L+ Q+ +++IARA++ NP IL+ DE T LD+E+E +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 487 EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLK 543
+ + GR+ IIIA RLS ++NAD I VM++G++ E G H ELL+ LY+ L +
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 245 bits (626), Expect = 2e-74
Identities = 92/244 (37%), Positives = 147/244 (60%), Gaps = 4/244 (1%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ ++VDF Y ++L + S + +A G SG GKSTI SL+ERFY P AG++
Sbjct: 2 LSARHVDFAYDDSEQIL--RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN-ASEAEVKEAARIANAH 1172
+DG+ + +L R+ +G V Q+ I + TIREN+ Y ++ ++ + +A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQ 1232
F+ ++P +T VG RGV ++ GQ+QR+AIAR L+N IL+LDEA++S++SES +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1233 EALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPH 1292
+ALD+L M +TT++IAHR + + D I + G+I G H+ L+A + LY + +
Sbjct: 180 KALDSL-MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
Query: 1293 YGKG 1296
G
Sbjct: 239 LTVG 242
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 227 bits (581), Expect = 2e-68
Identities = 98/237 (41%), Positives = 148/237 (62%), Gaps = 4/237 (1%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ R+V F+Y IL +A G +G GKS+I L+ERFY PT GE+
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAH 426
+DG+ I N+ LE RSQIG V+Q+ A+++ +IR+N+ YG D T + + + +A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
+F+ ++ T+VG G+ ++ Q+ +L+IARA L NP IL+LDE T LD E+E VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 487 EALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLK 543
+ALD LM GR+T++IA RLS I +AD I +++G++ G H+EL+AT LYA+ +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 230 bits (587), Expect = 1e-68
Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 23/263 (8%)
Query: 1027 VFEIIDRVPKIDPDDSSAVKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVA 1086
E++++V + + D K + ++ ++ C P VL N +L + G+ +A
Sbjct: 16 FGELLEKVQQSNGDR----KHSSDENNVSFSHL--CLVGNP---VLKNINLNIEKGEMLA 66
Query: 1087 VVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTI 1146
+ G +GSGK++++ LI + G + GR + Q I TI
Sbjct: 67 ITGSTGSGKTSLLMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTI 113
Query: 1147 RENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206
+ENII+ + E K + I+ +T +G GV L+ GQ+ RI++AR
Sbjct: 114 KENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172
Query: 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266
V K+A + LLD ++ + V E+ +M NKT IL+ + +R D I++L+
Sbjct: 173 VYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ 232
Query: 1267 GRIVEEGTHDSLLAKNGLYVRLM 1289
G GT L + + +
Sbjct: 233 GSSYFYGTFSELQSLRPDFSSKL 255
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 212 bits (541), Expect = 2e-62
Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 19/246 (7%)
Query: 298 DGNTLPSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLM 357
S N+ F ++ P+L L + + +A+ G GSGK+S++ L+
Sbjct: 28 GDRKHSSDENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI 82
Query: 358 ERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQIE 417
+ + G + G ++ +Q ++ +I++NI +G + +
Sbjct: 83 LGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYK 129
Query: 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477
K I+ + T +G G+ L+ Q+ ++S+ARAV + + LLD G L
Sbjct: 130 SVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189
Query: 478 DFEAERAVQEA-LDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGD 536
D E V E+ + LM ++ I++ ++ +R AD I ++ +G + GT EL +
Sbjct: 190 DVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 249
Query: 537 LYAELL 542
++ L
Sbjct: 250 DFSSKL 255
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 162 bits (411), Expect = 1e-45
Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Query: 1054 IELKNVDFCYPSR-PEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
I+LKNV Y + L N +L + G+ V+++G SGSGKST++++I P G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1113 VLLDGRDLKLYN----LRWLRNHLGLVQQEPIIF-STTIRENIIYAR--HNASEAEVKEA 1165
V +D + + R+ +G V Q+ + T EN+ +E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1166 ARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIES 1225
+ A ++ L + H + L+ GQ+QR+AIAR + N PI+L D+ + +++S
Sbjct: 122 RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 1226 ESSRVVQEALDTLI-MGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274
++ + + L L KT +++ H + R + I+ L G + E
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 145 bits (367), Expect = 7e-40
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 14/230 (6%)
Query: 309 IEFRNVYFSYLSR-PEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I+ +NV +Y I L L + + V+++G +GSGKS+++ ++ PT GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 368 VLLDGENIKNLK----LEWLRSQIGLVTQEPALL-SLSIRDNIAYG---RDATLDQIEEA 419
V +D +L + R +IG V Q+ L+ L+ +N+ + EE
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 420 AKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDF 479
K A ++ LE+ + L+ Q+ +++IARA+ NP I+L D+ TG LD
Sbjct: 122 RKRALECLKMAELEERFANHKPN---QLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 480 EAERAVQEALDLL--MLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527
+ + + L L G++ +++ +++ R + I + +G +
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 159 bits (403), Expect = 1e-44
Identities = 53/241 (21%), Positives = 103/241 (42%), Gaps = 27/241 (11%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++L++V E L S +V G+ + +VG +G+GKST+++ + G +
Sbjct: 4 MQLQDVA-------ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEP-IIFSTTIRENIIYARHNASEAEVKEAARIANAH 1172
G+ L+ ++ L H + Q+ F+T + + +H+ + E+ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA--- 112
Query: 1173 HFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP-------ILLLDEASSSIES 1225
D +G L+ G+ QR+ +A VVL+ P +LLLDE +S++
Sbjct: 113 -------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEGTHDSLLAKNGL 1284
+ + L L ++ +H +RH +L GG+++ G + +L L
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 225
Query: 1285 Y 1285
Sbjct: 226 A 226
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 128 bits (323), Expect = 7e-34
Identities = 46/242 (19%), Positives = 95/242 (39%), Gaps = 29/242 (11%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
++ ++V S L V A + + LVG NG+GKS+++ M G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGR-DATLDQIEEAAKIAHAH 426
G+ ++ L ++Q+ + + + + D T ++ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL-------LNPSILLLDEVTGGLDF 479
+ ++GR+ L+ + ++ +A VL +LLLDE LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 480 EAERAVQEALDLLM-LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLATGDL 537
+ A+ + L L G + ++ + L+ R+A ++ G++ G +E+L +L
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 225
Query: 538 YA 539
Sbjct: 226 AQ 227
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 143 bits (363), Expect = 6e-39
Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 37/251 (14%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ + ++ Y VL SL+ G ++++G SGSGKST + I P G +
Sbjct: 3 LHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 1114 LLDGRDLKLYN-------------LRWLRNHLGLVQQEPIIFST-TIRENIIYAR---HN 1156
+++G+++ L LR LR L +V Q ++S T+ EN++ A
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 1157 ASEAEVKEAA-----RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNA 1211
S+ + +E A ++ P L+ GQ+QR++IAR +
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAMEP 168
Query: 1212 PILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIV 1270
+LL DE +S+++ E V + L KT +++ H RHV +++ L+ G+I
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 1271 EEGTHDSLLAK 1281
EEG + +
Sbjct: 229 EEGDPEQVFGN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 122 bits (307), Expect = 2e-31
Identities = 52/246 (21%), Positives = 108/246 (43%), Gaps = 31/246 (12%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ +++ Y +L G L A ++++G +GSGKS+ + + P+ G +
Sbjct: 3 LHVIDLHKRY---GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 369 LLDGENIKNLK-------------LEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATL- 413
+++G+NI ++ L LR+++ +V Q L +++ +N+ L
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 414 ----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILL 469
D E A K + Y L+ Q+ ++SIARA+ + P +LL
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH-------LSGGQQQRVSIARALAMEPDVLL 172
Query: 470 LDEVTGGLDFEAERAVQEALDLL-MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGT 527
DE T LD E V + L G++ +++ + R+ + ++ + +G++ E G
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232
Query: 528 HDELLA 533
+++
Sbjct: 233 PEQVFG 238
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 142 bits (360), Expect = 1e-38
Identities = 50/237 (21%), Positives = 109/237 (45%), Gaps = 25/237 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++L+N+ + ++ +L + G+ + ++G SG GK+T + +I +P G++
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARH------NASEAEVKEAA 1166
RD+ L ++ +V Q ++ T+ ENI + + + V+ AA
Sbjct: 64 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESE 1226
+ ++ P L+ GQ+QR+A+AR ++ +LL+DE S+++++
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 1227 SSRVVQEALDTLIM-GNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAK 1281
++ + L TTI + H + D I V+N G++++ G+ + +
Sbjct: 171 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 124 bits (313), Expect = 2e-32
Identities = 52/232 (22%), Positives = 108/232 (46%), Gaps = 19/232 (8%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
++ N+ + ++ LT+ + + L+G +G GK++ + ++ +PT G +
Sbjct: 7 VKLENLTKRF---GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYG---RDATLDQIEEAAKIAH 424
++ L + I +V Q A+ +++ +NIA+ + D+I++ + A
Sbjct: 64 YFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
I L Y Q L+ Q+ ++++ARA+++ P +LL+DE LD + A
Sbjct: 122 ELLQIEELLNRYPAQ-------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 485 VQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
++ + L L +TI + D IAVM+ G+L ++G+ E+
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 140 bits (355), Expect = 5e-38
Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 24/241 (9%)
Query: 1054 IELKNVDFCYPSRP-EVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
I+L N+ + + L+N SL V GQ V+G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1113 VLLDGRDLKLYN---LRWLRNHLGLVQQEP-IIFSTTIRENIIYARH------NASEAEV 1162
VL+DG++L + L R +G++ Q ++ S T+ N+ + + V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1163 KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSS 1222
E + S P +L+ GQKQR+AIAR + N +LL DEA+S+
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 1223 IESESSRVVQEALDTLI-MGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLA 1280
++ ++R + E L + T +LI H +++ + D + V++ G ++E+ T + +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 1281 K 1281
Sbjct: 231 H 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 124 bits (312), Expect = 2e-32
Identities = 65/234 (27%), Positives = 109/234 (46%), Gaps = 14/234 (5%)
Query: 309 IEFRNVYFSYLSRP-EIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE 367
I+ N+ + I L+ L VPA + ++G +G+GKS++I + PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 368 VLLDGENIKNLKLEW---LRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIA 423
VL+DG+ + L R QIG++ Q LL S ++ N+A + +E +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 424 HAHTFISSLEK-GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
L G + L+ QK +++IARA+ NP +LL DE T LD
Sbjct: 122 TE-----LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 483 RAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
R++ E L + LG + ++I + +++ D +AV+ G L E T E+ +
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 130 bits (328), Expect = 2e-34
Identities = 43/232 (18%), Positives = 101/232 (43%), Gaps = 11/232 (4%)
Query: 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111
G++ +K++ + +L S ++ G+ ++G +G+GK+T + +I P +G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1112 QVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-TIRENIIYARHNASEAEVKEAARIAN 1170
V + G++ + +R + + +E + E + + + + + +
Sbjct: 58 IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 1171 AHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRV 1230
A G + R + G +++ IAR ++ N + +LDE +S ++ ++R
Sbjct: 117 ATEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 1231 VQEALDTLIMGNKTTILI-AHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK 1281
V++ L T ++ + + D I +++ G IVE GT + L +
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 118 bits (297), Expect = 2e-30
Identities = 54/246 (21%), Positives = 109/246 (44%), Gaps = 17/246 (6%)
Query: 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366
G + +++ + IL G + + L+G NG+GK++ + ++ P+ G
Sbjct: 1 GAVVVKDLRKRI---GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 367 EVLLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNIAYGRDATLDQIEEAAKIAHA 425
V + G+N+ +R I + +E ++ + + + E ++
Sbjct: 58 IVTVFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 426 HTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAV 485
T I+ L + + +V ++ KL IARA+++NP + +LDE T GLD R V
Sbjct: 117 ATEIAGLGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 486 QEALDLLMLGRSTIIIA-RRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA------TGDL 537
++ L TI+++ + + D IA++ G + E GT +EL ++
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEV 232
Query: 538 YAELLK 543
+ E++K
Sbjct: 233 FEEVVK 238
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 130 bits (327), Expect = 3e-34
Identities = 52/243 (21%), Positives = 101/243 (41%), Gaps = 22/243 (9%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+ +N+ + E L S+ VN G ++G +GSGKST+I++I F G+V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1114 LLDGRDL-KLYNLRWLRNHLGLVQQEPIIF-STTIRENIIYARHNASE------------ 1159
+ +D+ + Q P T+ EN++ E
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1160 AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219
+ +E A L H YD G +L+ GQ + + I R ++ N ++++DE
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEP 177
Query: 1220 SSSIESESSRVVQEALDTLIMGNKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEGTHDSL 1278
+ + + + + L T ++I HR + + ++D++ V+ G+I+ EG +
Sbjct: 178 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEE 237
Query: 1279 LAK 1281
+
Sbjct: 238 IKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 108 bits (272), Expect = 8e-27
Identities = 48/238 (20%), Positives = 97/238 (40%), Gaps = 16/238 (6%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ N+ + E L G ++V ++G NGSGKS++I ++ F G V
Sbjct: 5 LRTENIVKYF---GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 369 LLDGENIKNLKL-EWLRSQIGLVTQEP-ALLSLSIRDNIAYGRDATLDQIEEAAKIAHAH 426
+ ++I N + E I Q P L +++ +N+ G + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKI---------KLSIARAVLLNPSILLLDEVTGGL 477
+ + + L+ ++K + I RA++ NP ++++DE G+
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 478 DFEAERAVQEAL-DLLMLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
+ + +L G + +II RL ++ N D++ VM G++ G +E +
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 125 bits (314), Expect = 1e-32
Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 25/237 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
++L+NV + EV+V + +L ++ G+ V VG SG GKST++ +I +G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIF-STTIRENIIYARHNAS------EAEVKEAA 1166
+ + + + +G+V Q ++ ++ EN+ + A V + A
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 1167 RIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI-ES 1225
+ H + P L+ GQ+QR+AI R ++ + LLDE S++ +
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 1226 ESSRVVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAK 1281
++ E +T I + H + D IVVL+ GR+ + G L
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 105 bits (262), Expect = 1e-25
Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 19/232 (8%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
++ +NV ++ E+ + L + + V VG +G GKS+++ ++ T G++
Sbjct: 1 VQLQNVTKAW---GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYG---RDATLDQIEEAAKIAH 424
+ + + + +G+V Q AL LS+ +N+++G A + I +
Sbjct: 58 FIGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 425 AHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERA 484
++ L L+ Q+ +++I R ++ PS+ LLDE LD
Sbjct: 116 EVLQLAHLLDRKPKA-------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 485 VQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
++ + L LGR+ I + AD I V+D GR+ ++G EL
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 123 bits (310), Expect = 5e-32
Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 11/230 (4%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++++ Y + + LKV GQ V ++G +G+GK+T +S I G++
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1114 LLDGRDL--KLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANA 1171
+ +G+D+ K ++ + + I T+ EN++ +N + E +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEWI 122
Query: 1172 HHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV 1231
L G L+ G++Q +AI R ++ +L++DE S + V
Sbjct: 123 FSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1232 QEALDTLIMGNKTTILIAHRAAM-MRHVDNIVVLNGGRIVEEGTHDSLLA 1280
E + + T +L+ A ++ VL G+IV EG LL
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 103 bits (257), Expect = 5e-25
Identities = 50/229 (21%), Positives = 102/229 (44%), Gaps = 11/229 (4%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E ++++ Y I + G L VP + V L+G NG+GK++ + + G++
Sbjct: 7 LEVQSLHVYY---GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 369 LLDGENIKNLK-LEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAH 426
+ +G++I N R I LV + + L++ +N+ G D+ +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123
Query: 427 TFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQ 486
+ L++ + G L+ ++ L+I RA++ P +L++DE + GL V
Sbjct: 124 SLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 487 EALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
E + + G + +++ + A Y V++ G++ G ELL
Sbjct: 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 122 bits (308), Expect = 8e-32
Identities = 51/242 (21%), Positives = 104/242 (42%), Gaps = 27/242 (11%)
Query: 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112
+ L +V + EV + SL+V G+ + ++G SG GK+T + +I +P GQ
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1113 VLLDGRDLKLYN----LRWLRNHLGLVQQEPIIFST-TIRENIIYAR------HNASEAE 1161
+ + + + + + +V Q ++ T+ +NI + +
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASS 1221
V+E A + ++ P +L+ GQ+QR+A+ R +++ + L+DE S
Sbjct: 120 VREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168
Query: 1222 SIESESSR-VVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLL 1279
+++++ + E TTI + H + D I V+N G + + G+ D +
Sbjct: 169 NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228
Query: 1280 AK 1281
K
Sbjct: 229 DK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 100 bits (250), Expect = 4e-24
Identities = 50/234 (21%), Positives = 103/234 (44%), Gaps = 17/234 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+ +V+ + E+ + L V + + L+G +G GK++ + ++ +P+ G++
Sbjct: 4 VRLVDVWKVF---GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 369 LLDGENIKNLK----LEWLRSQIGLVTQEPALLS-LSIRDNIAYGRDATLDQIEEAAKIA 423
+ + + + + + I +V Q AL +++ DNIA+ +E +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 424 HAHTFISSLEK-GYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
E G + R L+ Q+ ++++ RA++ P + L+DE LD +
Sbjct: 121 REV-----AELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 483 RAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
++ L L LG +TI + D IAVM+ G L ++G+ DE+
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 122 bits (306), Expect = 1e-31
Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 23/234 (9%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
IE++++ + + L N SLKV G+ ++G +G+GK+ + LI F+ P +G++
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIF-STTIRENIIYARHN---ASEAEVKEAARIA 1169
LLDG+D+ +L ++ + V Q +F +++N+ + V + AR
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1170 NAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSR 1229
H + P L+ G++QR+A+AR ++ N ILLLDE S+++ +
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 1230 VVQEALDTLIMGNKTTIL-IAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAK 1281
+E L L NK T+L I H R + D I V+ G++++ G + + K
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 95.9 bits (238), Expect = 1e-22
Identities = 54/229 (23%), Positives = 104/229 (45%), Gaps = 17/229 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
IE ++ + + L L V + + ++G G+GK+ + L+ F+ P G +
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHT 427
LLDG+++ +L + I V Q +L ++++ N+ +G + +
Sbjct: 58 LLDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 428 FISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQE 487
I L L+ ++ ++++ARA++ NP ILLLDE LD + +E
Sbjct: 116 KIEHLLDRNPLT-------LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 488 ALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
L +L + + I + R AD IAV+ +G+L ++G +E+
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 121 bits (305), Expect = 2e-31
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 23/226 (10%)
Query: 1072 LSNFSLKVN---GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL 1128
L NF L V+ G ++G +G+GKS + LI P G+V L+G D + L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD--ITPLPPE 68
Query: 1129 RNHLGLVQQEPIIFST-TIRENIIYARHNASEAE----VKEAARIANAHHFISSLPHGYD 1183
R +G V Q+ +F ++ NI Y N E V+E A H + P
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA--- 125
Query: 1184 THVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNK 1243
L+ G++QR+A+AR ++ +LLLDE S+++ ++ V+ E L +
Sbjct: 126 --------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD 177
Query: 1244 TTILIA--HRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVR 1287
IL D + V+ GRIVE+G L + V
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 93.5 bits (232), Expect = 1e-21
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 13/208 (6%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL-S 398
L+G G+GKS + L+ P GEV L+G +I L E R IG V Q+ AL
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPH 84
Query: 399 LSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458
LS+ NIAYG ++++E ++ + G + R L+ ++ ++++A
Sbjct: 85 LSVYRNIAYGLR-NVERVERDRRVREMAEKL-----GIAHLLDRKPARLSGGERQRVALA 138
Query: 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIA 515
RA+++ P +LLLDE +D + + + E L + + + L AD +A
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVA 198
Query: 516 VMDEGRLFEMGTHDELLATGDLY-AELL 542
VM GR+ E G EL + + AE L
Sbjct: 199 VMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 119 bits (300), Expect = 3e-31
Identities = 36/217 (16%), Positives = 89/217 (41%), Gaps = 28/217 (12%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
+E++++ Y VL ++ + G V G +G GK+T++ I + P+ G++
Sbjct: 3 LEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1114 LLDGRDLKLYNLRWLRNHLGLVQQEPIIF-STTIRENIIYARH----NASEAEVKEAARI 1168
+ +G + ++ + + +E I+ ++ + + ++ E+ +A
Sbjct: 59 IYNGVP-----ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1169 ANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESS 1228
L L+ G +R+ +A +L NA I +LD+ +I+ +S
Sbjct: 114 VEVLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 1229 RVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLN 1265
V +++ ++ I+ + + + D L+
Sbjct: 162 HKVLKSILEILKEKGIVIISSREE--LSYCDVNENLH 196
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 108 bits (272), Expect = 2e-27
Identities = 41/217 (18%), Positives = 94/217 (43%), Gaps = 28/217 (12%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
+E R++ Y + P+L +T+ V G NG GK++++ + + P GE+
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 369 LLDGENIKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIA-----YGRDATLDQIEEAAKI 422
+ +G I ++ +I + +E + +S+ D + YG ++I +A
Sbjct: 59 IYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA--- 110
Query: 423 AHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAE 482
LE + + L++ ++ +A +L+N I +LD+ +D +++
Sbjct: 111 ---------LESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 483 RAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519
V +++ ++ + +II+ R L D + +
Sbjct: 162 HKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHK 197
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 118 bits (297), Expect = 3e-30
Identities = 58/240 (24%), Positives = 112/240 (46%), Gaps = 24/240 (10%)
Query: 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113
I +KNV + + +V+ L N ++ + G+ ++G SG+GK+T + +I P G++
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1114 LLDGRDLKLYNLRWLR---NHLGLVQQEPIIFST-TIRENIIYARHNAS------EAEVK 1163
D R + + +G+V Q ++ T ENI + N V+
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI 1223
E A+I + HH ++ P +L+ Q+QR+A+AR ++K+ +LLLDE S++
Sbjct: 123 EVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1224 ESESSR-VVQEALDTLIMGNKTTILIAHRAAMMRHV-DNIVVLNGGRIVEEGTHDSLLAK 1281
++ + T ++++H A + + D + VL G++V+ G + L
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.1 bits (241), Expect = 7e-23
Identities = 48/235 (20%), Positives = 111/235 (47%), Gaps = 18/235 (7%)
Query: 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV 368
I +NV + + ++ L + + + ++G +G+GK++ + ++ P+ GE+
Sbjct: 4 IIVKNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 369 LLDGENIKNLKLEWLRS---QIGLVTQEPALLS-LSIRDNIAYG---RDATLDQIEEAAK 421
D + + + +IG+V Q AL L+ +NIA+ + ++I + +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 422 IAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEA 481
I + + + L+ Q+ ++++ARA++ +PS+LLLDE LD
Sbjct: 123 EVAKILDIHHVLNHFPRE-------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 482 ERAVQEALDLL--MLGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533
+ + + + LG + ++++ + I AD + V+ +G+L ++G ++L
Sbjct: 176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 86.2 bits (212), Expect = 9e-20
Identities = 22/192 (11%), Positives = 48/192 (25%), Gaps = 30/192 (15%)
Query: 1085 VAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFST 1144
+ + G G GK+T++ I A + R + ++ I S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1145 TIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIA 1204
+ + V ++ + A
Sbjct: 63 FFTSKKLVGSY-----------------------------GVNVQYFEELAIPILERAYR 93
Query: 1205 RVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVL 1264
++++DE +E S + + N + + V I L
Sbjct: 94 EAKKDRRKVIIIDEI-GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152
Query: 1265 NGGRIVEEGTHD 1276
G ++E +
Sbjct: 153 PGAVLIELTPEN 164
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 78.5 bits (192), Expect = 4e-17
Identities = 16/190 (8%), Positives = 42/190 (22%), Gaps = 28/190 (14%)
Query: 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSL 399
+ + G G GK++++ + + K I ++ S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 400 SIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459
G V ++ +
Sbjct: 63 FFTSKKLVGS----------------------------YGVNVQYFEELAIPILERAYRE 94
Query: 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519
A ++++DE+ F + + + + + I +
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 520 GRLFEMGTHD 529
L E+ +
Sbjct: 155 AVLIELTPEN 164
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 56.1 bits (133), Expect = 1e-08
Identities = 46/324 (14%), Positives = 119/324 (36%), Gaps = 14/324 (4%)
Query: 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWC 775
F RL ++ I + + + + ++ ++ + +R L
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL----LWMP 59
Query: 776 LIIACMGVVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSM 835
L++ + ++ + +++ + + K+ +RR +F M+ V +FD++ +
Sbjct: 60 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 119
Query: 836 RLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQK 895
D+ V ++ S L +++ A++I I+ W+L+++ + PI+S++
Sbjct: 120 T--YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 177
Query: 896 LWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGM 955
S+ +Q + + E ++ V+ F + + K+ +
Sbjct: 178 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237
Query: 956 AIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFG-LA 1014
A + Q + A +L+ + T V + AL+ P L
Sbjct: 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGT----ITVVFSSMIALMRPLKSLT 293
Query: 1015 PYILKRRKSLIS---VFEIIDRVP 1035
+ ++ + + +F I+D
Sbjct: 294 NVNAQFQRGMAACQTLFAILDSEQ 317
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 51.4 bits (121), Expect = 4e-07
Identities = 41/321 (12%), Positives = 96/321 (29%), Gaps = 5/321 (1%)
Query: 718 RLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLI 777
R + I I L+ +I + + + I
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 778 IACMGVVTVVA---NFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLS 834
+ + +V F++ + K+ +R+ +++ + ++ +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 835 MRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWRLALVALATLPILSLSAIAQ 894
+ + T L D +I+A+ I L+ +L L AL P L+
Sbjct: 124 VINDVEQTKDF--ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 895 KLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHG 954
L +R + + L + V+ I V +F + + + + T++ H
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 955 MAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLA 1014
++F + +++ G + + T L
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 1015 PYILKRRKSLISVFEIIDRVP 1035
+ + S+ VF++ID
Sbjct: 302 TTLTQSFASMDRVFQLIDEDY 322
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 7e-07
Identities = 20/139 (14%), Positives = 34/139 (24%), Gaps = 5/139 (3%)
Query: 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIF 1142
+ V + G G GK+T+I V + R + + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1143 STTIRENIIYARHNASEAEVKEAARIANAHHFI-----SSLPHGYDTHVGMRGVDLTPGQ 1197
S E R V + + S G V +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1198 KQRIAIARVVLKNAPILLL 1216
+ I R L ++L
Sbjct: 122 QLFIQAVRQTLSTPGTIIL 140
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 7e-04
Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 13/163 (7%)
Query: 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALL 397
+ V L G G GK+++I + V + + ++ L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 398 SLSIRDNIAYGRD-------ATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEE 450
S + R+ L E+ A S G V +
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVL-RNADCSSGPGQRVCVIDEIGKMELF 120
Query: 451 QKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM 493
++ + R L P ++L G + ++ +
Sbjct: 121 SQLFIQAVRQTLSTPGTIIL-----GTIPVPKGKPLALVEEIR 158
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.7 bits (91), Expect = 0.002
Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 1196 GQKQRIAIARVV----LKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHR 1251
G+K A+A + + +P +LDE ++++ + + + + + I+I+ +
Sbjct: 336 GEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK 395
Query: 1252 AAMMRHVDNIV 1262
M D +V
Sbjct: 396 NTMFEKSDALV 406
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1303 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.95 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.95 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.94 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.69 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.54 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.49 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.41 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.32 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.13 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.11 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.04 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.85 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.8 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.7 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.99 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.85 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.79 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.73 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.69 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.65 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.41 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.3 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.27 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.19 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.16 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.12 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.06 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.04 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.96 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.93 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.91 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.81 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.75 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.68 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.67 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.64 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.57 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.49 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.47 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.46 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.45 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.45 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.43 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.34 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.34 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.28 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.28 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.17 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.08 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.04 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.01 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.99 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.98 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.95 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.94 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.91 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.86 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.83 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.82 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.82 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.75 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.69 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.68 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.66 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.55 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.52 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.51 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.48 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.48 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.41 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.38 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.27 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 94.26 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.24 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.19 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.15 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.08 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.08 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.06 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.96 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.92 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.83 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.78 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.77 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.77 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.74 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.74 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.71 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.52 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.51 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.51 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.48 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.47 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.45 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.43 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.4 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.4 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.39 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.37 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.34 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.33 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.29 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.26 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.18 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.11 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.11 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.02 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.01 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.98 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.92 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.71 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.7 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.7 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.67 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.67 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.67 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.66 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 92.66 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.66 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.63 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.61 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.6 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.54 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.51 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.5 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.46 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.43 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.28 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.11 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.06 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.06 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.05 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.05 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.02 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.96 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.85 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.85 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.83 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.82 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 91.82 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.81 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.78 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.73 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 91.71 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.71 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 91.62 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.62 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.57 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.49 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.49 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.47 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.47 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.46 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 91.46 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.45 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 91.44 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.35 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 91.33 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.25 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.22 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.21 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.17 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.16 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.1 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.92 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.9 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.9 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.81 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 90.81 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.79 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.78 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 90.78 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.75 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.75 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.74 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.73 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.67 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.65 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.64 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.62 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.6 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.54 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.51 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 90.49 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.46 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.42 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.4 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.38 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.32 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 90.26 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.16 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.15 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.15 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 90.12 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.11 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.1 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 90.04 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 90.04 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.03 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.02 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.95 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.94 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.93 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.89 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.86 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.84 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.83 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.8 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 89.76 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.75 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.7 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.69 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.69 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.65 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.51 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 89.51 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.47 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.41 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.37 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.31 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.3 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.27 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.18 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.17 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.14 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.09 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 89.08 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 89.03 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.02 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.98 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.95 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.93 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.91 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.9 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.88 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.87 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 88.86 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.83 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.8 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.76 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 88.63 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 88.61 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.57 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.51 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 88.48 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.44 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.42 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.42 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.27 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 88.27 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 88.22 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.12 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.06 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 88.02 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.99 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.99 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.98 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.97 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.96 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.95 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 87.93 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.89 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.81 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.81 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.75 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.68 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.64 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 87.64 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.63 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 87.59 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 87.59 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.52 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.45 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.41 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.28 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.23 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.23 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.2 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.11 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.1 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.08 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 87.06 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 87.04 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.04 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.02 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 87.0 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.96 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.93 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.87 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 86.86 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 86.82 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.75 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 86.74 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.73 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 86.72 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.72 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.69 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.66 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 86.64 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.61 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.6 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 86.47 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.45 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 86.39 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 86.36 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.28 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 86.28 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.11 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 85.99 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.99 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 85.97 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 85.95 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.9 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.58 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 85.55 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.5 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 85.42 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 85.39 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.36 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 85.36 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 85.33 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.32 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.24 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 85.24 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.18 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 85.16 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.14 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.94 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.88 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 84.86 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 84.84 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.84 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 84.8 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.79 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.77 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 84.59 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 84.56 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.5 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.47 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.41 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.38 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 84.35 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.24 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.2 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.18 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.15 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 84.13 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.07 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.06 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.95 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 83.93 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.92 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.9 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 83.88 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 83.83 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 83.57 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 83.52 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.3 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 83.28 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 83.28 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 83.27 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 83.27 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 83.07 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 82.79 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 82.76 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.62 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.6 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 82.5 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.44 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.4 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.39 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 82.37 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 82.34 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.15 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 82.12 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 82.11 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.0 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.94 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.94 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.89 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 81.83 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 81.74 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 81.64 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.48 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 81.4 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 81.2 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.09 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.89 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 80.88 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 80.64 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 80.61 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 80.59 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 80.26 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.08 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=521.71 Aligned_cols=242 Identities=50% Similarity=0.826 Sum_probs=233.6
Q ss_pred CCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 76628997558987999985201101588638979999827999868899987056658865899999607999978764
Q 000751 1050 VYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 1129 (1303)
Q Consensus 1050 ~~g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1129 (1303)
..|.|+|+||+|+|+++. .++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||.|+++++.+++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNE-APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSSS-CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEECCCC-CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 788799998899959999-7606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 13688836786672128999971888999999999999952699998199986642378888889589999999999703
Q 000751 1130 NHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1130 ~~i~~V~Q~p~Lf~gTIreNI~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~ 1209 (1303)
++++||||+|++|++||+|||.+|.++.++++++++++.+++++++..+|+|++|.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
Q ss_conf 99999984778999989899999999984419929999833901674059899996989988349578964070669987
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLM 1289 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~aD~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~ 1289 (1303)
+|+|||||||||+||++++..|.+.|..+.. ++|+|+||||++.++.||+|++|++|+|++.|+|+||+++++.|++||
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 9989998376544797799999999998753-888999968999998599999998999999889999986884999999
Q ss_pred HHHH
Q ss_conf 4552
Q 000751 1290 QPHY 1293 (1303)
Q Consensus 1290 ~~q~ 1293 (1303)
+.|.
T Consensus 251 ~~Q~ 254 (255)
T d2hyda1 251 SIQN 254 (255)
T ss_dssp TTTT
T ss_pred HHCC
T ss_conf 9747
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=513.25 Aligned_cols=239 Identities=42% Similarity=0.718 Sum_probs=230.3
Q ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 28997558987999985201101588638979999827999868899987056658865899999607999978764136
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
+|+|+||+|+|++.. .++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|++.++.+++|+++
T Consensus 1 eI~~~nvsf~Y~~~~-~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTTS-CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 929999999908999-6037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88836786672128999971888999999999999952699998199986642378888889589999999999703999
Q 000751 1133 GLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP 1212 (1303)
Q Consensus 1133 ~~V~Q~p~Lf~gTIreNI~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~p~ 1212 (1303)
+||||+|++|++||+|||.++.+..++++++++++.+++.+++..+|+|++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHHHHHHH
Q ss_conf 999847789999898999999999844199299998339016740598999969899883495789640-7066998745
Q 000751 1213 ILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQP 1291 (1303)
Q Consensus 1213 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~aD~Iivl~~G~Ive~Gt~~eLl~~-~g~y~~l~~~ 1291 (1303)
|||||||||+||+.+++.|++.|+++.. ++|+|+||||++.++.||+|+||++|+|+|+|+|+||+++ ++.|++||+.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
T ss_conf 3556477655598999999999999858-998999978899998499999998999999889999982998789999998
Q ss_pred HH
Q ss_conf 52
Q 000751 1292 HY 1293 (1303)
Q Consensus 1292 q~ 1293 (1303)
|.
T Consensus 239 Q~ 240 (241)
T d2pmka1 239 QS 240 (241)
T ss_dssp HC
T ss_pred HC
T ss_conf 13
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=513.20 Aligned_cols=244 Identities=50% Similarity=0.801 Sum_probs=233.5
Q ss_pred CCCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 97662899755898799998520110158863897999982799986889998705665886589999960799997876
Q 000751 1049 NVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL 1128 (1303)
Q Consensus 1049 ~~~g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l 1128 (1303)
...|.|+|+||+|+|+++. .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||.|+++++..++
T Consensus 9 ~~~g~I~~~nvsf~Y~~~~-~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSSSS-CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCCEEEEEEEEEEEECCCC-CCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf 7830799998899929999-763533289985999999999999859999999862168884689878801211106654
Q ss_pred HCCEEEECCCCCCCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 413688836786672128999971888-9999999999999526999981999866423788888895899999999997
Q 000751 1129 RNHLGLVQQEPIIFSTTIRENIIYARH-NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVV 1207 (1303)
Q Consensus 1129 R~~i~~V~Q~p~Lf~gTIreNI~~g~~-~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAl 1207 (1303)
|++++||||+|++|++|+++|+.++.+ ..++++++++++.++++++++.+|+|++|.++++|.+|||||||||||||||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred HHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 20687995025447862024332057220899999999999817999973554410143488898499999999999999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
Q ss_conf 03999999847789999898999999999844199299998339016740598999969899883495789640706699
Q 000751 1208 LKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVR 1287 (1303)
Q Consensus 1208 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~aD~Iivl~~G~Ive~Gt~~eLl~~~g~y~~ 1287 (1303)
+++|+|||||||||+||+++++.|++.|+++.. ++|+|+||||++.++.||+|+||++|+|+|+|+|+||+++++.|++
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~ 246 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ 246 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 549988995164445898899999999987522-7889999887999985999999989999998899999868939999
Q ss_pred HHHHHHH
Q ss_conf 8745520
Q 000751 1288 LMQPHYG 1294 (1303)
Q Consensus 1288 l~~~q~~ 1294 (1303)
||+.|.+
T Consensus 247 l~~~Q~g 253 (253)
T d3b60a1 247 LHKMQFG 253 (253)
T ss_dssp HHHHTCC
T ss_pred HHHHCCC
T ss_conf 9997259
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=505.89 Aligned_cols=243 Identities=37% Similarity=0.699 Sum_probs=230.6
Q ss_pred CCCCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 97662899755898799998520110158863897999982799986889998705665886589999960799997876
Q 000751 1049 NVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL 1128 (1303)
Q Consensus 1049 ~~~g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l 1128 (1303)
...|.|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++...+
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf 65336999998998899999976744389984998999999999849999999861437876899889985311013788
Q ss_pred HCCEEEECCCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41368883678667212899997188-89999999999999526999981999866423788888895899999999997
Q 000751 1129 RNHLGLVQQEPIIFSTTIRENIIYAR-HNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVV 1207 (1303)
Q Consensus 1129 R~~i~~V~Q~p~Lf~gTIreNI~~g~-~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAl 1207 (1303)
|++++||||+|++|++||+||+.++. +..+++++.++++.+++.+++..+|+|++|.++++|.+||||||||+|||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf 87765404565002763465545421013027889999999989999985612111367516766895470489986044
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
Q ss_conf 0399999984778999989899999999984419-929999833901674059899996989988349578964070669
Q 000751 1208 LKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYV 1286 (1303)
Q Consensus 1208 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~aD~Iivl~~G~Ive~Gt~~eLl~~~g~y~ 1286 (1303)
+++|+|+|||||||+||+.++..|++.|+++..+ ++|+|+||||++.++.||+|+||++|+|+|+|+|+||++++|.|+
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~ 246 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHH
T ss_conf 56870787167576568536899999999976506989999959799998599999998999999889999985975889
Q ss_pred HHHHH
Q ss_conf 98745
Q 000751 1287 RLMQP 1291 (1303)
Q Consensus 1287 ~l~~~ 1291 (1303)
+||++
T Consensus 247 ~l~~A 251 (251)
T d1jj7a_ 247 AMVQA 251 (251)
T ss_dssp HHHCC
T ss_pred HHHCC
T ss_conf 99629
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=504.84 Aligned_cols=240 Identities=38% Similarity=0.670 Sum_probs=229.4
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89975589879999852011015886389799998279998688999870566588658999996079999787641368
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+|+|++.+ ++|+||||+|++||++||+||||||||||+++|+|+|+|++|+|.+||+|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~~~--~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSSS--CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCCC--CEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 79998899879998--4142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EECCCCCCCCCCHHHHHHCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 883678667212899997188-8999999999999952699998199986642378888889589999999999703999
Q 000751 1134 LVQQEPIIFSTTIRENIIYAR-HNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAP 1212 (1303)
Q Consensus 1134 ~V~Q~p~Lf~gTIreNI~~g~-~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~p~ 1212 (1303)
||||+|++|++||+||+.++. +..++++++++++.+++.+++..+|+|++|.++++|.+||||||||+|||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHHHH
Q ss_conf 99984778999989899999999984419929999833901674059899996989988349578964070669987455
Q 000751 1213 ILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPH 1292 (1303)
Q Consensus 1213 ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~aD~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~~q 1292 (1303)
|||||||||+||+.+++.|++.|+++.. ++|+|+||||++.++.||+|+||++|+|+++|+|+||+++++.|++|+.+|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
T ss_conf 9996588655698899999887888717-998999978799998499999998999999999999986896999999998
Q ss_pred HHCC
Q ss_conf 2044
Q 000751 1293 YGKG 1296 (1303)
Q Consensus 1293 ~~~~ 1296 (1303)
..-|
T Consensus 239 ~~~G 242 (242)
T d1mv5a_ 239 LTVG 242 (242)
T ss_dssp CCCC
T ss_pred HHCC
T ss_conf 5079
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=477.05 Aligned_cols=241 Identities=47% Similarity=0.735 Sum_probs=231.9
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH
Q ss_conf 87764899979998499999985121138850997899987999928899999940489998589989950699898887
Q 000751 304 SVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL 383 (1303)
Q Consensus 304 ~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 383 (1303)
...|.|+|+||+|+|++. +.++|+|+||++++|++++|+|+||||||||+++|.|+++|++|+|.++|.|+++++..++
T Consensus 12 ~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~l 90 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 90 (255)
T ss_dssp CCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHH
T ss_conf 778879999889995999-9760644389983998999988999809999999971278630001539987530788886
Q ss_pred HCCEEEEECCCCCCCHHHHHHHHCCC-CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 42418890456555273999984199-99999999999981314779731024475235799989948999999987520
Q 000751 384 RSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (1303)
Q Consensus 384 ~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~ 462 (1303)
|++|+||+|+|++|++||+|||.+|. +.+++++.++++.+++++++..+|+|++|.++++|.+|||||||||+||||++
T Consensus 91 r~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 91 RNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 34145651015689987999985158679999999999996979999736242010333888984999999999999985
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEECCCHHHHHHCCHHHHHHH
Q ss_conf 49988998389999998989999999998619973999812874102467899984965841059278952490689999
Q 000751 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542 (1303)
Q Consensus 463 ~~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 542 (1303)
++|+|+|||||||+||++++..+.+.+..+.+++|+|+||||++.+..||+|++|++|+|++.|+|+||++.++.|++++
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~ 250 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY 250 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHH
T ss_conf 59989998376544797799999999998753888999968999998599999998999999889999986884999999
Q ss_pred HHH
Q ss_conf 978
Q 000751 543 KCE 545 (1303)
Q Consensus 543 ~~~ 545 (1303)
+.|
T Consensus 251 ~~Q 253 (255)
T d2hyda1 251 SIQ 253 (255)
T ss_dssp TTT
T ss_pred HHC
T ss_conf 974
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=469.35 Aligned_cols=243 Identities=46% Similarity=0.738 Sum_probs=232.7
Q ss_pred CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 98776489997999849999998512113885099789998799992889999994048999858998995069989888
Q 000751 303 PSVHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW 382 (1303)
Q Consensus 303 ~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~ 382 (1303)
+...|+|+|+||+|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.|+++++..+
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf 7783079999889992999-976353328998599999999999985999999986216888468987880121110665
Q ss_pred HHCCEEEEECCCCCCCHHHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 742418890456555273999984199--999999999999813147797310244752357999899489999999875
Q 000751 383 LRSQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 383 ~~~~i~~v~Q~~~l~~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARa 460 (1303)
+|++|+||+|+|++|++|+++|+.++. ..+++++.++++.+++.++++.+|+|++|.++++|.+|||||||||+||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 42068799502544786202433205722089999999999981799997355441014348889849999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEECCCHHHHHHCCHHHHH
Q ss_conf 20499889983899999989899999999986199739998128741024678999849658410592789524906899
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540 (1303)
Q Consensus 461 l~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 540 (1303)
++++|+|||||||||+||+.++..+.+.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|++|+++++.|++
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~ 246 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ 246 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 95499889951644458988999999999875227889999887999985999999989999998899999868939999
Q ss_pred HHHHHH
Q ss_conf 999787
Q 000751 541 LLKCEE 546 (1303)
Q Consensus 541 ~~~~~~ 546 (1303)
+++.|.
T Consensus 247 l~~~Q~ 252 (253)
T d3b60a1 247 LHKMQF 252 (253)
T ss_dssp HHHHTC
T ss_pred HHHHCC
T ss_conf 999725
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=468.64 Aligned_cols=238 Identities=42% Similarity=0.713 Sum_probs=228.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 48999799984999999851211388509978999879999288999999404899985899899506998988874241
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
+|+|+||+|+|++ .+.++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||+|+.+++..++|++|
T Consensus 1 eI~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CEEEEEEEEEECC-CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf 9299999999089-996037424899849999999999999899999999735788888999999994400246553528
Q ss_pred EEEECCCCCCCHHHHHHHHCCC-CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8890456555273999984199-999999999999813147797310244752357999899489999999875204998
Q 000751 388 GLVTQEPALLSLSIRDNIAYGR-DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (1303)
Q Consensus 388 ~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ 466 (1303)
+||+|+|++|++||+|||.++. ..+++++.++++.+++.+++..+|+|++|.+++.|.+||||||||++||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 89824465578400035223575543888999999975578887632013443278788669889898754434441651
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEECCCHHHHHHC-CHHHHHHHHHH
Q ss_conf 89983899999989899999999986199739998128741024678999849658410592789524-90689999978
Q 000751 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLAT-GDLYAELLKCE 545 (1303)
Q Consensus 467 ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 545 (1303)
|+|||||||+||+.+++.+.+.+.++.+++|+|+||||++.++.||+|++|++|+|++.|+|++++++ ++.|.++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf 35564776555989999999999998589989999788999984999999989999998899999829987899999981
Q ss_pred H
Q ss_conf 7
Q 000751 546 E 546 (1303)
Q Consensus 546 ~ 546 (1303)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred C
T ss_conf 3
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=461.85 Aligned_cols=239 Identities=36% Similarity=0.642 Sum_probs=227.9
Q ss_pred CCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 77648999799984999999851211388509978999879999288999999404899985899899506998988874
Q 000751 305 VHGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLR 384 (1303)
Q Consensus 305 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~ 384 (1303)
..+.|+|+||+|+||++++.++|+|+||++++||+++|+||||||||||+++|.|+|+|++|+|.+||+|+.+++..++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf 53369999989988999999767443899849989999999998499999998614378768998899853110137888
Q ss_pred CCEEEEECCCCCCCHHHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 2418890456555273999984199--99999999999981314779731024475235799989948999999987520
Q 000751 385 SQIGLVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~ 462 (1303)
++|+||+|+|++|++||+||+.+|. ..+.+++.++++.+++.++++.+|+|++|.+++.|.+||||||||++||||++
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf 77654045650027634655454210130278899999999899999856121113675167668954704899860445
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCEEEEEECCEEEECCCHHHHHHCCHHHHH
Q ss_conf 49988998389999998989999999998619--9739998128741024678999849658410592789524906899
Q 000751 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLML--GRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAE 540 (1303)
Q Consensus 463 ~~~~ililDE~ts~lD~~~~~~~~~~l~~~~~--~~t~i~i~h~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 540 (1303)
++|+|+|||||||+||+.++..+.+.+.++.+ ++|+|+||||++.+..||+|++|++|+|++.|+|++|++.++.|++
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~ 247 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf 68707871675765685368999999999765069899999597999985999999989999998899999859758899
Q ss_pred HHH
Q ss_conf 999
Q 000751 541 LLK 543 (1303)
Q Consensus 541 ~~~ 543 (1303)
+++
T Consensus 248 l~~ 250 (251)
T d1jj7a_ 248 MVQ 250 (251)
T ss_dssp HHC
T ss_pred HHC
T ss_conf 962
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=459.86 Aligned_cols=235 Identities=42% Similarity=0.674 Sum_probs=226.2
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89997999849999998512113885099789998799992889999994048999858998995069989888742418
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++||+|+|++ ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.|+.+++..++|++|+
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf 799988998799--984142258998599999999999997999999999960989877988998844246788874367
Q ss_pred EEECCCCCCCHHHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 890456555273999984199--999999999999813147797310244752357999899489999999875204998
Q 000751 389 LVTQEPALLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (1303)
Q Consensus 389 ~v~Q~~~l~~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ 466 (1303)
||+|+|++|++||+||+.++. ..++++++++++.+.+.+++..+|+|++|.++++|.+|||||||||+||||++++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97566545785345430124455542356778999997555420374210152368789879999999999999852998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEECCCHHHHHHCCHHHHHHHHHH
Q ss_conf 8998389999998989999999998619973999812874102467899984965841059278952490689999978
Q 000751 467 ILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELLKCE 545 (1303)
Q Consensus 467 ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 545 (1303)
|+|||||||+||+.++..+.+.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||++.++.|++++..|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
T ss_conf 9996588655698899999887888717998999978799998499999998999999999999986896999999998
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=421.13 Aligned_cols=221 Identities=27% Similarity=0.392 Sum_probs=202.0
Q ss_pred CCCEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 66289975589879999852011015886389799998279998688999870566588658999996079999787641
Q 000751 1051 YGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN 1130 (1303)
Q Consensus 1051 ~g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1130 (1303)
...|.|+|++|.+ .|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCCEEEEECCCCC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf 8967999769899-----7677375999859999999989998299999999579747882899999-------------
Q ss_pred CEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 36888367866721289999718889999999999999526999981999866423788888895899999999997039
Q 000751 1131 HLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN 1210 (1303)
Q Consensus 1131 ~i~~V~Q~p~Lf~gTIreNI~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~ 1210 (1303)
+++||||+|++|++||+|||.++.. .++..++.+++.+.+.+++..+|+++++.++++|.+||||||||++|||||+++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCCCEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9999816430267603214203334-560579999999776999984612332355554237799999999999999869
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHHHH
Q ss_conf 99999847789999898999999999844199299998339016740598999969899883495789640706699874
Q 000751 1211 APILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 1290 (1303)
Q Consensus 1211 p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~aD~Iivl~~G~Ive~Gt~~eLl~~~g~y~~l~~ 1290 (1303)
|+|||||||||+||+.++..+++.+.....+++|+|+||||++.++.||+|++|++|+|+++|+|+||++.++.|++.+.
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~~ 256 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLM 256 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHHC
T ss_conf 63513338554489899999999999886289999999252899985999999989999998789999605948999872
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=394.36 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=200.6
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 64899979998499999985121138850997899987999928899999940489998589989950699898887424
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (1303)
Q Consensus 307 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 386 (1303)
..|.|+|++|. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCEEEEECCCC-----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 96799976989-----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 18890456555273999984199999999999999813147797310244752357999899489999999875204998
Q 000751 387 IGLVTQEPALLSLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPS 466 (1303)
Q Consensus 387 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ 466 (1303)
++|++|++++|++||+||+.++...++.++.++++.+.+..++..+|+++++.+++.|.+||||||||++||||++++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCCCCCCCCEEEEEECCEEEECCCHHHHHHCCHHHHHHH
Q ss_conf 8998389999998989999999-998619973999812874102467899984965841059278952490689999
Q 000751 467 ILLLDEVTGGLDFEAERAVQEA-LDLLMLGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTHDELLATGDLYAELL 542 (1303)
Q Consensus 467 ililDE~ts~lD~~~~~~~~~~-l~~~~~~~t~i~i~h~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 542 (1303)
|||||||||+||+.++..+.+. +.....++|+|+|||+++.++.||+|++|++|++++.|+|+||+..++.|....
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf 51333855448989999999999988628999999925289998599999998999999878999960594899987
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=376.40 Aligned_cols=218 Identities=23% Similarity=0.448 Sum_probs=187.4
Q ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 28997558987999985201101588638979999827999868899987056658865899999607999978764136
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||+|++..+.. |++|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 4999879999999---9998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEECCCCCCCC-CCHHHHHHCCCC--CCCHHHH----HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88836786672-128999971888--9999999----9999995269999819998664237888888958999999999
Q 000751 1133 GLVQQEPIIFS-TTIRENIIYARH--NASEAEV----KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIAR 1205 (1303)
Q Consensus 1133 ~~V~Q~p~Lf~-gTIreNI~~g~~--~~~~~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLAR 1205 (1303)
+||||+|.+|+ .|++||+.++.. ..+.+++ .++++.+++.++ .......||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHH
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHH
T ss_conf 9980033534222099999999987399999999999999987598556-----------60995469999988999976
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHH-HCCEEEEEECCEEEEECCHHHHHHC-C
Q ss_conf 970399999984778999989899999999984419-929999833901674-0598999969899883495789640-7
Q 000751 1206 VVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMR-HVDNIVVLNGGRIVEEGTHDSLLAK-N 1282 (1303)
Q Consensus 1206 All~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~-~aD~Iivl~~G~Ive~Gt~~eLl~~-~ 1282 (1303)
||+.+|+||+||||||+||+.+...+++.++++..+ ++|+|+|||++..+. .||+|++|++|+|++.|++++++++ .
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 229 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 64049982430688666898999899999999987319807999489999998699999998999999859999986899
Q ss_pred CHHH
Q ss_conf 0669
Q 000751 1283 GLYV 1286 (1303)
Q Consensus 1283 g~y~ 1286 (1303)
..|.
T Consensus 230 ~~~~ 233 (239)
T d1v43a3 230 SVFV 233 (239)
T ss_dssp BHHH
T ss_pred CHHH
T ss_conf 9899
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=379.88 Aligned_cols=221 Identities=26% Similarity=0.453 Sum_probs=189.4
Q ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 289975589879999852011015886389799998279998688999870566588658999996079999---78764
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN---LRWLR 1129 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~---~~~lR 1129 (1303)
.|+++||+++|++. +..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||+|+...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 89997579998899-98998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEECCCCCCCCC-CHHHHHHCCCC--CCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 136888367866721-28999971888--9999----9999999995269999819998664237888888958999999
Q 000751 1130 NHLGLVQQEPIIFST-TIRENIIYARH--NASE----AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1130 ~~i~~V~Q~p~Lf~g-TIreNI~~g~~--~~~~----~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRia 1202 (1303)
++++||+|+|.||+. |++|||.++.. ..+. +.+.++++.+++.++.++.| ..||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHHHHH
T ss_conf 451477304334666657777665567613799999999999986659176664895-----------459999985899
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHH-HHCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999970399999984778999989899999999984419-92999983390167-4059899996989988349578964
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1203 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti-~~aD~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
|||||..+|+|||+|||||+||+.+...+++.++++..+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred C-CCHH
Q ss_conf 0-7066
Q 000751 1281 K-NGLY 1285 (1303)
Q Consensus 1281 ~-~g~y 1285 (1303)
+ ...|
T Consensus 231 ~P~~~~ 236 (242)
T d1oxxk2 231 NPVSIQ 236 (242)
T ss_dssp SCSSHH
T ss_pred CCCCHH
T ss_conf 899979
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=378.50 Aligned_cols=217 Identities=25% Similarity=0.435 Sum_probs=189.8
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89975589879999852011015886389799998279998688999870566588658999996079999787641368
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++||+++|++ ..+|+|+||+|++||++||+||||||||||++++.|+++|++|+|++||.++.+.+. .|++|+
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEE
T ss_conf 999999999899---999811177886998999998999829999999965878888889999997788864--443222
Q ss_pred EECCCCCCCCC-CHHHHHHCCCCC--CC----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88367866721-289999718889--99----999999999952699998199986642378888889589999999999
Q 000751 1134 LVQQEPIIFST-TIRENIIYARHN--AS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARV 1206 (1303)
Q Consensus 1134 ~V~Q~p~Lf~g-TIreNI~~g~~~--~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARA 1206 (1303)
||||+|.+|+. |++||+.++... .+ ++.+.++++..++.++.++.|. .||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----------~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----------HCCHHHHHHHHHHHH
T ss_conf 343342026433378897899987599889999999999975788656648965-----------699999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC-CC
Q ss_conf 7039999998477899998989999999998441-99299998339016740-598999969899883495789640-70
Q 000751 1207 VLKNAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK-NG 1283 (1303)
Q Consensus 1207 ll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~-aD~Iivl~~G~Ive~Gt~~eLl~~-~g 1283 (1303)
|+.+|++|+||||||+||+.+...+++.+.++.. .++|+|+|||++..+.. ||+|++|++|+|++.|+++|++++ ..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf 70399889975888788988998999999999874298799994899999996999999979999998089999738999
Q ss_pred HHH
Q ss_conf 669
Q 000751 1284 LYV 1286 (1303)
Q Consensus 1284 ~y~ 1286 (1303)
.|.
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 799
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=378.29 Aligned_cols=211 Identities=28% Similarity=0.503 Sum_probs=186.7
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89975589879999852011015886389799998279998688999870566588658999996079999787641368
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
|+++|++++|++ .+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+++++.. |++++
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 899989999499----788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EECCCCCCCCC-CHHHHHHCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 88367866721-28999971888---999999999999952699998199986642378888889589999999999703
Q 000751 1134 LVQQEPIIFST-TIRENIIYARH---NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1134 ~V~Q~p~Lf~g-TIreNI~~g~~---~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~ 1209 (1303)
||||++.+|+. |++||+.++.. ...++++.++++..++.++.++. ...||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCC-----------HHHCCHHHHCCHHHHHHHHC
T ss_conf 1512111174665778888877640553899999999982565557589-----------55479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 9999998477899998989999999998441-99299998339016740-598999969899883495789640
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIM-GNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~-~~~TvI~IaHrl~ti~~-aD~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
+|++||||||||+||+.+...+++.++.+.. .+.|+|+|||+++.+.. ||+|++|.+|+|++.|+++|++++
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 67714434787679989999999999999864796899974999999996999999979999998699999868
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=378.46 Aligned_cols=217 Identities=30% Similarity=0.479 Sum_probs=188.0
Q ss_pred EEEEEEEEECCCCCC-CCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899755898799998-52011015886389799998279998688999870566588658999996079999787---64
Q 000751 1054 IELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW---LR 1129 (1303)
Q Consensus 1054 I~~~nVsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1129 (1303)
|+++|++++|+++.. ..+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.++|.|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEECCCCCCCCC-CHHHHHHCCCC--CCC----HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 136888367866721-28999971888--999----99999999995269999819998664237888888958999999
Q 000751 1130 NHLGLVQQEPIIFST-TIRENIIYARH--NAS----EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIA 1202 (1303)
Q Consensus 1130 ~~i~~V~Q~p~Lf~g-TIreNI~~g~~--~~~----~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRia 1202 (1303)
++++||||+|.+|+. |++||+.++.. ..+ ++.+.++++.+++.++.++. ...||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~-----------~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSC-----------BSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCC-----------HHHCCHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976990355489-----------4349999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999970399999984778999989899999999984419-9299998339016740-59899996989988349578964
Q 000751 1203 IARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLA 1280 (1303)
Q Consensus 1203 LARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-aD~Iivl~~G~Ive~Gt~~eLl~ 1280 (1303)
|||||..+|++||+||||++||+.+...|++.|+++..+ +.|+|+|||++..+.. ||+|++|++|+|+|.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred C
Q ss_conf 0
Q 000751 1281 K 1281 (1303)
Q Consensus 1281 ~ 1281 (1303)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=378.55 Aligned_cols=220 Identities=23% Similarity=0.399 Sum_probs=188.2
Q ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 289975589879999852011015886389799998279998688999870566588658999996079999787----6
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRW----L 1128 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~----l 1128 (1303)
.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 1899869999899---9998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCEEEECCCCCCCCC-CHHHHHHCCCC--CCCHH----HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 4136888367866721-28999971888--99999----99999999526999981999866423788888895899999
Q 000751 1129 RNHLGLVQQEPIIFST-TIRENIIYARH--NASEA----EVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1129 R~~i~~V~Q~p~Lf~g-TIreNI~~g~~--~~~~~----ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRi 1201 (1303)
|++++||+|+|.||+. |++||+.++.. ..+.+ .+.++++.+++.++..+. ...||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~-----------p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCC-----------HHHCCHHHHHHH
T ss_conf 255120022122231011667633068772999899999999999875996676299-----------334999999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHH
Q ss_conf 9999970399999984778999989899999999984419-9299998339016740-5989999698998834957896
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1202 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-aD~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
+|||||+.+|+||+|||||++||+.+...+++.++++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HC-CCHHH
Q ss_conf 40-70669
Q 000751 1280 AK-NGLYV 1286 (1303)
Q Consensus 1280 ~~-~g~y~ 1286 (1303)
++ ...|.
T Consensus 229 ~~P~~~~~ 236 (240)
T d1g2912 229 DKPANTFV 236 (240)
T ss_dssp HSCSBHHH
T ss_pred HCCCCHHH
T ss_conf 28999898
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=372.96 Aligned_cols=215 Identities=29% Similarity=0.437 Sum_probs=177.0
Q ss_pred EEEEEEEEECCCCCC-CCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899755898799998-520110158863897999982799986889998705665886589999960799997876----
Q 000751 1054 IELKNVDFCYPSRPE-VLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWL---- 1128 (1303)
Q Consensus 1054 I~~~nVsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l---- 1128 (1303)
|+++||+++|+.... ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+..++...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEECCCCCCCCC-CHHHHHHCCC-----CCCCHHHH-HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 4136888367866721-2899997188-----89999999-999999526999981999866423788888895899999
Q 000751 1129 RNHLGLVQQEPIIFST-TIRENIIYAR-----HNASEAEV-KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRI 1201 (1303)
Q Consensus 1129 R~~i~~V~Q~p~Lf~g-TIreNI~~g~-----~~~~~~ei-~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRi 1201 (1303)
|++|+||+|+|.+|+. |++||+.++. ...+.++. .++.+...+ -.+++. .....-.+||||||||+
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~L~~~---~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM----AELEER---FANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHH----TTCCGG---GTTCCGGGSCHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH----HCHHHH---HHCCCHHHCCHHHHHHH
T ss_conf 55577880412417686688877578887224789999999999998876----242345---53488023899999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHCCEEEEEECCEEEEECCH
Q ss_conf 9999970399999984778999989899999999984419-9299998339016740598999969899883495
Q 000751 1202 AIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTH 1275 (1303)
Q Consensus 1202 aLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~aD~Iivl~~G~Ive~Gt~ 1275 (1303)
+|||||..+|+||+||||||+||+.+...|++.+.++..+ ++|+|+|||+++.++.||+|++|++|+|++.|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=369.21 Aligned_cols=224 Identities=27% Similarity=0.472 Sum_probs=189.6
Q ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC--------
Q ss_conf 289975589879999852011015886389799998279998688999870566588658999996079999--------
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYN-------- 1124 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~-------- 1124 (1303)
.|+++|++++|++. .+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.++...+
T Consensus 2 ~Lev~nl~k~yg~~---~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETTE---EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEECCE---EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 69999789998999---988150668869979999989998299999999747667899779999993367752000023
Q ss_pred -----HHHHHCCEEEECCCCCCCC-CCHHHHHHCCC---CCCCH----HHHHHHHHHHCHHHHHH-HCCCCCCCCCCCCC
Q ss_conf -----7876413688836786672-12899997188---89999----99999999952699998-19998664237888
Q 000751 1125 -----LRWLRNHLGLVQQEPIIFS-TTIRENIIYAR---HNASE----AEVKEAARIANAHHFIS-SLPHGYDTHVGMRG 1190 (1303)
Q Consensus 1125 -----~~~lR~~i~~V~Q~p~Lf~-gTIreNI~~g~---~~~~~----~ei~~al~~a~l~~~I~-~lp~Gldt~vge~G 1190 (1303)
...+|++++||+|+|.+|+ .|++||+.++. ...+. +.+.++++.+++.+... +.|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430682-----------
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH-CCEEEEEECCEE
Q ss_conf 8889589999999999703999999847789999898999999999844199299998339016740-598999969899
Q 000751 1191 VDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRI 1269 (1303)
Q Consensus 1191 ~~LSGGQkQRiaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-aD~Iivl~~G~I 1269 (1303)
.+|||||+||++|||||..+|++|+|||||++||+.+...|++.|+++..+++|+|+|||++..+.. ||||+||.+|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 20567788898999998439987885245556887888899876554103688338994899999986999999979999
Q ss_pred EEECCHHHHHHC-CCHHH-HHHH
Q ss_conf 883495789640-70669-9874
Q 000751 1270 VEEGTHDSLLAK-NGLYV-RLMQ 1290 (1303)
Q Consensus 1270 ve~Gt~~eLl~~-~g~y~-~l~~ 1290 (1303)
++.|+++|++.+ ...|. +++.
T Consensus 228 v~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 228 EEEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EEEECHHHHHHSCCSHHHHHHHH
T ss_pred EEECCHHHHHHCCCCHHHHHHHH
T ss_conf 99849999983899999999881
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.1e-44 Score=356.84 Aligned_cols=221 Identities=24% Similarity=0.386 Sum_probs=183.9
Q ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 289975589879999852011015886389799998279998688999870566588658999996079999787641-3
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRN-H 1131 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~-~ 1131 (1303)
-|+++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 7999618999899---8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCCCC-CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 6888367866721-289999718889-99999999999952699998199986642378888889589999999999703
Q 000751 1132 LGLVQQEPIIFST-TIRENIIYARHN-ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK 1209 (1303)
Q Consensus 1132 i~~V~Q~p~Lf~g-TIreNI~~g~~~-~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~ 1209 (1303)
++|+||++.+|+. |++||+.++... ...++..+.++.+- +... +++........+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~----~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFP----RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCH----HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHH----CHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--8741----76888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH-HHCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 9999998477899998989999999998441992999983390167-405989999698998834957896407
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~aD~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
+|++|+|||||++||+.+...+++.++++..+++|+|+++|+++.+ +.||+|++|++|+|++.|+++|++++.
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 99874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.9e-44 Score=355.18 Aligned_cols=219 Identities=22% Similarity=0.353 Sum_probs=183.7
Q ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-
Q ss_conf 2899755898799998520110158863897999982799986889998705665886589999960799997876413-
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH- 1131 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~- 1131 (1303)
-++++|++.+|++. .+|+||||++++||.+||+||||||||||+++|.|+++|++|+|.++|.|++..++...++.
T Consensus 4 iL~v~nlsk~yg~~---~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF---KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETTE---EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEECCE---EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 69997789997996---887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEECCCCCCCC-CCHHHHHHCCCCC---------------CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 688836786672-1289999718889---------------999999999999526999981999866423788888895
Q 000751 1132 LGLVQQEPIIFS-TTIRENIIYARHN---------------ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTP 1195 (1303)
Q Consensus 1132 i~~V~Q~p~Lf~-gTIreNI~~g~~~---------------~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSG 1195 (1303)
|+|+||+|.+|. -|++||+.++... ..+++..+.+ .+.++.+ |++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA-----FKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHH-----HHHHHHC--CCCHHCCCCHHHCCC
T ss_conf 872577642478874232143013330345045665421353289999999-----9998761--963020595356991
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH-HHCCEEEEEECCEEEEECC
Q ss_conf 899999999997039999998477899998989999999998441992999983390167-4059899996989988349
Q 000751 1196 GQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1196 GQkQRiaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~aD~Iivl~~G~Ive~Gt 1274 (1303)
|||||++||||+..+|++|||||||++||+.+...+++.++++..+++|+|+|+|+++.+ +.||+|+||++|+|++.|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 88889999999975927232439765699999999999999999789989999476999998699999996998999966
Q ss_pred HHHHHHC
Q ss_conf 5789640
Q 000751 1275 HDSLLAK 1281 (1303)
Q Consensus 1275 ~~eLl~~ 1281 (1303)
++|+.++
T Consensus 234 ~~e~~~~ 240 (254)
T d1g6ha_ 234 GEEEIKN 240 (254)
T ss_dssp SHHHHHH
T ss_pred HHHHHHC
T ss_conf 8998654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.9e-43 Score=350.52 Aligned_cols=219 Identities=21% Similarity=0.378 Sum_probs=187.5
Q ss_pred CCEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 62899755898799998520110158863897999982799986889998705665886589999960799997876413
Q 000751 1052 GSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNH 1131 (1303)
Q Consensus 1052 g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1131 (1303)
|.|+++|++.+|.++ .+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+.+ ....+|+.
T Consensus 1 gaI~v~nl~k~yg~~---~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETTE---EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEECCE---EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 978999589999999---99806256884897999999999999999999966988788879998672446-83988721
Q ss_pred EEEECCCCCCCCC-CHHHHHHCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6888367866721-28999971888--99999999999995269999819998664237888888958999999999970
Q 000751 1132 LGLVQQEPIIFST-TIRENIIYARH--NASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1132 i~~V~Q~p~Lf~g-TIreNI~~g~~--~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll 1208 (1303)
++||||++.+|.. |++||+.+... ..+.+++.+..+..- +.. +++......-..||||||||++||||++
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l--~~~-----~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT--EIA-----GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHH-----CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHC-----CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 867500154687866778889899861799899999999999--867-----9788885045337998989999999986
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 3999999847789999898999999999844199299998339016740-598999969899883495789640
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK 1281 (1303)
Q Consensus 1209 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~-aD~Iivl~~G~Ive~Gt~~eLl~~ 1281 (1303)
.+|+|++|||||++||+.+.+.+++.++++...++|+|++||+++.+.. ||+|++|++|+|++.|+++++.++
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 59998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.3e-43 Score=349.99 Aligned_cols=210 Identities=26% Similarity=0.452 Sum_probs=187.0
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89997999849999998512113885099789998799992889999994048999858998995069989888742418
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|+ + .+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|+|+.+.+.. ++.||
T Consensus 2 i~v~nlsk~y~---~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWK---N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECS---S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEEC---C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf 89998999949---9-788433789879989999989998299999999647688878899956734652165--74056
Q ss_pred EEECCCCCCC-HHHHHHHHCCC----CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8904565552-73999984199----999999999999813147797310244752357999899489999999875204
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR----DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~ 463 (1303)
||+|++.+|. .|++||+.++. ....+++.++++..++.++..+ ....||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTS
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHC-----------CHHHCCHHHHCCHHHHHHHHC
T ss_conf 151211117466577888887764055389999999998256555758-----------955479998401403043443
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCC-CCEEEEEECCEEEECCCHHHHHHCC
Q ss_conf 998899838999999898999999999861--99739998128741024-6789998496584105927895249
Q 000751 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 464 ~~~ililDE~ts~lD~~~~~~~~~~l~~~~--~~~t~i~i~h~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
+|++|+|||||++||+.+...+.+.+.++. .+.|+|+|||+++.+.. ||+|++|.+|++++.|++++++.++
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P 219 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 677144347876799899999999999998647968999749999999969999999799999986999998689
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.7e-43 Score=348.33 Aligned_cols=212 Identities=23% Similarity=0.401 Sum_probs=185.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 48999799984999999851211388509978999879999288999999404899985899899506998988874241
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|+|+...+.. ++.|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf 499987999999---99998130678879989999999998299999999758999878799916413547700--0158
Q ss_pred EEEECCCCCCC-HHHHHHHHCCC---CCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 88904565552-73999984199---999999----99999981314779731024475235799989948999999987
Q 000751 388 GLVTQEPALLS-LSIRDNIAYGR---DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIAR 459 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialAR 459 (1303)
|||+|++.+|. .|++||+.++. ..+.++ +.++++.+++.+ ........||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-----------LLNRYPAQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-----------GTTSCTTTCCSSCHHHHHHHH
T ss_pred EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH-----------HHCCCHHHCCHHHHHHHHHHH
T ss_conf 998003353422209999999998739999999999999998759855-----------660995469999988999976
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEECCCHHHHHHCC
Q ss_conf 5204998899838999999898999999999861--9973999812874102-46789998496584105927895249
Q 000751 460 AVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 460 al~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~--~~~t~i~i~h~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
||..+|++++|||||++||+.+...+.+.+.++. .|.|+|+|||++..+. .||+|++|++|+|++.|+++++..++
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 6404998243068866689899989999999998731980799948999999869999999899999985999998689
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-43 Score=352.13 Aligned_cols=211 Identities=25% Similarity=0.412 Sum_probs=185.1
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89997999849999998512113885099789998799992889999994048999858998995069989888742418
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
|+++|++++|. +..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++.+.+.. ++.||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf 99999999989---99998111778869989999989998299999999658788888899999977888644--43222
Q ss_pred EEECCCCCCC-HHHHHHHHCCCC---CC----HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8904565552-739999841999---99----999999999813147797310244752357999899489999999875
Q 000751 389 LVTQEPALLS-LSIRDNIAYGRD---AT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARA 460 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARa 460 (1303)
||+|+|.+|. .|++||+.++.. .+ ++++.++++..++.++..+. ...||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHHH
T ss_conf 3433420264333788978999875998899999999999757886566489-----------65699999999999999
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCC-CCEEEEEECCEEEECCCHHHHHHCC
Q ss_conf 204998899838999999898999999999861--99739998128741024-6789998496584105927895249
Q 000751 461 VLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 461 l~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~--~~~t~i~i~h~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
|+.+|++++|||||++||+.+...+.+.+.++. .|+|+|++||++..+.. ||+|++|++|++++.|++++++...
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCC
T ss_conf 703998899758887889889989999999998742987999948999999969999999799999980899997389
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.2e-43 Score=352.22 Aligned_cols=216 Identities=24% Similarity=0.396 Sum_probs=187.5
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHH
Q ss_conf 489997999849999998512113885099789998799992889999994048999858998995069989---88874
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLK---LEWLR 384 (1303)
Q Consensus 308 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~~ 384 (1303)
.|+++|++++|+. ++..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEEEEEEECC-CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf 8999757999889-998998040789879989999989998099999999758688874599999995137311153120
Q ss_pred CCEEEEECCCCCCC-HHHHHHHHCCC---CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 24188904565552-73999984199---9999----9999999981314779731024475235799989948999999
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqria 456 (1303)
++||||+|+|.+|. -|++|||.++. ..+. +++.++++.+++.++..+.| ..||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHHHHH
T ss_conf 451477304334666657777665567613799999999999986659176664895-----------459999985899
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCC-CCCEEEEEECCEEEECCCHHHHHH
Q ss_conf 9875204998899838999999898999999999861--9973999812874102-467899984965841059278952
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~--~~~t~i~i~h~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
|||||..+|+++++||||++||+.+...+.+.++++. .|.|+|++||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 87577604661454478667998998899899999986359879999799999999699999998999999869999986
Q ss_pred CC
Q ss_conf 49
Q 000751 534 TG 535 (1303)
Q Consensus 534 ~~ 535 (1303)
.+
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
T ss_conf 89
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.4e-43 Score=351.62 Aligned_cols=214 Identities=22% Similarity=0.378 Sum_probs=185.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----H
Q ss_conf 489997999849999998512113885099789998799992889999994048999858998995069989888----7
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW----L 383 (1303)
Q Consensus 308 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~----~ 383 (1303)
.|+++|++++|. +..+|+|+||++++||+++|+||||||||||+++|.|++.|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf 189986999989---99998560668869989999999998099999999648788989899999980356644424532
Q ss_pred HCCEEEEECCCCCCC-HHHHHHHHCCC---CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 424188904565552-73999984199---9999----999999998131477973102447523579998994899999
Q 000751 384 RSQIGLVTQEPALLS-LSIRDNIAYGR---DATL----DQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKL 455 (1303)
Q Consensus 384 ~~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqri 455 (1303)
|+.|+||+|+|.+|. .||.||+.++. ..+. +++.+.++.+++.++..+. ...||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~-----------p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHHHH
T ss_pred CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCC-----------HHHCCHHHHHHH
T ss_conf 255120022122231011667633068772999899999999999875996676299-----------334999999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCCCCCC-CCEEEEEECCEEEECCCHHHHH
Q ss_conf 99875204998899838999999898999999999861-9-9739998128741024-6789998496584105927895
Q 000751 456 SIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-L-GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELL 532 (1303)
Q Consensus 456 alARal~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~-~-~~t~i~i~h~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 532 (1303)
+|||||..+|++++|||||++||+.+...+.+.+.++. + |.|+|+|||+++.+.. ||+|++|++|+|++.|++++++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999826998898258876569899989999999998636988999959999999969999999899999985999998
Q ss_pred HCC
Q ss_conf 249
Q 000751 533 ATG 535 (1303)
Q Consensus 533 ~~~ 535 (1303)
.++
T Consensus 229 ~~P 231 (240)
T d1g2912 229 DKP 231 (240)
T ss_dssp HSC
T ss_pred HCC
T ss_conf 289
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.2e-43 Score=347.94 Aligned_cols=217 Identities=25% Similarity=0.421 Sum_probs=178.4
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89975589879999852011015886389799998279998688999870566588658999996079999787641368
Q 000751 1054 IELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLG 1133 (1303)
Q Consensus 1054 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1133 (1303)
+++ ++.-+|.+- .+ |+||++. |+.++|+||||||||||+++|.|+++|++|+|.++|.|+..++.. |++|+
T Consensus 3 l~v-~~~k~~g~~----~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGNF----RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETTE----EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECCE----EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-999998999----99-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EECCCCCCCC-CCHHHHHHCCCCCCCHHHH----HHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8836786672-1289999718889999999----9999995269999819998664237888888958999999999970
Q 000751 1134 LVQQEPIIFS-TTIRENIIYARHNASEAEV----KEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL 1208 (1303)
Q Consensus 1134 ~V~Q~p~Lf~-gTIreNI~~g~~~~~~~ei----~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll 1208 (1303)
||||+|.+|+ -||+||+.++....+..+. .++++.+++ ..........||||||||++||||++
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl-----------~~~~~~~~~~LSGG~kQRvaiAral~ 142 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI-----------AHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTC-----------TTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC-----------HHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 2523144352201557666532336778899999999986383-----------75665794448999989999987775
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHH-CCEEEEEECCEEEEECCHHHHHHC-CCHH
Q ss_conf 399999984778999989899999999984419-9299998339016740-598999969899883495789640-7066
Q 000751 1209 KNAPILLLDEASSSIESESSRVVQEALDTLIMG-NKTTILIAHRAAMMRH-VDNIVVLNGGRIVEEGTHDSLLAK-NGLY 1285 (1303)
Q Consensus 1209 ~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~-~~TvI~IaHrl~ti~~-aD~Iivl~~G~Ive~Gt~~eLl~~-~g~y 1285 (1303)
.+|++|+||||||+||+.+...+++.++++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++|+++. +...
T Consensus 143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v 222 (240)
T d2onka1 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEV 222 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSH
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHH
T ss_conf 16770675286555887999999999999987439769998189999999699999998999999906999832998899
Q ss_pred HHHHH
Q ss_conf 99874
Q 000751 1286 VRLMQ 1290 (1303)
Q Consensus 1286 ~~l~~ 1290 (1303)
++++.
T Consensus 223 ~~fl~ 227 (240)
T d2onka1 223 AEFLS 227 (240)
T ss_dssp HHHGG
T ss_pred HHHHC
T ss_conf 99857
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-43 Score=350.22 Aligned_cols=215 Identities=29% Similarity=0.431 Sum_probs=185.5
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899979998499999-98512113885099789998799992889999994048999858998995069989888---74
Q 000751 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEW---LR 384 (1303)
Q Consensus 309 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~~ 384 (1303)
|+++|++++|+.... ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|+|+...+... +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEEECCCCCCC-HHHHHHHHCCC---CCC----HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 24188904565552-73999984199---999----99999999981314779731024475235799989948999999
Q 000751 385 SQIGLVTQEPALLS-LSIRDNIAYGR---DAT----LDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLS 456 (1303)
Q Consensus 385 ~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqria 456 (1303)
++||||+|++.+|. .|++||+.++. ..+ .+++.+.++.+++.+... .....||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-----------~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-----------SCBSCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH-----------CCHHHCCHHHHHHHH
T ss_conf 166430225222799649999999999849998999999999999769903554-----------894349999998999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCCCCCC-CCEEEEEECCEEEECCCHHHHHH
Q ss_conf 9875204998899838999999898999999999861-9-9739998128741024-67899984965841059278952
Q 000751 457 IARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-L-GRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLA 533 (1303)
Q Consensus 457 lARal~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~-~-~~t~i~i~h~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 533 (1303)
|||||..+|++|++||||++||+.+...+.+.+.++. + |.|+|+|||++..+.. ||+|++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 86401058986874465565898885679999999986469789998389999998699999997999999879999972
Q ss_pred C
Q ss_conf 4
Q 000751 534 T 534 (1303)
Q Consensus 534 ~ 534 (1303)
.
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
T ss_conf 8
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-43 Score=348.13 Aligned_cols=210 Identities=26% Similarity=0.392 Sum_probs=175.3
Q ss_pred EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899979998499999-985121138850997899987999928899999940489998589989950699898887----
Q 000751 309 IEFRNVYFSYLSRPE-IPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWL---- 383 (1303)
Q Consensus 309 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~---- 383 (1303)
|+++|++++|+.... ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++...+...+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEEECCCCCCC-HHHHHHHHCCC------CCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 424188904565552-73999984199------999999----9999998131477973102447523579998994899
Q 000751 384 RSQIGLVTQEPALLS-LSIRDNIAYGR------DATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQK 452 (1303)
Q Consensus 384 ~~~i~~v~Q~~~l~~-~ti~~ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqk 452 (1303)
+++||||+|+|.++. .|++||+.++. ..+.++ +.+.++..++.+ . .....-..||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~---~~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE-------R---FANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCG-------G---GTTCCGGGSCHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHH-------H---HHCCCHHHCCHHHH
T ss_conf 5557788041241768668887757888722478999999999999887624234-------5---53488023899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCCCEEEEEECCEEEECCCH
Q ss_conf 99999875204998899838999999898999999999861--99739998128741024678999849658410592
Q 000751 453 IKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRNADYIAVMDEGRLFEMGTH 528 (1303)
Q Consensus 453 qrialARal~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~--~~~t~i~i~h~~~~~~~~d~i~~l~~G~i~~~g~~ 528 (1303)
||++|||||..+|++|+||||||+||+.+...+.+.+.++. .|.|+|+|||+++.++.||+|++|++|+|+++|+.
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 999987565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.1e-42 Score=341.15 Aligned_cols=221 Identities=21% Similarity=0.383 Sum_probs=186.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH-------
Q ss_conf 4899979998499999985121138850997899987999928899999940489998589989950699898-------
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKL------- 380 (1303)
Q Consensus 308 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~------- 380 (1303)
.|+++|++++|. +..+|+||||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++...+.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf 699997899989---99988150668869979999989998299999999747667899779999993367752000023
Q ss_pred ------HHHHCCEEEEECCCCCCC-HHHHHHHHCCC----CCCH----HHHHHHHHHHCCHHHHH-HCCCCCCCCCCCCC
Q ss_conf ------887424188904565552-73999984199----9999----99999999813147797-31024475235799
Q 000751 381 ------EWLRSQIGLVTQEPALLS-LSIRDNIAYGR----DATL----DQIEEAAKIAHAHTFIS-SLEKGYETQVGRAG 444 (1303)
Q Consensus 381 ------~~~~~~i~~v~Q~~~l~~-~ti~~ni~~~~----~~~~----~~~~~~~~~~~~~~~i~-~l~~g~~t~ig~~g 444 (1303)
..+|++||||+|+|.+|. .|+.||+.++. ..+. +++.++++.+++.+... +.|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf 517679997454489983323141101021365657876299989999999999998299524430682-----------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCC-CCEEEEEECCEE
Q ss_conf 9899489999999875204998899838999999898999999999861-99739998128741024-678999849658
Q 000751 445 LALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRN-ADYIAVMDEGRL 522 (1303)
Q Consensus 445 ~~LSgGqkqrialARal~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~-~~~t~i~i~h~~~~~~~-~d~i~~l~~G~i 522 (1303)
..||||||||++|||||..+|++++|||||++||+.+...+.+.++++. +|+|+|+|||++..+.. ||||++|.+|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf 20567788898999998439987885245556887888899876554103688338994899999986999999979999
Q ss_pred EECCCHHHHHHCC--HHHHHHH
Q ss_conf 4105927895249--0689999
Q 000751 523 FEMGTHDELLATG--DLYAELL 542 (1303)
Q Consensus 523 ~~~g~~~~l~~~~--~~~~~~~ 542 (1303)
++.|++++++.+. ....+++
T Consensus 228 v~~g~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 228 EEEGDPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp EEEECHHHHHHSCCSHHHHHHH
T ss_pred EEECCHHHHHHCCCCHHHHHHH
T ss_conf 9984999998389999999988
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-41 Score=333.69 Aligned_cols=212 Identities=23% Similarity=0.324 Sum_probs=179.6
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 489997999849999998512113885099789998799992889999994048999858998995069989888742-4
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS-Q 386 (1303)
Q Consensus 308 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~ 386 (1303)
-++++|++++|. +..+|+||||++++||+++|+||||||||||+++|.|+++|++|+|.++|+++...++...++ .
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf 699977899979---96887121799889979999999998499999999779768873799999966405699999833
Q ss_pred EEEEECCCCCCC-HHHHHHHHCCCC----------------CCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 188904565552-739999841999----------------99999----999999813147797310244752357999
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGRD----------------ATLDQ----IEEAAKIAHAHTFISSLEKGYETQVGRAGL 445 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~~----------------~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~ 445 (1303)
|+|++|+|.+|. .|++||+.++.. ..+++ ..+.++.. |++........
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL-----------KLSHLYDRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT-----------TCGGGTTSBGG
T ss_pred CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC-----------CCCHHCCCCHH
T ss_conf 8725776424788742321430133303450456654213532899999999998761-----------96302059535
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCC-CCCEEEEEECCEEE
Q ss_conf 899489999999875204998899838999999898999999999861-9973999812874102-46789998496584
Q 000751 446 ALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLF 523 (1303)
Q Consensus 446 ~LSgGqkqrialARal~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~-~~~t~i~i~h~~~~~~-~~d~i~~l~~G~i~ 523 (1303)
.||||||||++||||+..+|++|||||||++||+.+...+.+.+++++ +|.|+|+|+|+++.+. .||+|++|++|+++
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf 69918888999999997592723243976569999999999999999978998999947699999869999999699899
Q ss_pred ECCCHHHHHH
Q ss_conf 1059278952
Q 000751 524 EMGTHDELLA 533 (1303)
Q Consensus 524 ~~g~~~~l~~ 533 (1303)
++|+++|+..
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEECHHHHHH
T ss_conf 9966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3e-41 Score=333.44 Aligned_cols=218 Identities=22% Similarity=0.383 Sum_probs=181.7
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 489997999849999998512113885099789998799992889999994048999858998995069989888742-4
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRS-Q 386 (1303)
Q Consensus 308 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~ 386 (1303)
-|+++|++++|. +..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.|+...+....++ .
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEC---CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 799961899989---98888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEEECCCCCCC-HHHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 188904565552-73999984199--999999999999813147797310244752357999899489999999875204
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL 463 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~ 463 (1303)
++|++|++.+|. -|++||+.++. ....+...+...... +... ++..........||||||||++||||+..
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~----~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFP----RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCH----HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHH----CHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 35567655457763699999988873278889999999999--8741----76888758543389999999999999982
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEECCCHHHHHHC
Q ss_conf 998899838999999898999999999861-9973999812874102-4678999849658410592789524
Q 000751 464 NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 464 ~~~ililDE~ts~lD~~~~~~~~~~l~~~~-~~~t~i~i~h~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
+|++|+|||||++||+.+...+.+.++++. +|+|+|++||+++.+. .||+|++|++|+++++|+++++...
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 9987400398867999999999999999996899899995889999996999999989999998489998429
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.1e-40 Score=326.81 Aligned_cols=213 Identities=24% Similarity=0.382 Sum_probs=183.3
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 64899979998499999985121138850997899987999928899999940489998589989950699898887424
Q 000751 307 GNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQ 386 (1303)
Q Consensus 307 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 386 (1303)
|.|+++|++++|. +.++|+|+||++++||+++|+||||||||||+++|.|++.|++|+|.++|.|+.+ ....+++.
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEEEEEEEC---CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf 9789995899999---9999806256884897999999999999999999966988788879998672446-83988721
Q ss_pred EEEEECCCCCCC-HHHHHHHHCCC---CCCHHHHHH----HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 188904565552-73999984199---999999999----9998131477973102447523579998994899999998
Q 000751 387 IGLVTQEPALLS-LSIRDNIAYGR---DATLDQIEE----AAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIA 458 (1303)
Q Consensus 387 i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~~~~~~----~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialA 458 (1303)
++||||++.+|. .|+.||+.+.. .....++.+ +++...+. .........||||||||++||
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~lSgG~~qrv~iA 145 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRKLLIA 145 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHCCHHHHHHHHHH
T ss_conf 867500154687866778889899861799899999999999867978-----------888504533799898999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCC-CCCEEEEEECCEEEECCCHHHHHHC
Q ss_conf 75204998899838999999898999999999861-9973999812874102-4678999849658410592789524
Q 000751 459 RAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIR-NADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 459 Ral~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~-~~~t~i~i~h~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
||++.+|++++|||||++||+.+...+.+.++++. +|+|+|++||+++.+. .||+|++|++|+++..|+++++...
T Consensus 146 ~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 146 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 998659998873379889798999999999999996599899995989999996999999989999999289999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.6e-39 Score=317.24 Aligned_cols=207 Identities=29% Similarity=0.432 Sum_probs=174.3
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89997999849999998512113885099789998799992889999994048999858998995069989888742418
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
+++ ++..+|. + ..+ |+||++. +++++|+||||||||||+++|.|+++|++|+|.++|.|+.++++. ++.||
T Consensus 3 l~v-~~~k~~g---~-~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLG---N-FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEET---T-EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEEC---C-EEE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf 999-9999989---9-999-9999749-979999979998099999999739998962899999998869989--92852
Q ss_pred EEECCCCCCC-HHHHHHHHCCC-CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8904565552-73999984199-99999----999999981314779731024475235799989948999999987520
Q 000751 389 LVTQEPALLS-LSIRDNIAYGR-DATLD----QIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVL 462 (1303)
Q Consensus 389 ~v~Q~~~l~~-~ti~~ni~~~~-~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~ 462 (1303)
||+|++.+|. .||+||+.++. ..+.. ++.++++.+++.++ .......||||||||++||||++
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~-----------~~~~~~~LSGG~kQRvaiAral~ 142 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-----------LDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTT-----------TTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH-----------HHCCHHHCCHHHHHHHHHHHHHH
T ss_conf 2523144352201557666532336778899999999986383756-----------65794448999989999987775
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCC-CCEEEEEECCEEEECCCHHHHHHCC
Q ss_conf 4998899838999999898999999999861--99739998128741024-6789998496584105927895249
Q 000751 463 LNPSILLLDEVTGGLDFEAERAVQEALDLLM--LGRSTIIIARRLSLIRN-ADYIAVMDEGRLFEMGTHDELLATG 535 (1303)
Q Consensus 463 ~~~~ililDE~ts~lD~~~~~~~~~~l~~~~--~~~t~i~i~h~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 535 (1303)
.+|++++|||||++||+.+...+.+.++++. .+.|+|++||+++.+.. ||+|++|++|++++.|+++++++..
T Consensus 143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf 1677067528655588799999999999998743976999818999999969999999899999990699983299
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-39 Score=319.37 Aligned_cols=211 Identities=23% Similarity=0.399 Sum_probs=183.0
Q ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 28997558987999985201101588638979999827999868899987056658865899999607999978764136
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
-++++||+.+| +|+||||+|++||.+||+||||||||||+++|.|++ |.+|+|.++|.|+...+...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf 99998741571-------555888899489899999899980999999994887-9955999999999869989998640
Q ss_pred EEECCCCC-CCCCCHHHHHHCCCCCCC-HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-
Q ss_conf 88836786-672128999971888999-999999999952699998199986642378888889589999999999703-
Q 000751 1133 GLVQQEPI-IFSTTIRENIIYARHNAS-EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLK- 1209 (1303)
Q Consensus 1133 ~~V~Q~p~-Lf~gTIreNI~~g~~~~~-~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~- 1209 (1303)
+|++|+.. .|..++.+|+.++..+.. .+.+.++++..++ +..++....+||||||||++||||+++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC-----------HHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf 24512135774420988764100146689999999986598-----------7676768445699889999999999851
Q ss_pred ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH-HHCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf ------9999998477899998989999999998441992999983390167-405989999698998834957896407
Q 000751 1210 ------NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMM-RHVDNIVVLNGGRIVEEGTHDSLLAKN 1282 (1303)
Q Consensus 1210 ------~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti-~~aD~Iivl~~G~Ive~Gt~~eLl~~~ 1282 (1303)
+|+|++|||||++||+.+...+.+.++++...++|+|+++|+++.+ ..||+|++|++|+|++.|+++|++...
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 71338998899971877778989999999999999867999999967799999979999999799899988999981886
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-36 Score=297.86 Aligned_cols=207 Identities=21% Similarity=0.320 Sum_probs=179.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 89997999849999998512113885099789998799992889999994048999858998995069989888742418
Q 000751 309 IEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIG 388 (1303)
Q Consensus 309 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 388 (1303)
++++||+++| .|++|||++++||+++|+||||||||||+++|.|+. |++|+|.++|+++...+...++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 9998741571-------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EEECCCC-CCCHHHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--
Q ss_conf 8904565-55273999984199--999999999999813147797310244752357999899489999999875204--
Q 000751 389 LVTQEPA-LLSLSIRDNIAYGR--DATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLL-- 463 (1303)
Q Consensus 389 ~v~Q~~~-l~~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~-- 463 (1303)
|++|+.. .|..++.+++.++. ....+.+.++++..++.++ ++.....||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHHHHHC
T ss_conf 4512135774420988764100146689999999986598767-----------67684456998899999999998517
Q ss_pred -----CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCC-CCCCEEEEEECCEEEECCCHHHHHHC
Q ss_conf -----998899838999999898999999999861-997399981287410-24678999849658410592789524
Q 000751 464 -----NPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLI-RNADYIAVMDEGRLFEMGTHDELLAT 534 (1303)
Q Consensus 464 -----~~~ililDE~ts~lD~~~~~~~~~~l~~~~-~~~t~i~i~h~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 534 (1303)
+|++++|||||++||+.+...+.+.++++. +|.|+|+++|+++.+ ..||++++|++|++++.|++++++..
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf 133899889997187777898999999999999986799999996779999997999999979989998899998188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.4e-35 Score=289.16 Aligned_cols=191 Identities=19% Similarity=0.383 Sum_probs=156.5
Q ss_pred CEEEEEEEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 28997558987999985201101588638979999827999868899987056658865899999607999978764136
Q 000751 1053 SIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|+++|++++|+ + ++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++. .+|.++
T Consensus 2 ~lev~~ls~~y~-~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-K---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 72 (200)
T ss_dssp EEEEEEEEEESS-S---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred EEEEEEEEEEEC-C---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHH-----HHCCCE
T ss_conf 599998999939-9---2884208898599899999999971999999996620567788999989626-----736708
Q ss_pred EEECCCCCCCCC-CHHHHHHCC----CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 888367866721-289999718----889999999999999526999981999866423788888895899999999997
Q 000751 1133 GLVQQEPIIFST-TIRENIIYA----RHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVV 1207 (1303)
Q Consensus 1133 ~~V~Q~p~Lf~g-TIreNI~~g----~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAl 1207 (1303)
+|+||++.++.. |+.||+.+. ....+++++.++++...+. +++..+ .+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DLKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CTTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--------CCCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 999501357888289999999997548863799999999874885--------630126----86897188889999988
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEEC
Q ss_conf 03999999847789999898999999999844199299998339016740598999969
Q 000751 1208 LKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNG 1266 (1303)
Q Consensus 1208 l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~aD~Iivl~~ 1266 (1303)
+.+|+++||||||++||+++...+++.+.+..+++.++| |+|+- .+..||++.+|..
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~i-i~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI-ISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEE-EEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE-EEEEC-HHHHCCHHHHEEE
T ss_conf 649989998686201699999999999999986799999-99916-2544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.2e-33 Score=274.19 Aligned_cols=190 Identities=19% Similarity=0.372 Sum_probs=156.9
Q ss_pred CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 48999799984999999851211388509978999879999288999999404899985899899506998988874241
Q 000751 308 NIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQI 387 (1303)
Q Consensus 308 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i 387 (1303)
.|+++|++|+|+ .++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|.++.. .+.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf 599998999939----928842088985998999999999719999999966205677889999896267-----36708
Q ss_pred EEEECCCCCCC-HHHHHHHHC-----CCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88904565552-739999841-----999999999999998131477973102447523579998994899999998752
Q 000751 388 GLVTQEPALLS-LSIRDNIAY-----GRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAV 461 (1303)
Q Consensus 388 ~~v~Q~~~l~~-~ti~~ni~~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal 461 (1303)
+|++|++.++. -|+.||+.+ +...+++++.++++...+.+ ++..+ ..||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~----~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL----GELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG----GGSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCC----CCCCCCHHHHHHHHHHH
T ss_conf 9995013578882899999999975488637999999998748856--------30126----86897188889999988
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 0499889983899999989899999999986199739998128741024678999849
Q 000751 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMDE 519 (1303)
Q Consensus 462 ~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~~~~d~i~~l~~ 519 (1303)
+.+|+++||||||++||+++.+.+.+.+.+..+++++++++|+- .+..||.+.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 64998999868620169999999999999998679999999916-2544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=1.4e-23 Score=195.72 Aligned_cols=315 Identities=14% Similarity=0.187 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78876654797999999999999989878799999999999851875023347879999999999999999999999999
Q 000751 716 FWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHLREEVNKWCLIIACMGVVTVVANFLQHFY 795 (1303)
Q Consensus 716 ~~~l~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 795 (1303)
+++++.+.++.++.+.++.++..+.+++.+..+++++.+++....... ......+...++++.++..++.+++.+.
T Consensus 4 ~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD----RSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT----HHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999998744687----7899999999999999764533546654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999809943300146773469999981399999999998999999999999999999999799
Q 000751 796 FGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLEWR 875 (1303)
Q Consensus 796 ~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~~~~~~ 875 (1303)
..+.+.++..++|.++++++++.|+.+|++ +++|++.+++++|++.+...+...+...+.....+++.+++++.++|.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 157 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 157 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 434310001100047777650101111023--332211111212121000011111200112334456688888765200
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999778899999999999999999941999998135189999999999999999999999
Q 000751 876 LALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLHGM 955 (1303)
Q Consensus 876 l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~i~gi~tI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1303)
+++++++.+|+.........+...+..++.++...+....+.|.+.|++++|+++.++.+.+++++..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 237 (319)
T d3b60a2 158 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21025668999999887666687787898876445677887776248723531110102456666653135677888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999999999969863386597889999999999999978888649999999999999999981299
Q 000751 956 AIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVP 1035 (1303)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1303)
...........+..+..+++++++++++..|.+++|+++..+.+......++.........+.++..+.+|+++++|.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 77740640100000023799999999998099789999999999999999999999999999999999999999966998
Q ss_pred C
Q ss_conf 9
Q 000751 1036 K 1036 (1303)
Q Consensus 1036 ~ 1036 (1303)
|
T Consensus 318 E 318 (319)
T d3b60a2 318 E 318 (319)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=3.3e-22 Score=185.00 Aligned_cols=263 Identities=15% Similarity=0.222 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999809934681048822599999955999999999999
Q 000751 30 SELALYIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKV 109 (1303)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~g~l~sr~~~Dv~~i~~~~~~~~ 109 (1303)
...++.++.+.+...++.+++.++....+.+...++|.+++++++++|..+|++. ++|++++++++|++.+++.+...+
T Consensus 56 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~ 134 (319)
T d3b60a2 56 LWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGAL 134 (319)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999999997645335466544343100011000477776501011110233-322111112121210000111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 99998999999999999988499999999999999999999999999999999999999999999998218999984216
Q 000751 110 GNYIHNMATFFSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNE 189 (1303)
Q Consensus 110 ~~~~~~~~~~~~~~v~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e 189 (1303)
...+..+..+++.+++++.++|.+++++++..|+..++.....++..+..++.++..++..+...|.++|++++|+|++|
T Consensus 135 ~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e 214 (319)
T d3b60a2 135 ITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQ 214 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCC
T ss_conf 00112334456688888765200210256689999998876666877878988764456778877762487235311101
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999889999999999999999999999980776677799999999999999999999
Q 000751 190 TLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAAT 269 (1303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 269 (1303)
+.+.+++++..++..+...+.............+...+..++++++|.+++.+|.++.|++++++.+......|+..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~ 294 (319)
T d3b60a2 215 EVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN 294 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02456666653135677888887777406401000000237999999999980997899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999997246988
Q 000751 270 NFYSFDQGRIAAYRLYEMISRSSS 293 (1303)
Q Consensus 270 ~~~~~~~~~~a~~ri~~~l~~~~~ 293 (1303)
.+..++++.++.+|+.+++|.++|
T Consensus 295 ~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 295 VNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999999669989
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=1.8e-23 Score=194.84 Aligned_cols=252 Identities=16% Similarity=0.128 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999998099346810488225999999559999999999999999899999
Q 000751 40 AGGVFAAGWIEVSCWILTGERQTAVIRSRYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATF 119 (1303)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~~g~l~sr~~~Dv~~i~~~~~~~~~~~~~~~~~~ 119 (1303)
.+...++.+++.++....+.+...++|.+++++++++|+.+|+++ ++|++++++++|++.+++.+...+...+..+..+
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 149 (323)
T d2hyda2 71 VIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITI 149 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHH
T ss_conf 999999999999999999985567788887665402332100012-2211000111133210011134542011146653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 99999999884999999999999999999999999999999999999999999999982189999842169999999999
Q 000751 120 FSGLAIAFVNCWQIALITLCTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATS 199 (1303)
Q Consensus 120 ~~~~v~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~ 199 (1303)
++.+++++.++|.++++.++..|+..++.....++..+..++.++..++..+...|.++|++++|.|++|+.+.++|.+.
T Consensus 150 i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~ 229 (323)
T d2hyda2 150 IIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKK 229 (323)
T ss_dssp HHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCC
T ss_conf 34654400001468889999887777777641233320267789899999978788755970234676411100233022
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998899999999999999999999999807766777999999999999999999999999999999
Q 000751 200 LQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVTHNKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRI 279 (1303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 279 (1303)
.++..+...+..............+..+..++.+++|.+++.+|.++.|++++++.+......|+..+...+..+.++.+
T Consensus 230 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 309 (323)
T d2hyda2 230 NTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFA 309 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31111015677652000011111012055899999999999849988999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999724698
Q 000751 280 AAYRLYEMISRSS 292 (1303)
Q Consensus 280 a~~ri~~~l~~~~ 292 (1303)
+.+|+.+++|+++
T Consensus 310 s~~Ri~elLd~e~ 322 (323)
T d2hyda2 310 SMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999977999
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.94 E-value=3.3e-22 Score=184.97 Aligned_cols=317 Identities=14% Similarity=0.113 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887665479799999999999998987879999999999985187502334---78799999999999999999999999
Q 000751 717 WRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLIVTAYYKPEERHHL---REEVNKWCLIIACMGVVTVVANFLQH 793 (1303)
Q Consensus 717 ~~l~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~ 793 (1303)
++++.+.++.++.+....+...+.+.+....+++++.++|........... ..........+.++.++..++.+++.
T Consensus 3 Krl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (323)
T d2hyda2 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (323)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999862677421556899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998099433001467734699999813999999999989999999999999999999997
Q 000751 794 FYFGIMGEKMTERVRRMMFSAMLRNEVGWFDEEENSADTLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAVIIGMLLE 873 (1303)
Q Consensus 794 ~~~~~~~~~~~~~lr~~l~~~il~~~~~~f~~~~~~~g~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~i~~i~~~~~~~ 873 (1303)
+...+.+.++..++|.+++++++++|++||++ +++|++++|+++|++.+...+...+...+..+..+++.+++++.++
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (323)
T d2hyda2 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999998556778888766540233210001--2221100011113321001113454201114665334654400001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999997788999999999999999999419999981351899999999999999999999
Q 000751 874 WRLALVALATLPILSLSAIAQKLWLAGFSRGIQKMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFTKSFLH 953 (1303)
Q Consensus 874 ~~l~li~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~i~gi~tI~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1303)
|.++++.++..|+..+......+...+..++..+...+..+.+.|.++|+++||.++.++.+.++|++..++..+...+.
T Consensus 161 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~ 240 (323)
T d2hyda2 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (323)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHH
T ss_conf 46888999988777777764123332026778989999997878875597023467641110023302231111015677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999698633865978899999999999999788886499999999999999999812
Q 000751 954 GMAIGFAFGFSQFLLFACNALLLWYTGKSVRDGYMDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDR 1033 (1303)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1303)
.........+...+..+...++++++++.+..|.+++|.++....+......++.........+.++..+++|+++++|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~ 320 (323)
T d2hyda2 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65200001111101205589999999999984998899999999999999999999999999999999999999999779
Q ss_pred CC
Q ss_conf 99
Q 000751 1034 VP 1035 (1303)
Q Consensus 1034 ~~ 1035 (1303)
+|
T Consensus 321 e~ 322 (323)
T d2hyda2 321 DY 322 (323)
T ss_dssp CC
T ss_pred CC
T ss_conf 99
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.54 E-value=1.7e-16 Score=140.34 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=109.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99998279998688999870566588658999996079999787641368883678667212899997188899999999
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVK 1163 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~~~~~ei~ 1163 (1303)
+++|+||+|||||||++.+++++++..|.+.+++.+....+...........++.+.++..+..++...++.....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023037625--
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHHCC
Q ss_conf 9999952699998199986642378888889589999999999703999999847789999--89899999999984419
Q 000751 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIE--SESSRVVQEALDTLIMG 1241 (1303)
Q Consensus 1164 ~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~p~ILlLDEaTSaLD--~~te~~I~~~l~~~~~~ 1241 (1303)
..+|+|++|+.++++++.++|+++++|||+...+ .+....+.+.++ ..
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~---~~ 129 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH---DP 129 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT---CT
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHC---CC
T ss_conf ---------------------------665320137899999974099742302777310045799999998750---57
Q ss_pred CCEEEEEECCCHHHHHCCEEEEEECCEEEEECC
Q ss_conf 929999833901674059899996989988349
Q 000751 1242 NKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGT 1274 (1303)
Q Consensus 1242 ~~TvI~IaHrl~ti~~aD~Iivl~~G~Ive~Gt 1274 (1303)
++|+|+++|+.+....||++..+.+|++++.+.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 978999974477898636599871999999899
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.41 E-value=5.5e-15 Score=128.63 Aligned_cols=158 Identities=9% Similarity=0.038 Sum_probs=105.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHCCC-CCCHHHHH
Q ss_conf 89998799992889999994048999858998995069989888742418890456555273999984199-99999999
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGR-DATLDQIE 417 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~ 417 (1303)
+++|+||+|||||||++.+.|.+++..|.+.+++.+....+............+.+.++..+...+...++ ....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV---- 77 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECH----
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 8999989993899999999814888864699877132888876531123366777887541134554430230376----
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-C-CC
Q ss_conf 999981314779731024475235799989948999999987520499889983899999989899999999986-1-99
Q 000751 418 EAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL-M-LG 495 (1303)
Q Consensus 418 ~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDE~ts~lD~~~~~~~~~~l~~~-~-~~ 495 (1303)
....+++|+++|.++++++.++|+++++|||....+. . ..+...+.+. . .+
T Consensus 78 -------------------------~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~-~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 78 -------------------------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-S-KKFRDLVRQIMHDPN 130 (178)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-C-HHHHHHHHHHHTCTT
T ss_pred -------------------------CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH-H-HHHHHHHHHHHCCCC
T ss_conf -------------------------2566532013789999997409974230277731004-5-799999998750579
Q ss_pred CEEEEEECCCCCCCCCCEEEEEECCEEEECCC
Q ss_conf 73999812874102467899984965841059
Q 000751 496 RSTIIIARRLSLIRNADYIAVMDEGRLFEMGT 527 (1303)
Q Consensus 496 ~t~i~i~h~~~~~~~~d~i~~l~~G~i~~~g~ 527 (1303)
.++|+++|+.+....+|++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 78999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=9.4e-12 Score=103.46 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEE
Q ss_conf 8895899999999997----039999998477899998989999999998441992999983390167405989999
Q 000751 1192 DLTPGQKQRIAIARVV----LKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVL 1264 (1303)
Q Consensus 1192 ~LSGGQkQRiaLARAl----l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~aD~Iivl 1264 (1303)
.+|||||.++++|-.+ ..++|+++||||+++||+.....+.+.|......+.-+|+|||++.++..+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=1.9e-10 Score=93.26 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCEEEEE
Q ss_conf 98994899999998752----04998899838999999898999999999861-997399981287410246789998
Q 000751 445 LALTEEQKIKLSIARAV----LLNPSILLLDEVTGGLDFEAERAVQEALDLLM-LGRSTIIIARRLSLIRNADYIAVM 517 (1303)
Q Consensus 445 ~~LSgGqkqrialARal----~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~-~~~t~i~i~h~~~~~~~~d~i~~l 517 (1303)
..||||||.++++|-.+ +.++++++||||+++||+.....+.+.+.+.. .+.-+|+|||++..+..+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=1.7e-09 Score=85.83 Aligned_cols=75 Identities=23% Similarity=0.354 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCEEEE--EE
Q ss_conf 8895899999999997----03999999847789999898999999999844199299998339016740598999--96
Q 000751 1192 DLTPGQKQRIAIARVV----LKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVV--LN 1265 (1303)
Q Consensus 1192 ~LSGGQkQRiaLARAl----l~~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ti~~aD~Iiv--l~ 1265 (1303)
.+|+|||+.+.++..+ ..+++++++|||-++|++.....+.+.|++... +.-+|++||++..+..+|+++. |+
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 02577766777776655654226744554320335797899999999998554-88799998988999732428999996
Q ss_pred CC
Q ss_conf 98
Q 000751 1266 GG 1267 (1303)
Q Consensus 1266 ~G 1267 (1303)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
T ss_conf 99
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=1e-08 Score=79.75 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEE--EE
Q ss_conf 9899489999999875----20499889983899999989899999999986199739998128741024678999--84
Q 000751 445 LALTEEQKIKLSIARA----VLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLIRNADYIAV--MD 518 (1303)
Q Consensus 445 ~~LSgGqkqrialARa----l~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~~~~d~i~~--l~ 518 (1303)
..+|+|||+...++.. ...++.+++.|||-++|++...+.+.+.+....++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf 10257776677777665565422674455432033579789999999999855488799998988999732428999996
Q ss_pred CCE
Q ss_conf 965
Q 000751 519 EGR 521 (1303)
Q Consensus 519 ~G~ 521 (1303)
+|.
T Consensus 298 ~g~ 300 (308)
T d1e69a_ 298 NGV 300 (308)
T ss_dssp SSC
T ss_pred CCE
T ss_conf 999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.99 E-value=0.0049 Score=35.50 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCCCCCHHHHHHH-HHHHHHHC-CCCEEEEEECCCCCCC
Q ss_conf 49988998389999998989999-99999861-9973999812874102
Q 000751 463 LNPSILLLDEVTGGLDFEAERAV-QEALDLLM-LGRSTIIIARRLSLIR 509 (1303)
Q Consensus 463 ~~~~ililDE~ts~lD~~~~~~~-~~~l~~~~-~~~t~i~i~h~~~~~~ 509 (1303)
.+..++++||...+=++.....+ ...+..+. .+.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.85 E-value=0.012 Score=32.37 Aligned_cols=35 Identities=14% Similarity=0.179 Sum_probs=27.4
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 85121138850997899987999928899999940
Q 000751 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 325 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+.|+++..=+.+|+.+.|.|++|+||||++.-+..
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 66888746978980899994799979999999997
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.79 E-value=0.013 Score=32.06 Aligned_cols=140 Identities=20% Similarity=0.239 Sum_probs=69.4
Q ss_pred CEEEEEEEEECCC----CCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCC-EEEECCEE
Q ss_conf 4899979998499----99998512113885099789998799992889999994--------04899985-89989950
Q 000751 308 NIEFRNVYFSYLS----RPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME--------RFYDPTLG-EVLLDGEN 374 (1303)
Q Consensus 308 ~i~~~~v~~~y~~----~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~--------~~~~~~~G-~i~~~g~~ 374 (1303)
.+++++.. +|- .++..+=+++++. +.+....|.|||.+||||++|.+. |.+-|.+- ++.+-
T Consensus 11 ~l~i~~~r--HPlle~~~~~~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~--- 84 (234)
T d1wb9a2 11 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPI--- 84 (234)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCC---
T ss_pred CEEEEEEE--CCEEECCCCCCCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCCC---
T ss_conf 68999737--87797446998264057988-9953999954673136899998799999987297674176661344---
Q ss_pred CCCCCHHHHHCCEEEEECCCCCC-CHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 69989888742418890456555-27399998419999999999999981314779731024475235799989948999
Q 000751 375 IKNLKLEWLRSQIGLVTQEPALL-SLSIRDNIAYGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKI 453 (1303)
Q Consensus 375 ~~~~~~~~~~~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkq 453 (1303)
+ .+| .-...|++.-|...=..++.+..+. +
T Consensus 85 ------------------d-~I~~~~~~~d~~~~~~S~F~~E~~~~~~i------l------------------------ 115 (234)
T d1wb9a2 85 ------------------D-RIFTRVGAADDLASGRSTFMVEMTETANI------L------------------------ 115 (234)
T ss_dssp ------------------C-EEEEEEC-----------CHHHHHHHHHH------H------------------------
T ss_pred ------------------H-HHEEEECCCCCCCCCHHHHHHHHHHHHHH------H------------------------
T ss_conf ------------------2-02348746753436531899999999999------9------------------------
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-HHHHHHHHC-C-CCEEEEEECCCCCC
Q ss_conf 9999875204998899838999999898999-999999861-9-97399981287410
Q 000751 454 KLSIARAVLLNPSILLLDEVTGGLDFEAERA-VQEALDLLM-L-GRSTIIIARRLSLI 508 (1303)
Q Consensus 454 rialARal~~~~~ililDE~ts~lD~~~~~~-~~~~l~~~~-~-~~t~i~i~h~~~~~ 508 (1303)
--..+..++++||...+=++..... ....+..+. + +..+++.||.....
T Consensus 116 ------~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 116 ------HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp ------HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred ------HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf ------7454660885322235877456667898764543204544289852468776
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.73 E-value=0.0013 Score=39.95 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=22.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 6389799998279998688999870566588658999
Q 000751 1079 VNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLL 1115 (1303)
Q Consensus 1079 I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~i 1115 (1303)
++.|..+.|+|++||||||++++|+++.++..=-|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.69 E-value=0.016 Score=31.53 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=27.0
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0110158863897999982799986889998705
Q 000751 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1071 vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
.|+.+.--+.+|+.+.|.|++|+||||++.-+..
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 6888746978980899994799979999999997
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0068 Score=34.40 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCHHHHHH
Q ss_conf 85121138850997899987999928899999940489998589989950699898887424188904565552739999
Q 000751 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDN 404 (1303)
Q Consensus 325 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 404 (1303)
.++.+ +.+|+.+.|.|++|+|||||+--+.--.. .|.=.+++.... ...+-|+.-+.. ...+.+.
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~-------~~~vl~~~~E~~--~~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELP-------TGPVIYLPAEDP--PTAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCC-------CCCEEEEESSSC--HHHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCCC-------CCCEEEEECCCH--HHHHHHH
T ss_conf 98689----55895899992899989999999999997--699721112357-------873689851234--9999999
Q ss_pred HH-CCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----C
Q ss_conf 84-19999999999999981314779731024475235799989948999999987520499889983899999-----9
Q 000751 405 IA-YGRDATLDQIEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL-----D 478 (1303)
Q Consensus 405 i~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDE~ts~l-----D 478 (1303)
+. ++.+.+.+.......... .....+....... ... +.-......+++++++|--.+.. |
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~lvviD~l~~~~~~~~~~ 151 (274)
T d1nlfa_ 86 LHALGAHLSAEERQAVADGLL-----------IQPLIGSLPNIMA--PEW-FDGLKRAAEGRRLMVLDTLRRFHIEEENA 151 (274)
T ss_dssp HHHHHTTSCHHHHHHHHHHEE-----------ECCCTTSCCCTTS--HHH-HHHHHHHHTTCSEEEEECGGGGCCSCTTC
T ss_pred HHHHHHCCCHHHHHCCCCCCE-----------ECCCCCCCCHHHH--HHH-HHHHHHHCCCCCEEECCCHHHHCCCCCCC
T ss_conf 999862368666531233323-----------2145674203578--999-99988752676589628135422665232
Q ss_pred HHHHHHHHHHHHHHC--CCCEEEEEECC
Q ss_conf 898999999999861--99739998128
Q 000751 479 FEAERAVQEALDLLM--LGRSTIIIARR 504 (1303)
Q Consensus 479 ~~~~~~~~~~l~~~~--~~~t~i~i~h~ 504 (1303)
......+...+..+. .+++++++.|-
T Consensus 152 ~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 152 SGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEHHHHC
T ss_conf 2568999988777764479754013100
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.41 E-value=0.0015 Score=39.44 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8979999827999868899987056658865899
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~ 1114 (1303)
+|++.+++|+||.|||||++.|.+-.....|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.026 Score=29.81 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=76.2
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHH
Q ss_conf 01101588638979999827999868899987056658865899999607999978764136888367866721289999
Q 000751 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI 1150 (1303)
Q Consensus 1071 vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI 1150 (1303)
++.+ +.||+.+.|+|++|+||||++.-|.--. ..|.=.+++.... ..++-|+.-|. ....+.+.+
T Consensus 22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~i--a~g~~~~~~~~~~-------~~~vl~~~~E~--~~~~~~~Rl 86 (274)
T d1nlfa_ 22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAAQI--AGGPDLLEVGELP-------TGPVIYLPAED--PPTAIHHRL 86 (274)
T ss_dssp EETT----EETTSEEEEEESTTSSHHHHHHHHHHHH--HTCCCTTCCCCCC-------CCCEEEEESSS--CHHHHHHHH
T ss_pred HHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHH--HCCCCCCCCCCCC-------CCCEEEEECCC--HHHHHHHHH
T ss_conf 8689----5589589999289998999999999999--7699721112357-------87368985123--499999999
Q ss_pred HCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-----CH
Q ss_conf 7188899999999999995269999819998664237888888958999999999970399999984778999-----98
Q 000751 1151 IYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSI-----ES 1225 (1303)
Q Consensus 1151 ~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~p~ILlLDEaTSaL-----D~ 1225 (1303)
.--..+.+.++.......... ....+ .....-....+.-.+....+++++++|--+... |.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~ 152 (274)
T d1nlfa_ 87 HALGAHLSAEERQAVADGLLI-----------QPLIG---SLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENAS 152 (274)
T ss_dssp HHHHTTSCHHHHHHHHHHEEE-----------CCCTT---SCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCH
T ss_pred HHHHHCCCHHHHHCCCCCCEE-----------CCCCC---CCCHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCH
T ss_conf 998623686665312333232-----------14567---4203578999999887526765896281354226652322
Q ss_pred HHHHHHHHHHHHHHC-CCCEEEEEECCCH------------------HH-HHCCEEEEEEC
Q ss_conf 989999999998441-9929999833901------------------67-40598999969
Q 000751 1226 ESSRVVQEALDTLIM-GNKTTILIAHRAA------------------MM-RHVDNIVVLNG 1266 (1303)
Q Consensus 1226 ~te~~I~~~l~~~~~-~~~TvI~IaHrl~------------------ti-~~aD~Iivl~~ 1266 (1303)
.....+.+.+..+.. .++++++|.|--. .+ ..+|.++.|..
T Consensus 153 ~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r 213 (274)
T d1nlfa_ 153 GPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS 213 (274)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf 5689999887777644797540131005554446886653356427778742558999983
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.27 E-value=0.027 Score=29.70 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=26.1
Q ss_pred CCCCEEE-EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 5121138-8509978999879999288999999404
Q 000751 326 ILSGFYL-TVPAKKAVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 326 ~l~~i~l-~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
-|+.+=- =+++|+.+.|.|++|||||+++.-+...
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 798845689869849999918999999999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.19 E-value=0.029 Score=29.41 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=70.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHH-HCCCCCC
Q ss_conf 638979999827999868899987056658865899999607999978764136888367866721289999-7188899
Q 000751 1079 VNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENI-IYARHNA 1157 (1303)
Q Consensus 1079 I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI-~~g~~~~ 1157 (1303)
+++|+.+-|.|++|||||++..-+..-.--..+. +.|+.-|-. ...++.+. .++ .
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~-------------------~~~is~e~~--~~~~~~~~~~~~---~ 78 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKER-------------------AILFAYEES--RAQLLRNAYSWG---M 78 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC-------------------EEEEESSSC--HHHHHHHHHTTS---C
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------------------CCEEECCCC--HHHHHHHHHHCC---C
T ss_conf 8698499999189999999999999999872324-------------------411212679--999999999829---9
Q ss_pred CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH-
Q ss_conf 999999999995269999819998664237888888958999999999970-399999984778999989899999999-
Q 000751 1158 SEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVL-KNAPILLLDEASSSIESESSRVVQEAL- 1235 (1303)
Q Consensus 1158 ~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll-~~p~ILlLDEaTSaLD~~te~~I~~~l- 1235 (1303)
+.+++.. .+....+......... +...-.+.+++- .++++++.|-.++.....+...+.+.+
T Consensus 79 ~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~ 142 (242)
T d1tf7a2 79 DFEEMER---------------QNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVI 142 (242)
T ss_dssp CHHHHHH---------------TTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHH
T ss_pred CHHHHHH---------------CCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHH
T ss_conf 8699854---------------5861799730001017-99999999999840885332204314304899999999999
Q ss_pred --HH-HHCCCCEEEEEECCCH----------HH-HHCCEEEEEEC
Q ss_conf --98-4419929999833901----------67-40598999969
Q 000751 1236 --DT-LIMGNKTTILIAHRAA----------MM-RHVDNIVVLNG 1266 (1303)
Q Consensus 1236 --~~-~~~~~~TvI~IaHrl~----------ti-~~aD~Iivl~~ 1266 (1303)
.. ....+.|++++.|... .+ ..+|.|+.|+.
T Consensus 143 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 143 GVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 999999986983999985675125544577640464216999998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.16 E-value=0.021 Score=30.57 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 850997899987999928899999940489
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
-+++...+.+.||+|+|||++++.+.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.032 Score=29.15 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=27.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 5099789998799992889999994048999858998995
Q 000751 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE 373 (1303)
Q Consensus 334 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 373 (1303)
+++...+.+.||+|||||++++.+...+... -+.++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~ 79 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHH
T ss_conf 9988867866899888228999999982998--7998869
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.06 E-value=0.034 Score=28.94 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=20.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 63897999982799986889998705665
Q 000751 1079 VNGGQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1079 I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+++..-+-+.||+|+|||++++++.+.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.04 E-value=0.003 Score=37.10 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=29.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9978999879999288999999404899985899
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVL 369 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 369 (1303)
+|++++++|+||.|||||++.|.+...-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.96 E-value=2.6e-05 Score=53.23 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 999827999868899987056658865899999
Q 000751 1085 VAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG 1117 (1303)
Q Consensus 1085 vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG 1117 (1303)
|.|+||.|+|||||++.+.+.+....+.+.+.+
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 999889997199999999999997799799998
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.93 E-value=0.0018 Score=38.89 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 978999879999288999999404899
Q 000751 337 KKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 337 g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
|+++.|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.91 E-value=0.0031 Score=37.04 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9799998279998688999870566588
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFYDPV 1109 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~~p~ 1109 (1303)
|+.+.|+||||||||||.+.|...++..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7499998999999999999998458997
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.81 E-value=0.0018 Score=38.86 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=27.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9978999879999288999999404899985899899
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 372 (1303)
.|+++.|.|++||||||+++.|...+... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.75 E-value=0.0079 Score=33.86 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=30.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 5099789998799992889999994048999858998
Q 000751 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 370 (1303)
Q Consensus 334 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 370 (1303)
+..+.-+.|+|++||||||+++.|.++.+|..--|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9837888999403566257899986530145623311
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0023 Score=38.05 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 89998799992889999994048999
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDPT 364 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 364 (1303)
.++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.67 E-value=0.047 Score=27.80 Aligned_cols=140 Identities=16% Similarity=0.247 Sum_probs=73.9
Q ss_pred CEEEEEEEEECC--CCCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCC-CCEEEECCEECC
Q ss_conf 289975589879--999852011015886389799998279998688999870--------566588-658999996079
Q 000751 1053 SIELKNVDFCYP--SRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIE--------RFYDPV-AGQVLLDGRDLK 1121 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~--~~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~--------rl~~p~-~G~I~idG~di~ 1121 (1303)
.+++++. ++| +.+...|=+|+++ . ++.+-|.||+.|||||+++.+. |.+-|. +.++
T Consensus 9 ~~~i~~~--rHPlle~~~~~VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i-------- 75 (224)
T d1ewqa2 9 RLQIRAG--RHPVVERRTEFVPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHL-------- 75 (224)
T ss_dssp SEEEEEE--CCTTGGGTSCCCCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEE--------
T ss_pred CEEEEEC--CCCEECCCCCEECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEE--------
T ss_conf 2789857--188794899754555884--7-86799978873453234556589999985250461375199--------
Q ss_pred CCCHHHHHCCEEEECCCCCCCC-CCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9997876413688836786672-128999971888999999999999952699998199986642378888889589999
Q 000751 1122 LYNLRWLRNHLGLVQQEPIIFS-TTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR 1200 (1303)
Q Consensus 1122 ~~~~~~lR~~i~~V~Q~p~Lf~-gTIreNI~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQR 1200 (1303)
|.-..+|. -...||+.-+... =..|+.+.. +.++.
T Consensus 76 --------------~~~d~I~~~~~~~d~~~~~~St-F~~el~~~~------~il~~----------------------- 111 (224)
T d1ewqa2 76 --------------PLFDGIYTRIGASDDLAGGKST-FMVEMEEVA------LILKE----------------------- 111 (224)
T ss_dssp --------------CCCSEEEEECCC------CCSH-HHHHHHHHH------HHHHH-----------------------
T ss_pred --------------EECCEEEEEECCCCCCCCCCCH-HHHHHHHHH------HHHCC-----------------------
T ss_conf --------------4011699998777602378307-898678898------77502-----------------------
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHH-HHHCCCCEEEEEECCCHHHH
Q ss_conf 999999703999999847789999898999999999-84419929999833901674
Q 000751 1201 IAIARVVLKNAPILLLDEASSSIESESSRVVQEALD-TLIMGNKTTILIAHRAAMMR 1256 (1303)
Q Consensus 1201 iaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~l~-~~~~~~~TvI~IaHrl~ti~ 1256 (1303)
..+..++|+||.-.+-|++-...+-.++- .+...+++++++||..+...
T Consensus 112 -------~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 -------ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp -------CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred -------CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf -------89772785545456862332002588888888623761378652023332
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.64 E-value=0.0095 Score=33.26 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=10.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
.+.++|++||||||+++.|.
T Consensus 4 lIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999999999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.051 Score=27.52 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=26.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 6389799998279998688999870566588658999996
Q 000751 1079 VNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGR 1118 (1303)
Q Consensus 1079 I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~ 1118 (1303)
+++...+-+.||+|+|||++++.+.+.+... -+.++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~ 79 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHH
T ss_conf 9988867866899888228999999982998--7998869
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.0062 Score=34.67 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=34.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCHHHH
Q ss_conf 78999879999288999999404899985899899506998988874241889045655527399
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIR 402 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~ 402 (1303)
=+++|.|++||||||+.+.|...+.-..+. ..+..+++|.+......+
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHH
T ss_conf 899996899998768999999997304689-----------------965999521568984588
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.47 E-value=0.0016 Score=39.19 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=18.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8979999827999868899987056658865899
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL 1114 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~ 1114 (1303)
+|++..++|+||.|||||++.|.+-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.46 E-value=0.006 Score=34.78 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=27.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8979999827999868899987056658865899999
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG 1117 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG 1117 (1303)
.|+.+.|+|++||||||+.+.|.+.+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf 9859999889999889999999999599--9799068
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.45 E-value=0.0057 Score=34.98 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999827999868899987056658865899999
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG 1117 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG 1117 (1303)
+.+.|+|++||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.45 E-value=0.0041 Score=36.10 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099789998799992889999994048
Q 000751 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 335 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+|-++.|+|.+||||||+.+.|..-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.43 E-value=0.0068 Score=34.36 Aligned_cols=50 Identities=26% Similarity=0.314 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 899987999928899999940489--998589989950699898887424188
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD--PTLGEVLLDGENIKNLKLEWLRSQIGL 389 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~ 389 (1303)
-++|+|+.|+|||||+..|+..-. ...|++. +|....+..+++..++++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti 55 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTV 55 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEE
T ss_conf 999994889809999999999709755306622-2211356269888738768
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.34 E-value=0.0088 Score=33.49 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.++++|++|+|||||++.|.+.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.011 Score=32.74 Aligned_cols=49 Identities=12% Similarity=0.303 Sum_probs=36.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHH
Q ss_conf 999982799986889998705665886589999960799997876413688836786672128999
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIREN 1149 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreN 1149 (1303)
.|||.|++||||||+.+.|..++.-..+ | .++..|++|.+..+...++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----~------------~~v~~Is~D~F~~~~~~l~~ 130 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----H------------RRVELITTDGFLHPNQVLKE 130 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----C------------CCEEEEEGGGGBCCHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----C------------CCEEEEEEEEEECCCHHHHH
T ss_conf 9999689999876899999999730468-----9------------96599952156898458888
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0076 Score=34.00 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9978999879999288999999404899
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
+|.++.|+||||+||+||.+.|...++.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~ 28 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPL 28 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9809999999999999999999863986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0059 Score=34.85 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=34.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC--------------CCEEEECCEECCCCCHHHHHCCE
Q ss_conf 89799998279998688999870566588--------------65899999607999978764136
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYDPV--------------AGQVLLDGRDLKLYNLRWLRNHL 1132 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~--------------~G~I~idG~di~~~~~~~lR~~i 1132 (1303)
.|..+.|+|||||||+||.+.|...++.. .|+ .||+|..-++.+.+.+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC--CCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655--432123343289999875
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.17 E-value=0.0064 Score=34.59 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879999288999999404899
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
+++|.|++|||||||++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.08 E-value=0.0056 Score=35.03 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 789998799992889999994048999
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYDPT 364 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~~~ 364 (1303)
+.++|+|.+|||||||+.-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.04 E-value=0.008 Score=33.83 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3897999982799986889998705665
Q 000751 1080 NGGQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1080 ~~Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
++|..|.|+|++||||||+.++|..-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0047 Score=35.65 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999982799986889998705665886
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVA 1110 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~ 1110 (1303)
.++|+|++|||||||++.|.+.+....
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g 30 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARG 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899991899989999999999999779
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.99 E-value=0.0028 Score=37.32 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99789998799992889999994048999858998
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 370 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 370 (1303)
+|++++++|+||.|||||++.|.+...-..|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.98 E-value=0.0082 Score=33.76 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997899987999928899999940489
Q 000751 335 PAKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 335 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
|+|-.+.|.|++||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.95 E-value=0.077 Score=26.15 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899987999928899999940489
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.-+.+.||+|||||++++.+.+.+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 6488766898883599999998739
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.078 Score=26.13 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=21.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 50997899987999928899999940
Q 000751 334 VPAKKAVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 334 i~~g~~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
-+.-+.+.++|++||||||+++-+..
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 99998999989999989999999997
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.91 E-value=0.037 Score=28.64 Aligned_cols=113 Identities=15% Similarity=0.270 Sum_probs=66.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCEECCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCH
Q ss_conf 0997899987999928899999940489998589-989950699898887424188904565552739999841999999
Q 000751 335 PAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEV-LLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATL 413 (1303)
Q Consensus 335 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~ 413 (1303)
.++..+.+.||+||||||.+..++...+.....| ++.. ++. +.. ..+ .|.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEd-PiE-~~~----~~~---~q~-------------------- 206 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED-PIE-FDI----DGI---GQT-------------------- 206 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES-SCC-SCC----SSS---EEE--------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECC-CCC-CCC----CCC---CEE--------------------
T ss_conf 410548987678777447799986662578746999626-743-456----788---702--------------------
Q ss_pred HHHHHHHHHHCCHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999999981314779731024475235-799989948999999987520499889983899999989899999999986
Q 000751 414 DQIEEAAKIAHAHTFISSLEKGYETQVG-RAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLL 492 (1303)
Q Consensus 414 ~~~~~~~~~~~~~~~i~~l~~g~~t~ig-~~g~~LSgGqkqrialARal~~~~~ililDE~ts~lD~~~~~~~~~~l~~~ 492 (1303)
.+. ..+. .---++..++-+||++++..|.. |.++..... ...
T Consensus 207 -------------------------~v~~~~~~------~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~---~aa 249 (401)
T d1p9ra_ 207 -------------------------QVNPRVDM------TFARGLRAILRQDPDVVMVGEIR---DLETAQIAV---QAS 249 (401)
T ss_dssp -------------------------ECBGGGTB------CHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHH---HHH
T ss_pred -------------------------EECCCCCC------CHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHH---HHH
T ss_conf -------------------------65587677------99999999984138889845768---759999999---997
Q ss_pred CCCCEEEEEECCCCCCCCCCE
Q ss_conf 199739998128741024678
Q 000751 493 MLGRSTIIIARRLSLIRNADY 513 (1303)
Q Consensus 493 ~~~~t~i~i~h~~~~~~~~d~ 513 (1303)
..|..|+..-|--+.....+|
T Consensus 250 ~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 250 LTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HTTCEEEEEECCSSSHHHHHH
T ss_pred HCCCEEEEEECCCCHHHHHHH
T ss_conf 249858998336766766543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.86 E-value=0.081 Score=25.98 Aligned_cols=88 Identities=22% Similarity=0.183 Sum_probs=49.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCH
Q ss_conf 38979999827999868899987056658865899999607999978764136888367866721289999718889999
Q 000751 1080 NGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASE 1159 (1303)
Q Consensus 1080 ~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~~~~ 1159 (1303)
++-+.+-++|++||||||+++-++.. .|-+.++. +.++ +.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~----------------------------~~ 51 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLG----------------------------SW 51 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHC----------------------------SH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHH----------------------------HH
T ss_conf 99989999899999899999999976----59789760--------7777----------------------------88
Q ss_pred HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCEEEEE
Q ss_conf 99999999952699998199986642378888889589999-99999970399999984
Q 000751 1160 AEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQR-IAIARVVLKNAPILLLD 1217 (1303)
Q Consensus 1160 ~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQR-iaLARAll~~p~ILlLD 1217 (1303)
+.+...++. .|..|.+..+. ..+++..+|++ +.+|+..=-+..++.+|
T Consensus 52 ~~~~~~~~~--------~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 52 QRCVSSCQA--------ALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHHH--------HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHHH--------HHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 899999999--------99779995551--76799999999999998558887999948
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.83 E-value=0.048 Score=27.72 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 998899838999999898999999999861997399981287410
Q 000751 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508 (1303)
Q Consensus 464 ~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~ 508 (1303)
+..++++||+-. +.......+.+.+.........|+++++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0078 Score=33.91 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=28.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCC
Q ss_conf 8999879999288999999404899985899899506998988874241889045655
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPAL 396 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l 396 (1303)
++||.|++||||||+.+.|...+.-..-. .....+.++++|.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~--------------~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD--------------YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC--------------GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC--------------CCCCCEEEEECCCCC
T ss_conf 99998999787999999999996410134--------------578843999346532
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.82 E-value=0.0097 Score=33.18 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997899987999928899999940489
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
..+++.|.|++||||||+++.|...+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.0001 Score=48.66 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=27.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 78999879999288999999404899985899899
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 372 (1303)
+.+.|+||+|+|||||++.+.+.+....+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 69999889997199999999999997799799998
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.69 E-value=0.013 Score=32.21 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3897999982799986889998705665
Q 000751 1080 NGGQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1080 ~~Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
++|-.|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.68 E-value=0.011 Score=32.87 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.66 E-value=0.014 Score=31.95 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999982799986889998705665
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.+.|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.55 E-value=0.0072 Score=34.17 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899987999928899999940489
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
+.++|.|++|||||||++.|...+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.52 E-value=0.017 Score=31.23 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8999879999288999999404899985
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDPTLG 366 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 366 (1303)
.++|+|++|+|||||++.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.51 E-value=0.01 Score=32.97 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099789998799992889999994048
Q 000751 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 335 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+.+.++.|+|++||||||+++.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.48 E-value=0.0045 Score=35.80 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=30.2
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 88509978999879999288999999404899--985899899506
Q 000751 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDP--TLGEVLLDGENI 375 (1303)
Q Consensus 332 l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~ 375 (1303)
+.-.+|.++.+.|.|||||||+.+.|...+.. ..-.+.+||.++
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 8589986999989999998999999998877742750899753678
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.013 Score=32.29 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3897999982799986889998705665
Q 000751 1080 NGGQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1080 ~~Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+.+..+.|+|++||||||+.+.|..-+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.41 E-value=0.013 Score=32.25 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999827999868899987056658
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
.|||.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.38 E-value=0.012 Score=32.36 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999982799986889998705665
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
++|+|.|++|||||||++.|...+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=0.015 Score=31.79 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=17.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9789998799992889999994048
Q 000751 337 KKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 337 g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
...+.|+||||+||+||++.|...+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.26 E-value=0.11 Score=24.99 Aligned_cols=141 Identities=17% Similarity=0.198 Sum_probs=72.8
Q ss_pred CEEEEEEEEECCC----CCCCCEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH--------CCCCCC-CCEEEECCEE
Q ss_conf 2899755898799----99852011015886389799998279998688999870--------566588-6589999960
Q 000751 1053 SIELKNVDFCYPS----RPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIE--------RFYDPV-AGQVLLDGRD 1119 (1303)
Q Consensus 1053 ~I~~~nVsf~Y~~----~~~~~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~--------rl~~p~-~G~I~idG~d 1119 (1303)
.+++++. ++|= .++..|=+++++.- .+..+-|.||+.|||||+++.+. |.+-|. +.++.+
T Consensus 11 ~l~i~~~--rHPlle~~~~~~~VpNdi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~---- 83 (234)
T d1wb9a2 11 GIRITEG--RHPVVEQVLNEPFIANPLNLSP-QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGP---- 83 (234)
T ss_dssp CEEEEEE--CCTTHHHHCSSCCCCEEEEECS-SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECC----
T ss_pred CEEEEEE--ECCEEECCCCCCCCCEEEEECC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEECCC----
T ss_conf 6899973--7877974469982640579889-95399995467313689999879999998729767417666134----
Q ss_pred CCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 79999787641368883678667212899997188899999999999995269999819998664237888888958999
Q 000751 1120 LKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQ 1199 (1303)
Q Consensus 1120 i~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQ 1199 (1303)
=|-.+..-...|++.-+... =..|+.+..+. ++
T Consensus 84 -----------------~d~I~~~~~~~d~~~~~~S~-F~~E~~~~~~i------l~----------------------- 116 (234)
T d1wb9a2 84 -----------------IDRIFTRVGAADDLASGRST-FMVEMTETANI------LH----------------------- 116 (234)
T ss_dssp -----------------CCEEEEEEC------------CHHHHHHHHHH------HH-----------------------
T ss_pred -----------------CHHHEEEECCCCCCCCCHHH-HHHHHHHHHHH------HH-----------------------
T ss_conf -----------------42023487467534365318-99999999999------97-----------------------
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHC-CCCEEEEEECCCHH
Q ss_conf 99999997039999998477899998989999999-998441-99299998339016
Q 000751 1200 RIAIARVVLKNAPILLLDEASSSIESESSRVVQEA-LDTLIM-GNKTTILIAHRAAM 1254 (1303)
Q Consensus 1200 RiaLARAll~~p~ILlLDEaTSaLD~~te~~I~~~-l~~~~~-~~~TvI~IaHrl~t 1254 (1303)
-..+..++|+||.-++=++.....+-.+ ++.+.. .++.+++.||....
T Consensus 117 -------~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 117 -------NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp -------HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred -------HCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf -------45466088532223587745666789876454320454428985246877
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.24 E-value=0.013 Score=32.25 Aligned_cols=29 Identities=21% Similarity=0.199 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 97899987999928899999940489998
Q 000751 337 KKAVALVGRNGSGKSSIIPLMERFYDPTL 365 (1303)
Q Consensus 337 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 365 (1303)
.++++|.|++||||||+++.|...+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.19 E-value=0.013 Score=32.19 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899987999928899999940489
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
..+.|+|++||||||+++.|...++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.15 E-value=0.017 Score=31.32 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.++++|++|+|||||++.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.08 E-value=0.0052 Score=35.25 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997899987999928899999940489
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
+|-++.++|++||||||+++.|...+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.08 E-value=0.017 Score=31.36 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=25.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 79999827999868899987056658865899999
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG 1117 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG 1117 (1303)
..+.|+|++||||||+++.|.+.++ +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.017 Score=31.22 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCC
Q ss_conf 999982799986889998705665886589999960799997876413688836786672
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFS 1143 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~ 1143 (1303)
.|||.|++||||||+.+.|...+..... + .-...+.++++|.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~----~----------~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV----D----------YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS----C----------GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC----C----------CCCCCEEEEECCCCCCC
T ss_conf 9999899978799999999999641013----4----------57884399934653224
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.011 Score=32.89 Aligned_cols=28 Identities=36% Similarity=0.525 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8979999827999868899987056658
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
+|..|.|+|++||||||+.+.|...+..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9969998899999999999999999974
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.023 Score=30.23 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999982799986889998705665
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.+.+.|+||||+||+||.+.|+..++
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.83 E-value=0.13 Score=24.40 Aligned_cols=42 Identities=12% Similarity=0.316 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf 99999984778999989899999999984419929999833901
Q 000751 1210 NAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAA 1253 (1303)
Q Consensus 1210 ~p~ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaHrl~ 1253 (1303)
+.+++++||+-. |.......+.+.+.... .++..|+++++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCC
T ss_conf 724999424333-45431112210022135-6643000102111
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.78 E-value=0.016 Score=31.37 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999928899999940489
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.+.|+|||||||+||++.|...++
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.77 E-value=0.015 Score=31.67 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=23.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 799998279998688999870566588
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYDPV 1109 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~p~ 1109 (1303)
+.++|+|++|||||||+..|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.77 E-value=0.017 Score=31.22 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=25.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 799998279998688999870566588658
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~p~~G~ 1112 (1303)
+.|+|.|++||||||+.+.|...+......
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 889998999989899999999999876998
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.74 E-value=0.022 Score=30.44 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099789998799992889999994048
Q 000751 335 PAKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 335 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
|+|-.+.|+||+||||||..+.|...|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.74 E-value=0.022 Score=30.43 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.++++|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.71 E-value=0.017 Score=31.20 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+.|+|++||||||+++.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.52 E-value=0.029 Score=29.43 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999928899999940489
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.++++|+.|||||||++-|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=93.51 E-value=0.021 Score=30.57 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=24.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 389799998279998688999870566
Q 000751 1080 NGGQTVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1080 ~~Ge~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
|+|-++.|+||.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.027 Score=29.74 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 789998799992889999994048
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+.+.++|++||||||+.+.|...+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 749998999999999999999996
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.018 Score=31.14 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999982799986889998705665
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+.|.|+|++||||||+.++|...+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.47 E-value=0.049 Score=27.66 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9799998279998688999870566
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
+=+|||+|++|+|||||++.|++--
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8889999999999999999997787
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.45 E-value=0.02 Score=30.73 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99789998799992889999994048
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+..++.|+||+||||||+++.|...|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.021 Score=30.63 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997899987999928899999940489
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
++..++|-|+.||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.40 E-value=0.023 Score=30.19 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
++.|+|++||||||+.+.|..-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 798989999998999999999979
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.40 E-value=0.026 Score=29.85 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99982799986889998705665
Q 000751 1085 VAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1085 vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
|.|+|||||||+||.+.|...++
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.027 Score=29.65 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=13.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7899987999928899999940
Q 000751 338 KAVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
=.++++|++++|||||++.|.|
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 8999989999989999999968
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.37 E-value=0.019 Score=30.87 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
-+||+|++++|||||++.|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.34 E-value=0.018 Score=31.03 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999928899999940489
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.+.|+|||||||+||++.|...++
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.33 E-value=0.029 Score=29.41 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+++++|++|+|||||++.+.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.29 E-value=0.03 Score=29.34 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.26 E-value=0.021 Score=30.56 Aligned_cols=27 Identities=37% Similarity=0.398 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 897999982799986889998705665
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+...|.|+||.||||||+.+.|..-|.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 994899989999988999999999979
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.18 E-value=0.021 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99789998799992889999994048
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+-.++.|+||+||||||+++.|...|
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.11 E-value=0.031 Score=29.19 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=25.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 389799998279998688999870566588658
Q 000751 1080 NGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ 1112 (1303)
Q Consensus 1080 ~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~ 1112 (1303)
.++-.+-++||+||||||.+..+++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.11 E-value=0.17 Score=23.56 Aligned_cols=30 Identities=27% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEECCCEEEEECCCCCCHHHHH-HHHHCC
Q ss_conf 388509978999879999288999-999404
Q 000751 331 YLTVPAKKAVALVGRNGSGKSSII-PLMERF 360 (1303)
Q Consensus 331 ~l~i~~g~~~~ivG~sGsGKSTl~-~ll~~~ 360 (1303)
++.-.+...+++|||+|+||||.+ |+-.++
T Consensus 5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6799999899998999998899999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.02 E-value=0.022 Score=30.47 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9978999879999288999999404899
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
..-.++|+|+.|+|||||+.-+.+.+..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8328974389999899999999999975
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.01 E-value=0.032 Score=29.11 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
++||+|++||||||+++.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.98 E-value=0.044 Score=28.06 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.++|+|+.|||||||++.|++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.92 E-value=0.036 Score=28.73 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
+++++|.+++|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.71 E-value=0.031 Score=29.22 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.70 E-value=0.024 Score=30.14 Aligned_cols=21 Identities=48% Similarity=0.670 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999288999999404
Q 000751 340 VALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 340 ~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.70 E-value=0.038 Score=28.57 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9789998799992889999994048
Q 000751 337 KKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 337 g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.-+++|-|..||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.67 E-value=0.028 Score=29.58 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899987999928899999940489
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
..+.++|.+||||||+++.|.+.+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.67 E-value=0.036 Score=28.69 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.++|+|++|+|||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.67 E-value=0.034 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=23.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 50997899987999928899999940489
Q 000751 334 VPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 334 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
+..+.++.|.||+||||||+++.|..-|.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 46782899989999987999999999869
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.66 E-value=0.04 Score=28.39 Aligned_cols=20 Identities=45% Similarity=0.655 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
++||+|.+||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.66 E-value=0.03 Score=29.39 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99982799986889998705665
Q 000751 1085 VAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1085 vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
|.|+|||||||+||.+.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.66 E-value=0.19 Score=23.11 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCCHHH
Q ss_conf 99789998799992889999994048999858998995069989888742418890456555273999984199999999
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATLDQ 415 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~ 415 (1303)
...++++|||+|+||||.+--|...+. ..| .+++.+.=|.+-.. ..|+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------------~kV~lit~Dt~R~g-------------a~eQ 58 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------------------FKVGLVGADVYRPA-------------ALEQ 58 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT------------------CCEEEEECCCSSHH-------------HHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CCEEEEEEECCCCC-------------HHHH
T ss_conf 998999989999998999999999999-779------------------93699972023551-------------5678
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 99999981314779731024475235799989948999999987520499889983899999
Q 000751 416 IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGL 477 (1303)
Q Consensus 416 ~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDE~ts~l 477 (1303)
+..-++.. |...........+. .-.+=++..+...+.++++.| |++.
T Consensus 59 L~~~a~~l-----------~v~~~~~~~~~~~~--~~~~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 59 LQQLGQQI-----------GVPVYGEPGEKDVV--GIAKRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp HHHHHHHH-----------TCCEECCTTCCCHH--HHHHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred HHHHCCCC-----------CCCEEECCCCHHHH--HHHHHHHHHHHCCCCCEEEEE--CCCC
T ss_conf 98740146-----------84223024410244--789999987402677369985--3776
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.06 Score=26.98 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 85099789998799992889999994048
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
-+++|+.+.|.|++|||||||+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.61 E-value=0.11 Score=24.94 Aligned_cols=28 Identities=39% Similarity=0.589 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 899987999928899999940-----4899985
Q 000751 339 AVALVGRNGSGKSSIIPLMER-----FYDPTLG 366 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G 366 (1303)
+++++|.+|+|||||++-+.+ .|.|+.|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 899999899798999999970999876376133
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.60 E-value=0.035 Score=28.84 Aligned_cols=26 Identities=12% Similarity=0.379 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99789998799992889999994048
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+.-+++++|++|+|||||++-+.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.049 Score=27.67 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=24.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09978999879999288999999404899
Q 000751 335 PAKKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 335 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
++|.+++|.|+.||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.51 E-value=0.027 Score=29.73 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=11.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
.++++|++++|||||++.|.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899988999989999999858
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.061 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 86389799998279998688999870566
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
-+++|+.+-|.|++||||||+..-++.-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.46 E-value=0.024 Score=30.10 Aligned_cols=116 Identities=18% Similarity=0.167 Sum_probs=59.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHH
Q ss_conf 97999982799986889998705665886589999960799997876413688836786672128999971888999999
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAE 1161 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~~~~~e 1161 (1303)
-..+.|+||.||||||+.+.|..-| |-+.++.- +-+|+.+ .+...-....+++-..-+.. ..+..
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~-~~~~~ 72 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQI-VPQEI 72 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCC-CCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCCC-CCCHH
T ss_conf 7289998999999899999999985----99088535-------8999886---20101788998876400002-32036
Q ss_pred HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999999526999981999866423788888895899999999997039999998477
Q 000751 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219 (1303)
Q Consensus 1162 i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~p~ILlLDEa 1219 (1303)
........-...+. ..-+..+-++ .-....|...+.+.+.....+++||=+
T Consensus 73 ~~~~~~~~~~~~~~----~~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVK----ANKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHH----TTCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHC----CCCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 78999999886400----3777535404---313689999999861545543125798
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.43 E-value=0.045 Score=27.96 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879999288999999404899
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
.++|-||+||||||.+++|...|.-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997899987989999999999699
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.28 E-value=0.11 Score=24.94 Aligned_cols=33 Identities=33% Similarity=0.382 Sum_probs=24.5
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 8512113885099789998799992889999994
Q 000751 325 PILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 325 ~~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~ 358 (1303)
..++...+.+ .|.-+.+.|+||+||||++..+.
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 3178999999-99999998189999899999999
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.11 E-value=0.049 Score=27.70 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 789998799992889999994048
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+.+.++|++||||||+.+.|...+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.06 E-value=0.026 Score=29.78 Aligned_cols=39 Identities=13% Similarity=0.367 Sum_probs=28.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCC
Q ss_conf 7899987999928899999940489998589989950699898887424188904565
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPA 395 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 395 (1303)
-++||.|+|||||||+.+.+...+... | -....++||.+
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsf 43 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAF 43 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCC
T ss_conf 899998999780999999999997156-9------------------97699947778
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=92.06 E-value=0.048 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
+++++|.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.036 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 897999982799986889998705665
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+++.|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.05 E-value=0.07 Score=26.49 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=25.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 78999879999288999999404899985899899
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 372 (1303)
..+.+.||+||||||+++.|.+.+... -+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~~--~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQGN--VIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTC--CEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCC--EEEEEC
T ss_conf 799988979988999999999986515--489832
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.02 E-value=0.071 Score=26.45 Aligned_cols=28 Identities=39% Similarity=0.776 Sum_probs=20.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0997899987999928899999940489
Q 000751 335 PAKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 335 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
+++..++++||+|+||||.+--|...+.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9977999989999988999999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.96 E-value=0.059 Score=27.03 Aligned_cols=45 Identities=29% Similarity=0.391 Sum_probs=32.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEECCC
Q ss_conf 86389799998279998688999870566588--6589999960799
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYDPV--AGQVLLDGRDLKL 1122 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~--~G~I~idG~di~~ 1122 (1303)
.=++|..+.+.|.|||||||+.+.|...+... .-.+.+||-+++.
T Consensus 20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 58998699998999999899999999887774275089975367887
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.85 E-value=0.047 Score=27.85 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999827999868899987056658
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
.|+|-||+||||||+.++|..-|..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~ 29 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGF 29 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997899987989999999999699
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.85 E-value=0.23 Score=22.41 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
-+-+.||.|+|||++++.+.+.+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.83 E-value=0.04 Score=28.37 Aligned_cols=117 Identities=20% Similarity=0.155 Sum_probs=63.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 63897999982799986889998705665886589999960799997876413688836786672128999971888999
Q 000751 1079 VNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNAS 1158 (1303)
Q Consensus 1079 I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~~~ 1158 (1303)
++.+..+.|.||.||||||+.+.|..-|. -..++.-+ -+|..+. .. ......+.+.+.-+. ..+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g----~~~is~g~-------llr~~~~---~~-~~~~~~~~~~~~~~~-~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG----YTHLSTGD-------LLRAEVS---SG-SARGKMLSEIMEKGQ-LVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC----CEEEEHHH-------HHHHHHH---HT-CHHHHHHHHHHTTTC-CCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHC----CEEEECCH-------HHHHHHH---HH-HHHHHHHHHHHHHCC-CCC
T ss_conf 46782899989999987999999999869----84683347-------8999998---76-765145677776313-776
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999999999526999981999866423788888895899999999997039999998477
Q 000751 1159 EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219 (1303)
Q Consensus 1159 ~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~p~ILlLDEa 1219 (1303)
++-+...+... +...+...+-.+-+ .+..-..|--.+.+.+.....+..+|.+
T Consensus 69 ~~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 69 LETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHEEEEEHHHH-----HHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 22244102456-----64032235660243---1110157899999983775200003331
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.82 E-value=0.048 Score=27.75 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999982799986889998705665
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.-.|+|.|..||||||++++|.+.+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 61999889999888999999998707
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=91.82 E-value=0.053 Score=27.40 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
.+||+|++||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.81 E-value=0.053 Score=27.39 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
++.++|++|+|||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.037 Score=28.62 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78999879999288999999404
Q 000751 338 KAVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
=+++|.|+.|||||||...|...
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89983799878899999999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.73 E-value=0.07 Score=26.46 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9978999879999288999999404899
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
+|.++++-|..||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.71 E-value=0.14 Score=24.08 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
+++++|.+|+|||||++-+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~ 25 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFV 25 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999989929899999997
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.71 E-value=0.051 Score=27.58 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
++.|.||+||||||.++.|...|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=91.62 E-value=0.064 Score=26.77 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879999288999999404
Q 000751 340 VALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 340 ~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
+||+|+..+|||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.62 E-value=0.051 Score=27.56 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+.|+|++||||||+.+.|...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.57 E-value=0.05 Score=27.62 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999827999868899987056658
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
.|.+||.+||||||+++.|.+.+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~ 28 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNF 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899999999999999999974
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.49 E-value=0.076 Score=26.21 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997899987999928899999940489
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
+|.++++-|+.||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.49 E-value=0.061 Score=26.96 Aligned_cols=23 Identities=13% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+++++|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.47 E-value=0.09 Score=25.61 Aligned_cols=42 Identities=5% Similarity=0.216 Sum_probs=21.6
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 0499889983899999989899999999986199739998128741
Q 000751 462 LLNPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSL 507 (1303)
Q Consensus 462 ~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~ 507 (1303)
..+.+++++|-... . .+.+..+.+.+.+. ++-+++|-.....
T Consensus 133 ~~~~d~~l~~~~~~-~-~~~d~~l~~~l~~~--~k~~~~V~nK~D~ 174 (400)
T d1tq4a_ 133 FYEYDFFIIISATR-F-KKNDIDIAKAISMM--KKEFYFVRTKVDS 174 (400)
T ss_dssp GGGCSEEEEEESSC-C-CHHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred HHCCEEEEEECCCC-C-CHHHHHHHHHHHHC--CCCEEEEEECCCC
T ss_conf 32265999965888-8-78899999999976--9987999708632
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.47 E-value=0.068 Score=26.57 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
.+||+|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.46 E-value=0.055 Score=27.32 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999982799986889998705665
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+.+-++|++||||||+.+.|...+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9889988999988999999999949
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.46 E-value=0.054 Score=27.33 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+.|+|++||||||+++.|...|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=91.45 E-value=0.1 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999928899999940489
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
+++++|++|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.44 E-value=0.064 Score=26.80 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998279998688999870566
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
.++++|++|+||||+++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.35 E-value=0.066 Score=26.69 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999982799986889998705665886589999
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLD 1116 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~id 1116 (1303)
.+.|+|++||||||+.++|...+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=91.33 E-value=0.074 Score=26.27 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+.|+|+.||||||+++.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.25 E-value=0.09 Score=25.63 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=36.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCC
Q ss_conf 789998799992889999994048999858998995069989888742418890456
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEP 394 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 394 (1303)
+-+.++||+|||||-|++.|.++.+.. -+..|...++ ..|||..+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCH
T ss_conf 647998999988999999999873898--8986255114---------111110444
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.22 E-value=0.08 Score=26.02 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998279998688999870566
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
+|+++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.21 E-value=0.043 Score=28.11 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+.|.||+||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.17 E-value=0.27 Score=21.91 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=19.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 850997899987999928899999940489
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.-++-.++++|||+|+||||.+--|...+.
T Consensus 5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 5 EGKAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp CSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899997999989999998999999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.053 Score=27.43 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99998279998688999870566588658999996079999787641368883678667212899997188899999999
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVK 1163 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~~~~~ei~ 1163 (1303)
+|.|.||.||||||..+.|..-| |-..++- -+-+|.-+ .+....+...+.+.+.-+. ...|+.+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~-~v~d~~~~ 67 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGK-IVPVEITI 67 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTC-CCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCC-CCCCCHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697-21134036
Q ss_pred HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC--CCE-EEEECC
Q ss_conf 99999526999981999866423788888895899999999997039--999-998477
Q 000751 1164 EAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKN--API-LLLDEA 1219 (1303)
Q Consensus 1164 ~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~--p~I-LlLDEa 1219 (1303)
..+...- ........ .-+..+. .|... .+.|...+.+.+-.. +.+ +++|-+
T Consensus 68 ~~~~~~~-~~~~~~~~-~~~~~~~-~g~pr--~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 68 SLLKREM-DQTMAANA-QKNKFLI-DGFPR--NQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHHHH-HHHHHHCT-TCCEEEE-ESCCC--SHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHHHH-CCCCHHHH-CCCCEEE-CCCHH--HHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 7888764-12100011-2451110-11030--489999986442105543389962476
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.23 Score=22.39 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999982799986889998705-----66588658
Q 000751 1084 TVAVVGVSGSGKSTIISLIER-----FYDPVAGQ 1112 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r-----l~~p~~G~ 1112 (1303)
+++++|.+|+|||||++-+.+ .|.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 8999998997989999999709998763761331
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.96 E-value=0.045 Score=27.94 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 78999879999288999999404899
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
+++.|.|++||||||+++.|...+.-
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.92 E-value=0.087 Score=25.72 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998279998688999870566
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
+|+++|++|+|||||++.|.+--
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.90 E-value=0.081 Score=25.98 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
+++|+|..||||||.++.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.90 E-value=0.079 Score=26.07 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7899987999928899999940
Q 000751 338 KAVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
..++|+|++|+|||||++.+.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.81 E-value=0.087 Score=25.75 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
+|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=90.81 E-value=0.07 Score=26.49 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879999288999999404899
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
+++|-||+||||+|+.+.|..-|.-
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.79 E-value=0.1 Score=25.17 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 85099789998799992889999994
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~ 358 (1303)
=+++|+.+.|.|++|||||||+.-+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98699699998389998899999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.78 E-value=0.097 Score=25.38 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=25.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38979999827999868899987056658
Q 000751 1080 NGGQTVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1080 ~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
++|..|+|.|+-||||||++++|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.78 E-value=0.073 Score=26.34 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.75 E-value=0.071 Score=26.41 Aligned_cols=36 Identities=17% Similarity=0.393 Sum_probs=25.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCE
Q ss_conf 99789998799992889999994048999858998995
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGE 373 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 373 (1303)
|+.-+.++||+|||||.|++.+.+.+.. --+.+++.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s 83 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEAT 83 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCCC
T ss_conf 9866999899998888999998621322--10003443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.0039 Score=36.26 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=27.8
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 512113885099789998799992889999994048
Q 000751 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 326 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+++.++.+.+| ++.|+|++||||||++..|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.74 E-value=0.2 Score=22.94 Aligned_cols=28 Identities=43% Similarity=0.700 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 899987999928899999940-----4899985
Q 000751 339 AVALVGRNGSGKSSIIPLMER-----FYDPTLG 366 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G 366 (1303)
++.++|.+|+|||||++-+.. .|.|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 999999899789999999973989876377310
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.73 E-value=0.047 Score=27.86 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998279998688999870566
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
++.|.||.||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.67 E-value=0.057 Score=27.18 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=16.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999982799986889998705665
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.-+.++||+|+|||.|+++|.+.+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 6699989999888899999862132
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.65 E-value=0.063 Score=26.81 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
++.|.|+.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999998999999999879
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.64 E-value=0.1 Score=25.18 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8979999827999868899987056658
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
+|..|+|-|+-||||||+++.|...+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~ 28 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ 28 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9878999899888799999999999996
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.62 E-value=0.066 Score=26.65 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38979999827999868899987056658
Q 000751 1080 NGGQTVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1080 ~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
++-..+++|||+|+||||.+.=|...+.-
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~ 35 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQ 35 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99979999899999989999999999997
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.60 E-value=0.13 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 86389799998279998688999870
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIE 1103 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~ 1103 (1303)
-+++|+.+-|.|++||||||+..-+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 98699699998389998899999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.54 E-value=0.058 Score=27.09 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 79999827999868899987056658
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
+.+.|.|++||||||+++.|...+.-
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.51 E-value=0.089 Score=25.66 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799992889999994048
Q 000751 340 VALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 340 ~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+.++|++||||||+.++|...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.0049 Score=35.45 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=27.4
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 011015886389799998279998688999870566
Q 000751 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1071 vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
..++.++.+.+| .+.|+|++||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 870279974998-08998899998799999999996
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.46 E-value=0.094 Score=25.48 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=23.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8999879999288999999404899985
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDPTLG 366 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 366 (1303)
.+.+.||+|+||||+++++...+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.42 E-value=0.068 Score=26.56 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+|.|+|+.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999987999999999879
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.40 E-value=0.11 Score=24.81 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 78999879999288999999404899
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
..+.+.||+|+||||+++++.+.+..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.38 E-value=0.23 Score=22.52 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 899987999928899999940-----48999858
Q 000751 339 AVALVGRNGSGKSSIIPLMER-----FYDPTLGE 367 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G~ 367 (1303)
++.++|.+|+|||||++-+.. .|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999998995889999999729998654775343
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.32 E-value=0.11 Score=25.06 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999827999868899987056658865899999
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDG 1117 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG 1117 (1303)
-+-++||.||||||+++.|.+.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf 9998897998899999999998651--5489832
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.26 E-value=0.11 Score=24.98 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.16 E-value=0.05 Score=27.59 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCC
Q ss_conf 9999827999868899987056658865899999607999978764136888367866
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPII 1141 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~L 1141 (1303)
.|||+|+|||||||+.+.|...+... |. ..++++||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-------~v------------~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-------GV------------KAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-------TC------------CEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CC------------CEEEEECCCCC
T ss_conf 99998999780999999999997156-------99------------76999477787
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.056 Score=27.25 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+|||+|+.|+|||||+..|.+.+.
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 897438999989999999999997
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.15 E-value=0.065 Score=26.73 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.12 E-value=0.096 Score=25.40 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
++.++|++||||||+.++|...+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.11 E-value=0.33 Score=21.24 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=21.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 863897999982799986889998705665
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.-++...+++|||+|+||||.+.-|...+.
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999998999989999988999999999999
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.10 E-value=0.11 Score=24.97 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=19.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 997899987999928899999940
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+.-+++++|.+|||||||++-+.+
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 857999999999898999999966
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.1 Score=25.24 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHCCCCEEEEEECCCHHHHHCCEEEEEECCEEEE
Q ss_conf 95899999999997039999998477899998989999-9999984419929999833901674059899996989988
Q 000751 1194 TPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVV-QEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVE 1271 (1303)
Q Consensus 1194 SGGQkQRiaLARAll~~p~ILlLDEaTSaLD~~te~~I-~~~l~~~~~~~~TvI~IaHrl~ti~~aD~Iivl~~G~Ive 1271 (1303)
...+......+...++++++++++=.-..-+...+... .+.+.... .++.+|+|.............--...-.+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~ 141 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLGMSEVNGHALIR 141 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 52024789999999874133201102565420345554445554201-4101020465444335588798727996799
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.1 Score=25.25 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999928899999940489
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.+.++||+||||||..+.|...|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899987999998999999999869
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.03 E-value=0.12 Score=24.66 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8979999827999868899987056658
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
+|..|+|-|.-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.02 E-value=0.23 Score=22.39 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHH-C----CCCCCCCEE
Q ss_conf 89998799992889999994-0----489998589
Q 000751 339 AVALVGRNGSGKSSIIPLME-R----FYDPTLGEV 368 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~-~----~~~~~~G~i 368 (1303)
+++++|.+|+|||||++-+. + .|.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.13 Score=24.42 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=23.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 850997899987999928899999940
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
=+++|+.+.|.|++|||||+++.-+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=89.94 E-value=0.12 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97899987999928899999940489
Q 000751 337 KKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 337 g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.=.+.|+|+.||||||+.+.|..-|.
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 21699988999987999999999979
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.93 E-value=0.12 Score=24.63 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+.|.||+||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.89 E-value=0.082 Score=25.95 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=36.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 99998279998688999870566588658999996079999787641368883678667212899997188899999999
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAEVK 1163 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~~~~~ei~ 1163 (1303)
++.|+||.||||||+.+.|..-|.. ..++.- +-+|.... ...-....+++-+.-+.. ..++.+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~----~~i~~~-------~llr~~~~----~~~~~~~~i~~~~~~g~~-~~d~~v~ 65 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGI----PQISTG-------DMLRAAVK----SGSELGKQAKDIMDAGKL-VTDELVI 65 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC----CEEEHH-------HHHHHHHH----HTCTTTGGGHHHHHHTCC-CCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC----CEECHH-------HHHHHHHC----CCCHHHHHHHHHHHCCCC-CCCHHHH
T ss_conf 8999879999989999999998699----555101-------47677550----398589999999976998-7116399
Q ss_pred HHH
Q ss_conf 999
Q 000751 1164 EAA 1166 (1303)
Q Consensus 1164 ~al 1166 (1303)
..+
T Consensus 66 ~~~ 68 (179)
T d1e4va1 66 ALV 68 (179)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.86 E-value=0.17 Score=23.52 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 512113885099789998799992889999994
Q 000751 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 326 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~ 358 (1303)
.++...+ --.|.-+.++|+||+||||++..+.
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 2899999-9999999998089999899999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.84 E-value=0.12 Score=24.67 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=28.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCC
Q ss_conf 99998279998688999870566588658999996079999787641368883678667212
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTT 1145 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gT 1145 (1303)
.|||.|+.||||||+...|...+.-..| ....+.+++.|.+-.+..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~----------------~~~~v~~iS~DdfY~t~~ 74 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYG----------------GEKSIGYASIDDFYLTHE 74 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHG----------------GGSCEEEEEGGGGBCCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHC----------------CCCCEEEECCCCCCCCHH
T ss_conf 9983799878899999999999998727----------------786067635677778889
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.83 E-value=0.34 Score=21.08 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=30.3
Q ss_pred CCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHC-CCCEEEEEECCC
Q ss_conf 0499889983899999-9898999999999861-997399981287
Q 000751 462 LLNPSILLLDEVTGGL-DFEAERAVQEALDLLM-LGRSTIIIARRL 505 (1303)
Q Consensus 462 ~~~~~ililDE~ts~l-D~~~~~~~~~~l~~~~-~~~t~i~i~h~~ 505 (1303)
++..+++++||.-.-. +...+..+...+.... .++.+|+.+...
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 7621301011265505865778899999998763166389954875
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=89.80 E-value=0.12 Score=24.69 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
+|.++|++|+|||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=89.76 E-value=0.083 Score=25.92 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999827999868899987056658
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
.|+|-||.||||||+.+.|..-|..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8997799988989999999999699
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.75 E-value=0.12 Score=24.56 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.70 E-value=0.12 Score=24.59 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
+++|||.+|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999679
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.69 E-value=0.13 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=22.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 85099789998799992889999994
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~ 358 (1303)
=+++|+.+.|.|++||||||++.-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.69 E-value=0.18 Score=23.37 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+++++|+.|+|||||++.|.+-..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.65 E-value=0.11 Score=24.87 Aligned_cols=123 Identities=16% Similarity=0.246 Sum_probs=58.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHCCEEEEECCCCC-CCHHHHHHHHCCCCCCHHH
Q ss_conf 899987999928899999940489--9985899899506998988874241889045655-5273999984199999999
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD--PTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPAL-LSLSIRDNIAYGRDATLDQ 415 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l-~~~ti~~ni~~~~~~~~~~ 415 (1303)
-++|+|+.|||||||+..|+-.-. ...|++. +|..+.+..+++..+.++.-..-..+ +.+ .+=|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~-~~~n~---------- 75 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKD-HRINI---------- 75 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETT-EEEEE----------
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCC-EEEEE----------
T ss_conf 999995898998999999999648534023365-184698565888751886001123431598-38999----------
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999981314779731024475235799989948999999987520499889983899999989899999999986199
Q 000751 416 IEEAAKIAHAHTFISSLEKGYETQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQEALDLLMLG 495 (1303)
Q Consensus 416 ~~~~~~~~~~~~~i~~l~~g~~t~ig~~g~~LSgGqkqrialARal~~~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~ 495 (1303)
.|| .+-..+++--..-+.. .|..|++.| +..++.+.|++.+..+-+ .+
T Consensus 76 --------------------iDt---PG~~dF~~e~~~~l~~-----~D~avlVvd-a~~Gv~~~T~~~w~~a~~---~~ 123 (276)
T d2bv3a2 76 --------------------IDA---PGHVDFTIEVERSMRV-----LDGAIVVFD-SSQGVEPQSETVWRQAEK---YK 123 (276)
T ss_dssp --------------------ECC---CSSSSCSTTHHHHHHH-----CCEEEEEEE-TTTSSCHHHHHHHHHHHT---TT
T ss_pred --------------------ECC---CCHHHHHHHHHHHHHH-----HHHEEEECC-CCCCCCHHHHHHHHHHHH---CC
T ss_conf --------------------527---8602269999999996-----300577322-567744669999999998---59
Q ss_pred CEEEEEECCC
Q ss_conf 7399981287
Q 000751 496 RSTIIIARRL 505 (1303)
Q Consensus 496 ~t~i~i~h~~ 505 (1303)
.-+|+.-+++
T Consensus 124 lP~i~fINKm 133 (276)
T d2bv3a2 124 VPRIAFANKM 133 (276)
T ss_dssp CCEEEEEECT
T ss_pred CCEEEEEECC
T ss_conf 9979998644
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.51 E-value=0.25 Score=22.13 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHH-CC----CCCCCC
Q ss_conf 89998799992889999994-04----899985
Q 000751 339 AVALVGRNGSGKSSIIPLME-RF----YDPTLG 366 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~-~~----~~~~~G 366 (1303)
+++++|.+|+|||||++-+. +. +.|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999198999999972999865465301
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.3 Score=21.57 Aligned_cols=38 Identities=24% Similarity=0.540 Sum_probs=26.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCEEC
Q ss_conf 7999982799986889998705-----66588658-----99999607
Q 000751 1083 QTVAVVGVSGSGKSTIISLIER-----FYDPVAGQ-----VLLDGRDL 1120 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~r-----l~~p~~G~-----I~idG~di 1120 (1303)
-+|+++|.+|+|||||++.+.. .|.|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.13 Score=24.31 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
.|||+|..||||||..+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.41 E-value=0.1 Score=25.21 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=27.9
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 138850997899987999928899999940489
Q 000751 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 330 i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.=+.+-+|++.+|+|++|+|||||+..+.+...
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 125645787556867999887899999999775
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.37 E-value=0.14 Score=24.21 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99789998799992889999994048
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+..+.|.|++|+|||||++-+....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.31 E-value=0.13 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
+++|+|+..+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.30 E-value=0.18 Score=23.21 Aligned_cols=34 Identities=29% Similarity=0.253 Sum_probs=27.0
Q ss_pred CEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 20110158863897999982799986889998705
Q 000751 1070 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1070 ~vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
..++.--+.+ .|.-+.|.|+||+||||+...|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.27 E-value=0.027 Score=29.76 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.++++|++++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.18 E-value=0.13 Score=24.49 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.17 E-value=0.14 Score=24.06 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.++++|...||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.14 E-value=0.18 Score=23.32 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=24.4
Q ss_pred CCCCCEEE-EEECCCEEEEECCCCCCHHHHHHH
Q ss_conf 85121138-850997899987999928899999
Q 000751 325 PILSGFYL-TVPAKKAVALVGRNGSGKSSIIPL 356 (1303)
Q Consensus 325 ~~l~~i~l-~i~~g~~~~ivG~sGsGKSTl~~l 356 (1303)
+-|+++-- =+++|+.+.|.|++|+|||+|+.-
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 779885568996983999994799999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=89.09 E-value=0.14 Score=24.07 Aligned_cols=21 Identities=19% Similarity=0.540 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|++|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.08 E-value=0.14 Score=24.01 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
+++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.03 E-value=0.1 Score=25.24 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89799998279998688999870566
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
+.-++++||++|+|||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.02 E-value=0.085 Score=25.82 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999827999868899987056
Q 000751 1085 VAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1085 vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
|||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.98 E-value=0.13 Score=24.28 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78999879999288999999404
Q 000751 338 KAVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.+++|+|+-||||||.++.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.95 E-value=0.16 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 50997899987999928899999940
Q 000751 334 VPAKKAVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 334 i~~g~~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++|+.+.|.|++|+||||++.-+.-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 62885999991799998999999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.93 E-value=0.4 Score=20.61 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=42.0
Q ss_pred HHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHH--CCEEEEEECCEEEEECCHHH
Q ss_conf 97039999998477899-998989999999998441992999983390-16740--59899996989988349578
Q 000751 1206 VVLKNAPILLLDEASSS-IESESSRVVQEALDTLIMGNKTTILIAHRA-AMMRH--VDNIVVLNGGRIVEEGTHDS 1277 (1303)
Q Consensus 1206 All~~p~ILlLDEaTSa-LD~~te~~I~~~l~~~~~~~~TvI~IaHrl-~ti~~--aD~Iivl~~G~Ive~Gt~~e 1277 (1303)
..++..+++++|+.-.- -+..++..+...+......++.+|+.+.+. +.+.. .|-.=.+..|-+++-..+++
T Consensus 93 ~~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~ 168 (213)
T d1l8qa2 93 NMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNK 168 (213)
T ss_dssp HHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECCCCH
T ss_conf 9876213010112655058657788999999987631663899548751001343267888861856899788827
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.91 E-value=0.22 Score=22.65 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=17.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 85099789998799992889999994
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~ 358 (1303)
-.-.|.-+.|.|+||+||||++-.+.
T Consensus 11 v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 11 VDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99999999998089999999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.90 E-value=0.16 Score=23.77 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=23.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 863897999982799986889998705
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
-|++|+.+-|.|++|||||++..-+..
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.88 E-value=0.16 Score=23.78 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CC
Q ss_conf 899987999928899999940489-99
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD-PT 364 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~-~~ 364 (1303)
.+++||...||||||++.|+|.-- |+
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 599981898979999999968997887
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.87 E-value=0.14 Score=24.24 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=31.0
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf 88509978999879999288999999404899985-89989950
Q 000751 332 LTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-EVLLDGEN 374 (1303)
Q Consensus 332 l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~ 374 (1303)
==+++|.++.+.|++|||||||+--+.....-..| -+++|...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99667358998057774789999999999870898799986544
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.86 E-value=0.28 Score=21.73 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.83 E-value=0.21 Score=22.76 Aligned_cols=155 Identities=16% Similarity=0.098 Sum_probs=70.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHH-HHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCC
Q ss_conf 863897999982799986889998-7056658865899999607999978764136888367866721289999718889
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISL-IERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN 1156 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~l-L~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~ 1156 (1303)
-+++|+.+-|.|++|+|||++..- +..........+. |+.-|.. ...++....-..
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~-------------------~~s~e~~--~~~~~~~~~~~~-- 78 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV-------------------FVTFEET--PQDIIKNARSFG-- 78 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEE-------------------EEESSSC--HHHHHHHHGGGT--
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCC-------------------CCCCCCC--HHHHHHHHHHCC--
T ss_conf 99698399999479999999999999999985688742-------------------0126679--999999999849--
Q ss_pred CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHC--CCCEEEEECCCCCCCH----H-HH
Q ss_conf 9999999999995269999819998664237888888958-9999999999703--9999998477899998----9-89
Q 000751 1157 ASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPG-QKQRIAIARVVLK--NAPILLLDEASSSIES----E-SS 1228 (1303)
Q Consensus 1157 ~~~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGG-QkQRiaLARAll~--~p~ILlLDEaTSaLD~----~-te 1228 (1303)
...++..+..+.. .. ......+.-...+.. ....+.-.+..++ +|+++++|--++-.+. . ..
T Consensus 79 ~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~ 148 (242)
T d1tf7a1 79 WDLAKLVDEGKLF----IL------DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVR 148 (242)
T ss_dssp CCHHHHHHTTSEE----EE------ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHH
T ss_pred CCHHHHHHHCCHH----HH------HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9848988714302----44------4210335444430245899999999998863122200207889987605726789
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCHH---------H-HHCCEEEEEE
Q ss_conf 99999999844199299998339016---------7-4059899996
Q 000751 1229 RVVQEALDTLIMGNKTTILIAHRAAM---------M-RHVDNIVVLN 1265 (1303)
Q Consensus 1229 ~~I~~~l~~~~~~~~TvI~IaHrl~t---------i-~~aD~Iivl~ 1265 (1303)
+.+...++.....++|+++++|.... . ..+|.++.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 149 RELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999998639716884210255422246762335362999988
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.80 E-value=0.11 Score=25.08 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99789998799992889999994048
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
..-.++|+|+.|+|||||+.-+...+
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 81598611799888999999999987
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.76 E-value=0.15 Score=23.80 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
++.|.||.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999997999999999989
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.63 E-value=0.3 Score=21.54 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.61 E-value=0.17 Score=23.43 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.+.+.|+.||||||+.+.|...|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.57 E-value=0.2 Score=22.89 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.51 E-value=0.2 Score=22.97 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 86389799998279998688999870
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIE 1103 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~ 1103 (1303)
=+++|+.+-|.|++||||||+..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.17 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.44 E-value=0.24 Score=22.25 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9978999879999288999999404899985
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 366 (1303)
+...+.|.||+|+||||+++.+...+....+
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 8881688898999899999999999754468
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.42 E-value=0.32 Score=21.29 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=18.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7899987999928899999940
Q 000751 338 KAVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
=+++++|.+|+|||||++-+.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.42 E-value=0.22 Score=22.63 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=24.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 979999827999868899987056658865
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFYDPVAG 1111 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G 1111 (1303)
...+.|.||.|+||||+++.+.+.+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.27 E-value=0.21 Score=22.76 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 863897999982799986889998705
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
-+++|+.+-|.|++|+|||++..-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=88.27 E-value=0.1 Score=25.15 Aligned_cols=27 Identities=33% Similarity=0.552 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 897999982799986889998705665
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
....+++|||+|+||||.+.=|...+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.22 E-value=0.33 Score=21.20 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf 999982799986889998705-----665886589
Q 000751 1084 TVAVVGVSGSGKSTIISLIER-----FYDPVAGQV 1113 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r-----l~~p~~G~I 1113 (1303)
++.++|.+|+|||||++-+.. -|.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999999979999999997399885457664520
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.12 E-value=0.16 Score=23.64 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.06 E-value=0.17 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999827999868899987056658
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
.+-+.||+|+||||+++++.+.+..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999879999888999999999875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.02 E-value=0.17 Score=23.54 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.99 E-value=0.39 Score=20.67 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=25.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 89998799992889999994048999858998
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEVLL 370 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 370 (1303)
++.|=|+-|+||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.99 E-value=0.31 Score=21.46 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=23.9
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0110158863897999982799986889998705
Q 000751 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1071 vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
.++.--+ --.|.-+.|+|+||+||||++..|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 2899999-99999999980899998999999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.98 E-value=0.19 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879999288999999404899
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
+++|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.97 E-value=0.2 Score=23.00 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=31.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCE
Q ss_conf 86389799998279998688999870566588658-999996
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ-VLLDGR 1118 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~-I~idG~ 1118 (1303)
=+++|..+-|.|++||||||+...+.....-..|. +++|.-
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 966735899805777478999999999987089879998654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.96 E-value=0.35 Score=20.98 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.95 E-value=0.2 Score=22.94 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89799998279998688999870566
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
.+..+.|+|++|+|||||++.++.-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=87.93 E-value=0.16 Score=23.71 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999879999288999999404899
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
.+.+.||+|+||||+++++.+.+..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 3898897998788899999998498
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.89 E-value=0.16 Score=23.72 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999982799986889998705665886
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVA 1110 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~ 1110 (1303)
.+-+.||.|+||||+++++...+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 489879999738899999985038885
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.81 E-value=0.21 Score=22.81 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999827999868899987056
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
..|+|+|+.|+|||||++.|.+-
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999998989999999809
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.81 E-value=0.18 Score=23.22 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999928899999940489
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
.+.+.||+|+||||+++.+...+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.75 E-value=0.18 Score=23.32 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
+++++|.+|+|||||++-+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989959899999998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.68 E-value=0.38 Score=20.76 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.64 E-value=0.14 Score=24.01 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=82.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHCCEEEECCCC-CCCCCCHHHHH--HCCCCCCC
Q ss_conf 99998279998688999870566--588658999996079999787641368883678-66721289999--71888999
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFY--DPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEP-IIFSTTIRENI--IYARHNAS 1158 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~--~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p-~Lf~gTIreNI--~~g~~~~~ 1158 (1303)
.+||+|+.|+|||||+..|+..- ....|++. +|..+.++......+.+++-..-. +.+.+ .+-|+ ++|..+..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE---ECCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999526999981999866423788888895899999999997039999998---4778999989899999999
Q 000751 1159 EAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLL---DEASSSIESESSRVVQEAL 1235 (1303)
Q Consensus 1159 ~~ei~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~p~ILlL---DEaTSaLD~~te~~I~~~l 1235 (1303)
.+...+++.+.. -=-.|. .-.....+-++-+-.|+.. +-|.++++ |.+ + |.. ...+.+
T Consensus 82 -~e~~~al~~~D~----------avlvvd-a~~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~--~-~~~---~~l~~~ 142 (267)
T d2dy1a2 82 -GEIRGALEAADA----------ALVAVS-AEAGVQVGTERAWTVAERL-GLPRMVVVTKLDKG--G-DYY---ALLEDL 142 (267)
T ss_dssp -HHHHHHHHHCSE----------EEEEEE-TTTCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC--C-CHH---HHHHHH
T ss_pred -HHHHHHHCCCCC----------EEEEEE-CCCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC--C-CCH---HHHHHH
T ss_conf -556543124673----------389842-3577421157887765540-44310133320222--2-101---234468
Q ss_pred HHHHCCCCEEEEEECCC----HHHH--HCCEEEEEECCEEEEECCHHHHH
Q ss_conf 98441992999983390----1674--05989999698998834957896
Q 000751 1236 DTLIMGNKTTILIAHRA----AMMR--HVDNIVVLNGGRIVEEGTHDSLL 1279 (1303)
Q Consensus 1236 ~~~~~~~~TvI~IaHrl----~ti~--~aD~Iivl~~G~Ive~Gt~~eLl 1279 (1303)
++.. +...-+.+-... ..+. ...+.+..++|.-.+.--|.++.
T Consensus 143 ~~~l-g~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~ 191 (267)
T d2dy1a2 143 RSTL-GPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEER 191 (267)
T ss_dssp HHHH-CSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGH
T ss_pred HHHH-CCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHH
T ss_conf 8874-658676860025883268762476548996189874540777789
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.64 E-value=0.21 Score=22.79 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89998799992889999994048
Q 000751 339 AVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+++++|.+|+|||||++-+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.63 E-value=0.17 Score=23.56 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=53.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCHHH
Q ss_conf 97999982799986889998705665886589999960799997876413688836786672128999971888999999
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHNASEAE 1161 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~~~~~e 1161 (1303)
.=++.|.|+.||||||+.+.|..-|. -..++-- +-+|..+ ++..-+..-+.+.+..+.. ..++.
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~g----~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~~~-v~~~~ 69 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHFE----LKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQGKL-IPDDV 69 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHBC----CEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTTCC-CCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC----CEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHHHH-CCCHH
T ss_conf 21699988999987999999999979----8687189-------9999998----7401566899987636641-33034
Q ss_pred HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999999526999981999866423788888895899999999997039999998477
Q 000751 1162 VKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEA 1219 (1303)
Q Consensus 1162 i~~al~~a~l~~~I~~lp~Gldt~vge~G~~LSGGQkQRiaLARAll~~p~ILlLDEa 1219 (1303)
+....+.. + ... +.....+ .|.--+ ..|.-.+.+ .+.-..++.||-+
T Consensus 70 ~~~l~~~~-~----~~~-~~~~~il--dGfPr~--~~q~~~l~~-~~~~~~vi~L~v~ 116 (189)
T d2ak3a1 70 MTRLVLHE-L----KNL-TQYNWLL--DGFPRT--LPQAEALDR-AYQIDTVINLNVP 116 (189)
T ss_dssp HHHHHHHH-H----HHH-TTSCEEE--ESCCCS--HHHHHHHHT-TCCCCEEEEEECC
T ss_pred HHHHHHHH-H----HHH-HHCCCCC--CCCCCH--HHHHHHHHH-CCCCEEEEEEECC
T ss_conf 45445554-4----212-1058424--452100--067887631-5753299997244
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.59 E-value=0.18 Score=23.29 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.59 E-value=0.3 Score=21.54 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=87.52 E-value=0.19 Score=23.16 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|++|+|||||++-+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.45 E-value=0.21 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.+||||...+|||||.+.|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.41 E-value=0.18 Score=23.36 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=22.1
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 158863897999982799986889998705665
Q 000751 1075 FSLKVNGGQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1075 isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.=+.|-+||+.+|.|++|+|||||+..+.+-..
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 125645787556867999887899999999775
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.28 E-value=0.27 Score=21.89 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899987999928899999940489
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
++.++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.23 E-value=0.42 Score=20.43 Aligned_cols=29 Identities=34% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 899987999928899999940-----48999858
Q 000751 339 AVALVGRNGSGKSSIIPLMER-----FYDPTLGE 367 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G~ 367 (1303)
++.++|.+|+|||||++-+.+ .+.|+.|.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~ 39 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999998995989999999709888545763120
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.23 E-value=0.49 Score=19.86 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC-C----CCCCCCEE
Q ss_conf 999982799986889998705-6----65886589
Q 000751 1084 TVAVVGVSGSGKSTIISLIER-F----YDPVAGQV 1113 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r-l----~~p~~G~I 1113 (1303)
++.++|.+|+|||||++-+.+ - |.++-|..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~ 42 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 42 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCC----CCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 99999999979999999998497887656632321
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.20 E-value=0.16 Score=23.65 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=17.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9789998799992889999994048
Q 000751 337 KKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 337 g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
...+.++||+|+||||.+--|...+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.11 E-value=0.28 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 978999879999288999999404899
Q 000751 337 KKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 337 g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
..-+.+.||+|||||++++.+.+....
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~~~~ 64 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANETGA 64 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 864687669988830899999987488
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.10 E-value=0.17 Score=23.39 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
++||+|+-|+|||||+..|.+.
T Consensus 53 ~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9861179988899999999998
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.08 E-value=0.48 Score=19.93 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999982799986889998705-----6658865
Q 000751 1084 TVAVVGVSGSGKSTIISLIER-----FYDPVAG 1111 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r-----l~~p~~G 1111 (1303)
++.++|.+|+|||||++-+.. .|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 999999899789999999973989876377310
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=87.06 E-value=0.18 Score=23.28 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=17.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9789998799992889999994
Q 000751 337 KKAVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 337 g~~~~ivG~sGsGKSTl~~ll~ 358 (1303)
.=+++++|++|+|||||++-+.
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
T ss_conf 6899999999998899998873
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.23 Score=22.44 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=24.5
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 512113885099789998799992889999994048
Q 000751 326 ILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 326 ~l~~i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
.|+.++ .|=..++|+|+.++|||||++.|.|..
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.04 E-value=0.21 Score=22.70 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 7999982799986889998705665886589999
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLD 1116 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~id 1116 (1303)
..|||+|.-||||||..+.|..-+ |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf 899997999988999999999868----985980
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.02 E-value=0.3 Score=21.58 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=17.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 509978999879999288999999404899
Q 000751 334 VPAKKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 334 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
.++|.++++.|+=||||||+++.+.+-+..
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 799829999668776588999998764223
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=87.00 E-value=0.2 Score=22.94 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998279998688999870566
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
.|||+|+..+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.96 E-value=0.24 Score=22.26 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999827999868899987056658
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
.|+|-|.-||||||+++.|...+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~ 26 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999899878999999999999987
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.93 E-value=0.21 Score=22.74 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.87 E-value=0.22 Score=22.66 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799992889999994048
Q 000751 340 VALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 340 ~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+.+.||+|+||||+++.+.+.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.86 E-value=0.52 Score=19.71 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHH-CC----CCCCCC
Q ss_conf 99998279998688999870-56----658865
Q 000751 1084 TVAVVGVSGSGKSTIISLIE-RF----YDPVAG 1111 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~-rl----~~p~~G 1111 (1303)
+++++|..|+|||||++-+. +- |+|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999999198999999972999865465301
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=86.82 E-value=0.52 Score=19.70 Aligned_cols=29 Identities=45% Similarity=0.806 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 89799998279998688999870566588
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFYDPV 1109 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~ 1109 (1303)
++..+++|||+|+||||.+.=|...+.-.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~ 33 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 33 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 97799998999998899999999999977
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.75 E-value=0.1 Score=25.15 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97999982799986889998705665
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.-+|+|+|++++|||||++.|.+...
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 97899988999989999999858985
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.74 E-value=0.21 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.73 E-value=0.25 Score=22.20 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=27.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8638979999827999868899987056658
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYDP 1108 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p 1108 (1303)
..+||..+.+.|+-||||||+++.+.+-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.72 E-value=0.2 Score=23.00 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.+-|.||+|+||||+++++.+.+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 699978999748799999999987
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.72 E-value=0.29 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799992889999994048
Q 000751 340 VALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 340 ~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+|++|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=86.69 E-value=0.23 Score=22.46 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=21.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 38979999827999868899987056
Q 000751 1080 NGGQTVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1080 ~~Ge~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
++.=++.+||..|||||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.66 E-value=0.22 Score=22.63 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.64 E-value=0.22 Score=22.54 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
+++++|.+|+|||||++-+.
T Consensus 7 KivviG~~~vGKTsli~~~~ 26 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYT 26 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999979999999997
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.61 E-value=0.47 Score=20.01 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC-----CCCCCCE
Q ss_conf 9999827999868899987056-----6588658
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF-----YDPVAGQ 1112 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl-----~~p~~G~ 1112 (1303)
++.++|.+|+|||||++-+.+- +.|+-|.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 38 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED 38 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999998993999999999719998766886113
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.60 E-value=0.49 Score=19.89 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78999879999288999999404
Q 000751 338 KAVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
=+++|||-..+|||||.+.|.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=86.47 E-value=0.53 Score=19.59 Aligned_cols=36 Identities=36% Similarity=0.630 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHH-----CCCCCCCCE-----EEECCEE
Q ss_conf 99998279998688999870-----566588658-----9999960
Q 000751 1084 TVAVVGVSGSGKSTIISLIE-----RFYDPVAGQ-----VLLDGRD 1119 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~-----rl~~p~~G~-----I~idG~d 1119 (1303)
++.++|.+|+|||||++-+. ..|.|+.|. +.+||.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~ 51 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE 51 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999998995889999999729998654775343101111345433
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.45 E-value=0.23 Score=22.47 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=26.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8509978999879999288999999404899
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
.++++..+.+.||+|+|||++++.+.+++..
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~ 180 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGG 180 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 8997676999899998889999999998599
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.39 E-value=0.54 Score=19.53 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=30.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 998899838999999898999999999861997399981287410
Q 000751 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508 (1303)
Q Consensus 464 ~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~ 508 (1303)
+.+++++||+-. |+......+.+.+.+.......|++|++.+-+
T Consensus 115 ~~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 115 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 987999978110-89999999999985689886999973885636
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.36 E-value=0.26 Score=22.03 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998279998688999870566
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
++.|.||.||||||+.+.|...|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.28 E-value=0.45 Score=20.21 Aligned_cols=22 Identities=18% Similarity=0.526 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHH-HCC
Q ss_conf 8999879999288999999-404
Q 000751 339 AVALVGRNGSGKSSIIPLM-ERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll-~~~ 360 (1303)
++.++|.+|+|||+|++-+ .+.
T Consensus 4 KivliG~~~vGKTsli~r~~~~~ 26 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDC 26 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999959899999997299
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.28 E-value=0.35 Score=21.03 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf 78999879999288999999-404899985
Q 000751 338 KAVALVGRNGSGKSSIIPLM-ERFYDPTLG 366 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll-~~~~~~~~G 366 (1303)
-++.++|.+|+|||||++-+ .+.+.||-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.11 E-value=0.22 Score=22.56 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998279998688999870566
Q 000751 1085 VAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1085 vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
+-+.||+|+||||+++++.+.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.99 E-value=0.56 Score=19.42 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+|.++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899098999999984
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.99 E-value=0.28 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
++.++|.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=85.97 E-value=0.4 Score=20.58 Aligned_cols=33 Identities=30% Similarity=0.242 Sum_probs=24.3
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0110158863897999982799986889998705
Q 000751 1071 VLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1071 vL~~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
.++. ++---.|.-+.|+|+||+||||+...|..
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 4889-99999999999980899999999999998
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=85.95 E-value=0.29 Score=21.70 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998279998688999870566
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
.|||+|+..+|||||++.|++..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.90 E-value=0.26 Score=21.97 Aligned_cols=42 Identities=19% Similarity=0.341 Sum_probs=31.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEE
Q ss_conf 85099789998799992889999994048999858-9989950
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGE-VLLDGEN 374 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~-i~~~g~~ 374 (1303)
=++.|.++.+.|++||||||++..+........|. |.+|...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8666336999648874889999999998754898899998976
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.58 E-value=0.31 Score=21.40 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+|+++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.55 E-value=0.3 Score=21.57 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.50 E-value=0.26 Score=22.06 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899987999928899999940489
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
..+.+.||+|||||++++.+.....
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.42 E-value=0.6 Score=19.19 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.39 E-value=0.48 Score=19.97 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.36 E-value=0.35 Score=21.04 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=26.5
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 1388509978999879999288999999404
Q 000751 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 330 i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
.-+.+-+||+.+|.|++|+|||||+.-+..-
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 0256367887776679998989999999998
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.36 E-value=0.61 Score=19.17 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999982799986889998705-----66588658
Q 000751 1084 TVAVVGVSGSGKSTIISLIER-----FYDPVAGQ 1112 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r-----l~~p~~G~ 1112 (1303)
++.++|.+|+|||||++-+.. .|.|+.|.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~ 39 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999998995989999999709888545763120
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.33 E-value=0.28 Score=21.80 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7899987999928899999940
Q 000751 338 KAVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
.++.++|.+|+|||||++-+.+
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899388999999971
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.32 E-value=0.27 Score=21.91 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899987999928899999940489
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
=.++|||.+.+|||||.+.+.+--.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~ 35 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVL 35 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3799978999989999999977898
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.24 E-value=0.26 Score=22.07 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHH-HHCCCCCCCCEEEE
Q ss_conf 7899987999928899999-94048999858998
Q 000751 338 KAVALVGRNGSGKSSIIPL-MERFYDPTLGEVLL 370 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~l-l~~~~~~~~G~i~~ 370 (1303)
..+.|+|++|||||++++. +...+....+-|.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii 84 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV 84 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 6589990799968999999999998479988999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.24 E-value=0.29 Score=21.70 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 89998799992889999994-0489
Q 000751 339 AVALVGRNGSGKSSIIPLME-RFYD 362 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~-~~~~ 362 (1303)
+++++|.+|+|||||++-+. +.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999992989999999739998
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.18 E-value=0.29 Score=21.63 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.16 E-value=0.24 Score=22.27 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
+++++|.+|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999908899999998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.14 E-value=0.25 Score=22.13 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=22.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 78999879999288999999404899
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
++++|-|.-||||||++++|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.98 E-value=0.3 Score=21.60 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.94 E-value=0.37 Score=20.86 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+++++|..|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.88 E-value=0.61 Score=19.17 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999982799986889998705-----66588658
Q 000751 1084 TVAVVGVSGSGKSTIISLIER-----FYDPVAGQ 1112 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r-----l~~p~~G~ 1112 (1303)
++.++|.+|+|||||++-+.. .|.|+-|.
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~ 37 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999999995989999999729999865872010
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.86 E-value=0.3 Score=21.56 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.84 E-value=0.31 Score=21.44 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899987999928899999940
Q 000751 339 AVALVGRNGSGKSSIIPLMER 359 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~ 359 (1303)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.84 E-value=0.23 Score=22.49 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=44.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC---CCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCC-CCCCCHHHHH--HCCCCCC
Q ss_conf 999982799986889998705---665886589999960799997876413688836786-6721289999--7188899
Q 000751 1084 TVAVVGVSGSGKSTIISLIER---FYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPI-IFSTTIRENI--IYARHNA 1157 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r---l~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~-Lf~gTIreNI--~~g~~~~ 1157 (1303)
.+||+|+.|||||||+..|+- ..+ ..|++. +|..+.++......+.+++-..-.. -+.+ -+-|| ++|..+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~-~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKD-HRINIIDAPGHVDF 84 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETT-EEEEEECCCSSSSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCC-EEEEEECCCCHHHH
T ss_conf 999995898998999999999648534-023365-184698565888751886001123431598-38999527860226
Q ss_pred CHHHHHHHHHHH
Q ss_conf 999999999995
Q 000751 1158 SEAEVKEAARIA 1169 (1303)
Q Consensus 1158 ~~~ei~~al~~a 1169 (1303)
. .+...+++.+
T Consensus 85 ~-~e~~~~l~~~ 95 (276)
T d2bv3a2 85 T-IEVERSMRVL 95 (276)
T ss_dssp S-TTHHHHHHHC
T ss_pred H-HHHHHHHHHH
T ss_conf 9-9999999963
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.80 E-value=0.35 Score=20.99 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+++++|..|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.79 E-value=0.52 Score=19.67 Aligned_cols=28 Identities=39% Similarity=0.534 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHH--HCCCCCCCC
Q ss_conf 8999879999288999999--404899985
Q 000751 339 AVALVGRNGSGKSSIIPLM--ERFYDPTLG 366 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll--~~~~~~~~G 366 (1303)
++.++|.+|+|||||++-+ ...+.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=84.77 E-value=0.35 Score=21.01 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
++.++|++|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.59 E-value=0.45 Score=20.14 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999982799986889998705-----6658865
Q 000751 1084 TVAVVGVSGSGKSTIISLIER-----FYDPVAG 1111 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r-----l~~p~~G 1111 (1303)
+++++|.+|+|||||++.+.+ -|+|+.|
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~ 37 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE 37 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 999999799899999999980988986577410
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.56 E-value=0.33 Score=21.24 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 998899838999999898999999999861997399981287410
Q 000751 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508 (1303)
Q Consensus 464 ~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~ 508 (1303)
+..++++||.-. +.......+...+.........+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 359999824432-32157787752011233333665314743021
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.50 E-value=0.5 Score=19.84 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
++.++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.47 E-value=0.4 Score=20.54 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=27.1
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 01588638979999827999868899987056
Q 000751 1074 NFSLKVNGGQTVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1074 ~isl~I~~Ge~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
|.=+.+-+||+++|.|++|+|||+|+.-+.+-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 10256367887776679998989999999998
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.41 E-value=0.33 Score=21.27 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
++.++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=84.38 E-value=0.31 Score=21.43 Aligned_cols=21 Identities=19% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999899999999964
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.35 E-value=0.21 Score=22.83 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
+++++|.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFS 27 (173)
T ss_dssp EEEEECCCCC----------
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949999999997
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.24 E-value=0.39 Score=20.62 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=47.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCC
Q ss_conf 86389799998279998688999870566588658-99999607999978764136888367866721289999718889
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ-VLLDGRDLKLYNLRWLRNHLGLVQQEPIIFSTTIRENIIYARHN 1156 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~-I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~gTIreNI~~g~~~ 1156 (1303)
-++.|..+-+.|++||||||+...+........|. |+||.-. .++.+.+++ ++. |+ ||+.+..++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~Gv---D~--------d~il~~~~~ 121 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGV---DT--------DSLLVSQPD 121 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTC---CG--------GGCEEECCS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHH-HCC---CH--------HHEEEECCC
T ss_conf 8666336999648874889999999998754898899998976--679999998-099---88--------995896699
Q ss_pred CCHHHHHHHHH
Q ss_conf 99999999999
Q 000751 1157 ASEAEVKEAAR 1167 (1303)
Q Consensus 1157 ~~~~ei~~al~ 1167 (1303)
+-|++.+.++
T Consensus 122 -~~E~~~~~~~ 131 (269)
T d1mo6a1 122 -TGEQALEIAD 131 (269)
T ss_dssp -SHHHHHHHHH
T ss_pred -CHHHHHHHHH
T ss_conf -8999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.20 E-value=0.27 Score=21.89 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9978999879999288999999404899985899899
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDG 372 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 372 (1303)
|...+.++||+|+|||.|++.|...+.. --+.+|.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~ 85 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM 85 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECC
T ss_conf 7658999778750069999999863367--7067415
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.18 E-value=0.3 Score=21.53 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=31.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCE
Q ss_conf 8509978999879999288999999404899985-8998995
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG-EVLLDGE 373 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~ 373 (1303)
=++.|.++-+.|++|||||||+..+.....-..| -+++|..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 866754789805876522799999999997079989999887
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.15 E-value=0.29 Score=21.68 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 799998279998688999870566
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
..+-+.||.|+|||++++.+.+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 079988969998899999986201
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.13 E-value=0.39 Score=20.69 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
+++++|.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949899999998
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.07 E-value=0.42 Score=20.39 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+++++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.06 E-value=0.4 Score=20.60 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 899987999928899999940489998589
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDPTLGEV 368 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 368 (1303)
.++|=|+-||||||+++.|...+......+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v 36 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRI 36 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 999988877889999999999873468856
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.95 E-value=0.39 Score=20.70 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998279998688999870566
Q 000751 1085 VAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1085 vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
+-+.||.|+|||++++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 6876699888308999999874
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.93 E-value=0.39 Score=20.70 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
+++++|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999989999999996
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.92 E-value=0.36 Score=20.93 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHH-HCCC
Q ss_conf 8999879999288999999-4048
Q 000751 339 AVALVGRNGSGKSSIIPLM-ERFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll-~~~~ 361 (1303)
+++++|+.|+|||||++-+ .+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~~ 31 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGAF 31 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999299999999971998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=0.34 Score=21.10 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7999982799986889998705665
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
+.|+|-|.-||||||++++|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.88 E-value=0.41 Score=20.49 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
++.+||.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.83 E-value=0.1 Score=25.19 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999827999868899987056
Q 000751 1084 TVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
+|+++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=83.57 E-value=0.43 Score=20.34 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=36.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEECCCCCHHHHHCCEEE
Q ss_conf 86389799998279998688999870566588658-9999960799997876413688
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQ-VLLDGRDLKLYNLRWLRNHLGL 1134 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~-I~idG~di~~~~~~~lR~~i~~ 1134 (1303)
=++.|..+-|.|++||||||+...+.....-..|. ++||.- ..++++.+ +++++
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE--~~~~~~~a-~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE--HALDPVYA-RALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS--CCCCHHHH-HHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECC--CCCCHHHH-HHHCC
T ss_conf 866754789805876522799999999997079989999887--65899999-98289
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.52 E-value=0.58 Score=19.31 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 89998799992889999994048999858
Q 000751 339 AVALVGRNGSGKSSIIPLMERFYDPTLGE 367 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 367 (1303)
++.++|.+|+|||||++-+....-|+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999999988899999884089797247
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.30 E-value=0.28 Score=21.78 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998279998688999870566
Q 000751 1085 VAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1085 vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
+-+.||.|+||||+++++.+.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=83.28 E-value=0.33 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 789998799992889999994048
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
=++.++|++|+|||||++-+..-.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=83.28 E-value=0.73 Score=18.53 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=69.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEECCCCCCCCC-----CHHHHHHCC---
Q ss_conf 979999827999868899987056658865899999607999978764136888367866721-----289999718---
Q 000751 1082 GQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRNHLGLVQQEPIIFST-----TIRENIIYA--- 1153 (1303)
Q Consensus 1082 Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~p~Lf~g-----TIreNI~~g--- 1153 (1303)
...+.+|||+|+||||.+.-|...+.- .| ++++++.=|.+=-.+ +..+-+...
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~-~g------------------~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~ 70 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG-KG------------------RRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 70 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-TT------------------CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-CC------------------CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 868999899999889999999999997-79------------------92799954434640888899999862886311
Q ss_pred -CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCC-CCCC-CCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf -8899999999999995269999819998664237-8888-889589-99999999970399999984778999989899
Q 000751 1154 -RHNASEAEVKEAARIANAHHFISSLPHGYDTHVG-MRGV-DLTPGQ-KQRIAIARVVLKNAPILLLDEASSSIESESSR 1229 (1303)
Q Consensus 1154 -~~~~~~~ei~~al~~a~l~~~I~~lp~Gldt~vg-e~G~-~LSGGQ-kQRiaLARAll~~p~ILlLDEaTSaLD~~te~ 1229 (1303)
....+.+++...+.. .... .+.|-.+= --|. .....+ ++.-.+.++. ..-.+++.-.++..-|...
T Consensus 71 ~~~~~~~~~~~~~~~~---~~~~----~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~-~~~~~llv~~a~~~~~~~~-- 140 (207)
T d1ls1a2 71 VMDGESPESIRRRVEE---KARL----EARDLILVDTAGRLQIDEPLMGELARLKEVL-GPDEVLLVLDAMTGQEALS-- 140 (207)
T ss_dssp CCTTCCHHHHHHHHHH---HHHH----HTCCEEEEECCCCSSCCHHHHHHHHHHHHHH-CCSEEEEEEEGGGTHHHHH--
T ss_pred CCCCCHHHHHHHHHHH---HHHH----CCCCCEEECCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHH--
T ss_conf 1244203678888988---8763----3676403345442000036688999998631-8736999843455616899--
Q ss_pred HHHHHHHHHHCCCCEEEEEEC-----CCHH----HHHCC-EEEEEECCEEEE
Q ss_conf 999999984419929999833-----9016----74059-899996989988
Q 000751 1230 VVQEALDTLIMGNKTTILIAH-----RAAM----MRHVD-NIVVLNGGRIVE 1271 (1303)
Q Consensus 1230 ~I~~~l~~~~~~~~TvI~IaH-----rl~t----i~~aD-~Iivl~~G~Ive 1271 (1303)
.+....+.. +-+-+++|+ |... ....+ -|..+..|+..|
T Consensus 141 ~~~~f~~~~---~~~~~I~TKlDe~~~~G~~l~~~~~~~~Pi~~i~~Gq~pe 189 (207)
T d1ls1a2 141 VARAFDEKV---GVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPE 189 (207)
T ss_dssp HHHHHHHHT---CCCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC------
T ss_pred HHHHHHHHC---CCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCHH
T ss_conf 999998647---9970588603765653189999999798989993798856
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.27 E-value=0.55 Score=19.49 Aligned_cols=21 Identities=19% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
++.++|.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=83.27 E-value=0.34 Score=21.16 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=30.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-ECCEEC
Q ss_conf 8638979999827999868899987056658865899-999607
Q 000751 1078 KVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVL-LDGRDL 1120 (1303)
Q Consensus 1078 ~I~~Ge~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I~-idG~di 1120 (1303)
.++++..+.++||.|+|||++.+.|.+++. |.+. +++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCH
T ss_conf 899767699989999888999999999859---97899977420
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.07 E-value=0.67 Score=18.83 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.79 E-value=0.45 Score=20.14 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89999999999703999--99984778999989899999999984419929999833
Q 000751 1196 GQKQRIAIARVVLKNAP--ILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250 (1303)
Q Consensus 1196 GQkQRiaLARAll~~p~--ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaH 1250 (1303)
.+.+...+++..+.+++ |+....++..........+.+.++.. ..+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~--~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE--GKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS--CSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC--CCEEEEEEEC
T ss_conf 899999999999827775168763256310034999999973867--8858999820
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=82.76 E-value=0.2 Score=22.95 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9978999879999288999999404899
Q 000751 336 AKKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 336 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
.|.-+.++|+.|+|||||++.+.+.++|
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9970899889985299999999873798
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.62 E-value=0.51 Score=19.75 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=26.5
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCCE----EEECCEEC
Q ss_conf 79999827999868899987-0566588658----99999607
Q 000751 1083 QTVAVVGVSGSGKSTIISLI-ERFYDPVAGQ----VLLDGRDL 1120 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL-~rl~~p~~G~----I~idG~di 1120 (1303)
-++.++|.+|+|||||++-+ .+-+.|+-|- +.++++.+
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~ 49 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNF 49 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCEEE
T ss_conf 7799998999988999998950982788886789999776999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.60 E-value=0.43 Score=20.33 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 998899838999999898999999999861997399981287410
Q 000751 464 NPSILLLDEVTGGLDFEAERAVQEALDLLMLGRSTIIIARRLSLI 508 (1303)
Q Consensus 464 ~~~ililDE~ts~lD~~~~~~~~~~l~~~~~~~t~i~i~h~~~~~ 508 (1303)
+..++++||.- .+.......+...+.........+++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf 71899996632-000237899998863112002320126708775
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.50 E-value=0.78 Score=18.32 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7999982799986889998705
Q 000751 1083 QTVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
=+++++|.+|+|||||++-+.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999999899789999999971
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.44 E-value=0.44 Score=20.28 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCC
Q ss_conf 89998799992889999994-048
Q 000751 339 AVALVGRNGSGKSSIIPLME-RFY 361 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~-~~~ 361 (1303)
+++++|.+|+|||||++-+. +-+
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~f 28 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNKF 28 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999699999999971999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.40 E-value=0.41 Score=20.48 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999879999288999999404
Q 000751 339 AVALVGRNGSGKSSIIPLMERF 360 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~~~ 360 (1303)
-++++|+.++|||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.39 E-value=0.55 Score=19.51 Aligned_cols=25 Identities=16% Similarity=0.474 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899987999928899999940489
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
=-++++|+..+|||||+..|.+...
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 0899997248869999999970412
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.37 E-value=0.51 Score=19.78 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
++.++|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.34 E-value=0.44 Score=20.24 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89589999999999703999--99984778999989899999999984419929999833
Q 000751 1193 LTPGQKQRIAIARVVLKNAP--ILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAH 1250 (1303)
Q Consensus 1193 LSGGQkQRiaLARAll~~p~--ILlLDEaTSaLD~~te~~I~~~l~~~~~~~~TvI~IaH 1250 (1303)
-...+.+-.++++..+.++. |++.+.++..+.......+.+.+... +.+|++++++
T Consensus 144 ~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~--~~r~i~Vltk 201 (299)
T d2akab1 144 PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITK 201 (299)
T ss_dssp CTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCCEEEEEEC
T ss_conf 314799999999998627560356640345421125999999973867--7813667702
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.15 E-value=0.51 Score=19.74 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHH--HCCCCCCCCE
Q ss_conf 9999827999868899987--0566588658
Q 000751 1084 TVAVVGVSGSGKSTIISLI--ERFYDPVAGQ 1112 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL--~rl~~p~~G~ 1112 (1303)
++.++|.+|+|||||++-+ ..-+.|+-|-
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf 9999989999989999988468988872414
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.12 E-value=0.73 Score=18.55 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
++.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.11 E-value=0.62 Score=19.11 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
++.++|.+|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.00 E-value=0.74 Score=18.48 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
++.++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.94 E-value=0.43 Score=20.32 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998279998688999870566
Q 000751 1085 VAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1085 vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
+.++||+|+|||.|++.|.+.+
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHC
T ss_conf 9997787500699999998633
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.94 E-value=0.66 Score=18.89 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+++++|+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.89 E-value=0.43 Score=20.32 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799992889999994048
Q 000751 340 VALVGRNGSGKSSIIPLMERFY 361 (1303)
Q Consensus 340 ~~ivG~sGsGKSTl~~ll~~~~ 361 (1303)
+.+.||+|+||||+++++...+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.83 E-value=0.48 Score=19.92 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89998799992889999994
Q 000751 339 AVALVGRNGSGKSSIIPLME 358 (1303)
Q Consensus 339 ~~~ivG~sGsGKSTl~~ll~ 358 (1303)
+++++|.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989989999999997
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.74 E-value=0.56 Score=19.41 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+|.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999298999999973
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.64 E-value=0.78 Score=18.32 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998279998688999870
Q 000751 1084 TVAVVGVSGSGKSTIISLIE 1103 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~ 1103 (1303)
++.++|..|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999949899999998
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.48 E-value=0.44 Score=20.27 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=24.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 99987999928899999940489998589989950
Q 000751 340 VALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGEN 374 (1303)
Q Consensus 340 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~ 374 (1303)
+.++||||+|||-|++.|..+++. .-+.+|-..
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~s~ 103 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDATS 103 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--CEEEHHHHH
T ss_conf 244189986378999999864435--331112220
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.40 E-value=0.47 Score=20.04 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89799998279998688999870566
Q 000751 1081 GGQTVAVVGVSGSGKSTIISLIERFY 1106 (1303)
Q Consensus 1081 ~Ge~vaIVG~SGSGKSTLl~lL~rl~ 1106 (1303)
|=..|+|+|+.++|||||++.|++..
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 87999988999997999999980998
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.20 E-value=0.52 Score=19.69 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 79999827999868899987056
Q 000751 1083 QTVAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1083 e~vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
.++.++|.+|+|||||++.+..-
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998993889999999719
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| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.09 E-value=0.39 Score=20.70 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=26.9
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 1388509978999879999288999999404899
Q 000751 330 FYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDP 363 (1303)
Q Consensus 330 i~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 363 (1303)
.=+.+-+|++.+|+|++|+|||+|+..+.....-
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~ 93 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG 93 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT
T ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 0145467766760067788857999997765404
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| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=80.89 E-value=0.68 Score=18.78 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999982799986889998705665
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYD 1107 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~ 1107 (1303)
.+||+|+..+|||||++.|.+...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
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| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.88 E-value=0.48 Score=19.95 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999827999868899987056
Q 000751 1085 VAVVGVSGSGKSTIISLIERF 1105 (1303)
Q Consensus 1085 vaIVG~SGSGKSTLl~lL~rl 1105 (1303)
+-+.||.|+||||+++++.+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889987755899999998
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| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.64 E-value=0.57 Score=19.37 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+|.++|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
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| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=80.61 E-value=0.88 Score=17.89 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=26.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 8509978999879999288999999404899985
Q 000751 333 TVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLG 366 (1303)
Q Consensus 333 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 366 (1303)
..++-.++.+.||.++|||+++.+|..++ +..|
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~ 132 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYG 132 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHS-SCEE
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHH-CCHH
T ss_conf 99761799998589887789999999983-6202
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| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.59 E-value=0.9 Score=17.83 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=24.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999982799986889998705665886589
Q 000751 1084 TVAVVGVSGSGKSTIISLIERFYDPVAGQV 1113 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~rl~~p~~G~I 1113 (1303)
++.++|..|+|||||++-+....-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 999999999888999998840897972479
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| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.26 E-value=0.58 Score=19.29 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999982799986889998705
Q 000751 1084 TVAVVGVSGSGKSTIISLIER 1104 (1303)
Q Consensus 1084 ~vaIVG~SGSGKSTLl~lL~r 1104 (1303)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
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| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.08 E-value=0.58 Score=19.30 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899987999928899999940489
Q 000751 338 KAVALVGRNGSGKSSIIPLMERFYD 362 (1303)
Q Consensus 338 ~~~~ivG~sGsGKSTl~~ll~~~~~ 362 (1303)
-.++|-|+-||||||+++.|...+.
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2999989867789999999999817
|