Citrus Sinensis ID: 000758

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------130
Protein Sequence
MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGSNPENTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQERPARKRRWISN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEcccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHcccccccccHHHHHccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccHHHccccHHHHccccccccccccHHcccccccccccccccHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHccccccccccccccccccccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHcccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEEHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccEEcccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHccccccHHHHHcccccccHHHccccccccccHHHccccHHHHHHHHccHHHHccccccHHHHHHHcccHHHHccccccHHHHHHHHcHHccHHHHHccHHccHHHHHHHHHHcccccccccccccccccHHHHHcHHHHHHHHHHccccHHHHcccHHHHHHccccHHHcHHHHHHHHHccHHcccHHHHHHHHcHHHHHHHHHHcccccHHccccHccHHHHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHccccHcccHHHHcHHHHccccccccccccccHccccccHHHccccHHHHHHHccccHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcHcccccccHccccHHHHHHHHHHHHccHHHHccccccHHcccccHccHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccccccccccHHHHHHccc
Coil and Loop (DISEMBL)
medddefgdlytdvlrplsaasqsphqtspaaptslhrpidldlnlksndhpasapnstpphtlaptpplpsfhappradtdgeftdndndvkvKFDIEeanngisndddvpgieipgisqnsvensehqnrnegeageeaeddwesdsedDLQIVLnednhrpmlidggggdddddedgdplvIVADadasnhqglmveeqewggddapaqmgeggaekkegtgerangAAASAATAAAAAKIGysnhfayhnpyhsqfkyvrpgaapipgsatavaaggpgqvrplvnmgpaagrgrgdwrpagmktappmqkgfhpgfgmsasgvnmagrgleftlpshktifevdidgfeekpwkypgvditdffnfglneESWKDYCKQLEQHRLETTMQSKIRVyesgrdqptgraiqveggsgerlpsidtrpprirdsdAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdteyFDGFREAYDSRNRElvrheapfmnvahdnipegngllpfppeaplryrpgsrgptpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdnqdeesvesmegkhsplsspvivRDARELSVEHKDAVhdelvlgdgssavekeetnavttsdsrkdgkalyspktkkinsqveqpelqefdeeedSRAArssenskarsgssrdnkkwregDEEVMQDRRstrmgsmkkhpeeneqsFRRKDREGRQEMERNRMVAIGregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriEDTRKREREHLDEIGarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslKSRYEMVDDYISkrrkddeyvrrdhaekdeilhghrdltsrrkrerDDILDQRRREDQQRIREnfddhhpvrhkdenwsqreRGERQREredwhrlkpheeiLSKREreegrgavrsgrssedrawvgharvkdeykgsdkeyqvkDTVRHSEQLKrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghvsemgvkdtheqgncgnekpvhgnssrkekeeassddehqdsrrgrsklerwtshkerdfninsksssslkfkeinknsngrtletskipeepatavepvdkqspmadkkdgsnpentkpvddrhLDTVEKLKKRSerfklpmpsekdTLAIKKmeseplpstksetaagseikqerparkrrwisn
Flexible Loop (DISEMBL)
MEDDDEFGDLYTDVLRPlsaasqsphqtspaaptslhRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEAnngisndddvpgIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLettmqskirvyesgrdqptgraiqveggsgerlpsidtrpprirdSDAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPtpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdNQDEESVesmegkhsplsspVIVRDARELSVEHKDAVhdelvlgdgssavekeetnavttsdsrkdgkalyspktkkinsqveqpelqefdeeedsraarssenskarsgssrdnkkwregdeevmqdrrstrmgsmkkhpeeneqsfrrkdregrqeMERNRMvaigregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriedtrkrerehldeigarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslksryemvddyiskrrkddeyvrrdhaekdeilhghrdltsrrkrerddildqrrredqqrirenfddhhpvrhkdenwsqrergerqreredwhrlkpheeilskrereegrgavrsgrssedrawvgharvkdeykgsdkeyqvkdtvrhseqlkrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsgHVSEMgvkdtheqgncgnekpvhgnssrkekeeassddehqdsrrgrsklerwtshkerdfninsksssslkfkeinknsngrtletskipeepatavepvdkqspmadkkdgsnpentkpvddrhldTVEKLkkrserfklpmpsekdtlaikkmeseplpstksetaagseikqerparkrrwisn
Low Complexity Region (SEG)
MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNStpphtlaptpplpSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNegeageeaeddwesdseddLQIVLNEDNHRPMLIdggggdddddedgdPLVIVADADASNHQGLMVEEQEWGGDDAPAQMgeggaekkegtgeRangaaasaataaaaaKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVeqpelqefdeeedsraarssensKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKrerddildqrrredqqrireNFDDHHPVRHKDENWSqrergerqrereDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGSNPENTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQERPARKRRWISN
Disordered region (IsUnstruct)
**********************************************************************************************************************************************************************************************************************************************AAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPI*********************************************************VNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL***********************************************AIIEIVC*****************************************YFDGFR****************FM**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***DDEFGDLYTDVLR*********************************************************************************************D***IEI************************************LQIVL***********************DPLVIVAD*******************************************************************YHSQFKY************************************************************************LEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCK***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RW***
Disordered Region (DISEMBL)
MEDDDEFGDLYTDVLRPLS***************SLHRPIDLDLNLKSND***********HTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNS****************************DLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQM***************************AAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSV**************LPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG*************************************************SSPVIVRDARELSVEHKDAVHDELVLGDGSSAV************************************************************************************************************MERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGF*********************SRKNRIEDTRKREREHLDEIG************IDRDEYLHSRKQLDNGSYR*****************LKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKD****************DWHRLKPHEEILSKR******************AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRR*************REDVYARGNQI***********************************************HNSLVAS********************EQGNCGNE*****************************KLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAV*********************KPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKME*******************************
Disordered Region (DISPRO)
*****EFGDLYTDVLRPLS************************************************************************VKVKFDI***NNGISNDDDVPGI**********************************SEDDLQIVLNED******************DGDPLVIVADADASNHQGLMVEEQEW**D******************************AAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRD*P**RAI******GERLPSIDTRPPRIRDSDAIIEIVCQDS********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RHLDTVEKLKKRSER*K***********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGSNPENTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQERPARKRRWISN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1299	2.2.26 [Sep-21-2011]
Q5XJD3	570	Pre-mRNA 3'-end-processin	no	no	0.051	0.117	0.394	4e-11
Q9D824	581	Pre-mRNA 3'-end-processin	yes	no	0.057	0.129	0.376	8e-11
Q5U317	536	Pre-mRNA 3'-end-processin	yes	no	0.057	0.139	0.376	1e-10
Q5RAA7	588	Pre-mRNA 3'-end-processin	yes	no	0.050	0.110	0.405	1e-10
Q6UN15	594	Pre-mRNA 3'-end-processin	no	no	0.068	0.149	0.343	1e-10
Q09801	344	Pre-mRNA polyadenylation	yes	no	0.036	0.136	0.468	2e-09
Q6FJ55	327	Pre-mRNA polyadenylation	yes	no	0.065	0.259	0.340	1e-07
Q6C784	221	Pre-mRNA polyadenylation	yes	no	0.041	0.244	0.462	1e-07

>sp|Q5XJD3|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 320 GFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWK 379
           G G    GV++   G    +P    + E D++ FEEKPW+ PG D++D+FN+G NE++WK
Sbjct: 140 GAGAKVKGVDLEAPGSINGVP----VLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWK 195

Query: 380 DYCKQLEQHRL 390
            YC++ ++ R+
Sbjct: 196 AYCEKQKRLRM 206

Involved in mRNA processing.
Danio rerio (taxid: 7955)

>sp|Q9D824|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 10/85 (11%)

Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
           G    GV++   G    +P    + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 132 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

Query: 382 CKQLEQHRL------ETTMQSKIRV 400
           C++ ++ R+       T+  +KI V
Sbjct: 188 CEKQKRIRMGLEVIPVTSTTNKITV 212

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex.

Mus musculus (taxid: 10090)

>sp|Q5U317|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus GN=Fip1l1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 10/85 (11%)

Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
           G    GV++   G    +P    + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 132 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

Query: 382 CKQLEQHRL------ETTMQSKIRV 400
           C++ ++ R+       T+  +KI V
Sbjct: 188 CEKQKRIRMGLEVIPVTSTTNKITV 212

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex.

Rattus norvegicus (taxid: 10116)

>sp|Q5RAA7|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
           G    GV++   G    +P    + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 118 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 173

Query: 382 CKQLEQHRL 390
           C++ ++ R+
Sbjct: 174 CEKQKRIRM 182

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex.

Pongo abelii (taxid: 9601)

>sp|Q6UN15|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 10/99 (10%)

Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
           G    GV++   G    +P    + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct: 133 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 188

Query: 382 CKQLEQHRL------ETTMQSKIRVYESGRDQPTGRAIQ 414
           C++ ++ R+       T+  +KI   +   +   G  IQ
Sbjct: 189 CEKQKRIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQ 227

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex.

Homo sapiens (taxid: 9606)

>sp|Q09801|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 34/47 (72%)

Query: 343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHR 389
           K IFE+D++ F++KPW+ PG DI+D+FN+G +E +W  YC +    R
Sbjct: 116 KNIFEIDLESFDDKPWRKPGADISDYFNYGFDEFTWAAYCAKQTTLR 162

Pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6FJ55|FIP1_CANGA Pre-mRNA polyadenylation factor FIP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FIP1 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 9/94 (9%)

Query: 322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
           G SA G+++   GL    P    +  +D +  +EKPW+ PG +I+D+FN+G NE +W +Y
Sbjct: 161 GTSAEGIDLDKEGLYNDEP----VSTIDPEVLKEKPWRQPGANISDYFNYGFNEYTWMEY 216

Query: 382 CKQLEQHRLET----TMQSKIRVYESGR-DQPTG 410
             + E+ R E      +   + + + GR DQP G
Sbjct: 217 LHRQEKLRQEYNPRRILMGLMTLQQQGRLDQPQG 250

Pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q6C784|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FIP1 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQS 396
           K I E +++ FE+KPW+ PG DITD+FN+G +E +W  YC +  Q R E   Q+
Sbjct: 125 KPITEHNLEDFEDKPWRMPGADITDYFNYGFDEFTWMAYCDKQNQIRGEYNPQN 178

Pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1299
359484826	1417	PREDICTED: uncharacterized protein LOC10	0.909	0.834	0.592	0.0
255565011	1365	ATP binding protein, putative [Ricinus c	0.970	0.923	0.555	0.0
224142409	1433	predicted protein [Populus trichocarpa]	0.948	0.859	0.527	0.0
224091696	1336	predicted protein [Populus trichocarpa]	0.963	0.936	0.539	0.0
449457917	1399	PREDICTED: uncharacterized protein LOC10	0.965	0.896	0.508	0.0
147863604	1798	hypothetical protein VITISV_010335 [Viti	0.730	0.527	0.575	0.0
356533011	1316	PREDICTED: uncharacterized protein LOC10	0.935	0.923	0.493	0.0
356554872	1302	PREDICTED: uncharacterized protein LOC10	0.929	0.927	0.492	0.0
449521886	1174	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.668	0.740	0.545	0.0
297743639	824	unnamed protein product [Vitis vinifera]	0.457	0.720	0.573	0.0

>gi|359484826|ref|XP_002276238.2| PREDICTED: uncharacterized protein LOC100251960 [Vitis vinifera]

 Score = 1268 bits (3280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 769/1297 (59%), Positives = 914/1297 (70%), Gaps = 115/1297 (8%)

Query: 82   DGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENS-----EHQNRNEGE 136
            D +F + D    V FDIEE + G + D  +  I IPG+S      S     E QNR +  
Sbjct: 157  DVDFMEKD----VNFDIEEVD-GEAGDVGLDPI-IPGLSAAPAIPSLDAPVEPQNREKTN 210

Query: 137  AGEEAEDDW-------ESDSEDDLQIVLNEDNHRPMLIDGGG--GDDDDDEDGDPLVIVA 187
                A DD        +SDSEDDLQIVLN++NH PM  +  G  G DD+DEDGDPLVIVA
Sbjct: 211  V--VARDDASVQGDDWDSDSEDDLQIVLNDNNHGPMAAERNGVMGSDDEDEDGDPLVIVA 268

Query: 188  DADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAA--KIG 245
            D D ++     +EEQEWG D A               GER  GA A+    A A   KIG
Sbjct: 269  DGDQTHPP---LEEQEWGEDTAV-------------DGERKEGADAAKVNGAIAGPPKIG 312

Query: 246  YSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPA 305
            YS+H  YH P+HSQFKYVRPGAAPIPG+A  V  G PGQVRPL N+GP  GRGRGDWRPA
Sbjct: 313  YSSH-GYH-PFHSQFKYVRPGAAPIPGAAAVVPGGTPGQVRPLANIGPVPGRGRGDWRPA 370

Query: 306  GMKTAPPMQKGFHPGFGMSASGVNMAGRG----LEFTLPSHKTIFEVDIDGFEEKPWKYP 361
            G+K APPMQK FH GFG  A G NMAGRG    LEFTLPSHKTIF+VDID FEEKPW++P
Sbjct: 371  GIKNAPPMQKNFHSGFGAPAWGGNMAGRGFGGGLEFTLPSHKTIFDVDIDSFEEKPWRHP 430

Query: 362  GVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQ-------------- 407
            GVDI+DFFNFG NEESWK YCKQLEQ RLE TMQ+KIRVYESGR +              
Sbjct: 431  GVDISDFFNFGFNEESWKQYCKQLEQLRLEATMQTKIRVYESGRTEQEYDPDLPPELAAA 490

Query: 408  ----------------------------------PTGRAIQVEGGSGERLPSIDTRPPRI 433
                                              PTGRAIQVEGG GERLPS+DTRPPR+
Sbjct: 491  VGIHDVSAENGNLGRADVGPSDLAKASARVRPPIPTGRAIQVEGGCGERLPSVDTRPPRV 550

Query: 434  RDSDAIIEIVCQDSVDDDSSAGNGDR---DNDLPREDRRGENDGAEDEMGPVDTEYFDGF 490
            RDSDAIIEI  Q S+DDDS  GNG     DNDLPRED R  N+  ED+    DTEYFD F
Sbjct: 551  RDSDAIIEITLQGSLDDDSPTGNGAPEPPDNDLPREDLRVGNE-VEDDAAQEDTEYFDSF 609

Query: 491  REAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG 550
               Y  RNRELV   APFMN   D++P G+G+LPFPPEAP++YRPGSRG  P +PG N G
Sbjct: 610  STTYSGRNRELVGRSAPFMNSLRDDMPGGDGILPFPPEAPVQYRPGSRGQDPVHPGGNFG 669

Query: 551  TSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARE 610
            T HE R        +SP MTP QS +  +F D+Q EESVESM+ K    SSPV V   RE
Sbjct: 670  TPHEDR-----AHGKSPHMTPIQSTRDNRFLDSQKEESVESMDVK-GMTSSPVRVAPPRE 723

Query: 611  LSVEHKDAVHDELVLGDGSSAVEKEE--TNAVTTSDSRKDGKALYSPKTKKINSQVEQPE 668
             SVE KDA+   +VL DG+S +E+EE  +N +T++D+ KD   +   K +K++S+VEQP 
Sbjct: 724  PSVEKKDALDGGIVLADGTSGMEREELTSNTMTSTDALKDENLIPFGKKQKLSSRVEQPP 783

Query: 669  LQEFDEEEDSRAARSSENSKARSGSSRDNKKWREG-DEEVMQDRRSTRMGSMKKHPEENE 727
             QE D +ED +A RSSENSKARS SSRD +KW +G +EEV++D  S RMG+ K+H +E+E
Sbjct: 784  PQELDGDEDLKATRSSENSKARSESSRDLQKWHDGGEEEVIEDGSSVRMGNSKRHLDEDE 843

Query: 728  QSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGV 787
            QSFRRKDR+GRQEMER+RMV  GRE ++P RD+D    H   +K + FDRRKER++SDG 
Sbjct: 844  QSFRRKDRDGRQEMERSRMVVKGREDTYPHRDWDSIPNHHSHVKTDSFDRRKERDSSDGG 903

Query: 788  WQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSY 847
            WQRR+D+ + R+ R ED RK+ER   DE+G+RHR K RESER ++DE LHSRK LDNGS+
Sbjct: 904  WQRRDDDLHGRRIRPEDARKQERG--DEMGSRHRSKVRESERSNKDELLHSRKLLDNGSW 961

Query: 848  RPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSR 907
            R H DKD  SRHRERDD+LKSRY  +DD   KRRKD+EY+RRDHAEK+E LH HR+  SR
Sbjct: 962  RGHQDKDMGSRHRERDDNLKSRYGNLDDLHGKRRKDEEYLRRDHAEKEETLHSHRESASR 1021

Query: 908  RKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLK-PHE 966
            RKRERDD+LDQR+R+DQ RIR+N DDHH VRHKDE W QRERGERQRERE+WHRL+ PHE
Sbjct: 1022 RKRERDDVLDQRKRDDQPRIRDNLDDHHSVRHKDEGWMQRERGERQREREEWHRLRQPHE 1081

Query: 967  EILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRER 1026
            E LSKREREEGRGAVRSGR +ED+AWV HAR KDEYKGSDK+YQ KDT RHSEQ KRR+R
Sbjct: 1082 ENLSKREREEGRGAVRSGRGAEDKAWVSHARGKDEYKGSDKDYQYKDTGRHSEQPKRRDR 1141

Query: 1027 IEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSR 1086
            +EDES   HRGREDVYARG+Q SNE+R+SRQERS  RND S+N SD+ RV++KKHKE++R
Sbjct: 1142 VEDESFSHHRGREDVYARGSQFSNEERRSRQERSSARNDHSSNASDHQRVHDKKHKENTR 1201

Query: 1087 KNRESEVGNHNSLVASKRNQEDQSGHVSEMGV-KDTHEQGNCGNEKPVHGNSSRKEKEEA 1145
            KN+ESE  + ++L  SKRNQED +   +E  + K T EQGN  +E  VH   SRK +E+A
Sbjct: 1202 KNKESEGADISTLGPSKRNQEDHNSQRNETVISKGTSEQGNGEHEILVH-RQSRKHREDA 1260

Query: 1146 SSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEP 1205
            SSDDE QDS+RGRSKLERWTSHKERD+N+N K SSS+K KEI +N++G +  T K P+E 
Sbjct: 1261 SSDDEQQDSKRGRSKLERWTSHKERDYNLNIKPSSSIKVKEIERNNSGGSPLTGKFPDES 1320

Query: 1206 ATAVEPVDKQSPMADKKDGS---NPENTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTL 1262
            A  VE VD Q  + +K  G       + KP++DRHLDTV KLKKRSERFKLPMPSEK+ +
Sbjct: 1321 AKTVEAVDSQQHVEEKDAGDLELKDADMKPMEDRHLDTVAKLKKRSERFKLPMPSEKEAV 1380

Query: 1263 AIKKMESEPLPSTKSETAAGSEIKQERPARKRRWISN 1299
            A+KK+ SE LP   +ET A SEIKQERPARKRRW+ N
Sbjct: 1381 AVKKVGSEALPPAPTETPADSEIKQERPARKRRWVGN 1417

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565011|ref|XP_002523498.1| ATP binding protein, putative [Ricinus communis] gi|223537205|gb|EEF38837.1| ATP binding protein, putative [Ricinus communis]

 Score = 1256 bits (3249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 779/1403 (55%), Positives = 955/1403 (68%), Gaps = 142/1403 (10%)

Query: 1    MEDDDEFGDLYTDVLRPLSAASQSP---HQTSPAAPTSLHRPIDLDLNLKSNDH------ 51
            MEDDDEFGDLYTDVLRP S++  S    H  SPA+  S+HRPIDL+LN   + H      
Sbjct: 1    MEDDDEFGDLYTDVLRPFSSSLSSDPSPHHPSPASAPSIHRPIDLNLNNNDDVHDDEILT 60

Query: 52   ---PASAPNSTPPH--------------TLAPTPPLPSFHAPPRADTDGEFTDNDNDVK- 93
                A   NS                   L+ +  +   + PP     G+  D  +D + 
Sbjct: 61   VSNSAQNNNSISAENNINNDSNNNNSVRVLSSSLDVKLQNNPP--SNKGDLVDMQSDKQD 118

Query: 94   --VKFDIEEAN---NGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESD 148
              + FDIEE     N I          IPG++  +  N + +N        E  +D +SD
Sbjct: 119  KDISFDIEEEEEEENPI----------IPGLTVEADVNDKRRNEEAANVAGEDLEDEDSD 168

Query: 149  SEDDLQIVLNEDNHRPM------LIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQ 202
            SEDDLQIVLN++    M       + GG  DDDDD+D DPLVIVAD DA+     M+EEQ
Sbjct: 169  SEDDLQIVLNDNGPTGMERGGGGGMIGGDEDDDDDDDDDPLVIVADGDANQ---AMMEEQ 225

Query: 203  EWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKY 262
            +WG              + E        A        A  KIGYSNH  YH+P+HSQFKY
Sbjct: 226  DWGS--VGEDAAAATGAEGERKEGGGETAGGKGGNVIAGPKIGYSNHV-YHHPFHSQFKY 282

Query: 263  VRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFG 322
            VRPGAAPIPG+ TA   G PGQVRP +NM P AGRGRGDWRPAGMK  PPMQKG+HPGFG
Sbjct: 283  VRPGAAPIPGATTAGPGGAPGQVRPPINMAPIAGRGRGDWRPAGMKNGPPMQKGYHPGFG 342

Query: 323  MSASGVNMAGRG----LEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESW 378
            M   G NMAGRG    LEFTLPSHKTIF+VDID FEEKPWKYPGVD++DFFNFGLNEESW
Sbjct: 343  MPW-GNNMAGRGFGGGLEFTLPSHKTIFDVDIDSFEEKPWKYPGVDMSDFFNFGLNEESW 401

Query: 379  KDYCKQLEQHRLETTMQSKIRVYESGRDQ------------------------------- 407
            KDYCKQLEQHRLETTMQSKIRVYESGR +                               
Sbjct: 402  KDYCKQLEQHRLETTMQSKIRVYESGRAEQEYDPDLPPELAAAAGMHDVPAENSNLGKSD 461

Query: 408  -----------------PTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDD 450
                             PTGRAIQVEGG GERLPSIDTRPPR RD D IIEIV QDS+DD
Sbjct: 462  VGQSDLTKGPARMRPPLPTGRAIQVEGGYGERLPSIDTRPPRTRDCDVIIEIVLQDSLDD 521

Query: 451  DSSAGNGDRDN---DLPREDRRGENDGAEDEMGPVDTEYFDG-FREAYDSRNRELVRHEA 506
            DSS+GNG  D    D P +D R E+   +DEM  ++T+++D    + YD R       +A
Sbjct: 522  DSSSGNGGLDGENGDPPSDDFR-ESHVHDDEMVQIETDHYDNDLSQGYDGRKDG---RKA 577

Query: 507  PFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRS 566
            P ++    NIPEG+G+LPF   +P + RPGSRG      G +     E+          S
Sbjct: 578  PVVDSGRINIPEGDGMLPFRHGSPSQNRPGSRGQRVSLSGGDFCPPDEES---------S 628

Query: 567  PRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPVIVRDARELSVEHKD-AVHDELV 624
            P  TPSQ  + ++F DN +EESVESM+GKHSPL SSP  VRDAR+LS E KD AV  E V
Sbjct: 629  PDSTPSQITRDKRFLDNVEEESVESMDGKHSPLVSSPTAVRDARDLSAEDKDVAVSGEPV 688

Query: 625  LGDGSSAVEKEETNA--VTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAAR 682
            L + SS +E++E N   VTT DS KDG   +S K +K+NS V Q  LQE D+ EDS+AAR
Sbjct: 689  LAEVSSGMERDEMNENEVTTKDSIKDGDVCHSTKKQKLNSHVGQSALQEVDDGEDSKAAR 748

Query: 683  SSENSKARSGSSRDNKKWREG-DEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEM 741
            SSENSKARSGSS+D +KW++  +EEVMQD R+   G++K+  EENE S RRK+R+ RQEM
Sbjct: 749  SSENSKARSGSSKDYQKWQDSVEEEVMQDGRTRDSGTIKRPVEENESSIRRKERDVRQEM 808

Query: 742  ERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNR 801
            ERN M   GREGS+P+RD D +L H   ++ EG+DR KEREN DG W RRE++  SRK+R
Sbjct: 809  ERNHMARKGREGSYPQRDLDTTLAHHPHVRNEGYDRHKERENPDGAWLRREEDQQSRKSR 868

Query: 802  IEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRE 861
             E++RKRER   +E+ +RHR K RE ER D++E+LHSRKQLDNG+YR HYDKD SSRHRE
Sbjct: 869  PEESRKRERG--EEMASRHRSKIREGERSDKEEHLHSRKQLDNGNYRIHYDKDGSSRHRE 926

Query: 862  RDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRR 921
            R+D+LK RY++VDDY SKRRKD+EYVRRDH +K+E+LHGHR+ TSRR+RERD++LD R+R
Sbjct: 927  REDTLKIRYDIVDDYHSKRRKDEEYVRRDHTDKEEMLHGHRETTSRRRRERDEVLDPRKR 986

Query: 922  EDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLK-PHEEILSKREREEGRGA 980
            EDQQR+R++ DD+H VRHKDE W QRERG+RQRERE+ +RLK  HEE LSKRE+EEGRG 
Sbjct: 987  EDQQRVRDSLDDYHSVRHKDELWPQRERGDRQREREELYRLKQSHEENLSKREKEEGRGT 1046

Query: 981  VRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGRED 1040
             R+GR ++D+AW+ +AR KDE++GS+KEYQ+KD  R+SEQ KRR+R+EDE    HR R+D
Sbjct: 1047 ARTGRGADDKAWINYAR-KDEFRGSEKEYQLKDAARNSEQQKRRDRVEDEGYSHHRARDD 1105

Query: 1041 VYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLV 1100
            VYAR NQ+ NE+R+SRQERS  R DR+ +T D  RVN++KHK++ RKN+ESE G+ ++L 
Sbjct: 1106 VYARTNQL-NEERRSRQERSSIRIDRAVHTPDKQRVNDRKHKDNMRKNKESEGGDRSTLG 1164

Query: 1101 ASKRNQEDQSGHVSEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSK 1160
             SKRNQEDQSGH  EMG+K + EQGN G    +  NSS++ KE+ASSD+E QDSRRGRSK
Sbjct: 1165 PSKRNQEDQSGHTGEMGLKGSAEQGN-GENMAMQRNSSKRHKEDASSDEEQQDSRRGRSK 1223

Query: 1161 LERWTSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMAD 1220
            LERWTSHKERD++INSKSS+SLKFKEI++N+N   LE +K  EE   A+  V+K  P+A+
Sbjct: 1224 LERWTSHKERDYSINSKSSASLKFKEIDRNNNSGPLEANKPLEEQPEAIHAVEKH-PLAE 1282

Query: 1221 KKDGSNPEN----TKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTK 1276
            ++D SN EN    TKP++D HLDTVEKLKKRSERFKLPMPSEKD L +KKMESE LPS K
Sbjct: 1283 ERDASNVENKDNDTKPLEDWHLDTVEKLKKRSERFKLPMPSEKDALVVKKMESEALPSVK 1342

Query: 1277 SETAAGSEIKQERPARKRRWISN 1299
            ++T    EIK ERPARKRRWIS+
Sbjct: 1343 TDTPVDLEIKPERPARKRRWISS 1365

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142409|ref|XP_002324551.1| predicted protein [Populus trichocarpa] gi|222865985|gb|EEF03116.1| predicted protein [Populus trichocarpa]

 Score = 1187 bits (3070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 767/1453 (52%), Positives = 945/1453 (65%), Gaps = 221/1453 (15%)

Query: 1    MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSND----HPASAP 56
            MEDDDEFGDLYTDVLRP S++  S  Q   +A +SLHRPIDL+  +K +D    H  S  
Sbjct: 1    MEDDDEFGDLYTDVLRPFSSSLSSAPQPL-SATSSLHRPIDLNDAIKDDDDDILHVVSHR 59

Query: 57   NSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNG-ISNDDDVPGIE 115
            N + P    P   + +F AP               V+V  D E    G I+ D D+    
Sbjct: 60   NPSAPSNQNPIE-ITAFSAP--------------QVRVLGDAESPIKGSIAEDRDL---- 100

Query: 116  IPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNH--RPM-LIDGGGG 172
                       +       G  G + E+D ESDSEDDLQIVLN+++H   PM +    G 
Sbjct: 101  -----------NFDIEDCGGGGGGDWEEDEESDSEDDLQIVLNDNSHPGGPMGIDREIGD 149

Query: 173  DDDDDEDGDPLVIVADADASNHQGLMVEEQEWGG-DDAPAQMGEGGAEKKEGTGERANGA 231
            DDDDDEDGDPLVIV D D  N     +EE++WGG +D  A +G GGAE     GER  G 
Sbjct: 150  DDDDDEDGDPLVIVTDGDGPNQ---AIEEKDWGGGEDGVAAVG-GGAE-----GERKEGG 200

Query: 232  AASA-ATAAAAAKIGYSNHFAYHNPYHSQFK----------------------------- 261
             A+    A    KIGY+NH  +H+P+HSQFK                             
Sbjct: 201  EATGKGNAVVGPKIGYNNHGYHHHPFHSQFKLEEVDSYEDENDRDIFIVDAWRALIAKHV 260

Query: 262  ------------YVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKT 309
                        YVRPGAA +P +      G PGQVRP +NM   AGRGRGDWRP G+K 
Sbjct: 261  SQCLNVSIKLIVYVRPGAALMPAAPIVGPGGTPGQVRPPMNMSTIAGRGRGDWRPVGIKG 320

Query: 310  APPMQKGFHPGFGMSASGVNMA-GRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDF 368
             P  QK FHPGFG  A G     G GLEF LPSHK IF+VDIDGFEEKPWKY GVD++D+
Sbjct: 321  GP--QKNFHPGFGGPAWGAGRGFGSGLEFMLPSHKMIFDVDIDGFEEKPWKYSGVDVSDY 378

Query: 369  FNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQ--------------------- 407
            FNFGLNEESWKDYCKQLEQ+RLETTMQSKIRVYESGR +                     
Sbjct: 379  FNFGLNEESWKDYCKQLEQYRLETTMQSKIRVYESGRAEQEFDPDLPPELAAATGFRDAP 438

Query: 408  ---------------------------PTGRAIQVEGGSGERLPSIDTRPPRIRDSDAII 440
                                       PTGRAIQVE G GER+PSI+ R PR+RDSDAII
Sbjct: 439  ADNSNAGKSDNAQSDWTKGSARFRAQIPTGRAIQVETGHGERIPSIEGRAPRLRDSDAII 498

Query: 441  E----------IVCQDSVDDDSSAGNGDRD--NDLP-REDRRGENDGAEDEMGPVDTEYF 487
            E          I+CQDS+DD SS G+G +D  ND P R+D RG +D AED+M   + EY 
Sbjct: 499  ECRVTESFFEQIICQDSLDD-SSTGDGVQDAANDEPQRDDFRG-SDVAEDDMAETENEYA 556

Query: 488  DGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRY-RPGSRGPTPKYPG 546
              F +AY+ R         P MN A  N+PEG+G+ PF PEA   Y   GSRG  P YPG
Sbjct: 557  GDFPQAYNDRKG----GRTPHMNSAR-NMPEGDGVSPFHPEATAPYPHAGSRGHPPSYPG 611

Query: 547  ENIGTSHE--------------------QRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDE 586
             + GT  E                    QR+  GR+ DRSP +TP+QS   +KF DN +E
Sbjct: 612  RDFGTPREERFRVSFEWFNGYRVEKELRQRQMQGRSRDRSPHLTPAQSSCDKKFVDNAEE 671

Query: 587  ESVESMEGKHSP-LSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEET--NAVTTS 643
            ES ESM GKHS  +SSP+ V+DARELS E KD    E +  +GSS + ++E   N  TT+
Sbjct: 672  ESTESMVGKHSLRVSSPITVQDARELSSEKKD--DPEPLQAEGSSRLGRDEMSENEETTN 729

Query: 644  DSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREG 703
            D+ KDG   +S + +K++S VEQP LQ+ D+EEDS+AARSSENSKARSGSS+D +KW++G
Sbjct: 730  DTPKDGNMHHSTRKQKVSSHVEQPALQQLDDEEDSKAARSSENSKARSGSSKDYQKWKDG 789

Query: 704  -DEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDP 762
             +EEV+Q  RSTR GS+++H +ENEQ+FRRKDR+ R EMER+R++  GRE S+PRRD DP
Sbjct: 790  VEEEVVQGGRSTRSGSIRRHLDENEQNFRRKDRDVRHEMERSRVIIRGREDSYPRRDLDP 849

Query: 763  SLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRG 822
            SL H + MK EG+DRRKERENSD  WQ+R+++P+S K+R ED   R+RE  DE+G+RHR 
Sbjct: 850  SLPHHLHMKHEGYDRRKERENSDISWQQRDEDPHSSKHRTED---RKRELGDEMGSRHRS 906

Query: 823  KARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRK 882
            K RE+ER D+DE+LH RKQL+NGSYR H+DKD SS+HRERDDSLKSR+EMVDDY SKRRK
Sbjct: 907  KIRETERSDKDEHLHPRKQLENGSYRIHHDKDGSSQHRERDDSLKSRFEMVDDYHSKRRK 966

Query: 883  DDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDE 942
            D+EY++R++A+K+EILHGHR+ TSRR+ ERDD         QQRIR+N D +H V+HKDE
Sbjct: 967  DEEYMKREYADKEEILHGHRENTSRRRHERDD---------QQRIRDNLDGYHSVKHKDE 1017

Query: 943  NW----SQRERGERQREREDWHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWVGHAR 997
             W        + +R+RERE+ +RLK  +EE L +REREEGR + RSGR  +D+AW GH R
Sbjct: 1018 VWLQRERGERQRQREREREELYRLKQSNEENLPRREREEGRASARSGRGVDDKAWAGHPR 1077

Query: 998  VKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQ 1057
             KDEYK SDK+YQ+KD VR SE  KRR+R+EDES   HR R+DVYARGNQ S+++R+SRQ
Sbjct: 1078 GKDEYKVSDKDYQLKDAVRSSEHQKRRDRMEDESLSHHRVRDDVYARGNQFSSDERRSRQ 1137

Query: 1058 ERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMG 1117
            ERS TR DR+ +TSDN RV+EKKHKE++RKN+ES+ G+H +L  S+RNQEDQSGH  EM 
Sbjct: 1138 ERSSTRIDRTLDTSDNQRVHEKKHKENTRKNKESDGGDHGTLGPSRRNQEDQSGHSDEMI 1197

Query: 1118 VKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSK 1177
            +K +   GN      +  NSS++ KE+ASSDDE +D RRGRSKLERWTSHKERD+NI SK
Sbjct: 1198 LKRSRAPGNGDAGISIQRNSSKRHKEDASSDDEQEDLRRGRSKLERWTSHKERDYNI-SK 1256

Query: 1178 SSSSLKFKEI--NKNSNGRTLETSKIPEEPATAVEPVDKQS--------PMADKKDGSNP 1227
            SS+SLKFKEI  N NSNGR+LE SK+P E    VE V+K++        P++++KD +  
Sbjct: 1257 SSASLKFKEIHRNSNSNGRSLEGSKLPNELPKKVEVVEKRTKVETVEKHPVSEEKDVAEV 1316

Query: 1228 EN----TKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGS 1283
             N     KP +DRHLDTVEKLKKRSERFKLPMP EKD LAIKKME+E LPS K ET A S
Sbjct: 1317 VNKDTDMKPSEDRHLDTVEKLKKRSERFKLPMPGEKDALAIKKMENEALPSVKPETPADS 1376

Query: 1284 EIKQERPARKRRW 1296
            EIK ERP RKRR+
Sbjct: 1377 EIKPERPPRKRRF 1389

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091696|ref|XP_002309330.1| predicted protein [Populus trichocarpa] gi|222855306|gb|EEE92853.1| predicted protein [Populus trichocarpa]

 Score = 1186 bits (3069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/1384 (53%), Positives = 935/1384 (67%), Gaps = 133/1384 (9%)

Query: 1    MEDDDEFGDLYTDVLRPLSAASQSPHQTSP--AAPTSLHRPIDLDLNLKSNDHPASAPNS 58
            MEDDDEFGDLYTDVLRP S++S S  Q +   +AP+ LHRPID++  +K +D      N 
Sbjct: 1    MEDDDEFGDLYTDVLRPFSSSSSSTPQPTQPLSAPSYLHRPIDINDAVKDDDDEILHGNP 60

Query: 59   TPPHTLAPTPPLPSFHAP-PRADTDGEF---TDNDNDVKVKFDIEEANNGISNDDDVPGI 114
              P T   +  + SF AP  R   D E        +D +V FDIEE N GI  D    G 
Sbjct: 61   PDP-TNQNSIQITSFSAPRIRVLGDAESPIKASIGDDTEVSFDIEEVNTGILEDS---GP 116

Query: 115  EIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDD----LQIVLNEDNHRPMLIDGG 170
             IPG++++     E      G  G     DW+ + E D    LQIVLN++ H P    G 
Sbjct: 117  IIPGLTEDDSRKMEASAEISGGGG-----DWQDEEESDSEDDLQIVLNDNTH-PGGTMGI 170

Query: 171  GGDDDDDEDGD----PLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAE--KKEGT 224
              +  DD+D D    PLVIVAD D  N     +EEQ+WGG +       GGAE  +KEG 
Sbjct: 171  DREIGDDDDDDEDGDPLVIVADGDGPNQ---AIEEQDWGGGEDGVAAAGGGAEGERKEG- 226

Query: 225  GERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQ 284
                 G A     A    KIG +          +  KYVRPGAAP+P + +    G PGQ
Sbjct: 227  -----GEAVGKGNAVVGPKIGGNAVVG------TAEKYVRPGAAPMPAATSVGPGGTPGQ 275

Query: 285  VRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMA-GRGLEFTLPSHK 343
            VRP +NMG  AGRGRGDWRP G+K AP  QK FHPGFG SA G     G G+EFTLPSHK
Sbjct: 276  VRPPMNMGAMAGRGRGDWRPVGIKGAP--QKNFHPGFGGSAWGAGRGFGSGMEFTLPSHK 333

Query: 344  TIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYES 403
            TIF+ DIDGFEEKPWKYPGVDI+D+FNFGLNEESWKDYCKQLEQ+RLETTMQSKIRVYES
Sbjct: 334  TIFDFDIDGFEEKPWKYPGVDISDYFNFGLNEESWKDYCKQLEQYRLETTMQSKIRVYES 393

Query: 404  GRDQ-----------------------------------------------PTGRAIQVE 416
            GR +                                               PTGRAIQVE
Sbjct: 394  GRAEQEYDPDLPPELAAATGFHATADNSNAGKSDIGQSDLAKGSARMRPQIPTGRAIQVE 453

Query: 417  GGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSA-GNGDRDNDLPREDRRGENDGA 475
             G GER+PSI+ R PR+RDSDAIIEIVCQ S++D     G  D  ++ P++D    +D +
Sbjct: 454  TGYGERIPSIEGRAPRLRDSDAIIEIVCQGSLEDSPPRDGVQDGAHNDPQKDDFKVSDAS 513

Query: 476  EDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRY-R 534
            ED+M   + EY  GF +AY+ R         P+MN AH N+ EG+ +LP  P+AP  Y +
Sbjct: 514  EDDMEQTENEYAGGFPQAYNGRKGG---RRTPYMNSAH-NMSEGD-VLPIHPKAPAPYHQ 568

Query: 535  PGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEG 594
             GSRG  P YPG   GT HE+RR  GR+ D SP +TPSQ+ + +KF D+ +EES ESM+ 
Sbjct: 569  TGSRGHPPSYPGRESGTPHEERRMQGRSCDSSPHLTPSQNSRDKKFLDDVEEESTESMDD 628

Query: 595  KHSP-LSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALY 653
            K SP +SSP+ VRDARELS E KD V  E +  + SS + ++E      + + KDG   +
Sbjct: 629  KLSPRISSPITVRDARELSSEEKDDV--EPLQAEESSRLGRDEMTENEETANDKDGNVHH 686

Query: 654  SPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREG-DEEVMQDRR 712
            S + +K++S VEQP LQ+ D+EEDS+AARSSENSKARSGSS+D +KW++G +EEV+QDRR
Sbjct: 687  STRKQKVSSHVEQPALQQLDDEEDSKAARSSENSKARSGSSKDYQKWQDGVEEEVVQDRR 746

Query: 713  STRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKP 772
            STR GS+++H +ENEQ+F+RKDR+ R+EMERNR V  GRE S+P RD DPSL H + MK 
Sbjct: 747  STRSGSIRRHLDENEQNFQRKDRDVRREMERNRGVIRGREDSYPHRDLDPSLPHHLHMKH 806

Query: 773  EGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDR 832
            E +D+RKEREN D  WQ+R+++P+SRK+R ED   R+REH DE+G+RHRGK RE+ER D+
Sbjct: 807  ESYDKRKERENPDISWQQRDEDPHSRKHRTED---RKREHGDEMGSRHRGKIRETERSDK 863

Query: 833  DEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHA 892
            DE+LHSRKQL+NGSYR H+DKD SSRHRERDD+LKSR+EMVDDY SKRRKD+EYV+R++A
Sbjct: 864  DEHLHSRKQLENGSYRIHHDKDGSSRHRERDDNLKSRFEMVDDYHSKRRKDEEYVKREYA 923

Query: 893  EKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENW----SQRE 948
            +K+EILHGHR+ TSRR+ ERD         DQQRIR+N D +H V+HKDE W        
Sbjct: 924  DKEEILHGHRENTSRRRHERD---------DQQRIRDNLDGYHSVKHKDEVWLQRERGER 974

Query: 949  RGERQREREDWHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDK 1007
            + +R+RERE+ +R+K   EE L KREREEGR + RSGR  +D+AW GHA  KDEYK SDK
Sbjct: 975  QRQREREREELYRVKQSSEENLPKREREEGRASARSGRVVDDKAWAGHAWGKDEYKVSDK 1034

Query: 1008 EYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRS 1067
            EYQ+KDTVR SE  KRR+R+EDES   HRG++DVYARGNQ SNE+R+SRQERS +R DR+
Sbjct: 1035 EYQLKDTVRISEHQKRRDRMEDESLSHHRGQDDVYARGNQFSNEERRSRQERSSSRVDRT 1094

Query: 1068 ANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMGVKDTHEQGNC 1127
             +TS + RV+EKKHKE+ RKN+ES+ G+H +   SKRNQ++ +GH  E  +K + E G+ 
Sbjct: 1095 VDTSVSQRVHEKKHKENPRKNKESD-GDHGTWGPSKRNQDNLNGHSDETVLKRSREPGSR 1153

Query: 1128 GNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKEI 1187
              E  +  NSS++ K+ ASSDDE QDSRRGRSKLERWTSHKERD+NI SK+S+SLKFKE 
Sbjct: 1154 EAEILMQLNSSKRLKKNASSDDEQQDSRRGRSKLERWTSHKERDYNI-SKASASLKFKET 1212

Query: 1188 NKNSNGRTLETSKIPEEPATAVEPVDKQSPM--------ADKKDGSNPEN----TKPVDD 1235
            ++N+NG +L+ SK+ +EP   VE V+KQ+ +         ++KD ++ EN    TKP  D
Sbjct: 1213 DRNNNGGSLQGSKLSDEPPKKVETVEKQAKIETVEKHCTGEEKDVADAENKDTDTKPSGD 1272

Query: 1236 RHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQERPARKRR 1295
            RHLDTVEKLKKRSERFKLPMPSEKD  ++KKMESE +PS K ET A SEIK ERP RKRR
Sbjct: 1273 RHLDTVEKLKKRSERFKLPMPSEKDAFSVKKMESEAVPSVKPETPADSEIKPERPPRKRR 1332

Query: 1296 WISN 1299
            WISN
Sbjct: 1333 WISN 1336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457917|ref|XP_004146694.1| PREDICTED: uncharacterized protein LOC101212971 [Cucumis sativus]

 Score = 1125 bits (2909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 734/1443 (50%), Positives = 917/1443 (63%), Gaps = 189/1443 (13%)

Query: 1    MEDDDEFGDLYTDVLRPLSAASQS--PH-QTSPAAPTSLHRPIDLDLNLKSNDHPASA-- 55
            MEDDDEFGDLYTDVLRP +++S S  P  Q S +AP  L RPIDL+ +    + P  A  
Sbjct: 1    MEDDDEFGDLYTDVLRPFASSSSSSVPQPQLSSSAPPPLQRPIDLNRHHDDENPPFGASY 60

Query: 56   ---------PNSTPPHTLAP----TPPLPSF----HAPPRADTDG-------EFTDND-- 89
                     P  TPP  L P    TP   SF    +   R D DG       +F   D  
Sbjct: 61   SNSRVPLQFPKETPP--LQPPRESTPVAGSFGFVLNLAARNDGDGSRVKGSEDFASVDVE 118

Query: 90   ---------------------------NDVKVKFDIEEANNGISNDDD----VPG----- 113
                                        D  VKFDIEE N G+ +D      +PG     
Sbjct: 119  LPNRGLEDRNFGVESGIVGGLEKDVNLMDKDVKFDIEEGNAGVEDDVGGEPIIPGLSPSG 178

Query: 114  -IEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDD-LQIVLNEDNHRPMLIDGGG 171
             I I G S N +EN E    N+         D      +D LQI+LN+ +  PM ++ GG
Sbjct: 179  GISIHGTSGN-LENPEGFRMNDASRDRGDGGDDWDSDSEDDLQILLNDSDRGPMAMERGG 237

Query: 172  GDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGA 231
               DD ED  PLVI+ D    N Q  ++EEQEWG D  P   GE    +KE TGE    A
Sbjct: 238  LVGDD-EDEPPLVILGD----NDQNQVMEEQEWGDDTVPTADGE----RKE-TGE----A 283

Query: 232  AASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNM 291
            A S+A    A K+GYSN + Y  P+HSQ+KYVRPGAAP PG++ +   G P QVRPLVNM
Sbjct: 284  AKSSAGMVVAPKLGYSN-YGYR-PFHSQYKYVRPGAAPFPGTSASGPGGTPTQVRPLVNM 341

Query: 292  GPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGR---GLEFTLPSHKTIFEV 348
            GP  GRGRGDWRP G K    +QKGFH GFGM     NM GR   GLEFTLPSHKTIFEV
Sbjct: 342  GPVGGRGRGDWRPTGPKDPASVQKGFHSGFGMPGWSNNMGGRSFGGLEFTLPSHKTIFEV 401

Query: 349  DIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQ- 407
            DID FEEKPWK  GVD++DFFNFGLNE+SWK+YCKQLEQ RLE TMQSKIRVYESGR + 
Sbjct: 402  DIDSFEEKPWKSTGVDVSDFFNFGLNEDSWKEYCKQLEQLRLEATMQSKIRVYESGRTEQ 461

Query: 408  ----------------------------------------------PTGRAIQVEGGSGE 421
                                                          P GRAIQVEGG GE
Sbjct: 462  GYDPDLPPELAAAAGIHDIPNEHTLGKSDGLQNDVGKGVPRVRPPLPAGRAIQVEGGYGE 521

Query: 422  RLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNG--DRDNDLP-----REDRRGENDG 474
            RLPSIDTRPPRIRDSDAIIEIV QDS+DD+SS GN   +  ND P     +E    E+D 
Sbjct: 522  RLPSIDTRPPRIRDSDAIIEIVLQDSLDDNSSTGNCTPNEPNDDPSGKDFKEIHEAEDDD 581

Query: 475  AEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYR 534
            A+ E    DTEY D F E ++S   E V      MN   DN  E   L  F  E P  + 
Sbjct: 582  AQIES---DTEYPDDFSETHNSELTEKVGRRKTSMNSPSDNTREDVNLA-FTSEGP-GHH 636

Query: 535  PGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEG 594
            P SRG TP Y  +N+G   E+RR  GRT ++SP  +P Q+ Q RK  D+Q+E SVESM+ 
Sbjct: 637  PTSRGNTPAYSAQNLGIV-EERRSQGRTYNKSPH-SPRQNLQDRKSPDSQEEGSVESMDD 694

Query: 595  KHSP-LSSPVIVRDARELSVEHKDAVHDE------LVLGDGSSAVEKEETNAVTTSDSRK 647
            K SP +SSP IV   +E S E KDA HDE      L+  D ++ +++E  N ++TS++RK
Sbjct: 695  KRSPQVSSPAIVEATQEYSAEDKDAEHDEDAEHDELIEADKNTEIDRENVNFISTSNTRK 754

Query: 648  ---DGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREG- 703
               D + + +   +K++  VE   L+E D +EDS+AA SSEN K RSGSSRD  KW++G 
Sbjct: 755  IESDDEEMEN--NEKLSPIVEALMLKE-DGDEDSKAA-SSENRKTRSGSSRDYPKWQDGV 810

Query: 704  DEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPS 763
            +EEV Q+RRS+ MGS+KK+ +ENEQ+FRRKD + +Q+ ERNRM   GR+ ++  RD+DPS
Sbjct: 811  EEEVFQNRRSSSMGSVKKYMDENEQNFRRKDSDDKQD-ERNRMDVKGRKDAYAYRDWDPS 869

Query: 764  LTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGK 823
            L H   +K +GFDRRKER N++  WQRR+D+PY RK R E+TRKRE +  DE G+RHR K
Sbjct: 870  LAHQHPLKTDGFDRRKERSNAEATWQRRDDDPYYRKTRTEETRKREYD--DETGSRHRSK 927

Query: 824  ARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKD 883
             RE ER D+DE  H  K+LDNGSYR HYDK ASSRHRERDDSLKSRYE  D Y +K+RKD
Sbjct: 928  IREIERSDKDER-HLTKKLDNGSYRAHYDKGASSRHRERDDSLKSRYENADSYYNKKRKD 986

Query: 884  DEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDEN 943
            +E++RR+H EK+EILHG R+  S RKRERD++ + ++R++  R+R+N  DHH V HK+E 
Sbjct: 987  EEHLRREHVEKEEILHGKREGKSHRKRERDEVFEPQKRDELLRVRDNIGDHHIVGHKEE- 1045

Query: 944  WSQRERGERQREREDWHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEY 1002
            W QRER +R R++EDWHR K   EE LSKR+R+EGR ++RSG  +E++AW  H RVKDE 
Sbjct: 1046 WLQRERSDRPRDKEDWHRPKQSREENLSKRDRDEGRSSIRSGHGAEEKAWGSHVRVKDEN 1105

Query: 1003 KGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGT 1062
            K S+KEY  KD VRHSEQ KRR+R+E+ES    RGRED Y+R N  S EDR+SR E+S +
Sbjct: 1106 KVSEKEYPGKD-VRHSEQNKRRDRMEEESS--RRGREDSYSRRNPPSTEDRRSRLEKSSS 1162

Query: 1063 RNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMGVKDTH 1122
                +AN  DN R+++K+HK+S  KNRE +  +HN+L  SK++QE+Q+ + S+M +K + 
Sbjct: 1163 ER-HAANAFDNQRIHDKRHKDSKMKNREVDGSDHNALGPSKKSQENQNSYRSQMVLKGSD 1221

Query: 1123 EQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSL 1182
            + G+   E  VH + SRK  ++AS+DDE +DSRRGRSKLERWTSHKERDFNINSKS+S  
Sbjct: 1222 DHGDP--EHSVHHHGSRKHTDDASTDDEQRDSRRGRSKLERWTSHKERDFNINSKSASLP 1279

Query: 1183 KFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGSNPE------NTKPVDDR 1236
              KEI +N+NG + E +K P++   A E VD    +A+KK+  + E      +TK ++DR
Sbjct: 1280 --KEI-ENNNGGSSEANKNPDDSMKATETVDNHH-LAEKKESGDIEPKGGVSDTKVLEDR 1335

Query: 1237 HLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQERPARKRRW 1296
            H+DTVEKLKKRSERFKLPMPSEK+ L IKKMESEPLPS+KSE  A SEIK ERPARKRRW
Sbjct: 1336 HMDTVEKLKKRSERFKLPMPSEKEALVIKKMESEPLPSSKSEAPADSEIKPERPARKRRW 1395

Query: 1297 ISN 1299
            IS+
Sbjct: 1396 ISS 1398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147863604|emb|CAN81922.1| hypothetical protein VITISV_010335 [Vitis vinifera]

 Score = 1086 bits (2809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1089 (57%), Positives = 747/1089 (68%), Gaps = 140/1089 (12%)

Query: 344  TIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYES 403
            TIF+VDID FEEKPW++PGVDI+DFFNFG NEESWK YCKQLEQ RLE TMQ+KIRVYES
Sbjct: 62   TIFDVDIDSFEEKPWRHPGVDISDFFNFGFNEESWKQYCKQLEQLRLEATMQTKIRVYES 121

Query: 404  GRDQ------------------------------------------------PTGRAIQV 415
            GR +                                                PTGRAIQV
Sbjct: 122  GRTEQEYDPDLPPELAAAVGIHDVSAENGNLGRADVGPSDLAKASARVRPPIPTGRAIQV 181

Query: 416  EGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDR---DNDLPREDRRGEN 472
            EGG GERLPS+DTRPPR+RDSDAIIEI  Q S+DDDS  GNG     DNDLPRED R  N
Sbjct: 182  EGGCGERLPSVDTRPPRVRDSDAIIEITLQGSLDDDSPTGNGAPEPPDNDLPREDLRVGN 241

Query: 473  DGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLR 532
            +  ED+    DTEYFD F   Y  RNRELV   APFMN   D++P G+G+LPFPPEAP++
Sbjct: 242  E-VEDDAAQEDTEYFDSFSTTYSGRNRELVGRSAPFMNSLRDDMPGGDGILPFPPEAPVQ 300

Query: 533  YRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESM 592
            YRPGSRG  P +PG N GT HE RR  GR   +SP MTP QS +  +F D+Q EESVESM
Sbjct: 301  YRPGSRGQDPVHPGGNFGTPHEDRRIRGRAHGKSPHMTPIQSTRDNRFLDSQKEESVESM 360

Query: 593  EGKHSPLSSPVIVRDARELSVEHKDAVHDEL----------------------------- 623
            + K    SSPV V   RE SVE KDAVHDE+                             
Sbjct: 361  DVK-GMTSSPVRVAPPREPSVEKKDAVHDEIELADGMEREELTSDIIVTTDTSKVGNSVQ 419

Query: 624  -----------------------VLGDGSSAVEKEE--TNAVTTSDSRKDGKALYSPKTK 658
                                   VL DG+S +E+EE  +N +T++D+ KD   +   K +
Sbjct: 420  SGKKQKLSSRVEQPPPQELDGGIVLADGTSGMEREELTSNTMTSTDALKDENLIPFGKKQ 479

Query: 659  KINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREG-DEEVMQDRRSTRMG 717
            K++S+VEQP  QE D +ED +A RSSENSKARS SSRD +KW +G +EEV++D  S RMG
Sbjct: 480  KLSSRVEQPPPQELDGDEDLKATRSSENSKARSESSRDLQKWHDGGEEEVIEDGSSVRMG 539

Query: 718  SMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDR 777
            + K+H +E+EQSFRRKDR+GRQEMER+RMV  GRE ++P RD+D    H   +K + FDR
Sbjct: 540  NSKRHLDEDEQSFRRKDRDGRQEMERSRMVVKGREDTYPHRDWDSIPNHHSHVKTDSFDR 599

Query: 778  RKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLH 837
            RKER++SDG WQRR+D+ + R+ R ED RK+ER   DE+G+RHR K RESER ++DE LH
Sbjct: 600  RKERDSSDGGWQRRDDDLHGRRIRPEDARKQERG--DEMGSRHRSKVRESERSNKDELLH 657

Query: 838  SRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEI 897
            SRK LDNGS+R H DKD  SRHRERDD+LKSRY  +DD   KRRKD+EY+RRDHAEK+E 
Sbjct: 658  SRKLLDNGSWRGHQDKDMGSRHRERDDNLKSRYGNLDDLHGKRRKDEEYLRRDHAEKEET 717

Query: 898  LHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQRERE 957
            LH HR+  SRRKRERDD+LDQR+R+DQ RIR+N DDHH VRHKDE W QRERGERQRERE
Sbjct: 718  LHSHRESASRRKRERDDVLDQRKRDDQPRIRDNLDDHHSVRHKDEGWMQRERGERQRERE 777

Query: 958  DWHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVR 1016
            +WHRL+ PHEE LSKREREEGRGAVRSGR +ED+AWV HAR KDEYKGSDK+YQ KDT R
Sbjct: 778  EWHRLRQPHEENLSKREREEGRGAVRSGRGAEDKAWVSHARGKDEYKGSDKDYQYKDTGR 837

Query: 1017 HSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRV 1076
            HSEQ KRR+R+EDES   HRGREDVYARG+Q SNE+R+SRQERS  RND SAN SD+ RV
Sbjct: 838  HSEQPKRRDRVEDESFSHHRGREDVYARGSQFSNEERRSRQERSSARNDHSANASDHQRV 897

Query: 1077 NEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMGV------------------ 1118
            ++KKHKE++RKN+ESE  + ++L  SKRNQED +   +E G                   
Sbjct: 898  HDKKHKENTRKNKESEGADISTLGPSKRNQEDHNSQRNETGAPSIAPMRPFLGLARHFGK 957

Query: 1119 -------KDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERD 1171
                   K T EQGN  +E  VH   SRK +E+ASSDDE QDS+RGRSKLERWTSHKERD
Sbjct: 958  YNSEVISKGTSEQGNGEHEILVH-RQSRKHREDASSDDEQQDSKRGRSKLERWTSHKERD 1016

Query: 1172 FNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGS---NPE 1228
            +N+N K SSS+K KEI +N++G +  T K P+E A  VE VD Q  + +K  G       
Sbjct: 1017 YNLNIKPSSSIKVKEIERNNSGGSPLTGKFPDESAKTVEAVDSQQHVEEKDAGDLELKDA 1076

Query: 1229 NTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQE 1288
            + KP++DRHLDTV KLKKRSERFKLPMPSEK+ +A+KK+ SE LP   +ET A SEIKQE
Sbjct: 1077 DMKPMEDRHLDTVAKLKKRSERFKLPMPSEKEAVAVKKVGSEALPPAPTETPADSEIKQE 1136

Query: 1289 RPARKRRWI 1297
            RPARKRRWI
Sbjct: 1137 RPARKRRWI 1145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533011|ref|XP_003535062.1| PREDICTED: uncharacterized protein LOC100803769 [Glycine max]

 Score = 1046 bits (2706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 691/1400 (49%), Positives = 898/1400 (64%), Gaps = 185/1400 (13%)

Query: 1    MEDDDEFGDLYTDVLRPLSAA------SQSPHQTSPAAPTSLHRPIDLDLNLKSN----D 50
            MEDDDEFGDLYTDVLRP +++      +Q  HQ SPA P+       LDLNL  N     
Sbjct: 1    MEDDDEFGDLYTDVLRPFASSSPSSSSAQQLHQLSPAPPS-------LDLNLNPNPDAAQ 53

Query: 51   HPASAPNS-TPPHT-----------------LAPTPPLP--SFHAPPRADTDGEFTDNDN 90
             P  AP++ +P  T                 +    PLP  +  A   A  D      D 
Sbjct: 54   IPCDAPHTYSPAPTNPLPEPDPREPPPESPKIPDAEPLPDSNLVAAVVAGVD----PMDR 109

Query: 91   DVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSE 150
            +VK   + ++ + G   D     + IPG+S  +          EGE  +       SDSE
Sbjct: 110  EVKFDIEEDDDDGGCGGDVVGETV-IPGLSGEAAAAVP----PEGEGDDWD-----SDSE 159

Query: 151  DDLQIVLNEDNHRPMLIDGGG---GDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGD 207
            DDL+IVLNE+NH  M ++ GG   GD+++++  + LVIVA  D   +QG  VEE EWG +
Sbjct: 160  DDLKIVLNENNH--MAMERGGVADGDEEEEDGDEELVIVAGGDL--NQG--VEEPEWGEN 213

Query: 208  DAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGA 267
               A +  G  ++K+  GE      A    AA   KIGYSNH  YH P+HS FKYVRPGA
Sbjct: 214  ---AALAAGDGDRKDAAGE-----LAKVGGAAVPPKIGYSNH-GYH-PFHSPFKYVRPGA 263

Query: 268  APIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASG 327
            A +PG+A +   G PGQ+RPL NM   AGRGRG+WRP G+K    MQKGFH G G+   G
Sbjct: 264  ALMPGAAASAPGGPPGQIRPLANM---AGRGRGEWRPPGIKGGAAMQKGFHAGPGLPGWG 320

Query: 328  VNMAGRG----LEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCK 383
             + AGRG    LEFTLPSHKTIF+V+I+ FEEKPWKYP VDI+DFFNFGLNEESWKDYCK
Sbjct: 321  SSAAGRGFGGGLEFTLPSHKTIFDVEIENFEEKPWKYPNVDISDFFNFGLNEESWKDYCK 380

Query: 384  QLEQHRLETTMQSKIRVYESGRDQ------------------------------------ 407
            QLEQ RLE+TMQSKIRVYESGR +                                    
Sbjct: 381  QLEQLRLESTMQSKIRVYESGRTEQEYDPDLPPELAAATGIHDVPGEHTNSLKSDVGQSD 440

Query: 408  --------------PTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSS 453
                          PTGRAIQVEGG G+RLPSIDTRPPRIRDSDAIIEIV QD+ DD+SS
Sbjct: 441  VMKGSGTGRVRPPLPTGRAIQVEGGYGDRLPSIDTRPPRIRDSDAIIEIVLQDTEDDESS 500

Query: 454  AGNGD---RDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMN 510
            AG         D  RED R E+  A DE+  ++ +YFDGF + Y+ R +E+     PF+N
Sbjct: 501  AGIAQDPPESGDPHREDFR-EDHVAGDEIPRLEPKYFDGFPQDYNGRKKEIAGRRMPFIN 559

Query: 511  VAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMT 570
                N+P G+  L FP E P+ Y  GSRG   +  G N  +SH++R+   R   +SP + 
Sbjct: 560  SCAANMPNGDEKLFFPQEEPIEYS-GSRGQNRRNYGGNFSSSHDERQMQRRVRGQSPPII 618

Query: 571  PSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSS 630
            P Q        ++Q EES ESMEG+H   SSP  V+D  E SVE+KD   ++    DGSS
Sbjct: 619  PIQELAT---DNSQKEESAESMEGRHR--SSPA-VKDVGESSVEYKDIELEDTETADGSS 672

Query: 631  AVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEE-EDSRAARSSENSKA 689
             +EKEET  V   D+ +DG A    K +K+ SQVE P   E D++ EDS+AA+SS+NSKA
Sbjct: 673  RLEKEET--VDRVDTLEDGVA----KRQKVTSQVEPPLPDEVDDDWEDSKAAKSSDNSKA 726

Query: 690  RSGSSRDNKKWREG-DEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVA 748
            RS SSRDN+K +EG +EEV+QD +S  +GS+++HP+E E  F +++ + +QE ERNRM+ 
Sbjct: 727  RSASSRDNQKRQEGFEEEVVQDPQSAHLGSIRQHPDEIEPGFYKREHDAKQEPERNRMML 786

Query: 749  IGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKR 808
             GRE S+P +D  PS    +    +GFD +KER+NS+  W RR+D+ Y+R+ R ++ RKR
Sbjct: 787  KGRERSYPYKDRHPSSAPQLHANTDGFDGQKERDNSEMDWARRDDDLYNRRVRNDEPRKR 846

Query: 809  EREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSR---HRERDDS 865
            +R            K RE+ER D+++ LHSRKQLDNGSYR  Y+KD  SR   HRERD+ 
Sbjct: 847  DR-----------AKVRENERNDKEDSLHSRKQLDNGSYRVLYEKDVGSRDSRHRERDEG 895

Query: 866  LKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQ 925
            L+ RYE V+DY  KRRKD+EY+RR+H +K+E+LHG+R+  SRR+RERD++LD R+R+D Q
Sbjct: 896  LRIRYEAVEDYRGKRRKDEEYLRREHIDKEEVLHGYRENASRRRRERDEVLDPRKRDDLQ 955

Query: 926  RIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLK-PHEEILSKREREEGRGAVRSG 984
            R R+N DD +  R KD+ W  RERG+RQR+RE+WHR+K  HEE L KREREEGR +VRSG
Sbjct: 956  RARDNPDDQYATRQKDDAWVPRERGDRQRDREEWHRMKQSHEEHLPKREREEGRSSVRSG 1015

Query: 985  RSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYAR 1044
            R +             E+K S+KEYQ ++ +R ++QLKRR+RI+DES P H+GR+D  AR
Sbjct: 1016 RGA-------------EHKLSEKEYQSREAMRQNDQLKRRDRIQDES-PHHKGRDDASAR 1061

Query: 1045 GNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKR 1104
            GNQ + E+R+SRQERS +R+DR AN SDN +V   KH+E SRK++E +V + NSL  SKR
Sbjct: 1062 GNQYTTEERRSRQERSSSRSDRVANFSDNQKV---KHREGSRKSKERDVSDLNSLGLSKR 1118

Query: 1105 NQEDQSGHVSEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERW 1164
            +QE+Q G  +E G+K + ++    +E P H   SRK++E+ SSDDE QDSRRGRSKLERW
Sbjct: 1119 SQENQIGPTNEKGLKGSGDEERAEHEIPGH-RLSRKQREDMSSDDEQQDSRRGRSKLERW 1177

Query: 1165 TSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDG 1224
            TSHKERDF++N KSSSSLK+K+I+K++N  + E  K  +EPA  V+  ++   +A+ +D 
Sbjct: 1178 TSHKERDFSVN-KSSSSLKYKDIDKDNNDGSSEAGKPADEPAKTVDVDNQHLLLAEARDS 1236

Query: 1225 SNPEN----TKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSET- 1279
            ++ EN    TK + DRHLDTVE+LKKRSERFKLPMPSEK+TL IKK+ESEPLPS KSE  
Sbjct: 1237 ADMENRDADTKELGDRHLDTVERLKKRSERFKLPMPSEKETLVIKKLESEPLPSAKSENP 1296

Query: 1280 AAGSEIKQERPARKRRWISN 1299
               SE+KQERPARKRRW++N
Sbjct: 1297 VVDSEVKQERPARKRRWVTN 1316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554872|ref|XP_003545766.1| PREDICTED: uncharacterized protein LOC100799266 [Glycine max]

 Score = 1026 bits (2654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1394 (49%), Positives = 886/1394 (63%), Gaps = 187/1394 (13%)

Query: 1    MEDDDEFGDLYTDVLRPLSAASQS-----PHQTSPAAPTSLHRPIDLDLNLKSNDHPASA 55
            MEDDDEFGDLYTDVLRP +++        PHQ SPA P+     +DL  N      P  A
Sbjct: 1    MEDDDEFGDLYTDVLRPFASSPSLSSAPQPHQPSPAPPS-----LDLSPNPDDAQIPCDA 55

Query: 56   PNSTPPHTLAPTPPLP------SFHAPPRADTDGEFTDND----------NDVKVKFDIE 99
            P++  P   APT PLP      +   PP+       TD++           D +VKFDIE
Sbjct: 56   PHANSP---APTNPLPEPDPREAPTEPPKIPDAKPTTDSNLAAAAVAVDPMDREVKFDIE 112

Query: 100  EANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNE 159
            E               IPG++       E     EGE  +       SDSEDDL+IVLNE
Sbjct: 113  EDEEDGGEP------VIPGLT------GELAAPTEGEGDDWD-----SDSEDDLKIVLNE 155

Query: 160  DNHRPMLIDGGG---GDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEG 216
            +NH  M ++ GG   GD+++++  + LVIVA  D   +QG   EE EWG +   A +  G
Sbjct: 156  NNH--MAMERGGMADGDEEEEDGDEELVIVAGGDP--NQG--AEEPEWGEN---ATLAAG 206

Query: 217  GAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATA 276
              E+K+  GE      A A  AA   KIGYSN   YH P+HS FKYVRPGAA +PG+A +
Sbjct: 207  DGERKDAAGE-----LAKAGGAAVPPKIGYSNQ-GYH-PFHSPFKYVRPGAALMPGAAAS 259

Query: 277  VAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGM----SASGVNMAG 332
               G PGQ+RPL NM   AGRGRGDWRP G+K    MQKGFH G G+    + +     G
Sbjct: 260  APGGPPGQIRPLANM---AGRGRGDWRPPGIKGGAAMQKGFHAGPGLPGWGNGAAGRGFG 316

Query: 333  RGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLET 392
             GLEFTLPSHKTIF+VDI+ FEEKPW+YP +D +DFFNFGLNEESWKDYCKQLEQ RLE+
Sbjct: 317  GGLEFTLPSHKTIFDVDIENFEEKPWQYPNIDTSDFFNFGLNEESWKDYCKQLEQLRLES 376

Query: 393  TMQSKIRVYESGRDQ--------------------------------------------- 407
            TMQSKIRVYESGR +                                             
Sbjct: 377  TMQSKIRVYESGRTEQEYDPDLPPELAAATGIHDSPVENTNSLKSDVGQSDVMKGSGTGR 436

Query: 408  -----PTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDND 462
                 PTGRAIQVEGG G+RLPSIDTRPPRIRDSDAIIEIV QD+ DD SSAG      D
Sbjct: 437  VRPPLPTGRAIQVEGGYGDRLPSIDTRPPRIRDSDAIIEIVLQDTEDDQSSAGVA---QD 493

Query: 463  LP------REDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNI 516
             P      RED R E+  A DE+  ++ EYFDGF + Y+ R +E+      F+N +  N+
Sbjct: 494  PPEGGEPHREDFR-EDHVAGDEIPRLEPEYFDGFPQVYNGRKKEIAGRRMSFINSSAANM 552

Query: 517  PEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQ 576
            P G+  L FP E P+ Y  GS+G   +  G N  +SH++R+   R G +SP +TP Q   
Sbjct: 553  PNGDEKLFFPQEEPIEYS-GSKGQNRRSYGGNCSSSHDERQMQRRVGGQSPSITPIQELA 611

Query: 577  IRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEE 636
                 ++  EES ESMEG+H   SSP  V+D RE SVE KD   ++    DGSS +EKEE
Sbjct: 612  T---DNSLKEESAESMEGRHR--SSPA-VKDIRESSVEEKDIELEDTGTADGSSRLEKEE 665

Query: 637  TNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRD 696
            T  V   D+ +DG A    K +K+ S+VE P L E D+ EDS+AA+SS+NSKARS SSRD
Sbjct: 666  T--VDKVDALEDGVA----KRQKLTSRVEPPLLDEVDDWEDSKAAKSSDNSKARSASSRD 719

Query: 697  NKKWREG-DEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSH 755
            N+K REG +EEV+QD RS ++ S+++HP+E EQ F R++ + +QE  RN M+  GRE  +
Sbjct: 720  NQKRREGFEEEVVQDPRSAQLSSIRQHPDEIEQGFYRREHDAKQEPGRNLMMLKGRERPY 779

Query: 756  PRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDE 815
            P +D  PS    +    +GFD +KER+NS+  W RR+D+ Y+R+ R ++ RKR+      
Sbjct: 780  PYKDRHPSSATQLNTNADGFDGQKERDNSEMDWSRRDDDLYNRRVRNDEPRKRD------ 833

Query: 816  IGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDAS---SRHRERDDSLKSRYEM 872
                 R K RE+E+ D+++ LHSRKQLDNGSYR  Y+KD     SR RERD+ L+ RYE 
Sbjct: 834  -----RAKVRENEKNDKEDSLHSRKQLDNGSYRVSYEKDVGSRDSRQRERDEGLRIRYEA 888

Query: 873  VDDYISKRRKDDEYVRRDHAEKDEILHGHRDL-TSRRKRERDDILDQRRREDQQRIRENF 931
            V+DY  K+RKD+EY+RR+H +K+E+LHG+R++ +SRR+RERD++LD R+R+D QR R+N 
Sbjct: 889  VEDYRGKKRKDEEYLRREHIDKEEVLHGYREIASSRRRRERDEVLDPRKRDDLQRARDNP 948

Query: 932  DDHHPVRHKDENWSQRERGERQREREDWHRLK-PHEEILSKREREEGRGAVRSGRSSEDR 990
            DD +  R KDE W  +ERG+RQR+RE+W R+K  HEE L KRER EGR +VRSGR +   
Sbjct: 949  DDQYATRQKDEAWVLKERGDRQRDREEWCRMKQSHEEHLPKRER-EGRSSVRSGRGA--- 1004

Query: 991  AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISN 1050
                      E+K S+KEYQ ++ +RH++QLKRR+RI+DES P H+GR+D  ARGNQ + 
Sbjct: 1005 ----------EHKLSEKEYQSREAMRHNDQLKRRDRIQDES-PHHKGRDDASARGNQYTT 1053

Query: 1051 EDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQS 1110
            E+R+SR ERS +R+DR AN SDN +V   KH+E SRK++E +V + NSL  SKR+QE+QS
Sbjct: 1054 EERRSRLERSSSRSDRVANVSDNQKV---KHREGSRKSKERDVSDLNSLGLSKRSQENQS 1110

Query: 1111 GHVSEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKER 1170
            G  +E G+K + ++    +E   H   SRK++E+ SSDDE QDSRRGRSKLERWTSHKER
Sbjct: 1111 GPTNEKGLKGSGDEERAEHEISGH-RLSRKQREDMSSDDEQQDSRRGRSKLERWTSHKER 1169

Query: 1171 DFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGSNPEN- 1229
            DFN+N KSSSSLKFK+I+K++N  + E  K   EPA  V+  ++     + +D ++ EN 
Sbjct: 1170 DFNVN-KSSSSLKFKDIDKDNNDASSEAGKPAYEPAKTVDADNQHILSVEARDSADMENR 1228

Query: 1230 ---TKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSET-AAGSEI 1285
               TK   DRHLDTVE+LKKRSERFKLPMPSEK+ L IKK+ESEPLPS KSE     SE+
Sbjct: 1229 DADTKESGDRHLDTVERLKKRSERFKLPMPSEKEALVIKKLESEPLPSAKSENPVVDSEV 1288

Query: 1286 KQERPARKRRWISN 1299
            KQERPARKRRW++N
Sbjct: 1289 KQERPARKRRWVTN 1302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521886|ref|XP_004167960.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227301, partial [Cucumis sativus]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/914 (54%), Positives = 645/914 (70%), Gaps = 45/914 (4%)

Query: 408  PTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNG--DRDNDLPR 465
            P GRAIQVEGG GERLPSIDTRPPRIRDSDAIIEIV QDS+DD+SS GN   +  ND P 
Sbjct: 283  PAGRAIQVEGGYGERLPSIDTRPPRIRDSDAIIEIVLQDSLDDNSSTGNCTPNEPNDDPS 342

Query: 466  EDRRGENDGAEDEMGPV--DTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLL 523
                 E   AED+   +  DTEY D F E ++S   E V      MN   DN  E   L 
Sbjct: 343  GKDFKEIHEAEDDDAQIESDTEYPDDFSETHNSELTEKVGRRKTSMNSPSDNTREDVNL- 401

Query: 524  PFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDN 583
             F  E P  + P SRG TP Y  +N+G   E+RR  GRT ++SP  +P Q+ Q RK  D+
Sbjct: 402  AFTSEGP-GHHPTSRGNTPAYSAQNLGIV-EERRSQGRTYNKSPH-SPRQNLQDRKSPDS 458

Query: 584  QDEESVESMEGKHSP-LSSPVIVRDARELSVEHKDAVHDE------LVLGDGSSAVEKEE 636
            Q+E SVESM+ K SP +SSP IV   +E S E KDA HDE      L+  D ++ +++E 
Sbjct: 459  QEEGSVESMDDKRSPQVSSPAIVEATQEYSAEDKDAEHDEDAEHDELIEADKNTEIDREN 518

Query: 637  TNAVTTSDSRK---DGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGS 693
             N ++TS++RK   D + + +   +K++  VE   L+E D +EDS+AA SSEN K RSGS
Sbjct: 519  VNFISTSNTRKIESDDEEMEN--NEKLSPIVEALMLKE-DGDEDSKAA-SSENRKTRSGS 574

Query: 694  SRDNKKWREG-DEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGRE 752
            SRD  KW++G +EEV Q+RRS+ MGS+KK+ +ENEQ+FRRKD + +Q+ ERNRM   GR+
Sbjct: 575  SRDYPKWQDGVEEEVFQNRRSSSMGSVKKYMDENEQNFRRKDSDDKQD-ERNRMDVKGRK 633

Query: 753  GSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREH 812
             ++  RD+DPSL H   +K +GFDRRKER N++  WQRR+D+PY RK R E+TRKRE + 
Sbjct: 634  DAYAYRDWDPSLAHQHPLKTDGFDRRKERSNAEATWQRRDDDPYYRKTRTEETRKREYD- 692

Query: 813  LDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEM 872
             DE G+RHR K RE ER D+DE  H  K+LDNGSYR HYDK ASSRHRERDDSLKSRYE 
Sbjct: 693  -DETGSRHRSKIREIERSDKDER-HLTKKLDNGSYRAHYDKGASSRHRERDDSLKSRYEN 750

Query: 873  VDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFD 932
             D Y +K+RKD+E++RR+H EK+EILHG R+  S RKRERD++ + ++R++  R+R+N  
Sbjct: 751  ADSYYNKKRKDEEHLRREHVEKEEILHGKREGKSHRKRERDEVFEPQKRDELLRVRDNIG 810

Query: 933  DHHPVRHKDENWSQRERGERQREREDWHRL-KPHEEILSKREREEGRGAVRSGRSSEDRA 991
            DHH V HK+E W QRER +R R++EDWHR  +  EE LSKR+R+EGR ++RSG  +E++A
Sbjct: 811  DHHIVGHKEE-WLQRERSDRPRDKEDWHRXEQSREENLSKRDRDEGRSSIRSGHGAEEKA 869

Query: 992  WVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNE 1051
            W  H RVKDE K S+KEY  KD VRHSEQ KRR+R+E+ES    RGRED Y+R N  S E
Sbjct: 870  WGSHVRVKDENKVSEKEYPGKD-VRHSEQNKRRDRMEEES--SRRGREDSYSRRNPPSTE 926

Query: 1052 DRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSG 1111
            DR+SR E+S +    +AN  DN R+++K+HK+S  KNRE +  +HN+L  SK++QE+Q+ 
Sbjct: 927  DRRSRLEKSSSER-HAANAFDNQRIHDKRHKDSKMKNREVDGSDHNALGPSKKSQENQNS 985

Query: 1112 HVSEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERD 1171
            + S++ +K + + G+   E  VH + SRK  ++AS+DDE +DSRRGRSKLERWTSHKERD
Sbjct: 986  YRSQVVLKGSDDHGDP--EHSVHHHGSRKHTDDASTDDEQRDSRRGRSKLERWTSHKERD 1043

Query: 1172 FNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGSNPE--- 1228
            FNINSKS+S    KEI +N+NG + E +K P++   A E VD    +A+KK+  + E   
Sbjct: 1044 FNINSKSASLP--KEI-ENNNGGSSEANKNPDDSMKATETVDNHH-LAEKKESGDIEPKG 1099

Query: 1229 ---NTKPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEI 1285
               +TK ++DRH+DTVEKLKKRSERFKLPMPSEK+ L IKKMESEPLPS+KSE  A SEI
Sbjct: 1100 GVSDTKVLEDRHMDTVEKLKKRSERFKLPMPSEKEALVIKKMESEPLPSSKSEAPADSEI 1159

Query: 1286 KQERPARKRRWISN 1299
            K ERPARKRRWIS+
Sbjct: 1160 KPERPARKRRWISS 1173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743639|emb|CBI36522.3| unnamed protein product [Vitis vinifera]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/676 (57%), Positives = 455/676 (67%), Gaps = 82/676 (12%)

Query: 153 LQIVLNEDNHRPMLIDGGG--GDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAP 210
           LQIVLN++NH PM  +  G  G DD+DEDGDPLVIVAD D ++     +EEQEWG D A 
Sbjct: 163 LQIVLNDNNHGPMAAERNGVMGSDDEDEDGDPLVIVADGDQTHPP---LEEQEWGEDTAV 219

Query: 211 AQMGEGGAEKKEGTGERANGAAASAATAAAAA--KIGYSNHFAYHNPYHSQFKYVRPGAA 268
                         GER  GA A+    A A   KIGYS+H  YH P+HSQFKYVRPGAA
Sbjct: 220 -------------DGERKEGADAAKVNGAIAGPPKIGYSSH-GYH-PFHSQFKYVRPGAA 264

Query: 269 PIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGV 328
           PIPG+A  V  G PGQVRPL N+GP  GRGRGDWRPAG+K APPMQK FH GFG  A G 
Sbjct: 265 PIPGAAAVVPGGTPGQVRPLANIGPVPGRGRGDWRPAGIKNAPPMQKNFHSGFGAPAWGG 324

Query: 329 NMAGRG----LEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQ 384
           NMAGRG    LEFTLPSHKTIF+VDID FEEKPW++PGVDI+DFFNFG NEESWK YCKQ
Sbjct: 325 NMAGRGFGGGLEFTLPSHKTIFDVDIDSFEEKPWRHPGVDISDFFNFGFNEESWKQYCKQ 384

Query: 385 LEQHRLETTMQSKIRVYESGRDQ------------------------------------- 407
           LEQ RLE TMQ+KIRVYESGR +                                     
Sbjct: 385 LEQLRLEATMQTKIRVYESGRTEQEYDPDLPPELAAAVGIHDVSAENGNLGRADVGPSDL 444

Query: 408 -----------PTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGN 456
                      PTGRAIQVEGG GERLPS+DTRPPR+RDSDAIIEI  Q S+DDDS  GN
Sbjct: 445 AKASARVRPPIPTGRAIQVEGGCGERLPSVDTRPPRVRDSDAIIEITLQGSLDDDSPTGN 504

Query: 457 GDR---DNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAH 513
           G     DNDLPRED R  N+  ED+    DTEYFD F   Y  RNRELV   APFMN   
Sbjct: 505 GAPEPPDNDLPREDLRVGNE-VEDDAAQEDTEYFDSFSTTYSGRNRELVGRSAPFMNSLR 563

Query: 514 DNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQ 573
           D++P G+G+LPFPPEAP++YRPGSRG  P +PG N GT HE RR  GR   +SP MTP Q
Sbjct: 564 DDMPGGDGILPFPPEAPVQYRPGSRGQDPVHPGGNFGTPHEDRRIRGRAHGKSPHMTPIQ 623

Query: 574 SPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVE 633
           S +  +F D+Q EESVESM+ K    SSPV V   RE SVE KDA+   +VL DG+S +E
Sbjct: 624 STRDNRFLDSQKEESVESMDVKGM-TSSPVRVAPPREPSVEKKDALDGGIVLADGTSGME 682

Query: 634 KEE--TNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARS 691
           +EE  +N +T++D+ KD   +   K +K++S+VEQP  QE D +ED +A RSSENSKARS
Sbjct: 683 REELTSNTMTSTDALKDENLIPFGKKQKLSSRVEQPPPQELDGDEDLKATRSSENSKARS 742

Query: 692 GSSRDNKKWRE-GDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIG 750
            SSRD +KW + G+EEV++D  S RMG+ K+H +E+EQSFRRKDR+GRQEMER+RMV  G
Sbjct: 743 ESSRDLQKWHDGGEEEVIEDGSSVRMGNSKRHLDEDEQSFRRKDRDGRQEMERSRMVVKG 802

Query: 751 REGSHPRRDFDPSLTH 766
           RE ++P RD+D    H
Sbjct: 803 REDTYPHRDWDSIPNH 818

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1299
TAIR|locus:2155806	1196	FIP1[V] "homolog of yeast FIP1	0.420	0.456	0.387	1.9e-160
DICTYBASE|DDB_G0288797	560	fip1l1 "cleavage and polyadeny	0.102	0.237	0.354	1.1e-19
FB|FBgn0031273	826	CG2839 [Drosophila melanogaste	0.374	0.589	0.194	3.9e-18
MGI|MGI:1914149	581	Fip1l1 "FIP1 like 1 (S. cerevi	0.161	0.361	0.297	9.8e-16
UNIPROTKB|E1BWP4	580	Gga.5511 "Uncharacterized prot	0.170	0.381	0.267	1.1e-15
ZFIN|ZDB-GENE-041010-138	570	fip1l1b "FIP1 like 1b (S. cere	0.051	0.117	0.394	1.5e-15
FB|FBgn0037255	701	Fip1 [Drosophila melanogaster	0.061	0.114	0.385	1.5e-14
RGD|1309336	536	Fip1l1 "FIP1 like 1 (S. cerevi	0.060	0.147	0.4	8.6e-14
UNIPROTKB|Q5U317	536	Fip1l1 "Pre-mRNA 3'-end-proces	0.060	0.147	0.4	8.6e-14
UNIPROTKB|F1N0H5	1652	ZC3H13 "Uncharacterized protei	0.515	0.404	0.216	2.1e-13

TAIR|locus:2155806 FIP1[V] "homolog of yeast FIP1 [V]" [Arabidopsis thaliana (taxid:3702)]

 Score = 846 (302.9 bits), Expect = 1.9e-160, Sum P(2) = 1.9e-160
 Identities = 230/594 (38%), Positives = 320/594 (53%)

Query:   717 GSMKKHPEENEQSFRRKDREG-RQEMERNRMVAIGREGSHP---RRDFDPSLTHDM---Q 769
             G   K    +E S   K R G  ++ ++   V   +  S P   R+ +D +  H     Q
Sbjct:   607 GGESKTERSSESS---KARSGSHRDFQQEEDVIQDKHSSRPANNRKQYDNNAPHQSRKNQ 663

Query:   770 MKPEGFDRRKE-----RENSDGVWQRREDEPYSRKNRIEDTRKREREHLD-EIGAR---- 819
              + +  +R +      RENS+   +      YS  +R ED  KR+   +D  +  R    
Sbjct:   664 DRGKEMERTRAASKGGRENSNPHMELDSTYIYSIASR-EDFDKRKERDVDGAVWRRKEDD 722

Query:   820 ---HRGKARESERIDR--DEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVD 874
                 RG    S + DR  D     R ++     R   D+  S +H + D  +++ YE  D
Sbjct:   723 PYSRRGGDEGSRKRDREDDPGFRQRGKMRENEIRSKDDQVPSRKHMD-DAGMRNIYEP-D 780

Query:   875 DYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKXXXXXXXXXXXXXXXXXXXXNFDDH 934
             D+I+KRRKD+EY+RR   EK+EI +G R+  SR K                    +FDDH
Sbjct:   781 DHINKRRKDEEYLRRSRPEKNEISYGQRESMSRVKRERDDRLEHQKRDVQHKIRDDFDDH 840

Query:   935 HPVRHKDENWSXXXXXXXXXXXXDWHRLK-PHEEILSKREREEGRGAVRSGRSSEDRAWV 993
               +R +D+ +                +LK PHE+ +S R RE  + AVR  R SEDR+  
Sbjct:   841 GSLRQRDDIYMQRDGNERLRERDVLDKLKLPHEDGISARGRER-QVAVRGHRGSEDRS-- 897

Query:   994 GHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDR 1053
               +R+KDEYK SDKE+  KDT+RH++Q KRR+   +ES   HRG ED  AR + I N ++
Sbjct:   898 --SRMKDEYKASDKEHVTKDTLRHAKQTKRRDYPGEESSSHHRGHEDFSARTDNIVNNEK 955

Query:  1054 KSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHV 1113
             K RQER+G + D+  +T D  R+ ++KHK+S RK +E   G   SL  SK+ +++ S  V
Sbjct:   956 KPRQERTGAKIDKFIDTLDGQRLQDRKHKDSRRKIKEQREGTE-SL--SKQGEQNGSSVV 1012

Query:  1114 SEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFN 1173
             +  G K T++  NC +E P   N++++ KE ASS DE  DS+RGR+KLERW SHKER+  
Sbjct:  1013 T--GSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKRGRTKLERWASHKEREDA 1070

Query:  1174 INSKSSS-SLKFKEINKNSNGRTLET--SKIPEEPATAVEPVDKQSPMADKKDGSNPENT 1230
             +++KSSS S K +E   N+NGR  E     I +      E +     +AD KDGS     
Sbjct:  1071 VSAKSSSISSKLEEKENNTNGRLSEPVHGSIGKSRDVTEEKIGHD--LADTKDGSE---- 1124

Query:  1231 KPVDDRHLDTVEKLKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSE 1284
             K   DRHLDTVEKLKKRSERFKLPMP+EKDT  +KKMESE LPS K E    SE
Sbjct:  1125 KGPGDRHLDTVEKLKKRSERFKLPMPTEKDTTGVKKMESETLPSAKIEGPVDSE 1178

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0003723 "RNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006397 "mRNA processing" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

DICTYBASE|DDB_G0288797 fip1l1 "cleavage and polyadenylation specificity factor FIP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 213 (80.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 50/141 (35%), Positives = 69/141 (48%)

Query:   326 SGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQL 385
             +G    G G      + KTIFE DI+ FEEKPW  PG DI+D+FN+   EE+WK YC++ 
Sbjct:   131 TGGGGGGSGFNSAKSNQKTIFEFDIESFEEKPWLKPGADISDYFNYNFTEETWKAYCERQ 190

Query:   386 EQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQ 445
                R+E     KI+ YES +    G      GG+G     I  +P  I + +  + +   
Sbjct:   191 NTMRMELNNLGKIKGYESNKPNIGGNTTGGTGGNG-----IGDKP-NITNGNLGVGV--G 242

Query:   446 DSVDDDSSAGNGDRDNDLPRE 466
               +   SS   G    DLP E
Sbjct:   243 GGIGGGSSGSGGSIVGDLPPE 263

GO:0003723 "RNA binding" evidence=ISS

GO:0006379 "mRNA cleavage" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

FB|FBgn0031273 CG2839 [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 3.9e-18, P = 3.9e-18
 Identities = 99/508 (19%), Positives = 202/508 (39%)

Query:   692 GSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGR 751
             G  R  +K R  +EE  ++    R    K+  E   +  R+++ E ++E ER R     +
Sbjct:   279 GKPRIMEKERSKEEEKRKEEERRREEERKREEERKREEERKREEERKREEERKREEERRK 338

Query:   752 EGSHPR---RDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKR 808
             E    +   R+ +     +   K E   +R+E+   +   +R+E+E    + R E+ R++
Sbjct:   339 EEERKKEEEREREEERKREHNRKKEEERKREEKRRKEEE-KRKEEERRKEEERKEEERRK 397

Query:   809 EREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKS 868
             E E  +E   R + + R  E+  RDE     ++      R   ++   +  +E +   + 
Sbjct:   398 EEERKEE--ERRKEEERRKEKRRRDEKRRREEEKRKEEERKEEERREEAERKEEERKAEE 455

Query:   869 RYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKXXXXXXXXXXXXXXXXXXX 928
             R +  +    ++R+ +E  RR+  E+ +     R+   +RK                   
Sbjct:   456 RRKKEERRREEKRRREEKRRREEEERRKE-EERREEEEKRKEEERRKDEERRREEEKRKE 514

Query:   929 XNFDDHHPVRHKDENWSXXXXXXXXXXXXDWHRLKPHEEILSKREREEGRGAVRSGRSSE 988
                +     R ++E               +  + K  EE   K  R+E R      R  E
Sbjct:   515 E--ERREKERRREEGKRKEEERREKERRREEEKRK-EEERREKERRDEERRREEERRREE 571

Query:   989 DRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESR--PPHRGREDVYARGN 1046
             +R      R ++E +  ++  + ++  R  E+ +  ER  +E R     R RE+   +  
Sbjct:   572 ERRREEERRREEERRREEERRREEERKREEERRREEERRREEERRREEERRREEEKRKEE 631

Query:  1047 QISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQ 1106
             +   E+ + R+E    R +      +  R  E+K KE  R+  E            KR +
Sbjct:   632 ERRKEEERKREEEK--RKEEERKREEERRREEEKRKEEERRKEEERKREEEKRKEEKRKR 689

Query:  1107 EDQSGHVSEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTS 1166
             E++     E   +   E+    +E+       RKE+E+   ++  ++ R+ +   E+  +
Sbjct:   690 EEEKRKKEE---RKREEEKRKEDERK-REEEKRKEEEKRKEEERKEEERKKKETEEKEKN 745

Query:  1167 HKERDFNINSKSSSSLKFKEINKNSNGR 1194
              +E+ + +  K ++  K K  + N  G+
Sbjct:   746 MQEKCW-VTKKGTN--KCKTCSTNEKGK 770

GO:0030246 "carbohydrate binding" evidence=IEA

MGI|MGI:1914149 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
 Identities = 70/235 (29%), Positives = 107/235 (45%)

Query:   322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
             G    GV++   G    +P    + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct:   132 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

Query:   382 CKQLEQHR--LE----TTMQSKIRVYESGRDQPTGRAIQVEGGSGERL--PSI-DTRPPR 432
             C++ ++ R  LE    T+  +KI V + GR   + +   +     E    PS+  T  P 
Sbjct:   188 CEKQKRIRMGLEVIPVTSTTNKITV-QQGRTGNSEKEAALPSTKAEFTSPPSLFKTGLPP 246

Query:   433 IRDSDAIIEIVCQDSVDDDSSAGNG-DRDNDLPREDRRGENDGAEDEMGPVDT-EYFDGF 490
              R+S +        S    SS G   DR       D R    GA D +G   T    +G 
Sbjct:   247 SRNSTSSQSQTSTASRKASSSVGKWQDRYGRAESPDLR-RLPGAIDVIGQTITISRVEGR 305

Query:   491 REAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYP 545
             R A ++ N +++   +       +N  +      FPP AP  + P    P P  P
Sbjct:   306 RRANENSNIQVLSDRSA--TEVDNNFSKPPPF--FPPGAPPTHLP----PPPFLP 352

GO:0003723 "RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IDA

GO:0006378 "mRNA polyadenylation" evidence=IC

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|E1BWP4 Gga.5511 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
 Identities = 68/254 (26%), Positives = 110/254 (43%)

Query:   310 APPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKT---IFEVDIDGFEEKPWKYPGVDIT 366
             A P+      G  +  S   +  +G++   P +     + EVD+D FE+KPW+ PG D++
Sbjct:   113 AAPVNLNIKTGGRVYGSSAGVKVKGVDLDAPGNINGVPLLEVDLDSFEDKPWRKPGADLS 172

Query:   367 DFFNFGLNEESWKDYCKQLEQHR--LE----TTMQSKIRVYESGRDQPTGRAIQVEGGSG 420
             D+FN+G NE++WK YC++ ++ R  LE    T+  +KI V + GR     + + V+    
Sbjct:   173 DYFNYGFNEDTWKAYCEKQKRIRMGLEILPVTSATNKITV-QQGRTGNLEKELAVQSTKA 231

Query:   421 ERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAG-NGDRDNDLPREDRRGEN------- 472
             +      T PP +  S               S+A  N        +  R G+        
Sbjct:   232 DF-----TSPPALFKSGIPTNRKSASPQSKTSTASRNASSGIRKCQNSRVGQAVGPLRRL 286

Query:   473 DGAEDEMGPVDT-EYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPL 531
              GA D +G   T    +G R A ++ N +++   +   N   DN  +      FPP AP 
Sbjct:   287 SGAIDVIGQTITISRVEGRRRANENSNIQVLSERS---NPEVDNFTKPPPF--FPPGAPP 341

Query:   532 RYRPGSRGPTPKYP 545
              + P    P P  P
Sbjct:   342 THLP----PPPFLP 351

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

ZFIN|ZDB-GENE-041010-138 fip1l1b "FIP1 like 1b (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
 Identities = 28/71 (39%), Positives = 46/71 (64%)

Query:   320 GFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWK 379
             G G    GV++   G    +P    + E D++ FEEKPW+ PG D++D+FN+G NE++WK
Sbjct:   140 GAGAKVKGVDLEAPGSINGVP----VLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWK 195

Query:   380 DYCKQLEQHRL 390
              YC++ ++ R+
Sbjct:   196 AYCEKQKRLRM 206

GO:0003674 "molecular_function" evidence=ND

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0037255 Fip1 [Drosophila melanogaster (taxid:7227)]

 Score = 166 (63.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 32/83 (38%), Positives = 49/83 (59%)

Query:   345 IFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL-ETTMQSKIRVYES 403
             + E  ID  EEKPW+ PG DITD+FN+G NEE+W+ YC++ ++ R+ E+ +         
Sbjct:   217 VHEFSIDSLEEKPWRKPGADITDYFNYGFNEETWRAYCERQKRFRVAESGVGLASLTQNV 276

Query:   404 GRDQPTGRAIQVEGGSGERLPSI 426
              ++ P G  I  +GG G   P +
Sbjct:   277 NQNAPIG--ILTDGGMGMGPPGM 297

GO:0005515 "protein binding" evidence=IPI

GO:0006398 "histone mRNA 3'-end processing" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

RGD|1309336 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query:   322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
             G    GV++   G    +P    + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct:   132 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

Query:   382 CKQLEQHR--LE----TTMQSKIRVYESGR 405
             C++ ++ R  LE    T+  +KI V + GR
Sbjct:   188 CEKQKRIRMGLEVIPVTSTTNKITV-QQGR 216

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q5U317 Fip1l1 "Pre-mRNA 3'-end-processing factor FIP1" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
 Identities = 36/90 (40%), Positives = 56/90 (62%)

Query:   322 GMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDY 381
             G    GV++   G    +P    + EVD+D FE+KPW+ PG D++D+FN+G NE++WK Y
Sbjct:   132 GTKVKGVDLDAPGSINGVP----LLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

Query:   382 CKQLEQHR--LE----TTMQSKIRVYESGR 405
             C++ ++ R  LE    T+  +KI V + GR
Sbjct:   188 CEKQKRIRMGLEVIPVTSTTNKITV-QQGR 216

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

UNIPROTKB|F1N0H5 ZC3H13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 218 (81.8 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 158/729 (21%), Positives = 271/729 (37%)

Query:   534 RPGSRGPTPKYP-GENI--GTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVE 590
             + G R P+P  P  E+I  G  ++++ +     +  PR    +     +  + +D+    
Sbjct:   259 KKGPRTPSPPPPIQEDIALGKKYKEKYKLKDRIEEKPRDGKDRGRDFERQREKRDKPRST 318

Query:   591 SMEGKH-SPLSSPVIVRDARE-LSVE-HKDAVHDELVLGDGSSAVEKEETNAVTTSDSRK 647
             S  G+H SP+SS      ++   S++ H  +   +      S + ++  T  +  S S  
Sbjct:   319 SPAGQHHSPISSRHHSSSSQSGSSIQRHSPSPRRKRT---PSPSYQRTITPPLRRSASPY 375

Query:   648 DGKALYSPKTKKINSQVXXXXXXXXXXXXXXXXXXXXXXXKARSGS--SRDNKKWREGDE 705
                +L SP+ K+   +                        + R  +   RD +K    + 
Sbjct:   376 PSHSLASPQRKQSPPRHRSPVREKGRHDHERASQSHDRRHERREETRGKRDREKDTREER 435

Query:   706 EVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLT 765
             E  QD+ S+R     + P +       +D   R+E+  +R V   RE     RD   S  
Sbjct:   436 EYEQDQSSSRDHRDDREPRDGRDRRDARDTRDRRELRDSRDVRDSREMRDYSRDNKESRD 495

Query:   766 -HDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKA 824
               D +   +  D R +RE+ D    R+ED  Y      E++R   R HL E  +R   + 
Sbjct:   496 PRDSRSTRDAHDYR-DRESRDA--HRKEDA-YQ-----EESRSYGRNHLREESSRAEIR- 545

Query:   825 RESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRR--K 882
              +S    R E  + R     G      +K +      + DS  S     D + ++    +
Sbjct:   546 NDSRNESRSEIRNDRMGRSRGRAPEMPEKGSRGTRGSQIDSHSSSSNYHDSWETRSSYPE 605

Query:   883 DDEYVRRDHAE--KD---EILHGHRDLTSRRKXXXXXXXXXXXXXXXXXXXXNFDDHHPV 937
              D Y  RD+ E  +D   E  HG RD    R+                      D+    
Sbjct:   606 RDRYPERDNREQARDSSFERRHGERDRRDNRERDQRPSSPIRHQGRNDELER--DERREE 663

Query:   938 RHKDENWSXXXXXXXXXXXXDWHRLKPHEEILSK-REREEGRGAVRSGRSSEDRAWVGHA 996
             R  D                +  R +  E    + RERE+ R   R   + E        
Sbjct:   664 RRVDRT-DDRRDERARERDRERERERERERERERDREREKERELERERAARERERERERE 722

Query:   997 RVKDEYKGSDKEY-QVKDTVRHSEQLKRRERIEDE-------SRPPHRGREDVYARGNQI 1048
             + +D  +  D+E+ + ++  R  E+ K RER  +E        R   R RE   AR  + 
Sbjct:   723 KERDRERERDREHDREREREREREREKEREREREERERERERERERERERERERARERER 782

Query:  1049 SNEDRKSRQERSGTRNDRSANTSD--NNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQ 1106
               E ++  +++   R DR     D   +R     H+E   K R    G+ +   + KR +
Sbjct:   783 ERERQREWEDKEKAREDRREKREDLREDRNPRDGHEERKSKKRYRNEGSPSPRQSPKRRR 842

Query:  1107 EDQSGHVSEMGVKDTHEQGNCGNEKPVHGNSSRKEKEEASSDDEH-QDSRRGRSKLE-RW 1164
             E    H  +    D +  G+  NEK    +   + +E  S    H  + R+GR + + R 
Sbjct:   843 E----HSPD---SDAYNSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRWREDDRK 895

Query:  1165 TSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADK--K 1222
                KE     +S+      FKE   +S  +  E ++I E   T  + +    P  D+   
Sbjct:   896 PERKE-----SSRRYEEQDFKE-KVSSVDKQREQTEITESSRTRSQDLAGHHPSEDRDTS 949

Query:  1223 DGSNPENTK 1231
             DG+  E+ +
Sbjct:   950 DGAYEESKR 958

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XVIII000956 hypothetical protein (1433 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1299
pfam05182	45	pfam05182, Fip1, Fip1 motif	6e-20
COG5213	266	COG5213, FIP1, Polyadenylation factor I complex, s	6e-08
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
TIGR00934	800	TIGR00934, 2a38euk, potassium uptake protein, Trk	4e-04
PRK13875	440	PRK13875, PRK13875, conjugal transfer protein TrbL	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004

>gnl|CDD|191218 pfam05182, Fip1, Fip1 motif

 Score = 83.8 bits (208), Expect = 6e-20
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390
           F+ D++ FEEKPW+ PG DI+D+FN+G NEE+WK YCK+ E+ RL
Sbjct: 1   FDYDLESFEEKPWRKPGADISDYFNYGFNEETWKLYCKKQERLRL 45

This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor. Length = 45

>gnl|CDD|227538 COG5213, FIP1, Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]

 Score = 55.4 bits (133), Expect = 6e-08
 Identities = 22/47 (46%), Positives = 36/47 (76%)

Query: 343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHR 389
           + I ++DI+ F++KPW+ PG DI+D+FN+G NE +WK+YC   E+ +
Sbjct: 116 QNILDIDIESFKDKPWRKPGADISDYFNYGFNEFTWKEYCHMQEKLQ 162

Length = 266

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 45.7 bits (109), Expect = 2e-04
 Identities = 44/278 (15%), Positives = 69/278 (24%), Gaps = 43/278 (15%)

Query: 712 RSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMK 771
           +  R G                 R  R      +      E +  + +  P+        
Sbjct: 56  KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115

Query: 772 PEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERID 831
            E     +  +  +   + R +       R       +        A  R +  E +   
Sbjct: 116 AEAASAPEAAQARER--RERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERR 173

Query: 832 RDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDH 891
           R      R+       R         R R+ DD              + R+D    R   
Sbjct: 174 RRGDREDRQAEAERGERG----RREERGRDGDD--------------RDRRDR---REQG 212

Query: 892 AEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGE 951
             ++E   G RD   RR R R       R +D +       D       D       RG 
Sbjct: 213 DRREE--RGRRDGGDRRGRRRRRDRRDARGDDNRE------DRGDRDGDDGEGRGGRRGR 264

Query: 952 RQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSED 989
           R R+R+             +  R    G  R     ED
Sbjct: 265 RFRDRDR------------RGRRGGDGGNEREPELRED 290

Length = 672

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.5 bits (107), Expect = 2e-04
 Identities = 96/626 (15%), Positives = 232/626 (37%), Gaps = 38/626 (6%)

Query: 631  AVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKAR 690
            A E ++      +++        + + K   ++ ++ E ++  +    +A    +  +A+
Sbjct: 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397

Query: 691  SGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIG 750
              +  D KK    DE         +    KK  EE     ++K  E +++ E  +     
Sbjct: 1398 KKAEEDKKK---ADELKKAAAAKKKADEAKKKAEE-----KKKADEAKKKAEEAKKADEA 1449

Query: 751  REGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKRER 810
            ++ +   +  + +     + K     ++K  E       +++ E    K + ++ +K   
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE--EAKKKADEAKKAAE 1507

Query: 811  EHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRY 870
                   A+   +A++++   + E      +      +   D+   +   ++ +  K   
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567

Query: 871  EMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDIL--DQRRREDQQRIR 928
            E      +K+ ++D+ +    AE+ +     R     +  E +  +  ++ ++ ++ +I+
Sbjct: 1568 E------AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621

Query: 929  -ENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSS 987
             E        + K E   ++E  E+++  E    LK  EE    +  EE + A    + +
Sbjct: 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEE----LKKAEEENKIKAAEEAKKAEEDKKKA 1677

Query: 988  EDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQ 1047
            E+         +DE K ++   +  +  + +E+LK++E  E +     +  E+     N+
Sbjct: 1678 EE----AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE----NK 1729

Query: 1048 ISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQE 1107
            I  E+ K   E    + + +    +  +      KE  +K  E        +      ++
Sbjct: 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789

Query: 1108 DQSGHVSEMGVKDTHEQGNCGNEKPVHGN---SSRKEKEEASSDDEHQDSRRGRSKLERW 1164
            ++     +  +KD  +      E    GN   +  KE E+++  +          + + +
Sbjct: 1790 EKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAF 1849

Query: 1165 TSHKERDFNINSKSSSSLKFKEINKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDG 1224
              HK    N N +  +    KE + N      E  +   E A  +E +DK     +  + 
Sbjct: 1850 EKHKFNKNNENGEDGN----KEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNN 1905

Query: 1225 SNPENTKPVDDRHLDTVEKLKKRSER 1250
            +       + D  LD  E +K+ +E 
Sbjct: 1906 NMAGKNNDIIDDKLDKDEYIKRDAEE 1931

Length = 2084

>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family

 Score = 44.6 bits (105), Expect = 4e-04
 Identities = 55/337 (16%), Positives = 102/337 (30%), Gaps = 21/337 (6%)

Query: 788  WQRREDEPYSRKNRIEDTRKREREHLD-EIGARHRGKARESERIDRDEYLHSRKQLDNGS 846
            W  R  +     ++     +R +  L  E+  R         R+        R+   +  
Sbjct: 129  WFERYFDGIRDSSKQRFFLRRTKTLLQRELEDRPETGVAG--RVTVPHGSAKRRDFQDKL 186

Query: 847  YRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTS 906
            +   + K         D    +R    D+ IS    +    RR   + D        +  
Sbjct: 187  FSGEFVKRDEPDQNSPDVKSDTR---ADESISDLEFEKFAKRRGSRDVDPEDLYRSIMML 243

Query: 907  RRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHE 966
            +   ER            +R  E+  +    R    + S  ER  +   R   +  K  +
Sbjct: 244  QGIHERIREKSSANSRSDERSSESIQEQVERRP---STSDIERNSQSLTRR--YDDKSFD 298

Query: 967  EILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRER 1026
            + +  R  +    A        DRA        D +K   ++   K+       LK R+ 
Sbjct: 299  KAVRLRRSKTIDRAEACDLEELDRAKDFEKMTYDNWKAHHRK--KKNFRPRGWNLKFRKA 356

Query: 1027 IEDESRPPHRGREDVYARGNQISNEDRKSRQERSGT--RNDRSANTSDNNRVNEKKHKES 1084
                SR P     +    GN +S       +E S +   N                 K  
Sbjct: 357  ----SRFPKDSDRNYEDNGNHLSASSSFGSEEPSLSSEENLYPTYNKKREDSRHTLSKTM 412

Query: 1085 SRK--NRESEVGNHNSLVASKRNQEDQSGHVSEMGVK 1119
            S    + +  +G +++ V   + Q+D+ G +    +K
Sbjct: 413  STNYLSWQPTIGRNSNFVGLTKEQKDELGGIEYRALK 449

The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system [Transport and binding proteins, Cations and iron carrying compounds]. Length = 800

>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 35/129 (27%), Positives = 43/129 (33%), Gaps = 35/129 (27%)

Query: 209 APAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAA 268
           AP Q+G G A    GTG  A GAA +AA  A  A                       GAA
Sbjct: 266 AP-QLGAGAAV---GTGLAAGGAAVAAAAGAGLA--------------------AGGGAA 301

Query: 269 PIPGSATAVAAGG--PGQVRPLVNMGPAAGRGR--------GDWRPAGMKTAPPMQKG-F 317
              G+A A   G    G      + G A G G         G  R      A P+++   
Sbjct: 302 AAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAAGVAAGLGGVARAGASAAASPLRRAAS 361

Query: 318 HPGFGMSAS 326
                M +S
Sbjct: 362 RAAESMKSS 370

Length = 440

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 0.004
 Identities = 87/652 (13%), Positives = 224/652 (34%), Gaps = 24/652 (3%)

Query: 653  YSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREGDEEVMQDRR 712
            +  K      +  +    + +E + +   ++ E  KA     +     +   EE  +   
Sbjct: 1081 FDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKA--EEARKAED 1138

Query: 713  STRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKP 772
            + +    +K  +       RK  + R+  E  R     ++    R+  +     +++ K 
Sbjct: 1139 ARKAEEARKAEDAKRVEIARKAEDARK-AEEARKAEDAKKAEAARKAEEVRKAEELR-KA 1196

Query: 773  EGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDR 832
            E   + +    ++   +  E        + E  +K E    D   A+   + R +E I +
Sbjct: 1197 EDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256

Query: 833  DEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKS----RYEMVDDYISKRRKDDEYVR 888
             E           +     +   +   ++ ++  K+    + E        ++K +E  +
Sbjct: 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316

Query: 889  RDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRE 948
             D A+K       +   +++K E      +  + + +   +  +         E   +  
Sbjct: 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376

Query: 949  RGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKE 1008
            + +    ++     K  +E   K+  E+ + A    +++  +     A+ K E K    E
Sbjct: 1377 KKKADAAKKKAEEKKKADE-AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435

Query: 1009 YQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSA 1068
             + K     +E+ K+ +  + ++    +  E       + + E +K+ + +      + A
Sbjct: 1436 AKKK-----AEEAKKADEAKKKAEEAKKAEE-----AKKKAEEAKKADEAKKKAEEAKKA 1485

Query: 1069 NTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMGVKDTHEQGNCG 1128
            + +       KK  + ++K  E++     +  A +  + D++    E    D  ++    
Sbjct: 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545

Query: 1129 N--EKPVHGNSSRKEKEEASSDDEHQDSRRGRSKLERWTSHKERDFNINSKSSSSLKFKE 1186
               ++       +K +E+  +++  +        L +    K+ +     +     + ++
Sbjct: 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605

Query: 1187 INKNSNGRTLETSKIPEEPATAVEPVDKQSPMADKKDGS---NPENTKPVDDRHLDTVEK 1243
              K    +  E +KI  E     E   K+     KK+       E  K  ++ +     +
Sbjct: 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE 1665

Query: 1244 LKKRSERFKLPMPSEKDTLAIKKMESEPLPSTKSETAAGSEIKQERPARKRR 1295
              K++E  K      K     +K  +E L     E     E+K++    K++
Sbjct: 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1299
KOG1049	538	consensus Polyadenylation factor I complex, subuni	100.0
PF05182	45	Fip1: Fip1 motif; InterPro: IPR007854 This short m	99.89
COG5213	266	FIP1 Polyadenylation factor I complex, subunit FIP	99.83
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	86.46

>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]

Probab=100.00  E-value=1.4e-44  Score=403.70  Aligned_cols=500  Identities=21%  Similarity=0.244  Sum_probs=340.8

Q ss_pred             ccCCcccccccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 000758          136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE  215 (1299)
Q Consensus       136 ~~~~~~~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~  215 (1299)
                      .+.++.++.|+.|.|+.+++|++...-+.|+..-   |-+|.+|++.++||++.+.+    ..++.++|..+.  ..-|.
T Consensus        24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~   94 (538)
T KOG1049|consen   24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE   94 (538)
T ss_pred             ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence            4566778899999999999999999876554211   12555667778888877766    788999998771  11111


Q ss_pred             CCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 000758          216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA  295 (1299)
Q Consensus       216 ~gaerk~ggge~~~~~~~~~g~a~~~~kiGys~~g~~~hp~HsqfKYVRPgaa~~pga~~~~~~g~pgqvrp~~~~~~~a  295 (1299)
                      .+        .+ .     ...++                     ||+.++.+..+++...+...+.+|+          
T Consensus        95 ~~--------~~-~-----~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~----------  129 (538)
T KOG1049|consen   95 DD--------VA-V-----DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT----------  129 (538)
T ss_pred             cc--------cc-c-----ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence            11        11 0     00000                     8999999999998888877777766          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 000758          296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE  375 (1299)
Q Consensus       296 GrgrGdWrp~g~k~~~~~~k~~h~g~~~~~~G~~~~GrG~eF~lp~~k~IfdvDID~~eeKPWRkPGADISDYFNYGFnE  375 (1299)
                                   .++..++++|.     +|+-.+.|...      ..+||+||||.|++||||+|||||||||||||||
T Consensus       130 -------------~~~a~~kg~~~-----~~dld~~g~in------~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE  185 (538)
T KOG1049|consen  130 -------------NKSAAPKGKMS-----QVDLDTPGTIN------GVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE  185 (538)
T ss_pred             -------------ccccccccCcc-----cccccCCcccC------CccceeecHHHhccCcccCCCccchhhhccccCH
Confidence                         11223555553     34433333332      2389999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhccccchhhcccCC---CCCCCceeeecCCCCCCCCCCCCCCCCccCCC-CceEEEeccCccCC
Q 000758          376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD  451 (1299)
Q Consensus       376 ~TWr~Yc~kq~qlR~E~tmqsKI~~yESg~---~lptGRaIQVEgg~geR~PS~D~RpPR~rDSD-aIIeIv~qdS~Dd~  451 (1299)
                      +||++||++|++||.+|+++..+.+++..+   .+++.-.||..+-    .|.+       .... +-..++|.++.--.
T Consensus       186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g~----~p~~-------~~ts~~~~~~~~~~~~~~~  254 (538)
T KOG1049|consen  186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPGP----GPVG-------NLTSRTSVGARGIDSNQRP  254 (538)
T ss_pred             HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCCC----CCcc-------ccCCccccccccCCCCCCC
Confidence            999999999999999999988888887654   3444444444431    1111       1110 11112222111110


Q ss_pred             CCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccccccccccchhhhcccccCcccccccCCCCCCCCC-------CC
Q 000758          452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGL-------LP  524 (1299)
Q Consensus       452 ~s~~n~~q~n~~~r~d~r~~~~~~e~~M~~~~~ey~~gfpq~y~~r~~~~~~~~~P~mNs~~~n~pegd~~-------lp  524 (1299)
                              .+.                   +.+.+...-...+.|.     ....|+.|+-..++--|++.       .|
T Consensus       255 --------~~~-------------------~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~r~g~~~~~~~~~~~p  302 (538)
T KOG1049|consen  255 --------AND-------------------VPPSGGGRPLMSVTGS-----RPAEPSSNSQAPGARSGSGEPSGMSEPPP  302 (538)
T ss_pred             --------CCC-------------------CCCCCCCcccccccCC-----cCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence                    000                   0001100000001100     11233333322233333322       23


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 000758          525 FPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV  603 (1299)
Q Consensus       525 ~~~~~p~~~~~gsrg~~p~~~g~~~gtp~e~r~~~gr~~~~Sp~~tP~Qs~~~krf~Dsq~EEs~ESmdgk~s~~-sSPv  603 (1299)
                      +-...|.++.-..-|..++ |-.++-          .+..+.++++|.|+...+--|..+.|....|.++..|.. ..|.
T Consensus       303 ~~~a~p~~~~~~~~~~~~s-p~~~~t----------~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g  371 (538)
T KOG1049|consen  303 SMEAGPSQKERLPPGPEES-PPSNET----------APGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG  371 (538)
T ss_pred             CcCCCCChhhccCCCcCCC-CCcCCC----------CCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence            3333344444444443333 112222          245577888899988889899999999999999988887 7888


Q ss_pred             cccccccccccccccccccccccCCCcchhhcccccccccCcccCCCcccCcccccccccccCCccccCChhHHHHHhhc
Q 000758          604 IVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARS  683 (1299)
Q Consensus       604 ~v~dare~S~E~kD~~d~e~~~adgss~~~~dE~n~~T~~D~~kd~~l~hs~kkqK~~S~veQp~~qe~d~~~dska~rs  683 (1299)
                      .|+.+.. ++.-.+.....+  .++.       +                 .-..++.+...+...+. ++..-++.+|.
T Consensus       372 ~~~~pp~-~~h~~~~~~~s~--~~~~-------~-----------------~~~~~m~~~~~~~~~~~-r~~~rs~~~r~  423 (538)
T KOG1049|consen  372 EVRPPPQ-SAHLAAPEGPSP--KRGE-------S-----------------SPDMYMRHRSPHSRSRD-RDNGRSGYRRR  423 (538)
T ss_pred             ccCCCcc-ccccccCCCCCC--Cccc-------c-----------------CccccccCCCccccccc-ccccccchhhh
Confidence            8888766 555554311122  1111       1                 13346677777888888 77888889999


Q ss_pred             ccccccccCCcccchhhccCcccccccccccccCCcCCCCCccchhhhhhhhhhhHHHHhhhhhhc-ccCCCCCCCCCCC
Q 000758          684 SENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDP  762 (1299)
Q Consensus       684 SenSkaRSgSskD~qk~~egeEeV~Qd~~S~r~g~~rrh~de~e~~~rRKdrd~r~emER~r~~~~-gRe~syp~rd~dp  762 (1299)
                      |+.+++++++.||.|.    +|-|++++.|.+.-++++|+..+....+||.+|.-.||||.|..+. +++..-+||-||-
T Consensus       424 ~~~~s~~~~~~rd~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~  499 (538)
T KOG1049|consen  424 SRSRSPTRDPGRDKKP----GELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDE  499 (538)
T ss_pred             hhcccCCCCcccCCCC----CcccccccccChhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhh
Confidence            9999999999999999    9999999999999999999999999999999999999999999998 8899999999999


Q ss_pred             CCcccccCCCCCccccccccCCcccccccccCcccccc
Q 000758          763 SLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKN  800 (1299)
Q Consensus       763 ~~~~~~~~~~e~~Dr~keren~d~~Wqrredd~~~rr~  800 (1299)
                      ..... ..+++.|++.|+++.....|..+....++++.
T Consensus       500 ~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~~~e~~~~  536 (538)
T KOG1049|consen  500 NEESS-SGRREDHSKSKRSGTHLEEYSSRSSFDESQRN  536 (538)
T ss_pred             ccccc-cccchhcchhhhccccchhhccCCCccccccc
Confidence            87766 67889999999999999999999999998875

>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []

Probab=99.89  E-value=5.3e-24  Score=175.79  Aligned_cols=45  Identities=62%  Similarity=1.359  Sum_probs=43.5

Q ss_pred             eeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhh
Q 000758          346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL  390 (1299)
Q Consensus       346 fdvDID~~eeKPWRkPGADISDYFNYGFnE~TWr~Yc~kq~qlR~  390 (1299)
                      |+||||.+++||||+|||||||||||||||+||++||++|+++|+
T Consensus         1 fd~d~d~~~~KPWr~pGaDisDyFNYGf~E~tW~~Y~~kq~~~R~   45 (45)
T PF05182_consen    1 FDVDIDSFEEKPWRKPGADISDYFNYGFNEETWREYCKKQRQLRK   45 (45)
T ss_pred             CCcChhhhccCCccCCCCChhhhcCCCCCHHHHHHHHHHHHHhhC
Confidence            789999999999999999999999999999999999999999984

This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].

>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]

Probab=99.83  E-value=1.2e-21  Score=203.57  Aligned_cols=54  Identities=41%  Similarity=1.030  Sum_probs=51.3

Q ss_pred             CcceeecCCCcCCCCCCCCCCCCcccccCCCCHHHHHHHHHHHHHhhhhhcccc
Q 000758          343 KTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQS  396 (1299)
Q Consensus       343 k~IfdvDID~~eeKPWRkPGADISDYFNYGFnE~TWr~Yc~kq~qlR~E~tmqs  396 (1299)
                      +.||+|||+.|.+||||+|||||||||||||||+||++||.+|++||..|+.+.
T Consensus       116 ~nI~~iD~Esf~dKPWrkPGAdiSDYFNYGFnEfTW~eYc~~Q~~l~~d~~p~~  169 (266)
T COG5213         116 QNILDIDIESFKDKPWRKPGADISDYFNYGFNEFTWKEYCHMQEKLQQDYNPRE  169 (266)
T ss_pred             cceeeechhhhccCcccCCCcchhhhhhccchhhHHHHHHHHHHHhhhccCHHH
Confidence            479999999999999999999999999999999999999999999999987754

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=86.46  E-value=2.9  Score=53.03  Aligned_cols=108  Identities=24%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             EecCCCCCccCcchhhcccCCCCCcccCCCCCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCC
Q 000758          186 VADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRP  265 (1299)
Q Consensus       186 vadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~~gaerk~ggge~~~~~~~~~g~a~~~~kiGys~~g~~~hp~HsqfKYVRP  265 (1299)
                      +-||+.+    +-|+--|||--. -.+++--|.-+-.|||-.                =|||+.||+.|++---=-|.|+
T Consensus      1159 ygDGp~P----PKmaryDnG~~~-n~SgyRRGgssysgGGYG----------------ggys~gGygsGGYGgsa~~~~~ 1217 (1282)
T KOG0921|consen 1159 YGDGPGP----PKMARYDNGPSN-NNSGYRRGGSSYSGGGYG----------------GGYSGGGYGSGGYGGSAPSARA 1217 (1282)
T ss_pred             ccCCCCC----cccccccCCCcc-CccccccCCCCCCCCCcC----------------CCCCCCCcCCCCCCCCCCCCCC
Confidence            4578888    678999999421 112222221222222111                1566667665554322222222


Q ss_pred             CCCCCCCCcccCCCCCCCccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000758          266 GAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASG  327 (1299)
Q Consensus       266 gaa~~pga~~~~~~g~pgqvrp~~~~~~~aGrgrGdWrp~g~k~~~~~~k~~h~g~~~~~~G  327 (1299)
                      ++      -+++++|--|     .+.+-|-|-|.||.+..++-.  ..-.||.-|+|-.++|
T Consensus      1218 ~~------Gagvg~GyrG-----vsrgGfrnnggGdyrnpgggy--rgsGGfgrgggrgagg 1266 (1282)
T KOG0921|consen 1218 NY------GAGVGNGYRG-----VSRGGFRNNGGGDYRNPGGGY--RGSGGFGRGGGRGAGG 1266 (1282)
T ss_pred             Cc------cccccCCCcc-----ccCCccccCCCCCCCCCCCCc--cCCCCcCCCCCCCCCC
Confidence            22      2333344444     335667677888887543222  1235565555544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1299
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-05
 Identities = 67/500 (13%), Positives = 149/500 (29%), Gaps = 126/500 (25%)

Query: 850  HYDKDASS-RHRERDDSLKSRYEMVDDYISKRRKD------DEYVRR--DHAEKDEILH- 899
            H D +    +++ +D        ++  +      +       +  +      E D I+  
Sbjct: 6    HMDFETGEHQYQYKD--------ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57

Query: 900  GHRDLTSRR-------KRER------DDILDQRRREDQQRIRENFDDHHPVRHKDENWSQ 946
                  + R       K+E       +++L    +     I+       P         Q
Sbjct: 58   KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQ 115

Query: 947  RERGERQRER-EDWH--RLKPHEEI---LSKREREEG---RGAVRSGRSSEDRAWVGHAR 997
            R+R     +    ++  RL+P+ ++   L +    +     G + SG++     WV    
Sbjct: 116  RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-----WVALDV 170

Query: 998  VKDEYKGSDKEYQV-----KDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNE- 1051
                      ++++     K+       L+  +++  +  P    R D  +      +  
Sbjct: 171  CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 1052 -DRKSRQERSGTRNDRSANTS----DNNRVNEKKHKE----SSR---KNRESEVGNHNSL 1099
                 R  +S     +          N  V   K       S +     R  +V +   L
Sbjct: 231  QAELRRLLKS-----KPYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTD--FL 281

Query: 1100 VASKRNQEDQSGHVSEMGVKD--THEQG-----NCGNEKPVHGNSSRKEKEEASSDDEHQ 1152
             A+         H+S        T ++         + +P      +    E  + +  +
Sbjct: 282  SAATT------THISLDHHSMTLTPDEVKSLLLKYLDCRP------QDLPREVLTTNPRR 329

Query: 1153 DS---RRGRSKLERWTSHKERDFN-INSKSSSSLK----------FKEI---NKNSN--G 1193
             S      R  L  W + K  + + + +   SSL           F  +     +++   
Sbjct: 330  LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 1194 RTLE---TSKIPEEPATAVEPVDKQSPMADKKDGSNPENTKPVDDRHLDTVEKLKKRS-- 1248
              L       I  +    V  + K S + +K+     E+T  +   +L+   KL+     
Sbjct: 390  ILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQ---PKESTISIPSIYLELKVKLENEYAL 445

Query: 1249 -----ERFKLPMPSEKDTLA 1263
                 + + +P   + D L 
Sbjct: 446  HRSIVDHYNIPKTFDSDDLI 465

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 4e-05
 Identities = 85/592 (14%), Positives = 162/592 (27%), Gaps = 200/592 (33%)

Query: 579  KFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHD-----ELVLGDGSSAVE 633
             F DN D + V+ M    S LS      +   + +  KDAV         +L      V+
Sbjct: 28   AFVDNFDCKDVQDMP--KSILSK----EEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 634  KEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGS 693
            K     V     R + K L SP    I ++  QP +       + R    ++N      +
Sbjct: 81   K----FVEEVL-RINYKFLMSP----IKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYN 130

Query: 694  -SRDNKKW--REGDEEVMQDRRSTR-----MGSMKK----------HPEENEQSFR---- 731
             SR       R+    +++ R +       +    K          +  + +  F+    
Sbjct: 131  VSRLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 732  --RKDREGRQEMER-NRMVAIGREGSHPRRDFDPSL---THDMQMKPEGFDRRKERENS- 784
              +        +E   +++         R D   ++    H +Q +     + K  EN  
Sbjct: 188  NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 785  ---DGVWQRREDEPY---------SRKNRIED------TRKREREHL------DE----- 815
                 V   +    +         +R  ++ D      T     +H       DE     
Sbjct: 248  LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 816  -------------------------IGARHRGKARESERIDR-DEYLH------------ 837
                                     I    R      + +   D + H            
Sbjct: 308  LKYLDCRPQDLPREVLTTNPRRLSIIAESIR------DGLATWDNWKHVNCDKLTTIIES 361

Query: 838  SRKQLDNGSYRPHYD------KDA------------SSRHRERDDSLKS--RYEMVDDYI 877
            S   L+   YR  +D        A                 +    +    +Y +V+   
Sbjct: 362  SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--- 418

Query: 878  SKRRKDDEYVRRDHAEKDEILHG-HRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHP 936
             K+ K+              +   + +L  + K E +  L  R   D   I + FD    
Sbjct: 419  -KQPKESTIS----------IPSIYLEL--KVKLENEYAL-HRSIVDHYNIPKTFDSDDL 464

Query: 937  VRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSE------DR 990
            +    + +               H +  H   L   E  E        R +       D 
Sbjct: 465  IPPYLDQYFY------------SH-IGHH---LKNIEHPE--------RMTLFRMVFLDF 500

Query: 991  AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKR-RERIEDESRPPHRGREDV 1041
             ++   +++ +    +    + +T+   +QLK  +  I D      R    +
Sbjct: 501  RFLE-QKIRHDSTAWNASGSILNTL---QQLKFYKPYICDNDPKYERLVNAI 548

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00