Citrus Sinensis ID: 000772

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290---

MAAVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVSAFETLPQRGV

cccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcEEEEEEccccccHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHEEcEEcccccccccccccccccHHHHHHHHHHcccccHHHcccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc

cccccHHHHHHHHHcccccccccccccccEEEEEccccccccccHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHEEEEEEEEEEEEEcccHHHHHHHHHHccHHHHHHHHHccccEcccccccccHHHHHHHcccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHcccccEEEccccccEEccccccccccccccccccccEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccccHHHHHHHHHHccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHcccccccccccccccHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcHccHHHccccHHHHHHHHHHHHHHHcccccccccccccEEEccccHHHHHHHHHHHHEEEcccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEcccccHcHHHccccccc

MAAVPVEEAIAALSTfsledeqpevqgpsvlvstergataspieysdvnayRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVkalpqlpnsmkhsqadLYLETYQVLDLEMSRLREIQRWQASAASKLAADMqrfsrperringptITHLWSMLKLLDVLVQLDHLknakasipndfswykRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLAtssekdsesLYKRVKINRLInifksdpvipafpdlhlspAAILKELSMYFQKFSAQtrlltlpaphelppreaqDYQRHYLIANHiggiraehdDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWkfsrpykdavpsetneasasysdyekVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSadwmannsrpeaeqqsmhhvgeesrgnifypravaptaaQVHCLQFLIYEVVsggnlrkpgglfgntgseipvnELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSrviqfpiecslpwmLVDHVLESqnagllesvmmpfdiYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAaselldpsflfssdngekysvqpMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMqsdflpnfilcnttqrfirsskvplasvqkpsvpyakpsfycgtqdlnsAHQSFARLhsgffgipHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQetlpksigllhfdsgVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREvdtthfmqtapwlgflpgadgqisyhqdggdspvvnLFKSATAAivsnpgcpnptsfhtMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYcskwsatpktgfidittskdfyRIYSGLQIGyleessqspsnnhkvlgdsvawGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEaisvpqsqkhphfgQGWEALIEAMKKARRLNNHVFSMLkarcpledktacaikqsgaplhrikfentvsafetlpqrgv

MAAVPVEEAIAALstfsledeqpevQGPSVLVStergataspieysdVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKlaadmqrfsrperrinGPTITHLWSMLKLLDVLVQLDHLKNAKasipndfswykRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLatssekdseslykrVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSrpykdavpsetneasasysdyeKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLrttfrkkkdlsrILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKwsatpktgfidittsKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKqsgaplhrikfentvsafetlpqrgv

MAAVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLIVFAVESLELDFALLFPERHIllrvlpvlvvlATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVSAFETLPQRGV

********************************************YSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQA*******************INGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATS*****ESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPA*********QDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYK*************YSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILS********************************NIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSN*****************AADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYL***********KVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTV***********

***VPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCV*****************YLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFT***************LDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKD*******VKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQT**********************YLIANHIGGIRAEHDDFTIRFASAMNQLL*****************GNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPY***************SDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSAD*******************************VAPTAAQVHCLQFLI***************************LKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSD**EKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFI**********************YCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGA*****************LFKSATAAIVSNPGC****************DLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVE**************QGWEALIEAMKKARRLNNHVFSMLKARC***********QSGAPLHRIK***********P****

MAAVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPY**************YSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNS**************ESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLE*********HKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIKFENTVSAFETLPQRGV

***VPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANN*****************RGNIFYPRAVAPTAAQVHCLQFLIYEVVSGG*************SEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACA**QSGAPLHRIKFENTVSAFET******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1293	2.2.26 [Sep-21-2011]
Q5S2C3		1282	Protein PIR OS=Arabidopsi	yes	no	0.989	0.997	0.852	0.0
Q6UK63		1336	Protein pirA OS=Dictyoste	yes	no	0.921	0.892	0.317	1e-175
Q90YM8		1253	Cytoplasmic FMR1-interact	yes	no	0.916	0.945	0.300	1e-150
Q5SQX6		1253	Cytoplasmic FMR1-interact	yes	no	0.915	0.944	0.297	1e-147
Q6GQD1		1253	Cytoplasmic FMR1-interact	N/A	no	0.915	0.944	0.296	1e-147
Q5R414		1253	Cytoplasmic FMR1-interact	yes	no	0.915	0.944	0.297	1e-147
Q7L576		1253	Cytoplasmic FMR1-interact	no	no	0.935	0.964	0.292	1e-146
Q7TMB8		1253	Cytoplasmic FMR1-interact	no	no	0.921	0.950	0.294	1e-145
Q96F07		1278	Cytoplasmic FMR1-interact	yes	no	0.921	0.932	0.294	1e-145
Q299G2		1291	Cytoplasmic FMR1-interact	yes	no	0.909	0.910	0.282	1e-141

>sp\|Q5S2C3\|PIR_ARATH Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=2	Back alignment and function desciption

 Score = 2289 bits (5932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1101/1291 (85%), Positives = 1198/1291 (92%), Gaps = 12/1291 (0%)

Query: 3    AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKAL 62
            AVPVEEAIAALSTFSLEDEQPEVQGP+V+VS ER AT SPIEYSDV AYRLSLSEDTKAL
Sbjct: 2    AVPVEEAIAALSTFSLEDEQPEVQGPAVMVSAERAATDSPIEYSDVAAYRLSLSEDTKAL 61

Query: 63   NQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQ 122
            NQLNTLIQEGKEMAS+LYTYRSCVKALPQLP SMKHSQADLYLETYQVLDLEMSRLREIQ
Sbjct: 62   NQLNTLIQEGKEMASILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEMSRLREIQ 121

Query: 123  RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 182
            RWQ+SA++KLAADMQRFSRPERRINGPT+THLWSMLKLLDVLVQLDHLKNAKASIPNDFS
Sbjct: 122  RWQSSASAKLAADMQRFSRPERRINGPTVTHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 181

Query: 183  WYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDIL 242
            WYKRTFTQVS QWQDTD+MREELDDLQIFLSTRWAILLNLHVEMFRVN      +VEDIL
Sbjct: 182  WYKRTFTQVSAQWQDTDTMREELDDLQIFLSTRWAILLNLHVEMFRVN------NVEDIL 235

Query: 243  QVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFK 302
            QVLIVF VESLELDFALLFPER+ILLRVLPVLVVLAT SEKD+E+LYKRVK+NRLINIFK
Sbjct: 236  QVLIVFIVESLELDFALLFPERYILLRVLPVLVVLATPSEKDTEALYKRVKLNRLINIFK 295

Query: 303  SDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIAN 362
            +DPVIPAFPDLHLSPAAILKELS+YFQKFS+QTRLLTLPAPHELPPREA +YQRHYLI N
Sbjct: 296  NDPVIPAFPDLHLSPAAILKELSVYFQKFSSQTRLLTLPAPHELPPREALEYQRHYLIVN 355

Query: 363  HIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTA 422
            HIG +RAEHDDFTIRFAS+MNQLLLLKS D A  EWC+EVKGNMYDMV+EGFQLLS+WTA
Sbjct: 356  HIGALRAEHDDFTIRFASSMNQLLLLKSNDGAYTEWCREVKGNMYDMVVEGFQLLSRWTA 415

Query: 423  RIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGS 482
            RIWEQCAWKFSRP +DA   ET EAS SYSDYEKVVR+NY+AEERKALVELV YIK++GS
Sbjct: 416  RIWEQCAWKFSRPCRDA--GETPEASGSYSDYEKVVRFNYTAEERKALVELVGYIKSVGS 473

Query: 483  MMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMAN 542
            M+ R DTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMAN
Sbjct: 474  MLQRCDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMAN 533

Query: 543  NSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGN 602
             +RPE E  S  H  +ESRGN FYPR VAPTAAQVHCLQFLIYEVVSGGNLR+PGG FGN
Sbjct: 534  -TRPEHEMPSSQHGNDESRGNFFYPRPVAPTAAQVHCLQFLIYEVVSGGNLRRPGGFFGN 592

Query: 603  TGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIE 662
             GSEIPVN+LKQLE+FFYKLSFFLHILDY+A++  LTDLGFLWFREFYLESSRVIQFPIE
Sbjct: 593  NGSEIPVNDLKQLETFFYKLSFFLHILDYSASIGILTDLGFLWFREFYLESSRVIQFPIE 652

Query: 663  CSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDI 722
            CSLPWML+D++LE+QN+GLLESV++PFDIYNDSAQQALVVL+QRFLYDEIEAEVDH FDI
Sbjct: 653  CSLPWMLIDYILEAQNSGLLESVLLPFDIYNDSAQQALVVLRQRFLYDEIEAEVDHGFDI 712

Query: 723  FVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSIN 782
            FVSRL E+IFTYYKSW+ASELLDPSFLF+ DNGEK+S+QP+R +ALFKMT+VK+LGR+IN
Sbjct: 713  FVSRLSESIFTYYKSWSASELLDPSFLFALDNGEKFSIQPVRFTALFKMTKVKILGRTIN 772

Query: 783  LRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRL 842
            LRSLIA+RMN++FRENLEFLFDRFESQDLCA+VELEKL+DILKH+HELLS+DLSID F L
Sbjct: 773  LRSLIAQRMNRIFRENLEFLFDRFESQDLCAVVELEKLIDILKHSHELLSQDLSIDPFSL 832

Query: 843  ILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVP 902
            +LNEMQENISLVSFSSRLA+QIWSEMQSDFLPNFILCNTTQRF+RSSKVP    QKPSVP
Sbjct: 833  MLNEMQENISLVSFSSRLATQIWSEMQSDFLPNFILCNTTQRFVRSSKVP--PTQKPSVP 890

Query: 903  YAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKI 962
             AKPSFYCGTQDLN+AHQSFARLHSGFFGIPH+FSIV+LLGSRSLPWLIRALLDH+SNKI
Sbjct: 891  SAKPSFYCGTQDLNAAHQSFARLHSGFFGIPHLFSIVKLLGSRSLPWLIRALLDHISNKI 950

Query: 963  TTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSV 1022
            TTLEP+I GLQE LPKSIGLL FD GVTGCM+L++EQLNWGTKSELK+EVL GIKEIGSV
Sbjct: 951  TTLEPMISGLQEALPKSIGLLSFDGGVTGCMKLIREQLNWGTKSELKSEVLRGIKEIGSV 1010

Query: 1023 LYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVS 1082
            +Y MGLLDIVLREVDT  FMQTAPWLG +PGA+GQI   QD G+SP+VNL KSAT+A+VS
Sbjct: 1011 IYTMGLLDIVLREVDTKRFMQTAPWLGLIPGAEGQIVNAQD-GESPLVNLLKSATSAVVS 1069

Query: 1083 NPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGF 1142
            +PGC NP +F+TMSKQAEAADLLYKANMN GSVLEY LAFTSA+LDKYCSKWSA PKTGF
Sbjct: 1070 SPGCLNPAAFYTMSKQAEAADLLYKANMNGGSVLEYTLAFTSASLDKYCSKWSAPPKTGF 1129

Query: 1143 IDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFD 1202
            +DITTSKDFYRIY GLQIGYLEE +   S  H+VLGDS+AWGGCTIIYLLGQQLHFELFD
Sbjct: 1130 VDITTSKDFYRIYGGLQIGYLEEITAPQSAQHEVLGDSIAWGGCTIIYLLGQQLHFELFD 1189

Query: 1203 FSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKT 1262
            FSYQVLNV+EVE +S   + ++P   QGWE L+E MKKARRLNNHVFSMLKARCPLEDKT
Sbjct: 1190 FSYQVLNVSEVETVSASHTHRNPQIHQGWEGLLEGMKKARRLNNHVFSMLKARCPLEDKT 1249

Query: 1263 ACAIKQSGAPLHRIKFENTVSAFETLPQRGV 1293
            ACAIKQSGAPL R++FENTVSAFETLPQ+G 
Sbjct: 1250 ACAIKQSGAPLPRVRFENTVSAFETLPQKGT 1280

Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the ARP2/3 complex. Interacts with the active form of RHO-family GTPases.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6UK63\|PIRA_DICDI Protein pirA OS=Dictyostelium discoideum GN=pirA PE=1 SV=1	Back alignment and function description

>sp\|Q90YM8\|CYFP1_DANRE Cytoplasmic FMR1-interacting protein 1 homolog OS=Danio rerio GN=cyfip1 PE=2 SV=1	Back alignment and function description

>sp\|Q5SQX6\|CYFP2_MOUSE Cytoplasmic FMR1-interacting protein 2 OS=Mus musculus GN=Cyfip2 PE=1 SV=2	Back alignment and function description

>sp\|Q6GQD1\|CYFP2_XENLA Cytoplasmic FMR1-interacting protein 2 OS=Xenopus laevis GN=cyfip2 PE=2 SV=1	Back alignment and function description

>sp\|Q5R414\|CYFP2_PONAB Cytoplasmic FMR1-interacting protein 2 OS=Pongo abelii GN=CYFIP2 PE=2 SV=1	Back alignment and function description

>sp\|Q7L576\|CYFP1_HUMAN Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1 PE=1 SV=1	Back alignment and function description

>sp\|Q7TMB8\|CYFP1_MOUSE Cytoplasmic FMR1-interacting protein 1 OS=Mus musculus GN=Cyfip1 PE=1 SV=1	Back alignment and function description

>sp\|Q96F07\|CYFP2_HUMAN Cytoplasmic FMR1-interacting protein 2 OS=Homo sapiens GN=CYFIP2 PE=1 SV=2	Back alignment and function description

>sp\|Q299G2\|CYFIP_DROPS Cytoplasmic FMR1-interacting protein OS=Drosophila pseudoobscura pseudoobscura GN=Sra-1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1293
225430654		1677	PREDICTED: protein PIR-like [Vitis vinif	0.993	0.765	0.881	0.0
296085165		1300	unnamed protein product [Vitis vinifera]	0.993	0.988	0.869	0.0
356506020		1277	PREDICTED: protein PIR-like [Glycine max	0.984	0.996	0.877	0.0
356573167		1277	PREDICTED: protein PIR-like [Glycine max	0.984	0.996	0.876	0.0
186523916		1282	protein PIR [Arabidopsis thaliana] gi\|34	0.989	0.997	0.852	0.0
221272636		1277	121F-specific p53 inducible RNA [Lotus j	0.984	0.996	0.864	0.0
186523914		1283	protein PIR [Arabidopsis thaliana] gi\|55	0.989	0.996	0.850	0.0
297812017		1286	protein pir [Arabidopsis lyrata subsp. l	0.989	0.994	0.848	0.0
357512427		1334	121F-specific p53 inducible RNA [Medicag	0.980	0.950	0.830	0.0
449435856		1292	PREDICTED: LOW QUALITY PROTEIN: protein	0.989	0.989	0.844	0.0

>gi\|225430654\|ref\|XP_002268225.1\| PREDICTED: protein PIR-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 2350 bits (6091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1137/1290 (88%), Positives = 1214/1290 (94%), Gaps = 6/1290 (0%)

Query: 3    AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKAL 62
            AVPVEEAIAALSTFSLED+QPEVQGP+V +STERGAT SPIEY+DV+AYRLSLSEDTKAL
Sbjct: 2    AVPVEEAIAALSTFSLEDDQPEVQGPAVWISTERGATQSPIEYTDVSAYRLSLSEDTKAL 61

Query: 63   NQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQ 122
            NQLN+LIQEGKEMASVLYTYRSCVKALPQLP+SMK SQADLYLETYQVLDLEMSRLREIQ
Sbjct: 62   NQLNSLIQEGKEMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREIQ 121

Query: 123  RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 182
            RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS
Sbjct: 122  RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 181

Query: 183  WYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDIL 242
            WYKRTFTQVSV WQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVN      +VEDIL
Sbjct: 182  WYKRTFTQVSVHWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVN------NVEDIL 235

Query: 243  QVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFK 302
            QVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFK
Sbjct: 236  QVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFK 295

Query: 303  SDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIAN 362
            +DPVIPAFPDLHLSPAAILKEL+MYFQKFS QTRLLTLP+PHELPPREAQDYQRHYLI N
Sbjct: 296  NDPVIPAFPDLHLSPAAILKELAMYFQKFSTQTRLLTLPSPHELPPREAQDYQRHYLIIN 355

Query: 363  HIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTA 422
            HIG IR+EHDDFT+RFA ++NQLLLLKS+D+AD+EWCKEVKGNMYDMV+EGFQLLS+WTA
Sbjct: 356  HIGAIRSEHDDFTVRFALSLNQLLLLKSSDSADVEWCKEVKGNMYDMVVEGFQLLSRWTA 415

Query: 423  RIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGS 482
            RIWEQCAWKFSRP K +VP E+ EAS S+SDYEKVVRYNYSAEERK LVELVSYIK+IGS
Sbjct: 416  RIWEQCAWKFSRPCKVSVPMESYEASGSFSDYEKVVRYNYSAEERKGLVELVSYIKSIGS 475

Query: 483  MMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMAN 542
            MM R DTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMAN
Sbjct: 476  MMQRCDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMAN 535

Query: 543  NSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGN 602
             SRPE++ Q + H GEESRG  F+PR VAPT+AQVHCLQFLIYEVVSGGNLRKPGGLFGN
Sbjct: 536  TSRPESDLQPLQHGGEESRGTFFHPRPVAPTSAQVHCLQFLIYEVVSGGNLRKPGGLFGN 595

Query: 603  TGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIE 662
            +GSEIPVN+LKQLE+FFYKLSFFLH+LDYT TV+TLTDLGFLWFREFYLESSRVIQFPIE
Sbjct: 596  SGSEIPVNDLKQLETFFYKLSFFLHVLDYTVTVATLTDLGFLWFREFYLESSRVIQFPIE 655

Query: 663  CSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDI 722
            CSLPWMLVDHVL+SQNAGLLES++MPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDI
Sbjct: 656  CSLPWMLVDHVLDSQNAGLLESILMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDI 715

Query: 723  FVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSIN 782
            FVS+LC+ IFTYYKSWAASELLDPSFLF+ DNGEKYS+QPMR +AL KMTRVKLLGR+I+
Sbjct: 716  FVSKLCDNIFTYYKSWAASELLDPSFLFALDNGEKYSIQPMRFTALLKMTRVKLLGRTID 775

Query: 783  LRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRL 842
            LRSLIAERMNKVFRENLEFLFDRFESQDLC IVELEKLLD+LKH HELLSKDL +D+F L
Sbjct: 776  LRSLIAERMNKVFRENLEFLFDRFESQDLCCIVELEKLLDVLKHAHELLSKDLLMDAFNL 835

Query: 843  ILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVP 902
            +L+EMQENISLVS+SSRLASQIW EM++DFLPNFILCNTTQRF+RSSKVP   VQ+PSVP
Sbjct: 836  MLSEMQENISLVSYSSRLASQIWMEMRNDFLPNFILCNTTQRFVRSSKVPSVPVQRPSVP 895

Query: 903  YAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKI 962
             AKP+FYCGTQDLNSAHQ+FA+LHSGFFG+ HMFSIVRLLGSRSLPWLIRALLDH+SNKI
Sbjct: 896  SAKPNFYCGTQDLNSAHQTFAQLHSGFFGMAHMFSIVRLLGSRSLPWLIRALLDHISNKI 955

Query: 963  TTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSV 1022
             TLEP+I GLQE LPKSIGLL FD GVTGCMRLV+E LNW +K ELK EVL GIKEIGSV
Sbjct: 956  ATLEPMITGLQEALPKSIGLLPFDGGVTGCMRLVRENLNWASKPELKCEVLRGIKEIGSV 1015

Query: 1023 LYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVS 1082
            LYWMGLLDIVLRE+DTTHFMQTAPWLG +PG DGQI   QD GDSPVV LFKSATAAIVS
Sbjct: 1016 LYWMGLLDIVLRELDTTHFMQTAPWLGLIPGVDGQILQGQDCGDSPVVTLFKSATAAIVS 1075

Query: 1083 NPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGF 1142
            NPGC +PTSFHT+SKQAEAADLL KANMNTGSVLEYALAFTSAALDKYCSKWSA PKTGF
Sbjct: 1076 NPGCLDPTSFHTLSKQAEAADLLCKANMNTGSVLEYALAFTSAALDKYCSKWSAAPKTGF 1135

Query: 1143 IDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFD 1202
            +DITTSKDFYRI+SGLQIG+LEES Q P NNH++LGDSVAWGGCTIIYLLGQQLHFELFD
Sbjct: 1136 LDITTSKDFYRIFSGLQIGHLEESVQLPPNNHEILGDSVAWGGCTIIYLLGQQLHFELFD 1195

Query: 1203 FSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKT 1262
            FSYQVLNVAEVE  ++ Q+ K+PH  QGWE L+EAMKKARRLNNHVFSMLKARCPLEDK 
Sbjct: 1196 FSYQVLNVAEVEVAALIQTHKNPHLAQGWECLLEAMKKARRLNNHVFSMLKARCPLEDKV 1255

Query: 1263 ACAIKQSGAPLHRIKFENTVSAFETLPQRG 1292
            ACAIKQSGAPLHRIKFENTVSAFETLPQ+G
Sbjct: 1256 ACAIKQSGAPLHRIKFENTVSAFETLPQKG 1285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296085165\|emb\|CBI28660.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356506020\|ref\|XP_003521786.1\| PREDICTED: protein PIR-like [Glycine max]	Back alignment and taxonomy information

>gi\|356573167\|ref\|XP_003554735.1\| PREDICTED: protein PIR-like [Glycine max]	Back alignment and taxonomy information

>gi|186523916|ref|NP_974801.2| protein PIR [Arabidopsis thaliana] gi|341941255|sp|Q5S2C3.2|PIR_ARATH RecName: Full=Protein PIR; AltName: Full=PIR of plants; AltName: Full=Protein KLUNKER; Short=AtSRA1; AltName: Full=Protein PIROGI gi|45861654|gb|AAS78644.1| ARP2/3 regulatory protein subunit PIRP [Arabidopsis thaliana] gi|50236403|gb|AAT71307.1| PIROGI [Arabidopsis thaliana] gi|51922059|tpg|DAA04564.1| TPA_exp: PIRP [Arabidopsis thaliana] gi|332005174|gb|AED92557.1| protein PIR [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|221272636\|emb\|CAQ17049.1\| 121F-specific p53 inducible RNA [Lotus japonicus] gi\|221272638\|emb\|CAQ17050.1\| 121F-specific p53 inducible RNA [Lotus japonicus]	Back alignment and taxonomy information

>gi\|186523914\|ref\|NP_197342.3\| protein PIR [Arabidopsis thaliana] gi\|55774576\|gb\|AAV64873.1\| PIR [Arabidopsis thaliana] gi\|332005173\|gb\|AED92556.1\| protein PIR [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297812017\|ref\|XP_002873892.1\| protein pir [Arabidopsis lyrata subsp. lyrata] gi\|297319729\|gb\|EFH50151.1\| protein pir [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357512427\|ref\|XP_003626502.1\| 121F-specific p53 inducible RNA [Medicago truncatula] gi\|355501517\|gb\|AES82720.1\| 121F-specific p53 inducible RNA [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449435856\|ref\|XP_004135710.1\| PREDICTED: LOW QUALITY PROTEIN: protein PIR-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1293
DICTYBASE\|DDB_G0287855		1336	pirA "component of SCAR regula	0.629	0.609	0.355	3.1e-166
UNIPROTKB\|Q5R414		1253	CYFIP2 "Cytoplasmic FMR1-inter	0.665	0.686	0.318	3.8e-144
ZFIN\|ZDB-GENE-030131-8557		1257	cyfip1 "cytoplasmic FMR1 inter	0.752	0.774	0.303	6.3e-140
UNIPROTKB\|F1PMM7		1310	CYFIP2 "Uncharacterized protei	0.665	0.656	0.318	4e-138
UNIPROTKB\|F1NE09		1256	CYFIP2 "Uncharacterized protei	0.665	0.684	0.317	5.1e-138
MGI\|MGI:1924134		1253	Cyfip2 "cytoplasmic FMR1 inter	0.665	0.686	0.318	8.2e-138
UNIPROTKB\|E7EVF4		1253	CYFIP2 "Cytoplasmic FMR1-inter	0.665	0.686	0.318	1.1e-137
ZFIN\|ZDB-GENE-080724-2		1253	cyfip2 "cytoplasmic FMR1 inter	0.665	0.686	0.314	2.5e-136
UNIPROTKB\|Q7L576		1253	CYFIP1 "Cytoplasmic FMR1-inter	0.668	0.690	0.314	5.2e-136
RGD\|1310332		1253	Cyfip1 "cytoplasmic FMR1 inter	0.668	0.690	0.313	8.4e-136

DICTYBASE\|DDB_G0287855 pirA "component of SCAR regulatory complex" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

 Score = 1300 (462.7 bits), Expect = 3.1e-166, Sum P(2) = 3.1e-166
 Identities = 309/868 (35%), Positives = 496/868 (57%)

Query:   409 MVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERK 468
             + + G ++LS WT+R+ +Q AWK+S+P  D  P+     SA++ DYE+VV++NY+ EER 
Sbjct:   397 ITLMGLRILSDWTSRVLQQSAWKYSKPNND--PT----ISATF-DYERVVKFNYTKEERT 449

Query:   469 ALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFR---KKKDL 525
             ALV+L++ IK++ S+M++S+TL+   L +TIH E+Q+FVQ  L   +++  +   KKKD 
Sbjct:   450 ALVQLIAMIKSLASLMMKSETLLQPILRKTIHQELQEFVQINLKETIKSFVKNNPKKKDN 509

Query:   526 SRI-LSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYP-RAVAPTAAQVHCLQFL 583
              ++ +S ++ +S DW +     EA         EE    +  P RAV P+  Q+     L
Sbjct:   510 IKLEMSQLKNISVDWFSGFEPAEAVPNKKSKEVEEK---VQIPARAVPPSPTQLE----L 562

Query:   584 IYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGF 643
             I  +VS    +K          +   ++ +  E+F  K  F+ ++L  ++++ ++TDL  
Sbjct:   563 ILTLVSSLMDKK---------KDFSSDQYRDFEAFSSKAFFYRYLLSLSSSIISITDLAD 613

Query:   644 LWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVL 703
             LW+REFYLE +  +QFPIE SLPW+L DH+LES +  L+E +  P  +YND+AQ+AL+ L
Sbjct:   614 LWYREFYLELNNRVQFPIETSLPWILTDHILESDDPSLIEHLFYPLGLYNDTAQRALLSL 673

Query:   704 KQRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSD----NGEKYS 759
              QRFLYDEIEAE++ CFD  + +L   ++T++K+ A+S LLD  +    +    NG+ ++
Sbjct:   674 NQRFLYDEIEAELNLCFDQLLYKLSGKVYTHFKTQASSILLDKPYKTQLELAHFNGKLHT 733

Query:   760 VQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEK 819
              +  R   L +   + LLGRSI+L  L+A+R N   R+NL++   RFE+ DL +IVELE 
Sbjct:   734 PKS-RFDVLLRQKHITLLGRSIDLCGLLAQRQNNTIRQNLDYAISRFEACDLTSIVELET 792

Query:   820 LLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILC 879
              +  +K TH+LLS+   ID F  I NE+ E+ SLVS+  R+   I  E+ +DF PN+   
Sbjct:   793 QIANIKLTHKLLSEYFDIDPFESIFNEINESTSLVSYHGRIVLHIIFELVADFAPNYTFN 852

Query:   880 NTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIV 939
             + TQRFI++       +++ ++P   P F  G + LN+A+ +   L+  F G+PH+ SI+
Sbjct:   853 SITQRFIKAPYTFTEELKRDALPKTNPVFLFGNKYLNAAYANSIELYKNFIGVPHIQSIL 912

Query:   940 RLLGSRSLPWLIRALLDHMSNKITT-LEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKE 998
             R++G ++LP ++  +L ++  KIT  L P +  L + +P S  L  +D G  G     + 
Sbjct:   913 RIVGKKNLPLIVAEVLRNIEIKITNVLSPYVSELLQGMPASTKLPIYDYGTEGGYGYFQL 972

Query:   999 QL-NWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGA--D 1055
             +L +     +L+ EVL   +E+G+ L +M LLD V+ + D+ +F + AP+LG  P    D
Sbjct:   973 KLKDIYIYPDLRPEVLQTFRELGNSLVFMNLLDQVITQTDSYNFAKAAPFLGITPETWKD 1032

Query:  1056 GQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPT-SFHTMSKQAEAADLLYKANMNTGS 1114
              + S       SP+ +  +     + S P     + S + M   A  AD  Y+ +    S
Sbjct:  1033 LEPSTEDPTLQSPLYSQLQKLAQLLESRPEVAKSSQSLNDMVANAWRADKFYRPSEQNFS 1092

Query:  1115 VLEYALAFTSAALDKYCSKWS-ATPKTGFIDITTSKDFYRIYSGLQIGYLEE-SSQSPSN 1172
             + +  L   S+ L+     WS A P  G I + +S +FYR++S LQ       S+++  +
Sbjct:  1093 LFKSVLQRFSSILNIVRHDWSGAPPDNGVICVDSSTEFYRLWSALQFVICWPLSNENDKS 1152

Query:  1173 NHKVLGDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWE 1232
              H++ GD + W GC++I+ LGQQ  FELFDF Y +LNV E  A+   +S K P       
Sbjct:  1153 FHELFGDGLMWAGCSLIHFLGQQYRFELFDFCYHILNVEEAAAV---RSDK-P------- 1201

Query:  1233 ALIEAMKKA---RRLNNHVFSMLKARCP 1257
             AL    K A   + +NN +FS+L   CP
Sbjct:  1202 ALKNFFKNAQIIKDINNQIFSILNTYCP 1229

GO:0031209 "SCAR complex" evidence=IDA

GO:0030835 "negative regulation of actin filament depolymerization" evidence=IMP

GO:0006928 "cellular component movement" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0032433 "filopodium tip" evidence=IC

GO:0031252 "cell leading edge" evidence=IC

GO:0031143 "pseudopodium" evidence=IC

GO:0005911 "cell-cell junction" evidence=IC

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB\|Q5R414 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-8557 cyfip1 "cytoplasmic FMR1 interacting protein 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PMM7 CYFIP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NE09 CYFIP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1924134 Cyfip2 "cytoplasmic FMR1 interacting protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EVF4 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-080724-2 cyfip2 "cytoplasmic FMR1 interacting protein 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7L576 CYFIP1 "Cytoplasmic FMR1-interacting protein 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1310332 Cyfip1 "cytoplasmic FMR1 interacting protein 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q90YM8	CYFP1_DANRE	No assigned EC number	0.3001	0.9164	0.9457	yes	no
Q5S2C3	PIR_ARATH	No assigned EC number	0.8528	0.9891	0.9976	yes	no
Q6UK63	PIRA_DICDI	No assigned EC number	0.3171	0.9218	0.8922	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PIR121	PIR121; transcription activator; distorted trichomes and exhibits a diffuse actin cytoskeleton ; Involved in regulation of actin and microtubule organization. Part of a WAVE complex that activates the ARP2/3 complex. Interacts with the active form of RHO-family GTPases (1283 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	GRL	GRL (GNARLED); transcription activator; Component of the WAVE protein complex which act as acti [...] (1425 aa)	•	•	•	•	0.999
	ROP2	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2); GTP binding; Member of the Rho GTPase family. Functio [...] (195 aa)		•		•	0.999
	BRK1	BRK1 (BRICK1); Component of the WAVE protein complex which act as activators of ARP2/3 complex [...] (85 aa)		•	•	•	0.996
	SCAR2	SCAR2 (SCAR HOMOLOG 2); Encodes a subunit of the WAVE complex. The WAVE complex is required for [...] (1399 aa)	•		•	•	0.987
	WAVE2	WAVE2; Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) complex. [...] (1020 aa)	•		•	•	0.978
	ATSCAR4	ATSCAR4; Encodes a member of the SCAR family.These proteins are part of a complex (WAVE) comple [...] (1170 aa)			•	•	0.977
	WAVE1	WAVE1; actin monomer binding; Encodes a member of the SCAR family.These proteins are part of a [...] (821 aa)			•	•	0.965
	ARAC5	ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5); GTP binding / GTPase; Belongs to the plant-specific ROP [...] (196 aa)		•		•	0.936
	ARAC3	ARAC3 (ARABIDOPSIS RAC-LIKE 3); GTP binding / GTPase; A member of ROP GTPase gene family; Encod [...] (198 aa)		•		•	0.932
	ARP2	ARP2 (ACTIN RELATED PROTEIN 2); protein binding / structural constituent of cytoskeleton; encod [...] (389 aa)				•	0.919

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1293
PLN03099		1232	PLN03099, PIR, Protein PIR; Provisional	0.0
pfam05994		815	pfam05994, FragX_IP, Cytoplasmic Fragile-X interac	1e-144

>gnl\|CDD\|215574 PLN03099, PIR, Protein PIR; Provisional	Back alignment and domain information

 Score = 2151 bits (5574), Expect = 0.0
 Identities = 942/1294 (72%), Positives = 1069/1294 (82%), Gaps = 68/1294 (5%)

Query: 3    AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKAL 62
            AVPVEEA+AALSTFSLEDEQP+VQG +V +S  R AT SPI+YSDV AY+LSLSEDTKA+
Sbjct: 2    AVPVEEAVAALSTFSLEDEQPDVQGLAVTLSAGRAATESPIDYSDVAAYQLSLSEDTKAI 61

Query: 63   NQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQ 122
            NQLNTLIQEGKEM S+LYTYRSCVKALPQLP SMKHSQADLYLETYQVLDLE+ RLREIQ
Sbjct: 62   NQLNTLIQEGKEMVSILYTYRSCVKALPQLPESMKHSQADLYLETYQVLDLEIGRLREIQ 121

Query: 123  RWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKASIPNDFS 182
            RWQ+SAASKLAADMQRFSRPERRINGPT+TH+WSMLKLLDVL+QLDHLKNAKASIPNDFS
Sbjct: 122  RWQSSAASKLAADMQRFSRPERRINGPTVTHMWSMLKLLDVLLQLDHLKNAKASIPNDFS 181

Query: 183  WYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDIL 242
            WYKRTFTQVS QW DTD+MREELDDLQIFLSTRWAILLNL  EMFRVN      +VEDIL
Sbjct: 182  WYKRTFTQVSTQWPDTDTMREELDDLQIFLSTRWAILLNLQAEMFRVN------NVEDIL 235

Query: 243  QVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFK 302
            QVLIVF +ESLE DF LL+ ERHILLRVLPVLVVLATSSEK+ ESL+KR+KINRLINIF 
Sbjct: 236  QVLIVFCLESLESDFVLLYSERHILLRVLPVLVVLATSSEKEGESLFKRIKINRLINIF- 294

Query: 303  SDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIAN 362
                                                                QR YLI N
Sbjct: 295  ----------------------------------------------------QREYLIVN 302

Query: 363  HIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEGFQLLSKWTA 422
            H+G IRAEHDDF IRFASAMNQL LLKS D  D  W +E+K NMYD+V+EGFQLLS+WT 
Sbjct: 303  HMGAIRAEHDDFCIRFASAMNQLQLLKSADGVDTAWSREIKENMYDVVVEGFQLLSEWTG 362

Query: 423  RIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGS 482
            RIWEQCAWKFSRP KDA  +   E S S +DYEKVVR NY+AEERKALVEL+ YIK +GS
Sbjct: 363  RIWEQCAWKFSRPAKDA--TPDPERSGSVTDYEKVVRCNYTAEERKALVELIGYIKGVGS 420

Query: 483  MMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMAN 542
            M+ R DTLVADALWETIHA+VQDFVQN LATMLRTTFRKKK+LSRILSDMRT++ADWMAN
Sbjct: 421  MLERCDTLVADALWETIHAQVQDFVQNKLATMLRTTFRKKKELSRILSDMRTIAADWMAN 480

Query: 543  NSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGN 602
               PE +  S     +ESR N FYPR VAPTAAQ+HCLQFLI+E+VSGG+ +KPGG FGN
Sbjct: 481  TR-PEEKMPSRQRENDESRPNFFYPRPVAPTAAQLHCLQFLIHELVSGGSPKKPGGFFGN 539

Query: 603  TGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLESSRVIQFPIE 662
             GSEIPVN+LKQLE+FF KL+FF HILDY AT+  LTDLGFLWFREFYLE+SRVIQFPIE
Sbjct: 540  NGSEIPVNDLKQLETFFNKLAFFPHILDYRATIGHLTDLGFLWFREFYLETSRVIQFPIE 599

Query: 663  CSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDI 722
            CSLPWMLVD++LESQ+AGLLESV++PFDIYNDSAQ AL VLKQRFLYDEIEAEVD CFD 
Sbjct: 600  CSLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQ 659

Query: 723  FVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSIN 782
             VS+L E+IFTYYKS AAS+LLDPSFL + DNGEK+SVQP R  ALFKM RVK+LGR+I+
Sbjct: 660  LVSKLSESIFTYYKSRAASKLLDPSFLAAVDNGEKFSVQPKRYDALFKMRRVKILGRTID 719

Query: 783  LRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRL 842
            L SLIA+RMNK+FRENL+FLF+RFESQDLC++VEL++L++IL+ THELLS+ LSID F L
Sbjct: 720  LASLIAQRMNKIFRENLDFLFERFESQDLCSVVELQRLVEILRLTHELLSEHLSIDPFSL 779

Query: 843  ILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVP 902
            +L EMQENISLVSFSSRLASQIWSEMQ+DFLPNFILCNTTQRF+RSSKVP    ++PSVP
Sbjct: 780  MLGEMQENISLVSFSSRLASQIWSEMQNDFLPNFILCNTTQRFVRSSKVPQRPTRRPSVP 839

Query: 903  YAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKI 962
             AKPSF CGTQDLN AHQSFA LHS FFG+PHMF+IV+LLGSRSLPWLIRALLDH+S KI
Sbjct: 840  SAKPSFLCGTQDLNMAHQSFAELHSKFFGLPHMFAIVKLLGSRSLPWLIRALLDHLSQKI 899

Query: 963  TTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSV 1022
            TTLEP+I  L+E +PK+IGL  FD GV GCM++ +EQL WGTK E K+EVL G+KEIGS+
Sbjct: 900  TTLEPMIEDLREAMPKAIGLPSFDGGVAGCMKIFREQLQWGTKYEGKSEVLRGLKEIGSL 959

Query: 1023 LYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVS 1082
            ++WM LLDI +REV+T  FMQ APWLG +PG +GQ+    D  +SP+V+LFK AT+A+VS
Sbjct: 960  IFWMSLLDIAMREVETVQFMQVAPWLGLVPGKEGQLQ-QADDNESPLVSLFKEATSAVVS 1018

Query: 1083 NPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCSKWSATPKTGF 1142
            +PGC NP++F +MSKQAE ADLLYK+N+NTGSVLEY LAFTSA LD++ SKWSA PKTGF
Sbjct: 1019 SPGCLNPSAFVSMSKQAEVADLLYKSNLNTGSVLEYTLAFTSAVLDRHRSKWSAPPKTGF 1078

Query: 1143 IDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFD 1202
            IDITTSKDFYRIYSGLQ  YLEE S   S  H+ LGDSVAWGGCTI+YLLGQQL FEL D
Sbjct: 1079 IDITTSKDFYRIYSGLQYVYLEEISAEGSAFHERLGDSVAWGGCTIVYLLGQQLRFELLD 1138

Query: 1203 FSYQVLNVAEVEAISVPQSQ-----KHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCP 1257
            F Y VL+V+EVE+ S   +      K P + QGWE  +E  +KARRLNNHVFS+L+ARCP
Sbjct: 1139 FIYHVLSVSEVESASASHTHRNERLKSPSYHQGWEGFLENARKARRLNNHVFSLLRARCP 1198

Query: 1258 LEDKTACAIKQSGAPLHRIKFENTVSAFETLPQR 1291
            LEDK A  IKQSGAP+HR+K+ NT SAFETLPQ+
Sbjct: 1199 LEDKLASMIKQSGAPVHRVKYPNTPSAFETLPQK 1232

Length = 1232

>gnl\|CDD\|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1293
PLN03099		1232	PIR Protein PIR; Provisional	100.0
KOG3534		1253	consensus p53 inducible protein PIR121 [General fu	100.0
PF05994		820	FragX_IP: Cytoplasmic Fragile-X interacting family	100.0
PF07159		303	DUF1394: Protein of unknown function (DUF1394); In	100.0
KOG3951		321	consensus Uncharacterized conserved protein [Funct	100.0
PF14745		567	WASH-7_N: WASH complex subunit 7, N-terminal	98.89
PF09735		1116	Nckap1: Membrane-associated apoptosis protein; Int	98.15
PF14744		350	WASH-7_mid: WASH complex subunit 7	90.0

>PLN03099 PIR Protein PIR; Provisional	Back alignment and domain information

Probab=100.00  E-value=0  Score=3494.71  Aligned_cols=1226  Identities=77%  Similarity=1.202  Sum_probs=1193.9

Q ss_pred             ccCHHHHHhhcccCCCCCCCccccCCcceEeeccCCCCCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000772            3 AVPVEEAIAALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLSEDTKALNQLNTLIQEGKEMASVLYTY   82 (1293)
Q Consensus         3 ~v~~~~av~~L~~~~l~d~qP~ie~~~~~l~y~~~~~~~~tnf~Dr~a~~t~~~eE~e~~~~ln~vLeeg~~~l~~LytY   82 (1293)
                      |||++|||++|++||||||||||||+|++|.-+|+++||||||+||+||+||++||+++++++|++|+||++++++||||
T Consensus         2 ~~~~~~av~~L~~~~l~d~QP~Ie~~~~~i~~~~y~~~~~tnf~D~~Ay~~~~aEea~~~~~ln~ll~eG~e~a~~LYT~   81 (1232)
T PLN03099          2 AVPVEEAVAALSTFSLEDEQPDVQGLAVTLSAGRAATESPIDYSDVAAYQLSLSEDTKAINQLNTLIQEGKEMVSILYTY   81 (1232)
T ss_pred             CCcHHHHHHHHhcCCCCCCCccccCCCcceecccccccCCCcccchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            79999999999999999999999999999995555789999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhcCCCchHHHHHHHHHHH
Q 000772           83 RSCVKALPQLPNSMKHSQADLYLETYQVLDLEMSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLD  162 (1293)
Q Consensus        83 RscsraIpqaisn~qpn~~eiye~t~~vL~PeV~KLk~FyeFs~~a~~~l~~~l~~l~h~E~~q~l~se~~L~~La~iLd  162 (1293)
                      |||||||||+++|+|||++||||+|++||.|||+||++||+||++|+.+||++|++|||.|||+++|+|+||++|+++||
T Consensus        82 RsCsrAlPq~k~~~q~nr~eiYe~t~eVLepEi~KL~~fm~fq~~Ai~~f~~e~krl~~~Ekrk~f~Sea~l~tl~k~ln  161 (1232)
T PLN03099         82 RSCVKALPQLPESMKHSQADLYLETYQVLDLEIGRLREIQRWQSSAASKLAADMQRFSRPERRINGPTVTHMWSMLKLLD  161 (1232)
T ss_pred             HHHHhhcCCCCccccccHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhhccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccCCCCCcchhHHhhhHhhhhhccCCchhHHHHhhhhhhhhcchhhHHHHHHHHHHHhccccCCcchHHHH
Q 000772          163 VLVQLDHLKNAKASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTENSVEDIL  242 (1293)
Q Consensus       163 f~l~lD~LK~~k~sIqNDFS~YRRa~sr~~~~~~d~~~v~~E~~~LSlFlA~~~pil~~L~~~~~~i~k~l~~~~~ed~L  242 (1293)
                      |+++||+|||||+||+||||+|||||.++.++|+|++++++|+++|||||||+|.|+.+|++++.+++      ||||+|
T Consensus       162 mfa~LD~LKNmKAsi~NDfS~ykRAf~qfl~~~~d~~~~~e~~q~Ls~FLatqn~I~~~Lk~~l~~i~------gyediL  235 (1232)
T PLN03099        162 VLLQLDHLKNAKASIPNDFSWYKRTFTQVSTQWPDTDTMREELDDLQIFLSTRWAILLNLQAEMFRVN------NVEDIL  235 (1232)
T ss_pred             HHHHHHHHhhhhccccccHHHHHHHHHHHHHhcCCchhHHHHHhhHHHHhcchHHHHHHHHHHHHhcc------CHHHHH
Confidence            99999999999999999999999999888888999999997789999999999999999999999999      999999


Q ss_pred             HHHHHHHHHhhhcccccCCccchhhheeeceeeeeecCCCCchhhHHhHhchhHHHhhhhcCCccccCCCcccCHHHHHh
Q 000772          243 QVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKSDPVIPAFPDLHLSPAAILK  322 (1293)
Q Consensus       243 ~t~anvC~~mlE~~~y~~p~ek~~lLRVM~~~iiL~D~v~~~~~ni~Kri~l~~~~kifK~~pVVPl~gDm~i~~~~~~k  322 (1293)
                      ++++|+|++|+|+++|++|+|||+|||||+|+++|+|++++++...+|||||+|++|||                     
T Consensus       236 ~~ivn~C~~~yE~~~yl~p~EKH~LlrVm~f~l~L~ds~~k~~~~~~Kri~i~rldkiF---------------------  294 (1232)
T PLN03099        236 QVLIVFCLESLESDFVLLYSERHILLRVLPVLVVLATSSEKEGESLFKRIKINRLINIF---------------------  294 (1232)
T ss_pred             HHHHHHHHHHhccCceecCccceeEEEeeeeeEEEecccccchHHHhhhccHHHHHHHh---------------------
Confidence            99999999999999999999999999999999999998777766678999999999998                     


Q ss_pred             hhchhhhhhhhhcccccCCCCCCCCcchhhcccchhHHhhhhhhHHhhHHHHHHHHHHHhhHHHHhhcCCCcchhhhHhh
Q 000772          323 ELSMYFQKFSAQTRLLTLPAPHELPPREAQDYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEV  402 (1293)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~p~~~~~~~~e~~~~~~~~~i~~~l~~ir~~~~~~~~~la~~~n~~~~~~~~~~~~~~~~~~~  402 (1293)
                                                      ++||+|++||++||+||++|++|||+++|+++++++.+++|.++++.+
T Consensus       295 --------------------------------~~~y~I~~~m~~iR~dh~~f~~~~A~~~N~~~~~~~~~~~d~e~~~~~  342 (1232)
T PLN03099        295 --------------------------------QREYLIVNHMGAIRAEHDDFCIRFASAMNQLQLLKSADGVDTAWSREI  342 (1232)
T ss_pred             --------------------------------cchHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhhhcCCccchhhhhhh
Confidence                                            247899999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcccCCCCCCCCCCcccCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Q 000772          403 KGNMYDMVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVELVSYIKNIGS  482 (1293)
Q Consensus       403 ~~~~~~l~l~GlqlLs~Wt~~V~Eq~aWKl~hP~~~~~~~~~~~~p~~~~~YEravRyNYs~~E~~alveiIamIK~l~~  482 (1293)
                      ++++|++||+||||||+||++|||||||||+||++++.  .|++||+++++||||||||||+|||+||||+||||||+++
T Consensus       343 k~~~~d~~l~GlqLLS~WT~~V~Eq~aWKl~~P~~~~~--~n~e~p~~~eeYEravRyNYt~eEr~aLvelIsmIK~l~~  420 (1232)
T PLN03099        343 KENMYDVVVEGFQLLSEWTGRIWEQCAWKFSRPAKDAT--PDPERSGSVTDYEKVVRCNYTAEERKALVELIGYIKGVGS  420 (1232)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--cCCCCCCchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999996554  5889999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhcCCCCCchhhhhccccCCCCCC
Q 000772          483 MMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKDLSRILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRG  562 (1293)
Q Consensus       483 lL~~~e~~l~~~i~~~I~~~~Q~Fvq~~L~~~L~~a~KkKk~~~~il~~iR~~~~DW~~g~~~~~~~~~~~~k~~~~~~~  562 (1293)
                      +|.++|++++++||++||+++|||||++|++|||+++||||++++||++||++++||++|.+|.++++.++ ++++...+
T Consensus       421 ll~~~et~i~~ai~~~I~~~lQdFvQ~~L~~~Lr~~~kkKk~l~~il~~iR~~~~DW~~g~~p~~~~~~~~-~~~~~~~~  499 (1232)
T PLN03099        421 MLERCDTLVADALWETIHAQVQDFVQNKLATMLRTTFRKKKELSRILSDMRTIAADWMANTRPEEKMPSRQ-RENDESRP  499 (1232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCCcccchhhcC-CCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999998888876443 33344567


Q ss_pred             ccccCCCCCCChhHHHHHHHHHHhhhcCCCccccCCccCCCCCCCCchhHHHHHHHHHhhhhhHhhhChHHHHHhhcccc
Q 000772          563 NIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLG  642 (1293)
Q Consensus       563 ~~~~~r~v~Ps~tQL~ml~~li~~~~s~~~~~k~~g~f~~~r~~l~~~~~~~i~~F~~~s~~~~~LLn~s~tL~~~~DLS  642 (1293)
                      ++++||+||||+|||||+|+||+++++||+.+|++|+||.++++++++++++|++||++|+||+|||||++||++|||||
T Consensus       500 ~~i~pr~v~psstQL~~lr~~l~slis~~s~kk~~g~F~~s~~~i~~~~i~~ie~Fl~~S~~f~~LL~~s~tL~~~~Dls  579 (1232)
T PLN03099        500 NFFYPRPVAPTAAQLHCLQFLIHELVSGGSPKKPGGFFGNNGSEIPVNDLKQLETFFNKLAFFPHILDYRATIGHLTDLG  579 (1232)
T ss_pred             cccCcCCCCCcHHHHHHHHHHHHHHhCCCCcccccccccccccCCChHHHHHHHHHHHHhhhHHHHhchHHHHHHhhhhH
Confidence            88999999999999999999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhccCCeeeccCcCcchHHHHHHHhhcCCcchhhhhcccccccchHHHHHHHHHhhhhhHHHHHHHHhhHHHH
Q 000772          643 FLWFREFYLESSRVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYDEIEAEVDHCFDI  722 (1293)
Q Consensus       643 ~LWfREfyLEl~~~iQFPIe~SLPWILtdhiL~s~~~~l~E~ilyPLdLYNDAA~~AL~~lk~qfLYDEIEAEvnLCFDq  722 (1293)
                      ||||||||||++++||||||||||||||||||++++|+|+|+||||||||||||++||++||||||||||||||||||||
T Consensus       580 ~LWFREfyLE~~~~iQFPIe~SLPwIL~dhiL~~~~~~L~E~IfyPLdiYNDAA~~AL~~lk~qfLYDEIEAEv~LCfDq  659 (1232)
T PLN03099        580 FLWFREFYLETSRVIQFPIECSLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQ  659 (1232)
T ss_pred             HHHHHHHHHhhcceeecchhcCccHHHHHHHHcCCChhhhhhhhcchhhhhhHHHHHHHHHHHHhhHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCccccccccCCCCcccCChhHHHHhhcccceecccccchhhHHHHHHHHHHHHHHHHH
Q 000772          723 FVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQPMRLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFL  802 (1293)
Q Consensus       723 lv~kLSd~iF~~yK~~Aas~lLd~~f~~~~~~~~~~~~~~~Ry~~LL~QrhvqLLGRsIDL~~LItQRln~~~~~~l~~a  802 (1293)
                      |||||||+||+|||++|+|++||++|+++|++|.++++||+||++|||||||+||||+||||+||+||||++|+++||.|
T Consensus       660 lv~klsd~iF~~yK~~A~s~~Ld~~f~~~~~~~~~~~~~p~Ry~~LlqQr~v~lLGr~IDL~~LItQRlN~~~~~~Le~~  739 (1232)
T PLN03099        660 LVSKLSESIFTYYKSRAASKLLDPSFLAAVDNGEKFSVQPKRYDALFKMRRVKILGRTIDLASLIAQRMNKIFRENLDFL  739 (1232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCHHHHhhhhccccCCCChHHHHHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCcchHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccccccccccC
Q 000772          803 FDRFESQDLCAIVELEKLLDILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTT  882 (1293)
Q Consensus       803 i~rfEs~dl~~iveLe~ll~v~R~TH~LLse~L~LdpF~~ml~Ean~~~s~~s~~gRIt~hv~~eL~~D~~pNy~yn~~t  882 (1293)
                      |+||||+||||||||+++|+|||+||+||||+|+|||||+||+||||++|++|++||||+||||||++||+||||||++|
T Consensus       740 i~rfEs~dL~~ivele~ll~ilr~TH~LLse~L~LdpFd~m~~Ean~~~s~~S~~sri~~hv~~el~~Df~PNy~~n~~T  819 (1232)
T PLN03099        740 FERFESQDLCSVVELQRLVEILRLTHELLSEHLSIDPFSLMLGEMQENISLVSFSSRLASQIWSEMQNDFLPNFILCNTT  819 (1232)
T ss_pred             HHHHhccCChhHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHhccCCccchhhHHHHHHHHHHhccccccceecCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCccCCCCCCCCCCCCCcceecchhhHHHHHHHHhhcCCCCCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000772          883 QRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKI  962 (1293)
Q Consensus       883 ~RFvrs~~~~~~~~~r~~~P~~~~~~l~Gsk~Ln~A~~~i~~l~~~FvG~pH~~ai~rLLg~~gia~vi~ell~~~~~~i  962 (1293)
                      |||||++.+++++++|+++|+++|+|+||||+||+||++|+++|++|||.|||+|||||||||||||||+||||+++++|
T Consensus       820 ~RFVrs~~~~~~~~~Re~~P~~~~~~~~Gtk~Ln~A~~~~~~ly~~f~G~pH~~ai~rLlG~~~la~vi~~lL~~i~~~i  899 (1232)
T PLN03099        820 QRFVRSSKVPQRPTRRPSVPSAKPSFLCGTQDLNMAHQSFAELHSKFFGLPHMFAIVKLLGSRSLPWLIRALLDHLSQKI  899 (1232)
T ss_pred             chhcccccCcccccccCCCCCCCcceeecchHHHHHHHHHHHHHhcccCcHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHhCCcccCccCCCccchhHHHHHHHHhccccccchHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhHHHH
Q 000772          963 TTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFM 1042 (1293)
Q Consensus       963 ~~~~~~v~~l~~~mP~~~~lp~~dyG~~g~~~~~~~~l~~~~~~dlk~~v~~~frElGN~i~~~~lle~aL~q~e~~d~~ 1042 (1293)
                      +++.|||++|+++|||+|+||++|||++||++||++||+|++.||||+||||+||||||+|+||+|||+||+|+|++||+
T Consensus       900 ~~l~~~v~~L~~~mPk~~~Lp~~dyG~~g~~~~~~~qL~~~~~yelk~ev~q~fREiGn~i~f~~Lld~aL~qee~~~~~  979 (1232)
T PLN03099        900 TTLEPMIEDLREAMPKAIGLPSFDGGVAGCMKIFREQLQWGTKYEGKSEVLRGLKEIGSLIFWMSLLDIAMREVETVQFM  979 (1232)
T ss_pred             HHHHHHHHHHHHhCccccCCCccccCchHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999855999999999999999999999999999999999999


Q ss_pred             hhccccCCCCCCCCcccccCCCCCCchhhhhhHHHHhhhcCCCCCCCchhhhhhHhhhHHhhhhhhccccccHHHHHHHH
Q 000772         1043 QTAPWLGFLPGADGQISYHQDGGDSPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTGSVLEYALAF 1122 (1293)
Q Consensus      1043 ~aaPf~gi~P~~~~~~~~~~~~~~~~~~~l~~~a~~~v~~~~~~~~~~~~~~~~~~a~~~d~l~~~~l~~gs~f~~~L~~ 1122 (1293)
                      |||||+|++|+++||. ++++++|+|++++++++..+|+++|||++|.+|.+|.+||.+||+|||+||||||+||++|+|
T Consensus       980 ~aAPflgi~P~~~gq~-~~~~~~ys~~~~~~~~~~~~~v~~~~~~~~~~~~~~~kq~~~adlL~kerl~~GSvfe~~L~~ 1058 (1232)
T PLN03099        980 QVAPWLGLVPGKEGQL-QQADDNESPLVSLFKEATSAVVSSPGCLNPSAFVSMSKQAEVADLLYKSNLNTGSVLEYTLAF 1058 (1232)
T ss_pred             HhcccccCCCCCchhh-hhhhcccchHHHHHHHHhhhhhcCcccCCchhhcchhhhhhhhhHHHHhhcccccHHHHHHHH
Confidence            9999999999998876 679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcccCCccccCCCCCeeeecccchHhhhhhhhhceecccCCCCCCCcccccCCcccchHHHHHHHhcccccccccc
Q 000772         1123 TSAALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGGCTIIYLLGQQLHFELFD 1202 (1293)
Q Consensus      1123 ~~~~L~~~~~~W~g~p~ngv~~id~~~ef~RlwSalqf~~c~p~~~~e~~~~e~fGdgl~waGc~ii~LLgQq~rFe~lD 1202 (1293)
                      ++++|+++|++|++||+||||+||||+||||||||||||||+|++++|+++||+|||||+|||||||+|||||+|||+||
T Consensus      1059 ~~~~L~~~~~~W~~~P~nGvi~Id~~~eFhRlwSalQfv~c~p~~~~e~~~ee~fGDgl~WaGctii~lLgQq~rFe~lD 1138 (1232)
T PLN03099       1059 TSAVLDRHRSKWSAPPKTGFIDITTSKDFYRIYSGLQYVYLEEISAEGSAFHERLGDSVAWGGCTIVYLLGQQLRFELLD 1138 (1232)
T ss_pred             HHHHHhcccCcccCCCCCCeEecccchHHHHHHHhhhheeeccCCCCcccHHHHhccccccccchHHhhhcchhhhhHHH
Confidence            99999999999999899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhhhhcccCC-----CCCCCCCCCcCHHHHHHHHHHHHHHhHHHHHHHhhcCCCCcchhhhhccCCCCccccc
Q 000772         1203 FSYQVLNVAEVEAISVP-----QSQKHPHFGQGWEALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIK 1277 (1293)
Q Consensus      1203 F~yhil~v~~~d~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ln~~iF~~L~~~~~~~d~~~~~~~~~~~~~~~~~ 1277 (1293)
                      ||||||||+++|++|+.     ++.++|+.|++|++||+||||||+|||||||+|++|||++|+.||+|||||+||||||
T Consensus      1139 F~yhiL~V~e~d~~~~~~~~~~~~~k~~~~~~~l~~~~e~~rr~r~LNnqVFs~L~~~~~~~d~~~~~~k~~g~~~~~~~ 1218 (1232)
T PLN03099       1139 FIYHVLSVSEVESASASHTHRNERLKSPSYHQGWEGFLENARKARRLNNHVFSLLRARCPLEDKLASMIKQSGAPVHRVK 1218 (1232)
T ss_pred             HHHHHHHHHHHhcccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccccccCCCcceeee
Confidence            99999999999999983     4556689999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhhhhcCCC
Q 000772         1278 FENTVSAFETLPQR 1291 (1293)
Q Consensus      1278 ~~~~~s~~~~~~~~ 1291 (1293)
                      ||||||+|+||||+
T Consensus      1219 ~~~t~s~~~~lp~~ 1232 (1232)
T PLN03099       1219 YPNTPSAFETLPQK 1232 (1232)
T ss_pred             cCCChHHHhccCCC
Confidence            99999999999986

>KOG3534 consensus p53 inducible protein PIR121 [General function prediction only]	Back alignment and domain information

>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family	Back alignment and domain information

>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length	Back alignment and domain information

>KOG3951 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal	Back alignment and domain information

>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling	Back alignment and domain information

>PF14744 WASH-7_mid: WASH complex subunit 7	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1293
3p8c_A		1253	Structure And Control Of The Actin Regulatory Wave		1e-144

>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex Length = 1253

Back alignment and structure

Iteration: 1

Score = 509 bits (1312), Expect = e-144, Method: Compositional matrix adjust. Identities = 378/1305 (28%), Positives = 631/1305 (48%), Gaps = 96/1305 (7%) Query: 2 AAVPVEEAIAA---LSTFSLEDEQPEVQGP-SVLVSTERGATASPIEYSDVNAYRLSLS- 56 A V +E+A++ L L D+QP ++ P S L+ T + D NA+ ++ Sbjct: 3 AQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNT----NFEDRNAFVTGIAR 58 Query: 57 --EDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLE 114 E + +N +++EG+E A +LYT+RSC +A+PQ+ + + ++ ++Y +T +VL+ E Sbjct: 59 YIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPE 118 Query: 115 MSRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAK 174 +++L +Q +A + +++R ERR + + +L ++ K +++ LD LKN K Sbjct: 119 VTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLITLGKFINMFAVLDELKNMK 178 Query: 175 ASIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLT 234 S+ ND S YKR Q + D S++E +L +FL+ I +L ++ ++ Sbjct: 179 CSVKNDHSAYKRA-AQFLRKMADPQSIQES-QNLSMFLANHNKITQSLQQQLEVIS---- 232 Query: 235 ENSVEDILQVLIVFAVESLELDFALLFPERHIXXXXXXXXXXXATSSEKDSESL--YKRV 292 E++L ++ V+ E L E+H+ S + L KR+ Sbjct: 233 --GYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRI 290 Query: 293 KINRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQ 352 ++++ FK V+P F D+ + A +K + Y + S T + +P Sbjct: 291 NLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCTSSGSSPQ-------- 342 Query: 353 DYQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKS----TDNADIEWCKEVKGNMYD 408 Y I + IR +H F A N ++ S D E+ K ++D Sbjct: 343 -----YNICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRK-----LFD 392 Query: 409 MVIEGFQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERK 468 + ++G QLLS+W+A + E +WK P + S +YE+ RYNY++EE+ Sbjct: 393 LALQGLQLLSQWSAHVMEVYSWKLVHPTDKY---SNKDCPDSAEEYERATRYNYTSEEKF 449 Query: 469 ALVELVSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKD-LSR 527 ALVE+++ IK + +M R +++ A+ T++A +QDF Q TL LR +KKK+ + Sbjct: 450 ALVEVIAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQS 509 Query: 528 ILSDMRTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPR-AVAPTAAQVHCLQFLIYE 586 +L +R DW + P + +S +I PR AV P++ Q++ ++ ++ Sbjct: 510 VLQAIRKTVCDWETGHE-PFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTMLES 568 Query: 587 VVSGGNLRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWF 646 +++ + K G I E ESFFY H+++++ T+ DL LWF Sbjct: 569 LIADKSGSKKTLRSSLEGPTILDIEKFHRESFFYT-----HLINFSETLQQCCDLSQLWF 623 Query: 647 REFYLESS--RVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLK 704 REF+LE + R IQFPIE S+PW+L DH+LE++ A ++E V+ D+YNDSA AL Sbjct: 624 REFFLELTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFN 683 Query: 705 QRFLYDEIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDN-GEKYSVQPM 763 ++FLYDEIEAEV+ CFD FV +L + IF YYK A S LLD N G + P Sbjct: 684 KQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPS 743 Query: 764 -RLSALFKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLD 822 R L K V+LLGRSI+L LI +R++ ++LE RFES+DL +IVEL+ LL+ Sbjct: 744 NRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLE 803 Query: 823 ILKHTHELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTT 882 I + TH+LLS+ L++D F + E N+S + R+ ++ E+ DFLPN+ +T Sbjct: 804 INRMTHKLLSRYLTLDGFDAMFREANHNVS--APYGRITLHVFWELNYDFLPNYCYNGST 861 Query: 883 QRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLL 942 RF+R+ Q+ P A+P + G++ LN A+ S + F G PH I RLL Sbjct: 862 NRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLL 921 Query: 943 GSRSLPWLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL- 1000 G + + ++ LL + + + T+ + L E +PK L + G G + QL Sbjct: 922 GYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLK 981 Query: 1001 NWGTKSELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISY 1060 + +ELK ++E+G+ + + L++ L + + AP+ LP + Sbjct: 982 DIVEYAELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGE 1041 Query: 1061 HQDGGDSPVVNLFKS-ATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTG-SVLEY 1118 D + + + ++ G P + A DLL K + G S+ E Sbjct: 1042 RLDAKMKRLESKYAPLHLVPLIERLGTPQQIAI------AREGDLLTKERLCCGLSMFEV 1095 Query: 1119 ALAFTSAALDKYCSKWSAT-PKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVL 1177 L + LD W P G + + +F+R++S +Q Y + Sbjct: 1096 ILTRIRSFLDD--PIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCF 1153 Query: 1178 GDSVAWGGCTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQ-----GWE 1232 GD + W GC II LLGQQ F + DF Y +L V QKH + + Sbjct: 1154 GDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKV-----------QKHDGKDEIIKNVPLK 1202 Query: 1233 ALIEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRIK 1277 ++E ++K + LN+ + ++L DK + G P+ ++ Sbjct: 1203 KMVERIRKFQILNDEIITIL-------DKYLKSGDGEGTPVEHVR 1240

PyMOL of 3p8c

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1293
3p8c_A		1253	Cytoplasmic FMR1-interacting protein 1; actin poly	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1253	Back alignment and structure

 Score = 1134 bits (2933), Expect = 0.0
 Identities = 364/1293 (28%), Positives = 623/1293 (48%), Gaps = 70/1293 (5%)

Query: 2    AAVPVEEAIA---ALSTFSLEDEQPEVQGPSVLVSTERGATASPIEYSDVNAYRLSLS-- 56
            A V +E+A++    L    L D+QP ++ P   +  +         + D NA+   ++  
Sbjct: 3    AQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQ---PNFNTNFEDRNAFVTGIARY 59

Query: 57   -EDTKALNQLNTLIQEGKEMASVLYTYRSCVKALPQLPNSMKHSQADLYLETYQVLDLEM 115
             E     + +N +++EG+E A +LYT+RSC +A+PQ+  + + ++ ++Y +T +VL+ E+
Sbjct: 60   IEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEV 119

Query: 116  SRLREIQRWQASAASKLAADMQRFSRPERRINGPTITHLWSMLKLLDVLVQLDHLKNAKA 175
            ++L     +Q +A  +   +++R    ERR +  +  +L ++ K +++   LD LKN K 
Sbjct: 120  TKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLITLGKFINMFAVLDELKNMKC 179

Query: 176  SIPNDFSWYKRTFTQVSVQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNKSLTE 235
            S+ ND S YKR   Q   +  D  S++E   +L +FL+    I  +L  ++  ++     
Sbjct: 180  SVKNDHSAYKRAA-QFLRKMADPQSIQES-QNLSMFLANHNKITQSLQQQLEVISG---- 233

Query: 236  NSVEDILQVLIVFAVESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLY--KRVK 293
               E++L  ++   V+  E    L   E+H+LL+V+   + L   S  +   L   KR+ 
Sbjct: 234  --YEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRIN 291

Query: 294  INRLINIFKSDPVIPAFPDLHLSPAAILKELSMYFQKFSAQTRLLTLPAPHELPPREAQD 353
            ++++   FK   V+P F D+ +  A  +K  + Y +  S  T   +  +P          
Sbjct: 292  LSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCTSSGSSPQ--------- 342

Query: 354  YQRHYLIANHIGGIRAEHDDFTIRFASAMNQLLLLKSTDNADIEWCKEVKGNMYDMVIEG 413
                Y I   +  IR +H  F    A   N  ++  S      +   E +  ++D+ ++G
Sbjct: 343  ----YNICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYR-KLFDLALQG 397

Query: 414  FQLLSKWTARIWEQCAWKFSRPYKDAVPSETNEASASYSDYEKVVRYNYSAEERKALVEL 473
             QLLS+W+A + E  +WK   P          +   S  +YE+  RYNY++EE+ ALVE+
Sbjct: 398  LQLLSQWSAHVMEVYSWKLVHPTD---KYSNKDCPDSAEEYERATRYNYTSEEKFALVEV 454

Query: 474  VSYIKNIGSMMLRSDTLVADALWETIHAEVQDFVQNTLATMLRTTFRKKKD-LSRILSDM 532
            ++ IK +  +M R +++   A+  T++A +QDF Q TL   LR   +KKK+ +  +L  +
Sbjct: 455  IAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAI 514

Query: 533  RTLSADWMANNSRPEAEQQSMHHVGEESRGNIFYPRAVAPTAAQVHCLQFLIYEVVSGGN 592
            R    DW   +              +         RAV P++ Q++ ++ ++  +++  +
Sbjct: 515  RKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS 574

Query: 593  LRKPGGLFGNTGSEIPVNELKQLESFFYKLSFFLHILDYTATVSTLTDLGFLWFREFYLE 652
                 G      S +    +  +E F  +  F+ H+++++ T+    DL  LWFREF+LE
Sbjct: 575  -----GSKKTLRSSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLE 629

Query: 653  SS--RVIQFPIECSLPWMLVDHVLESQNAGLLESVMMPFDIYNDSAQQALVVLKQRFLYD 710
             +  R IQFPIE S+PW+L DH+LE++ A ++E V+   D+YNDSA  AL    ++FLYD
Sbjct: 630  LTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYD 689

Query: 711  EIEAEVDHCFDIFVSRLCETIFTYYKSWAASELLDPSFLFSSDNGEKYSVQP--MRLSAL 768
            EIEAEV+ CFD FV +L + IF YYK  A S LLD        N       P   R   L
Sbjct: 690  EIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETL 749

Query: 769  FKMTRVKLLGRSINLRSLIAERMNKVFRENLEFLFDRFESQDLCAIVELEKLLDILKHTH 828
             K   V+LLGRSI+L  LI +R++    ++LE    RFES+DL +IVEL+ LL+I + TH
Sbjct: 750  LKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSIVELDGLLEINRMTH 809

Query: 829  ELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRS 888
            +LLS+ L++D F  +  E   N+S  +   R+   ++ E+  DFLPN+    +T RF+R+
Sbjct: 810  KLLSRYLTLDGFDAMFREANHNVS--APYGRITLHVFWELNYDFLPNYCYNGSTNRFVRT 867

Query: 889  SKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLP 948
                    Q+   P A+P +  G++ LN A+ S    +  F G PH   I RLLG + + 
Sbjct: 868  VLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIA 927

Query: 949  WLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNW-GTKS 1006
             ++  LL  + + +  T+   +  L E +PK   L   + G  G +     QL      +
Sbjct: 928  VVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYA 987

Query: 1007 ELKAEVLHGIKEIGSVLYWMGLLDIVLREVDTTHFMQTAPWLGFLPGADGQISYHQDGGD 1066
            ELK      ++E+G+ + +  L++  L   +    +  AP+   LP    +     D   
Sbjct: 988  ELKTVCFQNLREVGNAILFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERLDAKM 1047

Query: 1067 SPVVNLFKSATAAIVSNPGCPNPTSFHTMSKQAEAADLLYKANMNTG-SVLEYALAFTSA 1125
              + + +    A +   P      +       A   DLL K  +  G S+ E  L    +
Sbjct: 1048 KRLESKY----APLHLVPLIERLGT-PQQIAIAREGDLLTKERLCCGLSMFEVILTRIRS 1102

Query: 1126 ALDKYCSKWSATPKTGFIDITTSKDFYRIYSGLQIGYLEESSQSPSNNHKVLGDSVAWGG 1185
             LD         P  G + +    +F+R++S +Q  Y            +  GD + W G
Sbjct: 1103 FLDDPI-WRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAG 1161

Query: 1186 CTIIYLLGQQLHFELFDFSYQVLNVAEVEAISVPQSQKHPHFGQGWEALIEAMKKARRLN 1245
            C II LLGQQ  F + DF Y +L V + +                 + ++E ++K + LN
Sbjct: 1162 CMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVP------LKKMVERIRKFQILN 1215

Query: 1246 NHVFSMLKARCPLEDKTACAIKQSGAPLHRIKF 1278
            + + ++L       DK   +    G P+  ++ 
Sbjct: 1216 DEIITIL-------DKYLKSGDGEGTPVEHVRC 1241

PyMOL of 3p8c

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00