Citrus Sinensis ID: 000773
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1293 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XIE2 | 1469 | ABC transporter G family | yes | no | 0.979 | 0.861 | 0.750 | 0.0 | |
| Q94A18 | 1416 | ABC transporter G family | no | no | 0.957 | 0.874 | 0.742 | 0.0 | |
| Q7PC86 | 1442 | ABC transporter G family | no | no | 0.960 | 0.861 | 0.737 | 0.0 | |
| Q5Z9S8 | 1500 | Pleiotropic drug resistan | yes | no | 0.986 | 0.850 | 0.736 | 0.0 | |
| Q7FMW4 | 1509 | Pleiotropic drug resistan | yes | no | 0.990 | 0.848 | 0.688 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.972 | 0.867 | 0.599 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.974 | 0.864 | 0.596 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.974 | 0.864 | 0.596 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.960 | 0.866 | 0.601 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.971 | 0.855 | 0.592 | 0.0 |
| >sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 2002 bits (5186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 974/1298 (75%), Positives = 1120/1298 (86%), Gaps = 32/1298 (2%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL++ L+V G+ITYNGY+L+EFVP+KTSAYISQND+HVG
Sbjct: 199 MTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVG 258
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
MTVKETLDFSARC GVGTRY+LL+ELARREKDAGIFPEA++DLFMKA+A +GV++SL+T
Sbjct: 259 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVT 318
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTLKILGLDICKDTIVGD+M RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 319 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 378
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+ +AT+LMSLLQPAPETFDLFDDIIL+SEGQIVYQGPR+ +LEFFES
Sbjct: 379 FQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESF 438
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTS+KDQEQYW + ++PY YI V+EFA+R+KSFH+G + N+L+
Sbjct: 439 GFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELA 498
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VPFDKS+GH+AA+VF KY+V K ELLK+CWDKEWLL++RN+F YV KTVQ++I+A I ST
Sbjct: 499 VPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITST 558
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
+FLRT M+TRNE D L+IGALLF MIINMFNGFAE+AM + R PVFYKQRDL+F+P WT
Sbjct: 559 LFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWT 618
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
F+LPTFLL IP SI ES W+VVTYY+IGFAP+ASRFFK FLLVFLIQQMAA++FRLIA
Sbjct: 619 FSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIAS 678
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTM+IANTGGALTLL+VFLLGGF++PKG+IP+WW W YWVSPL Y +N VNEM+AP
Sbjct: 679 VCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAP 738
Query: 541 RWMNRLASDNVT-KLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPP 599
RWMN++AS N T KLG VLN +D+ ++WYWI AL F LFN+LFT L YLNP
Sbjct: 739 RWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPL 798
Query: 600 GKPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCS 659
GK +L EE E E++ + KD RSLS++D N E+A+ RM
Sbjct: 799 GKKAGLLPEE-------ENEDADQ---------GKDPMRRSLSTADGNRRGEVAMGRMSR 842
Query: 660 RSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDK 719
DS EA+ G K+GMVLPFTPLAMSFD V Y+VDMP EM++QGV E +
Sbjct: 843 -----------DSAAEASGGAGNKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETR 891
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA 779
L+LL VT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGD+RISGFPK QETFA
Sbjct: 892 LQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFA 951
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
RISGYCEQ DIHSPQVTV+ESLI+SAFLRL KEV K++K++FV++VM+LVEL+SL+D+IV
Sbjct: 952 RISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIV 1011
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
GLPGVTGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTV
Sbjct: 1012 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTV 1071
Query: 900 VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPA 959
VCTIHQPSIDIFEAFDEL+L+KRGGQVIY+GPLG+NSHKV+EY+E+ PGV KI EKYNPA
Sbjct: 1072 VCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPA 1131
Query: 960 TWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTW 1019
TWMLE SS AAE++L +DFA+ Y S+L QRNKALV ELS PP GA DLYFATQ+SQ+TW
Sbjct: 1132 TWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTW 1191
Query: 1020 GQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMY 1079
GQFKSCLWKQWWTYWRSPDYNLVR FTLA +L+IGTVFW++G R + DLTM+IGA+Y
Sbjct: 1192 GQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALY 1251
Query: 1080 AAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTL 1139
AAI+FVGI+NCSTVQP+VAVERTVFYRERAAGMYSA+PYAI+QV E+PYVL QT YY+L
Sbjct: 1252 AAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYAISQVTCELPYVLIQTVYYSL 1311
Query: 1140 IVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLF 1199
IVYAMV FEW A KF+WF FV++FSFLY+TYYGMMTVS+TPN QVA+IFA+AFY +FNLF
Sbjct: 1312 IVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLF 1371
Query: 1200 SGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDH 1255
SGFFIPRP WWIWYYWICPVAWTVYGLIVSQYGDVE I V G A T+K YIEDH
Sbjct: 1372 SGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQYIEDH 1431
Query: 1256 FGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
+G++ DFMGPVAAVL+AFTVFFAF+FAFCI+TLNFQTR
Sbjct: 1432 YGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
Key factor that controls the extent of cell death in the defense response. Neccessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94A18|AB29G_ARATH ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1996 bits (5172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/1297 (74%), Positives = 1096/1297 (84%), Gaps = 59/1297 (4%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL++ LKV G +TYNG+ L EFVPQKTSAYISQNDVHVG
Sbjct: 175 MTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVG 234
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
MTV+ETLDFSARC GVGTRY+LLSEL RREKDAGI PE E+DLFMK+ A V+SSLIT
Sbjct: 235 VMTVQETLDFSARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLIT 294
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTL+ILGLDICKDT+VGDEM RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 295 DYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 354
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
YQIVKCLQ+IV TDAT+LMSLLQPAPETF+LFDDIILLSEGQIVYQGPR+ VL FFE+C
Sbjct: 355 YQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETC 414
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CP+RKGTADFLQEVTSRKDQEQYWAD KPY YISV+EF+ RF++FH+G +LE LS
Sbjct: 415 GFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLS 474
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VP+D+ + H A++VFKK++VPK +L K CWD+E LL+KRN+F Y++KTVQ+II+A+IAST
Sbjct: 475 VPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIAST 534
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
V+LRT M T+NE+DGA++IGAL+FSMI+NMFNGFAELA+ IQR PVFYKQRDL+FHP WT
Sbjct: 535 VYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 594
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
F+LPTFLL IPISIFESVVWV +TYY IGFAPE SRF K+ L++FL QQMA +FR IA
Sbjct: 595 FSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAA 654
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
CR+MI+ANTGGAL +L++FLLGGFIVP+G+IP WW+W YWVSP+AY Y+A VNEM AP
Sbjct: 655 TCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAP 714
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RW+N+ +SDN T LG AVL FDI +WYWIG + GF VLFN+L T L +LNP
Sbjct: 715 RWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLE 774
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
K QAV+S+ E+ EE
Sbjct: 775 KQQAVVSK-----------ENTEE------------------------------------ 787
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
N N +K + KRGMVLPFTPL MSFD+V YYVDMP EMKEQGV++DKL
Sbjct: 788 --------NRAENGSKSKSIDVKRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKL 839
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL EVT FRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK+QETFAR
Sbjct: 840 QLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFAR 899
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
ISGYCEQNDIHSPQVTVKESLIYSAFLRL KEV+K +K+ FV+EVM+LVELESLKDA+VG
Sbjct: 900 ISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVG 959
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPG+TGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 960 LPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1019
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLLLKRGGQVIY+GPLG+NSHK+IEY++AI GVPKIKEKYNPAT
Sbjct: 1020 CTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPAT 1079
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLEVSS AAE +L +DFA+ YK+SSL Q+NK LV ELSTPP+GA DLYF+T++SQS G
Sbjct: 1080 WMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLG 1139
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFKSCLWKQW TYWR+PDYNL R FTLA A+M+G++FWKVGTKRE+ DLT +IGAMYA
Sbjct: 1140 QFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYA 1199
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A+LFVG++N S+VQP++AVER+VFYRERAA MYSALPYA+AQV+ EIPYVL QTTYYTLI
Sbjct: 1200 AVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLI 1259
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
+YAM+ FEWT AKF+WF+FV+F SFLYFTYYGMMTV++TPN QVAA+FA AFY LFNLFS
Sbjct: 1260 IYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFS 1319
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GF IPRP WWIWYYWICPVAWTVYGLIVSQYGDVED+I VPGMA PTIK YIE+H+
Sbjct: 1320 GFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHY 1379
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
GY+ DFM P+A VLV FT+FFAFMFAF I+TLNFQ R
Sbjct: 1380 GYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC86|AB35G_ARATH ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1988 bits (5151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1297 (73%), Positives = 1107/1297 (85%), Gaps = 55/1297 (4%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL++ L V GE+TYNGYRLNEFVP KTSAYISQND+HVG
Sbjct: 197 MTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVG 256
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
MTVKETLDFSARC GVGTRY+LL+ELARREKDAGIFPEA++DLFMKA+A +GV+SSLIT
Sbjct: 257 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLIT 316
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTLKILGLDICKDTIVGD+M RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 317 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 376
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+T+AT+L+SLLQPAPETFDLFDDIILLSEGQIVYQGPR+ +LEFFES
Sbjct: 377 FQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESF 436
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTS+KDQEQYW D ++PYRYI V+EFA+ FK FH+G L N+LS
Sbjct: 437 GFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELS 496
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VP+DKS+ H+AA++F KY++ K ELLK+CWDKEW+L+KRNSF YV KTVQ+II+A I ST
Sbjct: 497 VPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITST 556
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
++LRT MHTRNE D +++G+LLF+MI+NMFNG AE+AMTIQR PVFYKQRDL+FHP WT
Sbjct: 557 LYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWT 616
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+TLPTFLL IPISIFES W+VVTYY+IG+AP+A RFFK FL++FLIQQMAA +FR IA
Sbjct: 617 YTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIAS 676
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
CRTM IANTGG L LLVVFL GGF++P+ +IP WW W YW+SPL+Y +NA VNE++AP
Sbjct: 677 TCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAP 736
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMN+++ ++ T+LG +VLN +D+ ++WYWIG L GF V+FN FT L YL+P G
Sbjct: 737 RWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLG 796
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
K QA+L +E E EE+K + +N EM
Sbjct: 797 KAQAILPKE-------EDEEAK-------------------GKAGSNKETEM-------- 822
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
+ V+ K+GMVLPFTPLAMSFD V Y+VDMP EM+EQGV E +L
Sbjct: 823 -----------------ESVSAKKGMVLPFTPLAMSFDDVKYFVDMPAEMREQGVQETRL 865
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL VTSAFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGD+R+SGFPKKQETFAR
Sbjct: 866 QLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPKKQETFAR 925
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
ISGYCEQ DIHSPQVTV+ESLI+SAFLRLAKEVSKEDK++FV++VM+LVEL L+DAIVG
Sbjct: 926 ISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVG 985
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPGVTGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVV
Sbjct: 986 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 1045
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGG VIYSGPLGRNSHKV+EY+E+ PGVPKI EKYNPAT
Sbjct: 1046 CTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPAT 1105
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLE SS AAE++LG+DFA+ YK+S+LCQRNKALV ELS PP+GA DLYFATQ+SQ+TWG
Sbjct: 1106 WMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWG 1165
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFKSCLWKQWWTYWRSPDYNLVR FTLA +LMIG+VFW++G KR + DLTM+IGA+YA
Sbjct: 1166 QFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYA 1225
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A++FVGI+NCSTVQP+VAVERTVFYRE+AAGMYSA+PYAI+QV E+PYVL QTTYY+LI
Sbjct: 1226 AVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLI 1285
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
+Y+MV FEW A+KF WF F+ +FSFLY+TYYGMMTVS+TPN QVA+IFA+AFY +FNLFS
Sbjct: 1286 IYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFS 1345
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GFFIPRP WW+WYYWICPVAWT+YGLI SQYGDVE I++ G A T+K YI+D +
Sbjct: 1346 GFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVKQYIKDQY 1405
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
G+E D+MGPVA VLV FTVFFAF+FAFCIKTLNFQ+R
Sbjct: 1406 GFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5Z9S8|PDR12_ORYSJ Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1976 bits (5119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/1308 (73%), Positives = 1105/1308 (84%), Gaps = 32/1308 (2%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ L+ GE+TYNG+ L EFV QKT+AYISQ DVHVG
Sbjct: 210 MTLLLGPPSSGKTTLLLALAGKLDPSLRRGGEVTYNGFELEEFVAQKTAAYISQTDVHVG 269
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTVKETLDFSARC GVGT+Y+LL+ELARREK+AGI PE E+DLFMKAT+MEGVESSL T
Sbjct: 270 EMTVKETLDFSARCQGVGTKYDLLTELARREKEAGIRPEPEVDLFMKATSMEGVESSLQT 329
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTL+ILGLDIC DTIVGD+M RGISGGQKKRVTTGEMIVGPTK LFMDEISTGLDSSTT
Sbjct: 330 DYTLRILGLDICADTIVGDQMQRGISGGQKKRVTTGEMIVGPTKVLFMDEISTGLDSSTT 389
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+ +ATILMSLLQPAPETF+LFDDIILLSEGQIVYQGPRE VLEFFESC
Sbjct: 390 FQIVKCLQQIVHLGEATILMSLLQPAPETFELFDDIILLSEGQIVYQGPREYVLEFFESC 449
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTS+KDQEQYWAD+ +PYRYISV+EFA RFK FH+G+ LEN LS
Sbjct: 450 GFRCPERKGTADFLQEVTSKKDQEQYWADKHRPYRYISVSEFAQRFKRFHVGLQLENHLS 509
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VPFDK++ H+AA+VF K +V ELLKA + KEWLLIKRNSFVY+ KT+QLIIVA++AST
Sbjct: 510 VPFDKTRSHQAALVFSKQSVSTTELLKASFAKEWLLIKRNSFVYIFKTIQLIIVALVAST 569
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VFLRT+MHTRN +DG ++IGALLFS+I+NMFNGFAEL++TI R PVF+K RDL+F+P W
Sbjct: 570 VFLRTQMHTRNLDDGFVYIGALLFSLIVNMFNGFAELSLTITRLPVFFKHRDLLFYPAWI 629
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
FTLP +LRIP SI ES+VWV+VTYYTIGFAPEA RFFK LLVFLIQQMA +FR AG
Sbjct: 630 FTLPNVILRIPFSIIESIVWVIVTYYTIGFAPEADRFFKQLLLVFLIQQMAGGLFRATAG 689
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
+CR+MIIA TGGAL LL+ F+LGGF++PK IP WW WGYWVSPL YGYNA AVNE Y+P
Sbjct: 690 LCRSMIIAQTGGALALLIFFVLGGFLLPKAFIPKWWIWGYWVSPLMYGYNALAVNEFYSP 749
Query: 541 RWMNRLASDN---VTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLN 597
RWMN+ DN +LG A++ +I ++W+WIGAA L GF + FNVLFT +L+YLN
Sbjct: 750 RWMNKFVLDNNGVPKRLGIALMEGANIFTDKNWFWIGAAGLLGFTMFFNVLFTLSLVYLN 809
Query: 598 PPGKPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRM 657
P GKPQAV+SEE A E E + + VR S K S+ N +EM R+
Sbjct: 810 PLGKPQAVISEETA----KEAEGNGDARHTVRNGSTK---------SNGGNHKEMREMRL 856
Query: 658 CSR---SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQG 714
+R S+ N +SR A P+RGMVLPFTPL+MSFD V YYVDMP EMK+QG
Sbjct: 857 SARLSNSSSNGVSRLMSIGSNEA---GPRRGMVLPFTPLSMSFDDVNYYVDMPAEMKQQG 913
Query: 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774
V +D+L+LL +VT +FRP VL ALMGVSGAGKTTLMDVLAGRKTGGYIEGD+RISG+PK
Sbjct: 914 VVDDRLQLLRDVTGSFRPAVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDMRISGYPKN 973
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLA-----KEVSKEDKIIFVEEVMDLV 829
QETFARISGYCEQNDIHSPQVTV+ESLIYSAFLRL +E++ + KI FV+EVM+LV
Sbjct: 974 QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPEKIGDQEITDDIKIQFVDEVMELV 1033
Query: 830 ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 889
EL++LKDA+VGLPG+TGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV
Sbjct: 1034 ELDNLKDALVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1093
Query: 890 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGV 949
RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG LGRNS K+IEY+EAIPGV
Sbjct: 1094 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGQLGRNSQKMIEYFEAIPGV 1153
Query: 950 PKIKEKYNPATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLY 1009
PKIK+KYNPATWMLEVSS AAEVRL MDFA+ YK+S L ++NK LVN+LS P G DL+
Sbjct: 1154 PKIKDKYNPATWMLEVSSVAAEVRLNMDFAEYYKTSDLYKQNKVLVNQLSQPEPGTSDLH 1213
Query: 1010 FATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTT 1069
F T+YSQST GQF++CLWKQW TYWRSPDYNLVR FTL AL++GT+FWK+GTK +
Sbjct: 1214 FPTKYSQSTIGQFRACLWKQWLTYWRSPDYNLVRFSFTLFTALLLGTIFWKIGTKMGNAN 1273
Query: 1070 DLTMIIGAMYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPY 1129
L M+IGAMY A++F+GI+NC+TVQP+V++ERTVFYRERAAGMYSA+PYAIAQV++EIPY
Sbjct: 1274 SLRMVIGAMYTAVMFIGINNCATVQPIVSIERTVFYRERAAGMYSAMPYAIAQVVMEIPY 1333
Query: 1130 VLFQTTYYTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFA 1189
V QT YYTLIVYAM+SF+WTAAKF+WFFFV++FSFLYFTYYGMMTV+I+PNH+VAAIFA
Sbjct: 1334 VFVQTAYYTLIVYAMMSFQWTAAKFFWFFFVSYFSFLYFTYYGMMTVAISPNHEVAAIFA 1393
Query: 1190 AAFYALFNLFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQK 1245
AAFY+LFNLFSGFFIPRP WWIWYYW+CP+AWTVYGLIV+QYGD+E ISVPG + +
Sbjct: 1394 AAFYSLFNLFSGFFIPRPRIPKWWIWYYWLCPLAWTVYGLIVTQYGDLEQIISVPGQSNQ 1453
Query: 1246 PTIKAYIEDHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
TI Y+ HFGY FM VA VLV F VFFAFM+A CIK LNFQ R
Sbjct: 1454 -TISYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAICIKKLNFQHR 1500
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7FMW4|PDR15_ORYSJ Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1872 bits (4850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 894/1298 (68%), Positives = 1075/1298 (82%), Gaps = 17/1298 (1%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ L+ GE+TYNGY L+EFVPQKT+AYISQ+DVH G
Sbjct: 224 MTLLLGPPSSGKTTLLLALAGKLDPTLETSGEVTYNGYGLDEFVPQKTAAYISQHDVHAG 283
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTVKETLDFSA+C GVG RYELL ELA++E+ GI+P+ E+DLFMKAT++EG S+L T
Sbjct: 284 EMTVKETLDFSAKCQGVGQRYELLKELAKKERQLGIYPDPEVDLFMKATSVEG--STLQT 341
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DY L+ILGLD+C D IVGDE+ RGISGGQKKR+TT EM+VGPTK LFMDEISTGLDSSTT
Sbjct: 342 DYILRILGLDMCADVIVGDELRRGISGGQKKRLTTAEMLVGPTKVLFMDEISTGLDSSTT 401
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QI++C+QQIVH+ +AT+L+SLLQPAPE F+LFDD++LLSEGQIVYQGPRE VLEFFE C
Sbjct: 402 FQIIRCIQQIVHMGEATVLVSLLQPAPEIFELFDDVMLLSEGQIVYQGPREHVLEFFERC 461
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKG ADFLQEVTS+KDQEQYW KPYRY+SV EF +FK FH+G L+ QLS
Sbjct: 462 GFRCPERKGVADFLQEVTSKKDQEQYWIQSEKPYRYVSVPEFVAKFKKFHMGKSLKKQLS 521
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VPF+K + H++A+VF K +V +ELLK KEWLL+KRNSFVY+ KTVQ I+VA+IAST
Sbjct: 522 VPFNKGKIHKSALVFSKQSVSTLELLKTSCSKEWLLMKRNSFVYIFKTVQGILVALIAST 581
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VFLRT+++TR+E+DG ++IGAL+F MI NMF+GFA+L++T+ R PVFYK RD +F+ WT
Sbjct: 582 VFLRTQLNTRDEDDGQIYIGALIFVMITNMFSGFADLSLTLARLPVFYKHRDFLFYRPWT 641
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
F LP L+RIP S+FES++WV +TYYT+GFAPEASRFFK+ L+VF++QQMAA +FR+ AG
Sbjct: 642 FALPNVLVRIPSSLFESIIWVAITYYTMGFAPEASRFFKHLLVVFMLQQMAAGLFRVTAG 701
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
+CRT+++ NT G+L +L++F+LGGFI+PK IP WW W YW SPL Y Y AF+ NEM++P
Sbjct: 702 LCRTVVVTNTAGSLAVLIMFVLGGFILPKDAIPKWWVWAYWCSPLTYAYIAFSSNEMHSP 761
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWM++ D +LG AVL N + +++WYWI AL GF +LFNVLF+ +LMYLNP G
Sbjct: 762 RWMDKFVPDG-KRLGVAVLENSGVFTNKEWYWIATGALLGFTILFNVLFSLSLMYLNPVG 820
Query: 601 KPQAVLSEEA-AAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCS 659
KPQ++L EE + E + E + +++ ++ + P S+ + D I+++
Sbjct: 821 KPQSILPEETDSQENIQEGKNKAHIKQIITVETPEPVSPNSIITLDK------VIQQL-- 872
Query: 660 RSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDK 719
R S S + AA AP RGMVLPF PL MSF+ + YYVDMP EMK QGV DK
Sbjct: 873 RGYSANTSDRSHSYINAAGRTAPGRGMVLPFEPLYMSFNEINYYVDMPLEMKSQGVTADK 932
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA 779
L+LL+ ++ AFRPGVL ALMGVSGAGKTTLMDVL+GRKTGGYIEG+I ISG+PK Q TFA
Sbjct: 933 LQLLSGISGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIEGEIYISGYPKNQATFA 992
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
RISGYCEQNDIHSPQ+TV+ESL++SAFLRL KEV+ ++K IFV+EVM+LVEL LKDAIV
Sbjct: 993 RISGYCEQNDIHSPQITVRESLLFSAFLRLPKEVNDQEKKIFVDEVMELVELTGLKDAIV 1052
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
GLPGV GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTV
Sbjct: 1053 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTV 1112
Query: 900 VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPA 959
VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG NSHKV+EY+EAIPGVPKI+E NPA
Sbjct: 1113 VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGTNSHKVVEYFEAIPGVPKIEENRNPA 1172
Query: 960 TWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTW 1019
TWML+VSSAA+EVRL +DFA+ Y+SS++ QR KALV ELS PP G+ DLYF +QYSQST+
Sbjct: 1173 TWMLDVSSAASEVRLEIDFAEYYRSSTMHQRTKALVKELSNPPPGSDDLYFPSQYSQSTF 1232
Query: 1020 GQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMY 1079
QFK CLWKQWWTYWRSPDYNLVR F L ALM+GT+FW+VG K E + DL +IIG+MY
Sbjct: 1233 NQFKLCLWKQWWTYWRSPDYNLVRIFFALFTALMLGTIFWRVGHKMESSKDLLVIIGSMY 1292
Query: 1080 AAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTL 1139
AA+LFVG N TVQPVVAVERTVFYRERAAGMYSA+PYA+AQV+VEIPYV +T YTL
Sbjct: 1293 AAVLFVGFENSVTVQPVVAVERTVFYRERAAGMYSAIPYALAQVVVEIPYVFVETVIYTL 1352
Query: 1140 IVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLF 1199
IVY M+SF+WT AKF+WFF+V+FF+FLYFTYYGMM VS++PN QVA+I AAFY LFNLF
Sbjct: 1353 IVYPMMSFQWTPAKFFWFFYVSFFTFLYFTYYGMMNVSVSPNLQVASILGAAFYTLFNLF 1412
Query: 1200 SGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDH 1255
SGFFIPRP WW+WYYW+CPVAWTVYGLIVSQYGDVED I+VPG + + ++ +I+D+
Sbjct: 1413 SGFFIPRPKIPKWWVWYYWLCPVAWTVYGLIVSQYGDVEDFITVPGQSDQ-QVRPFIKDY 1471
Query: 1256 FGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
FGY+PDFMG VAAVL FTVFFAF +A+ I+TLNFQ R
Sbjct: 1472 FGYDPDFMGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1610 bits (4169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 779/1300 (59%), Positives = 977/1300 (75%), Gaps = 42/1300 (3%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPP SGKTTLLLALAGKL++DLKV G++TYNG+ ++EFVP++T+AYISQ+D+H+G
Sbjct: 186 MTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIG 245
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTV+ETL FSARC GVGTRYE+L+ELARREK A I P+ +ID++MKA+AM G ESS++T
Sbjct: 246 EMTVRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVT 305
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DY LKILGLDIC DT+VG+EM RGISGGQ+KRVTTGEM+VGP + LFMDEISTGLDSSTT
Sbjct: 306 DYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 365
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
YQIV L+Q +H+ T ++SLLQPAPET++LFDDIILLS+GQ+VYQGPRE VLEFFE
Sbjct: 366 YQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFM 425
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CP RKG ADFLQEVTSRKDQ QYW R +PYR++ V +FA+ F+SFH+G ++N+LS
Sbjct: 426 GFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELS 485
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
PFD+++ H AA+ KY V + ELLKA D+E LL+KRN+F+Y+ K V L ++A+I T
Sbjct: 486 EPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMT 545
Query: 361 VFLRTRMHTRNEND-GALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVW 419
F RT M R++ D G +++GAL F++ MFNGFAELAMT+ + PVF+KQRDL+F P W
Sbjct: 546 TFFRTSM--RHDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAW 603
Query: 420 TFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIA 479
+T+P+++L+IPI+ E V+V +TYY IGF P SRFFK +LL+ + QM++A+FR IA
Sbjct: 604 AYTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIA 663
Query: 480 GVCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYA 539
G+ R M++++T G L+LL LGGFI+ + + WW WGYW+SPL+Y NA + NE
Sbjct: 664 GIGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLG 723
Query: 540 PRWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPP 599
W L +NVT LG +VL + I WYWIG AL G+ +LFN+L+T L L+P
Sbjct: 724 HSWSQILPGENVT-LGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPF 782
Query: 600 GKPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCS 659
A +SE+A E A E +KD+ S
Sbjct: 783 TDSHASMSEDALKEKHANLTGEVVE-------GQKDT---------------------KS 814
Query: 660 RSNPNELSRNDDSN--LEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAE 717
R ELS D N + +A A ++GMVLPF PL++SF+ V Y VDMP MK QG+ E
Sbjct: 815 RKQELELSHIADQNSGINSADSSASRKGMVLPFAPLSISFNDVRYSVDMPEAMKAQGITE 874
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET 777
D+L LL V+ +FRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG+PKKQET
Sbjct: 875 DRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKKQET 934
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
FARISGYCEQNDIHSP VTV ESL++SA+LRL EV E + +F+EEVMDLVEL SL+ A
Sbjct: 935 FARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEARKMFIEEVMDLVELTSLRGA 994
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 897
+VGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGR
Sbjct: 995 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGR 1054
Query: 898 TVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYN 957
TVVCTIHQPSIDIFEAFDEL L+KRGG+ IY GP+G+NS K+IEY+E I GV +IK+ YN
Sbjct: 1055 TVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYN 1114
Query: 958 PATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQS 1017
PATWMLEV+S+A E LG+DF++ Y+ S L QRNK L+ ELSTPP G+ DL F TQYS+S
Sbjct: 1115 PATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRS 1174
Query: 1018 TWGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGA 1077
Q +CLWKQ W+YWR+P Y VR FT+ ALM GT+FW +GT+ + DL +G+
Sbjct: 1175 FITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGS 1234
Query: 1078 MYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYY 1137
MYAA+L++G+ N +VQPVV VERTVFYRERAAGMYSA PYA QV +E+PY++ QT Y
Sbjct: 1235 MYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIY 1294
Query: 1138 TLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFN 1197
++VY+M+ FEWT AKF W+ F +F+ LYFT+YGMM V +TPN +AAI ++AFY ++N
Sbjct: 1295 GVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWN 1354
Query: 1198 LFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIE 1253
LFSG+ IPRP WW WY WICPVAWT+YGL+ SQ+GD++ + T+ ++
Sbjct: 1355 LFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLE----GDTRTVAQFVT 1410
Query: 1254 DHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
D+FG+ +F+ VA V V F V FAF+F+F I NFQ R
Sbjct: 1411 DYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1598 bits (4139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/1299 (59%), Positives = 978/1299 (75%), Gaps = 39/1299 (3%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPP SGKTTLLLALAG+L +DLK G++TYNG+ + EFVP++T+AYISQ+D+H+G
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTV+ETL FSARC GVG+R+++L+EL+RREK A I P+A+ID FMKA AM G E+++ T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DY LKILGL+IC DT+VGDEM RGISGGQ+KRVTTGEM+VGP + LFMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIV L+Q VH+ T ++SLLQPAPET++LFDDIILLS+GQIVYQGPRE VLEFFES
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFEST 431
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CP+RKG ADFLQEVTS+KDQ QYWA KPYR+++V EF + F+SFH G + N+L+
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VPFDKS+ H AA+ +Y P ELLKA D+E LL+KRNSFVY+ +T QL++V++IA T
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
+F RT+M + G +++GAL F +++ MFNGF+ELA+T+ + PVF+KQRDL+F+P W+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+T+P+++L+IPI+ E +V +TYY IGF FFK +LL+ I QMA ++FR I G
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
R MI+AN + LL+ +LGGFI+ + Q+ WW WGYW+SP+ Y NA +VNE+
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 RWMNRLASDNVTK--LGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNP 598
W N++ + + + LG VL + + WYWIG A+ GF +LFN LFT L YL P
Sbjct: 732 SW-NKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRP 790
Query: 599 PGKPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMC 658
G + +SEE E KE+ + + D + S S+ RR
Sbjct: 791 YGNSRQSVSEE----------ELKEKRANLNGEIVGDVHLSSGST-----------RRPM 829
Query: 659 SRSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAED 718
N+ + DD +RGMVLPFTPL++SFD+V Y VDMP EMK QGVA+D
Sbjct: 830 GNGTENDSTIVDDDT------EVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADD 883
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETF 778
+L LL V+ +FRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEG I ISG+PKKQETF
Sbjct: 884 RLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETF 943
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
AR+SGYCEQNDIHSPQVTV ESL++SA+LRL ++V + +F+EEVM+LVEL+SL+DA+
Sbjct: 944 ARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDAL 1003
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
VGLPGV GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRT
Sbjct: 1004 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRT 1063
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNP 958
VVCTIHQPSIDIFEAFDEL L+KRGG+ IY+GPLG +S ++I+Y+E+IPGV KIK+ YNP
Sbjct: 1064 VVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNP 1123
Query: 959 ATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQST 1018
ATWMLEV++ E LG+DF+D YK S L QRNKAL+ +LS P + DLYF TQYSQS+
Sbjct: 1124 ATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSS 1183
Query: 1019 WGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAM 1078
Q +CLWKQ +YWR+P YN VR FT AL+ GT+FW +G K + DL +G+M
Sbjct: 1184 LTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSM 1243
Query: 1079 YAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYT 1138
YAA+LF+G+ NC++VQPVVAVERTVFYRERAAGMYSA PYA QV++EIPY L Q T Y
Sbjct: 1244 YAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYG 1303
Query: 1139 LIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNL 1198
+IVYAM+ FEWTAAKF+W+ F F+ LYFT+YGMM V +TPN+ +A+I ++AFYA++NL
Sbjct: 1304 IIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNL 1363
Query: 1199 FSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIED 1254
FSGF IPRP WW WY W CPVAWT+YGL+VSQ+GD+E M +K ++E+
Sbjct: 1364 FSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETP-----MEDGTPVKVFVEN 1418
Query: 1255 HFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
+FG++ ++G VA V+ AF FA +F F I NFQ R
Sbjct: 1419 YFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1597 bits (4135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/1299 (59%), Positives = 978/1299 (75%), Gaps = 39/1299 (3%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPP SGKTTLLLALAG+L +DLK G++TYNG+ + EFVP++T+AYISQ+D+H+G
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTV+ETL FSARC GVG+R+++L+EL+RREK A I P+A+ID FMKA AM G E+++ T
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNT 311
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DY LKILGL+IC DT+VGDEM RGISGGQ+KRVTTGEM+VGP + LFMDEISTGLDSSTT
Sbjct: 312 DYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTT 371
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIV L+Q VH+ T ++SLLQPAPET++LFDDIILLS+GQIVYQGPRE VLEFFES
Sbjct: 372 FQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESM 431
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CP+RKG ADFLQEVTS+KDQ QYWA KPYR+++V EF + F+SFH G + N+L+
Sbjct: 432 GFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELA 491
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VPFDKS+ H AA+ +Y P ELLKA D+E LL+KRNSFVY+ +T QL++V++IA T
Sbjct: 492 VPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMT 551
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
+F RT+M + G +++GAL F +++ MFNGF+ELA+T+ + PVF+KQRDL+F+P W+
Sbjct: 552 LFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWS 611
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+T+P+++L+IPI+ E +V +TYY IGF FFK +LL+ I QMA ++FR I G
Sbjct: 612 YTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGG 671
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
R MI+AN + LL+ +LGGFI+ + Q+ WW WGYW+SP+ Y NA +VNE+
Sbjct: 672 AARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGH 731
Query: 541 RWMNRLASDNVTK--LGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNP 598
W N++ + + + LG VL + + WYWIG A+ GF +LFN LFT L YL P
Sbjct: 732 SW-NKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRP 790
Query: 599 PGKPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMC 658
G + +SEE E KE+ + + D + S S+ RR
Sbjct: 791 YGNSRQSVSEE----------ELKEKRANLNGEIVGDVHLSSGST-----------RRPM 829
Query: 659 SRSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAED 718
N+ + DD +RGMVLPFTPL++SFD+V Y VDMP EMK QGVA+D
Sbjct: 830 GNGTENDSTIVDDDT------EVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADD 883
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETF 778
+L LL V+ +FRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEG I ISG+PKKQETF
Sbjct: 884 RLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETF 943
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
AR+SGYCEQNDIHSPQVTV ESL++SA+LRL ++V + +F+EEVM+LVEL+SL+DA+
Sbjct: 944 ARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDAL 1003
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
VGLPGV GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRT
Sbjct: 1004 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRT 1063
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNP 958
VVCTIHQPSIDIFEAFDEL L+KRGG+ IY+GPLG +S ++I+Y+E+IPGV KIK+ YNP
Sbjct: 1064 VVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSELIKYFESIPGVSKIKDGYNP 1123
Query: 959 ATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQST 1018
ATWMLEV++ E LG+DF+D YK S L QRNKAL+ +LS P + DLYF TQYSQS+
Sbjct: 1124 ATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSS 1183
Query: 1019 WGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAM 1078
Q +CLWKQ +YWR+P YN VR FT AL+ GT+FW +G K + DL +G+M
Sbjct: 1184 LTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSM 1243
Query: 1079 YAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYT 1138
YAA+LF+G+ NC++VQPVVAVERTVFYRERAAGMYSA PYA QV++EIPY L Q T Y
Sbjct: 1244 YAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYG 1303
Query: 1139 LIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNL 1198
+IVYAM+ FEWTAAKF+W+ F F+ LYFT+YGMM V +TPN+ +A+I ++AFYA++NL
Sbjct: 1304 IIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNL 1363
Query: 1199 FSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIED 1254
FSGF IPRP WW WY W CPVAWT+YGL+VSQ+GD+E M +K ++E+
Sbjct: 1364 FSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETP-----MEDGTPVKVFVEN 1418
Query: 1255 HFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
+FG++ ++G VA V+ AF FA +F F I NFQ R
Sbjct: 1419 YFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1597 bits (4134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 780/1297 (60%), Positives = 982/1297 (75%), Gaps = 55/1297 (4%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ LKV G+++YNG+ L+EFVPQ+T+AYISQ+D+H+G
Sbjct: 189 MTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIG 248
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTV+ETL+FSARC GVG+R+E+L+EL+RREK A I P+A+ID++MKA A EG E++++T
Sbjct: 249 EMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVT 308
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DY LKILGLDIC DT+VGD+M RGISGGQKKRVTTGEM+VGP+K LFMDEISTGLDSSTT
Sbjct: 309 DYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTT 368
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
Y IV L+Q V + T ++SLLQPAPET++LFDDIILLS+G IVYQGPR+ VLEFFES
Sbjct: 369 YSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESM 428
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CP+RKG ADFLQEVTS+KDQ+QYW+ R++PYR+I+ EFA ++SFH+G L ++L+
Sbjct: 429 GFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELA 488
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
PFDK++ H AA+ +KY + K ELLK C ++E LL+KRNSFVY+ K QL I+A+I T
Sbjct: 489 TPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMT 548
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
+F RT M +DG ++ GAL F +I+ MFNG +ELAMTI + PVFYKQRDL+F P W
Sbjct: 549 LFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWA 608
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+ +P+++L+IP+++ E +WV++TYY IGF P +RF K FLL+ ++ QMA+ MFR I
Sbjct: 609 YAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGA 668
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
V RTM +A+T G+ LL+ F LGGF++ + + +WW WGYW+SP+ Y N+ VNE
Sbjct: 669 VGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGK 728
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
+W + + N T LG+ V+ + WYWIG AL GF V+FN ++ L YLNP
Sbjct: 729 KWNHIVPGGNET-LGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFD 787
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
KPQAVL E+ E E+ E V Q ++S+D +S S
Sbjct: 788 KPQAVLPEDG------ENAENGE----VSSQ---------ITSTDGGDS--------ISE 820
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
S N K+GMVLPF P +++FD V Y VDMP EMKEQG ED+L
Sbjct: 821 SQNN------------------KKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRL 862
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
LL V+ AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYI+G+I+ISG+PKKQETFAR
Sbjct: 863 VLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFAR 922
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
ISGYCEQNDIHSP VTV ESL+YSA+LRL ++V ++ + +FV+EVM+LVEL L+ A+VG
Sbjct: 923 ISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVG 982
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPGV GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 983 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1042
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDEL L+KRGGQ IY GPLGR+S +I+Y+E+ PGV KIKE YNPAT
Sbjct: 1043 CTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPAT 1102
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLEV+++A E+ LG+DF + YK+S L +RNKAL++EL P G+KDL+F TQYSQS W
Sbjct: 1103 WMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWT 1162
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
Q +CLWKQ W+YWR+P Y VR FT AL+ GT+FW +GTK + DL +G+MYA
Sbjct: 1163 QCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYA 1222
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A+LF+G+ N S+VQPVVA+ERTVFYRERAAGMYSA+PYA QV +EIPY+ Q+ +Y +I
Sbjct: 1223 AVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGII 1282
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
VYAM+ FEW KF+W+ F+ FF+ LYFT+YGMM V++TPN VA+I AA FY ++NLFS
Sbjct: 1283 VYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFS 1342
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GF IPRP WW WYYW PVAWT+YGL+ SQ+GD++ +S T++ ++ +F
Sbjct: 1343 GFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLS-----DNETVEQFLRRYF 1397
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
G++ DF+G VAAVL A+ FAF FAF IK NFQ R
Sbjct: 1398 GFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1589 bits (4115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 770/1300 (59%), Positives = 971/1300 (74%), Gaps = 44/1300 (3%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPP SGKTT LLALAG+L +DLK G++TYNG+++ +FVPQ+T+AYISQ+D+H+G
Sbjct: 206 MTLLLGPPGSGKTTFLLALAGRL-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIG 264
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTV+ETL FSARC GVG+R+++L+EL RREK A I P+A++D FMKA+AMEG ES+LIT
Sbjct: 265 EMTVRETLSFSARCQGVGSRFDMLTELTRREKAANIKPDADVDAFMKASAMEGQESNLIT 324
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DY LKILGL+IC DT+VGD+M RGISGGQ+KRVTTGEM+VGP FMDEISTGLDSSTT
Sbjct: 325 DYILKILGLEICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTT 384
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVK L+Q +H+ T ++SLLQPAPET+DLFDDIILLS+G IVYQGPRE VLEFFE
Sbjct: 385 FQIVKSLRQTIHILGGTAVISLLQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELM 444
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKG ADFLQEVTSRKDQ+QYWA KPYRY+ + EFA+ F+SFH G + N+L+
Sbjct: 445 GFKCPERKGVADFLQEVTSRKDQKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELA 504
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
PFDKS+ H AA+ +Y V MELLKA D+E LLIKRNSFVY+ +T+QL+ V+ +A T
Sbjct: 505 TPFDKSKSHPAALTTSRYGVSAMELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMT 564
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VF RT+MH + DG +F+GAL F++++ M NG +EL +TI + PVF+KQRDL+F P WT
Sbjct: 565 VFFRTKMHRDSVADGVIFMGALFFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWT 624
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+T+P+++L+ P+S E + ++YY IGF P RFFK +LL+ + QMAAA+FR + G
Sbjct: 625 YTIPSWILKSPMSFIEVGGFCFMSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGG 684
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
R +I+AN G+ LL+ +LGGFI+ + ++ WW WGYW+SP+ Y NA +VNE
Sbjct: 685 AARNLIVANVFGSFMLLIFMVLGGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGH 744
Query: 541 RWMNRLASDNVTK--LGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNP 598
W +++ +++++ LG L + I WYWIG AL GFI+LFN+LFT L YL P
Sbjct: 745 SW-DKVLNNSLSNETLGVQALMSRGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKP 803
Query: 599 PGKPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDAN-NSREMAIRRM 657
GK Q +SEE L AN N + + M
Sbjct: 804 DGKSQPSISEE------------------------------ELKEKQANINGNVLDVDTM 833
Query: 658 CSRSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAE 717
S +N + + A +RGMVLPFTPL+++F+ + Y VDMP EMK G+ E
Sbjct: 834 ASSNNLAIVGSTGTGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKAHGIVE 893
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET 777
D+L LL V+ FRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEG+I ISG+PKKQET
Sbjct: 894 DRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQET 953
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
FAR+SGYCEQNDIHSPQVTV ESL++SA+LRL K+V + +F+EEVM+LVEL+ L+DA
Sbjct: 954 FARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDA 1013
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 897
+VGLPGV GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGR
Sbjct: 1014 LVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGR 1073
Query: 898 TVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYN 957
TVVCTIHQPSIDIFEAFDEL L+KRGG+ IY GPLG +S ++I+Y+E I GV KI + YN
Sbjct: 1074 TVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVSKITDGYN 1133
Query: 958 PATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQS 1017
PATWMLEV++ + E L +DF D Y+ S L QRNKAL+ ELSTPP G+ +LYF TQYSQS
Sbjct: 1134 PATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQS 1193
Query: 1018 TWGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGA 1077
Q +CLWKQ +YWR+P YN +R FT AL+ GT+FW +G K + DL +G+
Sbjct: 1194 FLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGS 1253
Query: 1078 MYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYY 1137
MYAA+LF+G+ N +VQPVV+VERTVFYRERAAGMYSALPYA QV +E PY L Q+ Y
Sbjct: 1254 MYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIY 1313
Query: 1138 TLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFN 1197
++IVY+M+ F+WT AKF+W+ F FF+ LYFT+YGMM V +TP++ VA+I ++AFYA++N
Sbjct: 1314 SIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSSAFYAIWN 1373
Query: 1198 LFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIE 1253
LF+GF I RP WW WY WICPVAWT+YGLIVSQYGD+ V M + ++E
Sbjct: 1374 LFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDI-----VTPMDDGIPVNVFVE 1428
Query: 1254 DHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
++F ++ ++G VA V+VAFT+ FAF+F F I LNFQ R
Sbjct: 1429 NYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1293 | ||||||
| 297743203 | 1493 | unnamed protein product [Vitis vinifera] | 1.0 | 0.866 | 0.839 | 0.0 | |
| 359482570 | 1438 | PREDICTED: ABC transporter G family memb | 0.960 | 0.863 | 0.811 | 0.0 | |
| 224054398 | 1436 | ABC transporter family, pleiotropic drug | 0.975 | 0.878 | 0.802 | 0.0 | |
| 255549836 | 1472 | ATP-binding cassette transporter, putati | 0.996 | 0.875 | 0.795 | 0.0 | |
| 394994948 | 1498 | pleiotropic drug resistance transporter | 1.0 | 0.863 | 0.808 | 0.0 | |
| 255549838 | 1497 | ATP-binding cassette transporter, putati | 0.999 | 0.863 | 0.786 | 0.0 | |
| 394994943 | 1498 | pleiotropic drug resistance transporter | 1.0 | 0.863 | 0.804 | 0.0 | |
| 394994946 | 1498 | pleiotropic drug resistance transporter | 1.0 | 0.863 | 0.806 | 0.0 | |
| 449466941 | 1475 | PREDICTED: ABC transporter G family memb | 0.987 | 0.865 | 0.804 | 0.0 | |
| 449489384 | 1484 | PREDICTED: pleiotropic drug resistance p | 0.994 | 0.866 | 0.774 | 0.0 |
| >gi|297743203|emb|CBI36070.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2245 bits (5818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1092/1301 (83%), Positives = 1206/1301 (92%), Gaps = 8/1301 (0%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ LKVRGE+TYNG+RLNEFVPQKTSAYISQNDVH+G
Sbjct: 193 MTLLLGPPSSGKTTLLLALAGKLDSSLKVRGEVTYNGHRLNEFVPQKTSAYISQNDVHIG 252
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTVKETLDFSARC GVGTRYELL+ELARREK+AGI PEAE+DLFMKATAMEGVESSLIT
Sbjct: 253 EMTVKETLDFSARCQGVGTRYELLTELARREKEAGIVPEAEVDLFMKATAMEGVESSLIT 312
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTL+ILGLDIC+DT+VGDEM RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 313 DYTLRILGLDICQDTMVGDEMQRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+T+ATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR +LEFFESC
Sbjct: 373 FQIVKCLQQIVHLTEATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRAHILEFFESC 432
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTSRKDQEQYWAD+SKPYRYI V+EFANRFKSFH+GM LEN+LS
Sbjct: 433 GFRCPERKGTADFLQEVTSRKDQEQYWADKSKPYRYIPVSEFANRFKSFHVGMRLENELS 492
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
+P+D+SQ H+AA+VFKKY+VPKMELLK +DKEWLLIKRN+FVYV KTVQ+IIVA+IAST
Sbjct: 493 IPYDRSQSHQAALVFKKYSVPKMELLKTSFDKEWLLIKRNAFVYVFKTVQIIIVALIAST 552
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VFLRT+MHTRNE+DG L++GALLFSMIINMFNGF EL++TI R PVFYKQRDL+FHP W
Sbjct: 553 VFLRTKMHTRNESDGGLYVGALLFSMIINMFNGFYELSLTIVRLPVFYKQRDLLFHPAWV 612
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+TLPTFLLRIPISIFES+VW+V+TYYTIGFAPEASRFFK L+VFLIQQMAA +FRLIAG
Sbjct: 613 YTLPTFLLRIPISIFESIVWMVITYYTIGFAPEASRFFKELLVVFLIQQMAAGLFRLIAG 672
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTMIIANTGGALT+L+VFLLGGFIVP G+IP WW WGYW SPL YG+NA AVNE+YAP
Sbjct: 673 VCRTMIIANTGGALTVLLVFLLGGFIVPYGEIPKWWIWGYWSSPLTYGFNALAVNELYAP 732
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMN+ ASDN T+LG +VL+ FD+ ++W+WIGAAAL GF +LFNVLFTF+LMYLNP G
Sbjct: 733 RWMNKRASDNSTRLGDSVLDAFDVFHDKNWFWIGAAALLGFAILFNVLFTFSLMYLNPFG 792
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
QA++SEE A E+ AEQEESKEEPRL R +K+DS PRSLSSSD NNSREMAIRRM SR
Sbjct: 793 NRQAIMSEETATEIEAEQEESKEEPRLRRNSTKRDSIPRSLSSSDGNNSREMAIRRMNSR 852
Query: 661 ----SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVA 716
SN N +SR+ D++L+AA GVAPKRGMVLPFTPLAMSFD+V YYVDMPPEMKEQGV
Sbjct: 853 LSSLSNGNGMSRSGDASLDAANGVAPKRGMVLPFTPLAMSFDNVNYYVDMPPEMKEQGVT 912
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 776
ED+L+LL +VT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE
Sbjct: 913 EDRLQLLRDVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 972
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
TFARISGYCEQ+DIHSPQVTV+ESLI+SAFLRL KEVSKE+K+IFV+EVM+LVE+++LKD
Sbjct: 973 TFARISGYCEQSDIHSPQVTVRESLIFSAFLRLPKEVSKEEKMIFVDEVMELVEMDNLKD 1032
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
AIVGLPG+TGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG
Sbjct: 1033 AIVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1092
Query: 897 RTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKY 956
RTVVCTIHQPSIDIFEAFDELLL+KRGGQVIYSGPLGRNSHK+IEY+EAIP VPKIKEKY
Sbjct: 1093 RTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPQVPKIKEKY 1152
Query: 957 NPATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQ 1016
NPATWMLEVSS AAE+RL MDFA+ YKSSSL QRNKALV ELSTPP GAKDLYF TQYSQ
Sbjct: 1153 NPATWMLEVSSIAAEIRLEMDFAEHYKSSSLYQRNKALVKELSTPPPGAKDLYFLTQYSQ 1212
Query: 1017 STWGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIG 1076
S WGQFKSC+WKQWWTYWRSPDYNLVR FTLA AL++GT+FWKVGTKRE+T DLTMIIG
Sbjct: 1213 SIWGQFKSCIWKQWWTYWRSPDYNLVRFSFTLAAALLVGTIFWKVGTKRENTNDLTMIIG 1272
Query: 1077 AMYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTY 1136
AMYAA+LFVGI+NCSTVQP+VAVERTVFYRERAAGMYSA+PYA+AQV+ EIPYV QT Y
Sbjct: 1273 AMYAAVLFVGINNCSTVQPIVAVERTVFYRERAAGMYSAMPYAMAQVVAEIPYVFVQTAY 1332
Query: 1137 YTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALF 1196
Y+LIVYA+VSF+WTAAKF+WFFFV+FFSFLYFTYYGMMTVSITPNHQVA+IFAAAFYA+F
Sbjct: 1333 YSLIVYALVSFQWTAAKFFWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFAAAFYAVF 1392
Query: 1197 NLFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYI 1252
NLFSGFFIPRP WWIWYYWICPVAWTVYGLIVSQYGD+ED+I VPGM+ PTIK Y+
Sbjct: 1393 NLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDLEDTIKVPGMSPDPTIKWYV 1452
Query: 1253 EDHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
++HFGY+P+FM PVA VLV F VFFAFM+A+CIKTLNFQ R
Sbjct: 1453 QNHFGYDPNFMAPVAVVLVGFGVFFAFMYAYCIKTLNFQMR 1493
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482570|ref|XP_002278313.2| PREDICTED: ABC transporter G family member 29-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2155 bits (5584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1052/1297 (81%), Positives = 1161/1297 (89%), Gaps = 55/1297 (4%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ LKVRGE+TYNG+RLNEFVPQKTSAYISQNDVH+G
Sbjct: 193 MTLLLGPPSSGKTTLLLALAGKLDSSLKVRGEVTYNGHRLNEFVPQKTSAYISQNDVHIG 252
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTVKETLDFSARC GVGTRYELL+ELARREK+AGI PEAE+DLFMKATAMEGVESSLIT
Sbjct: 253 EMTVKETLDFSARCQGVGTRYELLTELARREKEAGIVPEAEVDLFMKATAMEGVESSLIT 312
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTL+ILGLDIC+DT+VGDEM RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 313 DYTLRILGLDICQDTMVGDEMQRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+T+ATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR +LEFFESC
Sbjct: 373 FQIVKCLQQIVHLTEATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRAHILEFFESC 432
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTSRKDQEQYWAD+SKPYRYI V+EFANRFKSFH+GM LEN+LS
Sbjct: 433 GFRCPERKGTADFLQEVTSRKDQEQYWADKSKPYRYIPVSEFANRFKSFHVGMRLENELS 492
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
+P+D+SQ H+AA+VFKKY+VPKMELLK +DKEWLLIKRN+FVYV KTVQ+IIVA+IAST
Sbjct: 493 IPYDRSQSHQAALVFKKYSVPKMELLKTSFDKEWLLIKRNAFVYVFKTVQIIIVALIAST 552
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VFLRT+MHTRNE+DG L++GALLFSMIINMFNGF EL++TI R PVFYKQRDL+FHP W
Sbjct: 553 VFLRTKMHTRNESDGGLYVGALLFSMIINMFNGFYELSLTIVRLPVFYKQRDLLFHPAWV 612
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+TLPTFLLRIPISIFES+VW+V+TYYTIGFAPEASRFFK L+VFLIQQMAA +FRLIAG
Sbjct: 613 YTLPTFLLRIPISIFESIVWMVITYYTIGFAPEASRFFKELLVVFLIQQMAAGLFRLIAG 672
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTMIIANTGGALT+L+VFLLGGFIVP G+IP WW WGYW SPL YG+NA AVNE+YAP
Sbjct: 673 VCRTMIIANTGGALTVLLVFLLGGFIVPYGEIPKWWIWGYWSSPLTYGFNALAVNELYAP 732
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMN+ ASDN T+LG +VL+ FD+ ++W+WIGAAAL GF +LFNVLFTF+LMYLNP G
Sbjct: 733 RWMNKRASDNSTRLGDSVLDAFDVFHDKNWFWIGAAALLGFAILFNVLFTFSLMYLNPFG 792
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
QA++SEE A E+ AE + +S DA N
Sbjct: 793 NRQAIMSEETATEIEAESGD---------------------ASLDAAN------------ 819
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
GVAPKRGMVLPFTPLAMSFD+V YYVDMPPEMKEQGV ED+L
Sbjct: 820 ------------------GVAPKRGMVLPFTPLAMSFDNVNYYVDMPPEMKEQGVTEDRL 861
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL +VT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR
Sbjct: 862 QLLRDVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 921
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
ISGYCEQ+DIHSPQVTV+ESLI+SAFLRL KEVSKE+K+IFV+EVM+LVE+++LKDAIVG
Sbjct: 922 ISGYCEQSDIHSPQVTVRESLIFSAFLRLPKEVSKEEKMIFVDEVMELVEMDNLKDAIVG 981
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPG+TGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 982 LPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1041
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGGQVIYSGPLGRNSHK+IEY+EAIP VPKIKEKYNPAT
Sbjct: 1042 CTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPQVPKIKEKYNPAT 1101
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLEVSS AAE+RL MDFA+ YKSSSL QRNKALV ELSTPP GAKDLYF TQYSQS WG
Sbjct: 1102 WMLEVSSIAAEIRLEMDFAEHYKSSSLYQRNKALVKELSTPPPGAKDLYFLTQYSQSIWG 1161
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFKSC+WKQWWTYWRSPDYNLVR FTLA AL++GT+FWKVGTKRE+T DLTMIIGAMYA
Sbjct: 1162 QFKSCIWKQWWTYWRSPDYNLVRFSFTLAAALLVGTIFWKVGTKRENTNDLTMIIGAMYA 1221
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A+LFVGI+NCSTVQP+VAVERTVFYRERAAGMYSA+PYA+AQV+ EIPYV QT YY+LI
Sbjct: 1222 AVLFVGINNCSTVQPIVAVERTVFYRERAAGMYSAMPYAMAQVVAEIPYVFVQTAYYSLI 1281
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
VYA+VSF+WTAAKF+WFFFV+FFSFLYFTYYGMMTVSITPNHQVA+IFAAAFYA+FNLFS
Sbjct: 1282 VYALVSFQWTAAKFFWFFFVSFFSFLYFTYYGMMTVSITPNHQVASIFAAAFYAVFNLFS 1341
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GFFIPRP WWIWYYWICPVAWTVYGLIVSQYGD+ED+I VPGM+ PTIK Y+++HF
Sbjct: 1342 GFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDLEDTIKVPGMSPDPTIKWYVQNHF 1401
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
GY+P+FM PVA VLV F VFFAFM+A+CIKTLNFQ R
Sbjct: 1402 GYDPNFMAPVAVVLVGFGVFFAFMYAYCIKTLNFQMR 1438
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054398|ref|XP_002298240.1| ABC transporter family, pleiotropic drug resistance protein [Populus trichocarpa] gi|222845498|gb|EEE83045.1| ABC transporter family, pleiotropic drug resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2139 bits (5541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1041/1298 (80%), Positives = 1158/1298 (89%), Gaps = 37/1298 (2%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
M LLLGPPSSGKTTLLLALAGKL+ LKV G++TYNGY EF+P+K+SAYISQNDVH+G
Sbjct: 171 MALLLGPPSSGKTTLLLALAGKLDPSLKVTGDLTYNGYEFKEFMPRKSSAYISQNDVHIG 230
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTVKETLDFSARC GVGTRY+LLSELARREKDAGIFPEAE+DLFMKATAMEGVESSLIT
Sbjct: 231 EMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVESSLIT 290
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTLKILGLDICKDTIVGD+M RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 291 DYTLKILGLDICKDTIVGDDMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 350
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
YQIVKCLQ IVH T+ATIL+SLLQPAPETFDLFDDIILLSEGQIVYQGPRE +L FFESC
Sbjct: 351 YQIVKCLQHIVHYTEATILVSLLQPAPETFDLFDDIILLSEGQIVYQGPREHILAFFESC 410
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTS+KDQEQYW DR+KPYRY++V EF RFK FH+GM LEN+LS
Sbjct: 411 GFRCPERKGTADFLQEVTSKKDQEQYWDDRNKPYRYVTVPEFVERFKRFHVGMRLENELS 470
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VPFDK+QGH+AA+ F KY+VP+MELLKACWD+EW+L+KRN++VYV+KTVQLII+AII ST
Sbjct: 471 VPFDKTQGHKAALSFSKYSVPRMELLKACWDREWILVKRNAYVYVAKTVQLIIMAIIMST 530
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VF++++MHTRNE DGA++IGALLF+MIINMFNGFAEL++ I+R PVFYKQRDL FHP WT
Sbjct: 531 VFIKSKMHTRNEGDGAVYIGALLFTMIINMFNGFAELSLVIKRLPVFYKQRDLQFHPAWT 590
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
FTLPTFLL++P+SI ESVVWV +TYY++GFAP+ASRFFK LLVF IQQMA+ +FRLIAG
Sbjct: 591 FTLPTFLLQLPMSIIESVVWVSITYYSVGFAPDASRFFKQLLLVFFIQQMASGLFRLIAG 650
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTMIIANTGGALTLL+VFLLGGFI+PKG IP+WW WGYWVSPL+YG+NA AVNEM AP
Sbjct: 651 VCRTMIIANTGGALTLLLVFLLGGFILPKGAIPDWWGWGYWVSPLSYGFNAIAVNEMSAP 710
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMN+ +SD T LG AVL NFD+ ++WYWIG AA+ GF VLFNVLFTF L Y +P G
Sbjct: 711 RWMNKNSSDASTSLGTAVLKNFDVYTDKNWYWIGTAAILGFAVLFNVLFTFALAYFSPAG 770
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
K QA++SEE E R +S + SLS S+ NN+ +
Sbjct: 771 KSQAIISEETTKE---------------RTRSTQ-----SLSHSNGNNTSK--------- 801
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
P + D ++EAA GVAPKRGMVLPF+PLAMSFDS+ Y+VDMPPEMKEQGV ED+L
Sbjct: 802 -EPKNIGNAD--SIEAANGVAPKRGMVLPFSPLAMSFDSMNYFVDMPPEMKEQGVPEDRL 858
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL EVT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEG+I+ISGFPKKQETFAR
Sbjct: 859 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGEIKISGFPKKQETFAR 918
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
ISGYCEQNDIHSPQVTVKESLIYSAFLRL KEVSK++K+IFV+EVM+LVEL +LKDA+VG
Sbjct: 919 ISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVSKQEKMIFVDEVMELVELNNLKDAVVG 978
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPG+TGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 979 LPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1038
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGGQ IYSGPLGRNSHK+IEY+EAIPGVPKIKEKYNPAT
Sbjct: 1039 CTIHQPSIDIFEAFDELLLMKRGGQAIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1098
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLEVSS AAEVRLGMDFA+ Y+SSSL QRNKALV ELSTPP GA +LYFATQYS+S WG
Sbjct: 1099 WMLEVSSVAAEVRLGMDFAEQYRSSSLHQRNKALVKELSTPPPGATNLYFATQYSESAWG 1158
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFKSCLWKQWWTYWRSPDYNLVR FTL CALM+G++FWKVGTKR+ ++DL MIIGAMYA
Sbjct: 1159 QFKSCLWKQWWTYWRSPDYNLVRYFFTLVCALMVGSIFWKVGTKRDSSSDLNMIIGAMYA 1218
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
++LFVGI+NCSTVQPVVAVERTVFYRE+AAGMYSALPYAIAQV+ EIPYV QTTYYTLI
Sbjct: 1219 SVLFVGINNCSTVQPVVAVERTVFYREKAAGMYSALPYAIAQVVCEIPYVFVQTTYYTLI 1278
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
VYAMVSFEWTAAKF+WFFFV FFSFLYFTYYGMMTVS+TPNHQVAAIFAA FY+LFNLFS
Sbjct: 1279 VYAMVSFEWTAAKFFWFFFVNFFSFLYFTYYGMMTVSVTPNHQVAAIFAATFYSLFNLFS 1338
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMA-QKPTIKAYIEDH 1255
GFFIPRP WW+WYYWICPVAWTVYGLIVSQYGDV D+I+VPG A PTIK YI+++
Sbjct: 1339 GFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVMDTINVPGRAGADPTIKVYIQEN 1398
Query: 1256 FGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
FGY+PDFMG VAAVLV FTVFFAF+FAFCI+TLNFQTR
Sbjct: 1399 FGYDPDFMGQVAAVLVGFTVFFAFLFAFCIRTLNFQTR 1436
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549836|ref|XP_002515969.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223544874|gb|EEF46389.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2130 bits (5520), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1032/1298 (79%), Positives = 1160/1298 (89%), Gaps = 9/1298 (0%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
M LLLGPPSSGK+TLLLALAGKL+ LKV+GEI+YNG+RL+EFVP+KTSAYISQNDVH+G
Sbjct: 179 MALLLGPPSSGKSTLLLALAGKLDPSLKVQGEISYNGHRLDEFVPRKTSAYISQNDVHLG 238
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEA-EIDLFMKATAMEGVESSLI 119
MTVKETLDFSA+C GVGTRY+LLSELARREK+AGI PEA E+DLFMKATAM GV+S+L
Sbjct: 239 VMTVKETLDFSAKCQGVGTRYDLLSELARREKNAGIHPEAAEVDLFMKATAMRGVDSNLF 298
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
TDYTLKILGLDICKDTIVGDEM RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST
Sbjct: 299 TDYTLKILGLDICKDTIVGDEMLRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 358
Query: 180 TYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFES 239
TYQIVKCLQQIVH+T+ TILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR+ VLEFFES
Sbjct: 359 TYQIVKCLQQIVHLTEGTILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDYVLEFFES 418
Query: 240 CGFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQL 299
CGF CPERKGTADFLQEVTSRKDQEQYWADR+ PYRYISV EF +FK FH+G+ L+++L
Sbjct: 419 CGFRCPERKGTADFLQEVTSRKDQEQYWADRNIPYRYISVPEFVQKFKRFHVGIDLKHEL 478
Query: 300 SVPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAS 359
S+P DKSQ HRAA+VF +Y+V +ELL+ACWDKEWLLIKRN+FVY+SK QLIIVA+IAS
Sbjct: 479 SIPSDKSQSHRAALVFTRYSVSNLELLRACWDKEWLLIKRNAFVYISKGAQLIIVAVIAS 538
Query: 360 TVFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVW 419
TVFLRT+MH+RNE DG L+IGAL FS+I NMFNG+AEL++ I R PVFYKQRDL+FHP W
Sbjct: 539 TVFLRTKMHSRNEEDGELYIGALTFSVIHNMFNGYAELSLMISRLPVFYKQRDLLFHPAW 598
Query: 420 TFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIA 479
TFTLPT LLR+PISI ES+VWVV+ Y+TIGF PEA RFFK +LVFLIQQMAAA+FRLIA
Sbjct: 599 TFTLPTLLLRVPISILESIVWVVIAYFTIGFGPEAGRFFKQLVLVFLIQQMAAAIFRLIA 658
Query: 480 GVCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYA 539
+CRTMIIANTGGAL LL++F+LGGFI+ KG+IP W W YW+SP+ YG+NA AVNEM++
Sbjct: 659 SLCRTMIIANTGGALILLLIFMLGGFILHKGEIPRGWAWAYWLSPITYGHNAIAVNEMFS 718
Query: 540 PRWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPP 599
RWMN+LASDNVTKLG AVLNNFDIPA DWYWIGA AL GF ++FNVLFTF LMYLNPP
Sbjct: 719 SRWMNKLASDNVTKLGIAVLNNFDIPADEDWYWIGAVALLGFTIVFNVLFTFALMYLNPP 778
Query: 600 GKPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCS 659
GK QA++SEE A + +++E K+E R+ R +SKKDS+ RS+S S N R++ IR + S
Sbjct: 779 GKKQAIISEETAKGLGSDEEGLKDESRVRRTKSKKDSFSRSVSFSGGNILRDVVIRTITS 838
Query: 660 RSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDK 719
+S+ NE+ RN A VA KRGMVLPFTPLAMSFDSV YYVDMP EMK QGVAE++
Sbjct: 839 QSDSNEVDRNS----RGANSVAVKRGMVLPFTPLAMSFDSVDYYVDMPSEMKNQGVAENR 894
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA 779
L+LL VT FRPG+L ALMGVSGAGKTTLMDVLAGRKTGGYIEGD+RISGFPKKQETFA
Sbjct: 895 LQLLRSVTGTFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKKQETFA 954
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
RISGYCEQNDIHSPQVTVKESLIYSAFLRL EVSKE+K+ FV+EVM LVE+E+LKDAIV
Sbjct: 955 RISGYCEQNDIHSPQVTVKESLIYSAFLRLPIEVSKEEKMRFVDEVMHLVEIENLKDAIV 1014
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
GLPGVTGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV
Sbjct: 1015 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1074
Query: 900 VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPA 959
VCTIHQPSIDIFEAFDELLL+KRGGQVIY GPLGRNSHK+IEY+EAIPGVPKIKEKYNPA
Sbjct: 1075 VCTIHQPSIDIFEAFDELLLMKRGGQVIYLGPLGRNSHKIIEYFEAIPGVPKIKEKYNPA 1134
Query: 960 TWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTW 1019
TWMLEVSS AAE++LG+DFA+ YKSSSL +RNKALV ELSTPP GA DLYFA++YSQSTW
Sbjct: 1135 TWMLEVSSIAAEIQLGIDFAEYYKSSSLFERNKALVKELSTPPPGASDLYFASEYSQSTW 1194
Query: 1020 GQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMY 1079
GQFKSCLWKQWWTYWRSPDYNLVR FTL AL++GT+FW+VGTKRE DLT+IIGAMY
Sbjct: 1195 GQFKSCLWKQWWTYWRSPDYNLVRFFFTLIAALIVGTIFWRVGTKRESANDLTVIIGAMY 1254
Query: 1080 AAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTL 1139
+++ F+G++NCSTVQP+V +ER+VFYRERAAGMYSALPYA+AQVI E+PYVL QTTYYTL
Sbjct: 1255 SSVFFIGVNNCSTVQPIVTIERSVFYRERAAGMYSALPYALAQVISELPYVLVQTTYYTL 1314
Query: 1140 IVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLF 1199
IVYAMV+FEWTAAKF+WF+F++FFSFLYFTYYGMMT S++PN QVAAIFAAAFYALFNLF
Sbjct: 1315 IVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTASLSPNLQVAAIFAAAFYALFNLF 1374
Query: 1200 SGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDH 1255
SGFFIPRP WW+WYYWICPVAWTVYGLIVSQY D+ED+I PG+ PTIK YIE H
Sbjct: 1375 SGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYRDIEDTIRAPGIEPDPTIKWYIEHH 1434
Query: 1256 FGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
FGY PDFMGPVA VL+AFT+FFA MFAFCI+ LNFQTR
Sbjct: 1435 FGYNPDFMGPVAGVLIAFTIFFACMFAFCIRFLNFQTR 1472
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|394994948|gb|AFN42938.1| pleiotropic drug resistance transporter 5b [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 2125 bits (5506), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1048/1297 (80%), Positives = 1162/1297 (89%), Gaps = 4/1297 (0%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ LKVRGEITYNG+ L EFVPQKTSAYISQNDVHV
Sbjct: 202 MTLLLGPPSSGKTTLLLALAGKLDPTLKVRGEITYNGHGLKEFVPQKTSAYISQNDVHVA 261
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTVKETLDFSARC GVG+RYELL+ELARRE+DAGIFPEAEIDLFMKATAMEGVESSLIT
Sbjct: 262 EMTVKETLDFSARCQGVGSRYELLTELARRERDAGIFPEAEIDLFMKATAMEGVESSLIT 321
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTL+ILGLD+C+DTIVGDEM RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 322 DYTLRILGLDVCRDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 381
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+T+AT+LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE VLEFFE+C
Sbjct: 382 FQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPREHVLEFFETC 441
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTSRKDQEQYWA+R +PY+YISVTEFA RFK FH+G+ +EN+LS
Sbjct: 442 GFKCPERKGTADFLQEVTSRKDQEQYWANRHRPYQYISVTEFAKRFKRFHVGLRIENELS 501
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VP+DK++ H AA++FKKYTVP +ELLK +DKEWLLIKRNSFVYV KTVQ+IIVA I ST
Sbjct: 502 VPYDKTRSHPAALIFKKYTVPTLELLKINFDKEWLLIKRNSFVYVFKTVQIIIVAFIGST 561
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VFLRT+MHT +DGA ++GALLF M+INMFNGF+EL+M IQR PVFYK RDL+FHP W
Sbjct: 562 VFLRTKMHTNTVDDGATYVGALLFGMVINMFNGFSELSMIIQRLPVFYKHRDLLFHPPWA 621
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
FTLPT LL++PIS+FE++VW+V+TYYTIG+APEASRFFK LL FLIQQMAA +FRL AG
Sbjct: 622 FTLPTVLLKVPISVFETIVWMVMTYYTIGYAPEASRFFKQSLLTFLIQQMAAGLFRLTAG 681
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTMIIANTGGAL LL+VFLLGGFI+P+G IP+WW WGYWVSPL+YG+NAF VNEM+AP
Sbjct: 682 VCRTMIIANTGGALMLLLVFLLGGFILPRGSIPDWWRWGYWVSPLSYGFNAFTVNEMFAP 741
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMN+ A D T+LG V+ NFD+ R W+WIGAAAL GF +LFNVLFT LMYL+P
Sbjct: 742 RWMNKFAPDGTTRLGLQVMKNFDVFTERRWFWIGAAALLGFTILFNVLFTLVLMYLSPLN 801
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
KPQA LS+E A++M A+QEES PRL QSK+D PRSLS++D N +REM IRRM S
Sbjct: 802 KPQATLSKEQASDMEADQEESTGSPRLKISQSKRDDLPRSLSAADGNKTREMEIRRMSSH 861
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
+ + L RN+D+NLEAA GVA K+GM+LPFTPLAMSF+ V Y+VDMPPEMK+QGV EDKL
Sbjct: 862 IHSSGLYRNEDANLEAANGVAAKKGMILPFTPLAMSFEDVSYFVDMPPEMKDQGVTEDKL 921
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL EVT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGD+RISGFPK QETFAR
Sbjct: 922 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKNQETFAR 981
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
+SGYCEQ DIHSPQVT+ ESLI+SAFLRL KEVSKEDK+IFV+EVMDLVEL++LKDAIVG
Sbjct: 982 VSGYCEQTDIHSPQVTIHESLIFSAFLRLPKEVSKEDKMIFVDEVMDLVELDNLKDAIVG 1041
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPGVTGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 1042 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1101
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGGQVIY+GPLGR+S K+IEY+EAIPGV KIKEKYNPAT
Sbjct: 1102 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSQKIIEYFEAIPGVQKIKEKYNPAT 1161
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLE SS E RLGMDFA+ Y+SS+L QRNKALV ELS PP GAKDLYF TQ+SQ TWG
Sbjct: 1162 WMLEASSIGTEARLGMDFAEYYRSSALHQRNKALVKELSAPPPGAKDLYFTTQFSQPTWG 1221
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFKSCLWKQWWTYWRSPDYNLVR F+LA AL+IGT+FW VG+KR+ + DL +IGAMYA
Sbjct: 1222 QFKSCLWKQWWTYWRSPDYNLVRFFFSLAAALLIGTIFWNVGSKRKSSGDLMTVIGAMYA 1281
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A+LFVGI+NCSTVQP+VAVERTVFYRERAAGMYSALPYA+AQV EIPY+L QTTYYTLI
Sbjct: 1282 AVLFVGINNCSTVQPIVAVERTVFYRERAAGMYSALPYAMAQVFAEIPYILVQTTYYTLI 1341
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
VYAMV FEWTAAKF+WF+FVTFFSFLY+TYYGMMTVSITPNHQVAAIFAAAFYALFNLFS
Sbjct: 1342 VYAMVGFEWTAAKFFWFYFVTFFSFLYWTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1401
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GFFIPRP WWIWYYWICPVAWTVYG IVSQYGDVED+I VPG+ P IK YI+DHF
Sbjct: 1402 GFFIPRPRIPKWWIWYYWICPVAWTVYGSIVSQYGDVEDTIQVPGVFPNPRIKDYIKDHF 1461
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
GY PDFM PVA VLV F FFAFM+A+ IKTLNFQTR
Sbjct: 1462 GYNPDFMAPVAVVLVGFAAFFAFMYAYAIKTLNFQTR 1498
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549838|ref|XP_002515970.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223544875|gb|EEF46390.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2123 bits (5500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1020/1297 (78%), Positives = 1161/1297 (89%), Gaps = 5/1297 (0%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ LKV G ITYNGY+LNEFVP+KTSAYISQNDVHVG
Sbjct: 202 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGNITYNGYKLNEFVPRKTSAYISQNDVHVG 261
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
MTVKETLDFSARC G+G RY+LLSELARREKDAGIFPE E+DLFMKATAMEG ES+L T
Sbjct: 262 VMTVKETLDFSARCQGIGYRYDLLSELARREKDAGIFPEKEVDLFMKATAMEGAESNLFT 321
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTLK+LGLDICKDTIVGDEM RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 322 DYTLKLLGLDICKDTIVGDEMLRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 381
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
YQIVKCL QIVH+T+AT+LMSLLQP PETFDLFDD+IL+SEG+IVYQGPRE +LEFFESC
Sbjct: 382 YQIVKCLHQIVHLTEATVLMSLLQPPPETFDLFDDVILVSEGRIVYQGPRECILEFFESC 441
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTS+KDQEQYWADR+KPYRYISV EFA +FKSFH+G+ L N+L
Sbjct: 442 GFHCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVPEFAEKFKSFHVGVQLHNELL 501
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VPFDKS+GH AA+ F K++VP M+LLKACWDKEWLLIK+NS V+VSKT+++++VA I ST
Sbjct: 502 VPFDKSRGHPAALAFSKFSVPTMDLLKACWDKEWLLIKKNSVVFVSKTIKIVVVAAITST 561
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VF++ RMHTRNE DG LF+GALLF+M+ NMFNGFAELA+ I R PVFYKQRDL+FHP WT
Sbjct: 562 VFIKPRMHTRNEEDGTLFVGALLFAMVTNMFNGFAELALMITRLPVFYKQRDLLFHPPWT 621
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
FTLPTFLL +P+SI ES+VWV ++YY+IGFAPEASRFFK+ LLVFL QQMA+ +FRLIAG
Sbjct: 622 FTLPTFLLTLPMSIIESIVWVCISYYSIGFAPEASRFFKHMLLVFLTQQMASGIFRLIAG 681
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTMIIANTGGAL LL++FLLGGFI+PK QIPN WEW YW+SP++YGYNA VNEMYAP
Sbjct: 682 VCRTMIIANTGGALVLLLIFLLGGFILPKEQIPNGWEWAYWISPMSYGYNALTVNEMYAP 741
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMNRLASDN TKLG AVL + + + +WYWIGA AL GF +LFNVLFTF LMYL+PP
Sbjct: 742 RWMNRLASDNTTKLGIAVLEDLGVFQNENWYWIGAGALLGFAILFNVLFTFALMYLSPPE 801
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
K QA++SEE A EM E E+SK EPRL +S+K+S P+SL+S+D NN+RE+ I+RM S
Sbjct: 802 KKQAIISEETAVEMEGE-EDSKGEPRLRVSKSQKESLPQSLTSADGNNTRELEIQRMSSP 860
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
NP+ L+ N DS++EAA G PK+GM LPFTPLAMSF++V Y+VDMP EMK+QGV +D+L
Sbjct: 861 QNPSGLTINADSSIEAANGAPPKKGMALPFTPLAMSFENVKYFVDMPDEMKQQGVGDDRL 920
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL +VT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG+PK Q+TFAR
Sbjct: 921 QLLRDVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGYPKNQDTFAR 980
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
ISGYCEQ D+HSPQVTV+ESLIYSAFLRL EVSKE+K+ FV++V++LVEL++LKDAIVG
Sbjct: 981 ISGYCEQGDLHSPQVTVRESLIYSAFLRLPAEVSKEEKMSFVDQVLELVELDNLKDAIVG 1040
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPGVTGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVV
Sbjct: 1041 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 1100
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGGQVIY GPLGRNS K+++Y+EAIPGVPKI EK NP+T
Sbjct: 1101 CTIHQPSIDIFEAFDELLLMKRGGQVIYLGPLGRNSQKIVQYFEAIPGVPKITEKDNPST 1160
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLEVSS AAEVRLGMDFA+ YKSSSLCQRNK LV EL+ PP GAKDLYFATQYSQS+WG
Sbjct: 1161 WMLEVSSVAAEVRLGMDFAEYYKSSSLCQRNKDLVEELALPPPGAKDLYFATQYSQSSWG 1220
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFK+CLWKQWW+YWRSPDYNLVR FTL ALM+GTVFWKVGTK++ + L IIGAMY+
Sbjct: 1221 QFKNCLWKQWWSYWRSPDYNLVRNFFTLVAALMVGTVFWKVGTKKDSASALNTIIGAMYS 1280
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A++F+GI+NCSTVQP++A+ERTVFYRERAAGMYS LPYA+AQV+ EIPYVLFQT YYTLI
Sbjct: 1281 AVIFIGINNCSTVQPIIAIERTVFYRERAAGMYSELPYALAQVVCEIPYVLFQTVYYTLI 1340
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
VYAMV+FEWTAAKF+WFFF++FFSFLYFTYYGMMTVS+TP+ QVA+IFAA FY LFNLFS
Sbjct: 1341 VYAMVAFEWTAAKFFWFFFISFFSFLYFTYYGMMTVSVTPDLQVASIFAATFYGLFNLFS 1400
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GFFIPRP WW+WYYWICPVAWTVYGLIVSQY D E I VPG++ I+ YI++H+
Sbjct: 1401 GFFIPRPRIPKWWVWYYWICPVAWTVYGLIVSQYHDDEARIKVPGVSTDIRIRDYIQEHY 1460
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
GYEP+FMGPVAAVLVAFTVFFAF++A+ IKTLNFQTR
Sbjct: 1461 GYEPNFMGPVAAVLVAFTVFFAFIYAYAIKTLNFQTR 1497
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|394994943|gb|AFN42936.1| pleiotropic drug resistance transporter 5 [Nicotiana plumbaginifolia] | Back alignment and taxonomy information |
|---|
Score = 2111 bits (5469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1043/1297 (80%), Positives = 1161/1297 (89%), Gaps = 4/1297 (0%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ LKVRGEITYNG+ L EFVPQKTSAYISQNDVHV
Sbjct: 202 MTLLLGPPSSGKTTLLLALAGKLDPTLKVRGEITYNGHGLKEFVPQKTSAYISQNDVHVA 261
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTVKETLDFSARC GVG+RYELL+ELARRE+DAGIFPEAEIDLFMKATAMEGVESSLIT
Sbjct: 262 EMTVKETLDFSARCQGVGSRYELLTELARRERDAGIFPEAEIDLFMKATAMEGVESSLIT 321
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTL+ILGLD+C+DTIVGDEM RGISGGQKKRVTTGEMIVGPTKTLF DEISTGLDSSTT
Sbjct: 322 DYTLRILGLDVCRDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFTDEISTGLDSSTT 381
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+T+AT+LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE VLEFFE+C
Sbjct: 382 FQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPREHVLEFFETC 441
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTSRKDQEQYWA+R +PY+YISVTEFA RFK FH+G+ +EN+LS
Sbjct: 442 GFRCPERKGTADFLQEVTSRKDQEQYWANRHRPYQYISVTEFAKRFKRFHVGLRIENELS 501
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VP+DK++ H AA++FKKYTVP +ELLK +DKEWLLIKRNSFVYV KTVQ+IIVA+I ST
Sbjct: 502 VPYDKTRSHPAALIFKKYTVPILELLKTNFDKEWLLIKRNSFVYVFKTVQIIIVALIGST 561
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VFLRT+MHT +DGA+++GALLF M+INMFNGF+ELAM IQR PVFYK RDL+FHP WT
Sbjct: 562 VFLRTKMHTNTVDDGAIYVGALLFGMVINMFNGFSELAMIIQRLPVFYKHRDLLFHPPWT 621
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
FTLPT LL++PIS+FE++VW+V+TYYTIG+APEASRFFK LL FLIQQMAA +FRL AG
Sbjct: 622 FTLPTVLLKVPISVFETIVWMVMTYYTIGYAPEASRFFKQSLLTFLIQQMAAGLFRLTAG 681
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTMIIANTGGAL LL++FLL GFI+P+G IP+WW WGYWVSPL+YG+NAF VNEM+AP
Sbjct: 682 VCRTMIIANTGGALMLLLIFLLCGFILPRGSIPDWWRWGYWVSPLSYGFNAFTVNEMFAP 741
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMN+ D T+LG V+ NFD+ R W+WIGAAAL GF +LFNVLFT L+YL+P
Sbjct: 742 RWMNKFGPDGTTRLGLQVMKNFDVFTERRWFWIGAAALLGFTILFNVLFTLVLVYLSPLN 801
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
KPQA LS+E A++M A+QEES PRL QSK+D PRSLS++D N +REM IRRM SR
Sbjct: 802 KPQATLSKEQASDMEADQEESTGSPRLRISQSKRDDLPRSLSAADGNKTREMEIRRMSSR 861
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
++ + RN+D+NLEAA GVA K+GM+LPFTPLAMSFD V Y+VDMPPEMK+QGV EDKL
Sbjct: 862 TSSSGFYRNEDANLEAANGVAAKKGMILPFTPLAMSFDDVSYFVDMPPEMKDQGVTEDKL 921
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL EVT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGD+RISGFPK QETFAR
Sbjct: 922 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKNQETFAR 981
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
+SGYCEQ DIHSPQVT+ ESLI+SAFLRL KEVSKEDK+IFV+EVMDLVEL++LKDAIVG
Sbjct: 982 VSGYCEQTDIHSPQVTIHESLIFSAFLRLPKEVSKEDKMIFVDEVMDLVELDNLKDAIVG 1041
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPGVTGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 1042 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1101
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGGQVIY+GPLGR+S K+IEY+EAIPGV KIKEKYNPAT
Sbjct: 1102 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSQKIIEYFEAIPGVQKIKEKYNPAT 1161
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLE SS E RLGMDFA+ Y+SS+L QRNKALV ELS PP GAKDLYF TQ+SQ WG
Sbjct: 1162 WMLEASSIGTEARLGMDFAEYYRSSALHQRNKALVKELSAPPPGAKDLYFTTQFSQPAWG 1221
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFKSCLWKQWWTYWRSPDYNLVR F+LA AL+IGT+FW VG+KR+ + DL +IGAMYA
Sbjct: 1222 QFKSCLWKQWWTYWRSPDYNLVRFFFSLAAALLIGTIFWNVGSKRKSSGDLMTVIGAMYA 1281
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A+LFVGI+NCSTVQP+VAVERTVFYRERAAGMYSALPYA+AQV EIPY+L QTTYYTLI
Sbjct: 1282 AVLFVGINNCSTVQPIVAVERTVFYRERAAGMYSALPYAMAQVFAEIPYILVQTTYYTLI 1341
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
+YAMV FEWTAAKF+WF+FVTFFSFLY+TYYGMMTVSITPNHQVAAIFAAAFYALFNLFS
Sbjct: 1342 IYAMVGFEWTAAKFFWFYFVTFFSFLYWTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1401
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GFFIPRP WWIWYYWICPVAWTVYG IVSQYGDVED+I VPG+ P IK YI+DHF
Sbjct: 1402 GFFIPRPRIPKWWIWYYWICPVAWTVYGSIVSQYGDVEDTIQVPGVFPNPRIKDYIKDHF 1461
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
GY DFM PVA VLV F FFAFM+A+ IKTLNFQTR
Sbjct: 1462 GYSSDFMAPVAVVLVGFAAFFAFMYAYAIKTLNFQTR 1498
|
Source: Nicotiana plumbaginifolia Species: Nicotiana plumbaginifolia Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|394994946|gb|AFN42937.1| pleiotropic drug resistance transporter 5a [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 2108 bits (5461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1046/1297 (80%), Positives = 1163/1297 (89%), Gaps = 4/1297 (0%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ LKVRGEITYNG+ L EFVPQKTSAYISQNDVHV
Sbjct: 202 MTLLLGPPSSGKTTLLLALAGKLDPTLKVRGEITYNGHGLKEFVPQKTSAYISQNDVHVA 261
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTVKETLDFSARC GVG+RYELL+ELARRE+DAGIFPEAEIDLFMKATAMEGVESSLIT
Sbjct: 262 EMTVKETLDFSARCQGVGSRYELLTELARRERDAGIFPEAEIDLFMKATAMEGVESSLIT 321
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTL+ILGLD+C+DTIVGDEM RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 322 DYTLRILGLDVCRDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 381
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+T+AT+LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE VLEFFE+C
Sbjct: 382 FQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPREHVLEFFETC 441
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTSRKDQEQYWA+R +PY+YISVTEFA RFK FH+G+ +EN+LS
Sbjct: 442 GFKCPERKGTADFLQEVTSRKDQEQYWANRHRPYQYISVTEFAKRFKRFHVGLRIENELS 501
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VP+DK++ H AA++FKKYTVP +ELLK +DKEWLLIKRNSFVYV KTVQ+IIVA+I ST
Sbjct: 502 VPYDKTRSHPAALIFKKYTVPTLELLKTNFDKEWLLIKRNSFVYVFKTVQIIIVALIGST 561
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VFLRT+MHT +DGA ++GALLF M+INMFNGF+EL+M IQR PVFYK RDL+FHP W
Sbjct: 562 VFLRTKMHTNTVDDGATYVGALLFGMVINMFNGFSELSMIIQRLPVFYKHRDLLFHPPWA 621
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
FTLPT LL++PIS+FE++VW+V+TYYTIG+APEASRFFK LL FLIQQMAA +FRL AG
Sbjct: 622 FTLPTVLLKVPISVFETIVWMVMTYYTIGYAPEASRFFKQSLLTFLIQQMAAGLFRLTAG 681
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTMIIANTGGAL LL+VFLLGGFI+P+G IP+WW WGYW+SPL+YG+NAF VNEM+AP
Sbjct: 682 VCRTMIIANTGGALMLLLVFLLGGFILPRGSIPDWWRWGYWISPLSYGFNAFTVNEMFAP 741
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMN+ A D T+LG V+ NF + R W+WIGAAAL GF +LFNVLFT LMYL+P
Sbjct: 742 RWMNKFAPDGTTRLGLQVMKNFGVFTERRWFWIGAAALLGFTILFNVLFTLVLMYLSPLN 801
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
KPQA LS+E A++M AEQEES PRL QSK+D PRSLS++D N +REM IRRM SR
Sbjct: 802 KPQATLSKEQASDMEAEQEESTGTPRLRISQSKRDDLPRSLSAADGNKTREMEIRRMSSR 861
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
++ + L RN+D+NLEAA GVA K+GM+LPFTPLAMSF+ V Y+VDMPPEMK+QGV EDKL
Sbjct: 862 TSSSGLYRNEDANLEAANGVAAKKGMILPFTPLAMSFEDVSYFVDMPPEMKDQGVTEDKL 921
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL EVT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGD+RISGFPK QETFAR
Sbjct: 922 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKNQETFAR 981
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
+SGYCEQ DIHSPQVT+ ESLI+SAFLRL KEVSKEDK+IFV+EVMDLVEL++LKDAIVG
Sbjct: 982 VSGYCEQTDIHSPQVTIHESLIFSAFLRLPKEVSKEDKMIFVDEVMDLVELDNLKDAIVG 1041
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPGVTGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 1042 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1101
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGGQVIY+GPLGR+S K+IEY+EAIPGV KIKEKYNPAT
Sbjct: 1102 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSQKIIEYFEAIPGVQKIKEKYNPAT 1161
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLE SS E RLGMDFA+ Y+SS+L QRNKALV ELS PP GAKDLYF TQ+SQ WG
Sbjct: 1162 WMLEASSIGTEARLGMDFAEYYRSSALHQRNKALVKELSAPPPGAKDLYFTTQFSQPAWG 1221
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFKSCLWKQWWTYWRSPDYNLVR F+LA AL+IGT+FW VG+KR+ + DL +IGAMYA
Sbjct: 1222 QFKSCLWKQWWTYWRSPDYNLVRFFFSLAAALLIGTIFWNVGSKRQSSGDLMTVIGAMYA 1281
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A+LFVGI+NCSTVQP+VAVERTVFYRERAAGMYSALPYA+AQV EIPY+L QTTYYTLI
Sbjct: 1282 AVLFVGINNCSTVQPIVAVERTVFYRERAAGMYSALPYAMAQVFAEIPYILVQTTYYTLI 1341
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
VYAMV+FEWTAAKF+WF+FVTFFSFLY+TYYGMMTVSITPNHQVAAIFAAAFYALFNLFS
Sbjct: 1342 VYAMVAFEWTAAKFFWFYFVTFFSFLYWTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1401
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GFFIPRP WWIWYYWICPVAWTVYG IVSQYGDVED+I VPG+ P IK YI+DHF
Sbjct: 1402 GFFIPRPRIPKWWIWYYWICPVAWTVYGSIVSQYGDVEDTIQVPGVFPNPRIKDYIKDHF 1461
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
GY DFM PVA VLV F FFAFM+A+ IKTLNFQTR
Sbjct: 1462 GYNSDFMAPVAVVLVGFAAFFAFMYAYAIKTLNFQTR 1498
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466941|ref|XP_004151184.1| PREDICTED: ABC transporter G family member 36-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2100 bits (5441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1043/1297 (80%), Positives = 1169/1297 (90%), Gaps = 20/1297 (1%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ LKV+GE++YNG++L EFVPQKTSAYISQNDVH+G
Sbjct: 195 MTLLLGPPSSGKTTLLLALAGKLDPSLKVKGEVSYNGHKLKEFVPQKTSAYISQNDVHMG 254
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
MTVKETLDFSARC GVGTRYELLSELARREKDAGI PEAE+DLFMKATAMEGVESSLIT
Sbjct: 255 IMTVKETLDFSARCQGVGTRYELLSELARREKDAGIKPEAEVDLFMKATAMEGVESSLIT 314
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTLKILGLDICKDTIVGDEM RGISGGQ+KRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 315 DYTLKILGLDICKDTIVGDEMIRGISGGQRKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 374
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
YQIVKCLQQIVH+T+ TILMSLLQPAPETFDLFDDIIL+SEGQIVYQGPR+ V+EFFESC
Sbjct: 375 YQIVKCLQQIVHLTEGTILMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDHVVEFFESC 434
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTSRKDQEQYWADR KPYRY+ V+EFA+RFK FH+G+ LEN+LS
Sbjct: 435 GFKCPERKGTADFLQEVTSRKDQEQYWADRRKPYRYVPVSEFASRFKRFHVGLRLENELS 494
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
+ +DKS+GH+AA+VF + VPKMELLKAC+DKEWLL+KRNSFVY+ KTVQ+IIVAIIAST
Sbjct: 495 ISYDKSRGHKAALVFSENVVPKMELLKACFDKEWLLMKRNSFVYIFKTVQIIIVAIIAST 554
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VFLRTRMHTR+++DGA+FIGALLFS+I NMFNGF+ELAMTI R PVFYKQRDL FHP WT
Sbjct: 555 VFLRTRMHTRDQSDGAVFIGALLFSLISNMFNGFSELAMTISRLPVFYKQRDLKFHPPWT 614
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+T+PT +L IP S+ ESVVW+VVTYYTIGFAPEASRFFK LL+FL+QQMAA +FRLIAG
Sbjct: 615 YTIPTVILGIPTSLLESVVWLVVTYYTIGFAPEASRFFKQLLLIFLVQQMAAGVFRLIAG 674
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
+CR+MIIANTGG+L LL++FLLGGFI+P+G+IP WW WGYW+SPL YG+NA AVNEM+AP
Sbjct: 675 ICRSMIIANTGGSLILLLIFLLGGFIIPRGEIPKWWIWGYWISPLTYGFNAIAVNEMFAP 734
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RW N+L + LG VL NFD+ +++WYWIG AA+ GF +LFN+LFT L YLNP
Sbjct: 735 RW-NKLIPNTTVTLGVKVLENFDVFPNKNWYWIGIAAILGFAILFNILFTIALTYLNPLT 793
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
K QA++SEE A+EM A QE+S +EPRL RP SKKDS+PRSLS+SD NN+RE+ ++RM S+
Sbjct: 794 KHQAIMSEETASEMEANQEDS-QEPRLRRPMSKKDSFPRSLSASDGNNTREVNMQRMSSK 852
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
S N GVA K+GM+LPF+PLAMSFD+V YYVDMPPEMKEQGV ED+L
Sbjct: 853 SEAN--------------GVAAKKGMILPFSPLAMSFDTVNYYVDMPPEMKEQGVTEDRL 898
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL VT AFRPG+L ALMGVSGAGKTTLMDVLAGRKTGGYIEGD+RISGFPKKQETFAR
Sbjct: 899 QLLRGVTGAFRPGILTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKKQETFAR 958
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
ISGYCEQNDIHSPQVT++ESLIYSAFLRL KEVSKE+K++FV+EVMDLVEL++LKDAIVG
Sbjct: 959 ISGYCEQNDIHSPQVTIRESLIYSAFLRLPKEVSKEEKMVFVDEVMDLVELDNLKDAIVG 1018
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPGVTGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVV
Sbjct: 1019 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 1078
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGGQVIY GPLGRNS K+IEY+E+IPGVPKIKEKYNPAT
Sbjct: 1079 CTIHQPSIDIFEAFDELLLMKRGGQVIYFGPLGRNSQKIIEYFESIPGVPKIKEKYNPAT 1138
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLEVSS AAEVRLGMDFA+ YKSSSL +RNK LV +LSTPP GAKDLYF +QYSQSTWG
Sbjct: 1139 WMLEVSSVAAEVRLGMDFAEHYKSSSLSKRNKELVTDLSTPPPGAKDLYFESQYSQSTWG 1198
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
Q K CLWKQWWTYWRSPDYNLVR FTLA ALMIGTVFWKVGTKR+ +TDLTMIIGAMYA
Sbjct: 1199 QLKCCLWKQWWTYWRSPDYNLVRYFFTLAAALMIGTVFWKVGTKRDSSTDLTMIIGAMYA 1258
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A+LFVGI+NC TVQP+V+VERTVFYRERAAGMYSA PYA+AQV+VEIP++L QTTYYTLI
Sbjct: 1259 AVLFVGINNCQTVQPIVSVERTVFYRERAAGMYSAFPYALAQVLVEIPFILVQTTYYTLI 1318
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
VY+MVSF+WTA KF+WF+F+ FFSFLYFTYYGMMTVSITPNH VAAIFAAAFYALFNLFS
Sbjct: 1319 VYSMVSFQWTAPKFFWFYFINFFSFLYFTYYGMMTVSITPNHHVAAIFAAAFYALFNLFS 1378
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GFF+PRP WW+WYYWICP+AWTVYGLI+SQYGDVE ISVPG++ +IK+YIE HF
Sbjct: 1379 GFFVPRPRIPKWWVWYYWICPIAWTVYGLIISQYGDVEKKISVPGLSDPISIKSYIESHF 1438
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
GY+P+FMGPVA VLV F FFAFMFA+CIKTLNFQ R
Sbjct: 1439 GYDPNFMGPVAGVLVGFAAFFAFMFAYCIKTLNFQLR 1475
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449489384|ref|XP_004158295.1| PREDICTED: pleiotropic drug resistance protein 12-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2098 bits (5435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1004/1297 (77%), Positives = 1142/1297 (88%), Gaps = 11/1297 (0%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAG+L+ +LKV+GEITYNG +LNEFVPQKTSAYISQNDVHVG
Sbjct: 195 MTLLLGPPSSGKTTLLLALAGRLDPNLKVKGEITYNGNKLNEFVPQKTSAYISQNDVHVG 254
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTVKETLDFSARC GVGTRY+LL+ELARREK AGI PEAEIDLFMKATA+EGVESSLIT
Sbjct: 255 EMTVKETLDFSARCQGVGTRYDLLNELARREKQAGILPEAEIDLFMKATAIEGVESSLIT 314
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTLKILG+DICKD IVGDEM RGISGGQKKRVTTGE+IV PTKTLFMDEISTGLDSSTT
Sbjct: 315 DYTLKILGIDICKDIIVGDEMRRGISGGQKKRVTTGEIIVSPTKTLFMDEISTGLDSSTT 374
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
YQIVKCLQQIVH+TDAT++MSLLQPAPETFDLFDDIILLS+GQIVY+GPRE VLEFF SC
Sbjct: 375 YQIVKCLQQIVHLTDATVVMSLLQPAPETFDLFDDIILLSDGQIVYEGPREHVLEFFGSC 434
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CP+RKGTADFLQEVTSRKDQ Q+WA+RS+ YRY +V+EFA+RFK FH+G L N+LS
Sbjct: 435 GFQCPDRKGTADFLQEVTSRKDQRQFWANRSEEYRYTTVSEFASRFKQFHVGKKLRNELS 494
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VP+DKS GH+AA+V+ KY++PK+ELLKAC KEWLLIKRNSFV++ K VQLI+V +++T
Sbjct: 495 VPYDKSSGHKAALVYHKYSIPKLELLKACTHKEWLLIKRNSFVHIFKMVQLIVVGFVSAT 554
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VF R +MH RNE DGA++IGAL+F+M++NMFNG+A++A+TI R PVF+KQRDL+FHP WT
Sbjct: 555 VFFRAKMHHRNEEDGAIYIGALIFTMMVNMFNGYADIALTIARLPVFFKQRDLLFHPPWT 614
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
FTLPT LLR+P+S+ ES VW+V+TYYTIGFAPEASRFFK FLLVFLIQQMA+ +FR IAG
Sbjct: 615 FTLPTVLLRLPLSVLESTVWMVMTYYTIGFAPEASRFFKQFLLVFLIQQMASGLFRFIAG 674
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
CRTMIIANTGG+LTLL+VF+LGGF +PKG IP WW WGYW+SP+ Y YNA +VNEM+AP
Sbjct: 675 CCRTMIIANTGGSLTLLIVFMLGGFTLPKGDIPKWWTWGYWISPMTYSYNAISVNEMFAP 734
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWM RLASDN T LG AVL NFDI R+W+WIGA AL G +LFNVLFT LMYLNP G
Sbjct: 735 RWMKRLASDNKTPLGLAVLKNFDIFQDRNWFWIGAGALLGLAILFNVLFTLALMYLNPFG 794
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
+PQA++S E+ E+ EQ+ + PR + +SK DS RSLSSSD NN+REM I RM SR
Sbjct: 795 RPQAIVSRESTEELDFEQDVKELTPR--QAESKTDSMIRSLSSSDGNNTREMTILRMSSR 852
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
S + R DS L + GV KRGMVLPF PLAMSFDSV YYVDMP EMK QGV +++L
Sbjct: 853 STNS--GRCGDSPLRS--GVNTKRGMVLPFNPLAMSFDSVNYYVDMPSEMKNQGVKDNRL 908
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL EVT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGDI+ISGFPK+QETFAR
Sbjct: 909 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGFPKQQETFAR 968
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
ISGYCEQNDIHSPQVTV+ESLIYSAFLRL KEVS +K++FV+EVM+LVEL++L DAIVG
Sbjct: 969 ISGYCEQNDIHSPQVTVQESLIYSAFLRLPKEVSIIEKMVFVDEVMELVELKNLSDAIVG 1028
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
+PG+TGLS EQRKRLTIAVELV+NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 1029 IPGITGLSTEQRKRLTIAVELVSNPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1088
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGGQVIY+GPLGRNSHK+IEY+EAIPGVPKIKEKYNPAT
Sbjct: 1089 CTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRNSHKLIEYFEAIPGVPKIKEKYNPAT 1148
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLEVSS AAEV+L MDFAD Y++SSL QRNK LV ELSTP G++DLYF+TQYSQS WG
Sbjct: 1149 WMLEVSSVAAEVQLKMDFADHYRASSLYQRNKTLVKELSTPTPGSRDLYFSTQYSQSMWG 1208
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFKSCLWKQ WTYWRSPDYNLVR F L ALM+GT+FWKVG+K +D DL IIGAMY+
Sbjct: 1209 QFKSCLWKQSWTYWRSPDYNLVRFLFALTAALMLGTIFWKVGSKMDDVKDLNTIIGAMYS 1268
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
++LF+G++NCSTVQP+VA ER+VFYRERAAGMYS+ PYA+AQVI+EIPYV QT YYTLI
Sbjct: 1269 SVLFIGVNNCSTVQPLVATERSVFYRERAAGMYSSFPYALAQVIIEIPYVFCQTAYYTLI 1328
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
VYAMV F+WTA KF+WFFFV FF+FL FTYYG+MTVSITPNHQVA+IFA AFY LF LFS
Sbjct: 1329 VYAMVDFQWTAEKFFWFFFVNFFTFLCFTYYGLMTVSITPNHQVASIFAGAFYILFCLFS 1388
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GFFIP+P WW+WYYWICPVAWTVYGLIVSQY D+E I VPG A+ T+K+YIE H+
Sbjct: 1389 GFFIPKPKIPKWWLWYYWICPVAWTVYGLIVSQYRDIETLIKVPG-AEDTTVKSYIEHHY 1447
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
GY PDFMGPVAAVLV FTVFFA ++A CIK+LNFQT+
Sbjct: 1448 GYRPDFMGPVAAVLVGFTVFFALVYARCIKSLNFQTK 1484
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1293 | ||||||
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.502 | 0.442 | 0.673 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.468 | 0.420 | 0.702 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.488 | 0.446 | 0.712 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.484 | 0.440 | 0.587 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.478 | 0.425 | 0.573 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.467 | 0.415 | 0.566 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.481 | 0.436 | 0.561 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.471 | 0.429 | 0.571 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.467 | 0.416 | 0.509 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.492 | 0.450 | 0.506 | 0.0 |
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2346 (830.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 450/668 (67%), Positives = 530/668 (79%)
Query: 1 MTLLLGPPXXXXXXXXXXXXXXXNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPP ++ L+V G+ITYNGY+L+EFVP+KTSAYISQND+HVG
Sbjct: 199 MTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVG 258
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
MTVKETLDFSARC GVGTRY+LL+ELARREKDAGIFPEA++DLFMKA+A +GV++SL+T
Sbjct: 259 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVT 318
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTLKILGLDICKDTIVGD+M RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 319 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 378
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+ +AT+LMSLLQPAPETFDLFDDIIL+SEGQIVYQGPR+ +LEFFES
Sbjct: 379 FQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESF 438
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTS+KDQEQYW + ++PY YI V+EFA+R+KSFH+G + N+L+
Sbjct: 439 GFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELA 498
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VPFDKS+GH+AA+VF KY+V K ELLK+CWDKEWLL++RN+F YV KTVQ++I+A I ST
Sbjct: 499 VPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITST 558
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
+FLRT M+TRNE D L+IGALLF MIINMFNGFAE+AM + R PVFYKQRDL+F+P WT
Sbjct: 559 LFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWT 618
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
F+LPTFLL IP SI ES W+VVTYY+IGFAP+ASRFFK FLLVFLIQQMAA++FRLIA
Sbjct: 619 FSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIAS 678
Query: 481 VCRTMIIANXXXXXXXXXXXXXXXXIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTM+IAN ++PKG+IP+WW W YWVSPL Y +N VNEM+AP
Sbjct: 679 VCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAP 738
Query: 541 RWMNRLASDNVT-KLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPP 599
RWMN++AS N T KLG VLN +D+ ++WYWI AL F LFN+LFT L YLNP
Sbjct: 739 RWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPL 798
Query: 600 GKPQAVLSXXXXXXXXXXXXXSKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCS 659
GK +L EE Q K D RSLS++D N E+A+ RM S
Sbjct: 799 GKKAGLLP---------------EEENEDADQGK-DPMRRSLSTADGNRRGEVAMGRM-S 841
Query: 660 RSNPNELS 667
R + E S
Sbjct: 842 RDSAAEAS 849
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2333 (826.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 426/606 (70%), Positives = 505/606 (83%)
Query: 1 MTLLLGPPXXXXXXXXXXXXXXXNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPP ++ L V GE+TYNGYRLNEFVP KTSAYISQND+HVG
Sbjct: 197 MTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVG 256
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
MTVKETLDFSARC GVGTRY+LL+ELARREKDAGIFPEA++DLFMKA+A +GV+SSLIT
Sbjct: 257 IMTVKETLDFSARCQGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLIT 316
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTLKILGLDICKDTIVGD+M RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 317 DYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 376
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVKCLQQIVH+T+AT+L+SLLQPAPETFDLFDDIILLSEGQIVYQGPR+ +LEFFES
Sbjct: 377 FQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESF 436
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTS+KDQEQYW D ++PYRYI V+EFA+ FK FH+G L N+LS
Sbjct: 437 GFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELS 496
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VP+DKS+ H+AA++F KY++ K ELLK+CWDKEW+L+KRNSF YV KTVQ+II+A I ST
Sbjct: 497 VPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITST 556
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
++LRT MHTRNE D +++G+LLF+MI+NMFNG AE+AMTIQR PVFYKQRDL+FHP WT
Sbjct: 557 LYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWT 616
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+TLPTFLL IPISIFES W+VVTYY+IG+AP+A RFFK FL++FLIQQMAA +FR IA
Sbjct: 617 YTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIAS 676
Query: 481 VCRTMIIANXXXXXXXXXXXXXXXXIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
CRTM IAN ++P+ +IP WW W YW+SPL+Y +NA VNE++AP
Sbjct: 677 TCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAP 736
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMN+++ ++ T+LG +VLN +D+ ++WYWIG L GF V+FN FT L YL+P G
Sbjct: 737 RWMNKMSGNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLG 796
Query: 601 KPQAVL 606
K QA+L
Sbjct: 797 KAQAIL 802
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2305 (816.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 455/639 (71%), Positives = 509/639 (79%)
Query: 659 SRSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAED 718
S+ N E N N +K + KRGMVLPFTPL MSFD+V YYVDMP EMKEQGV++D
Sbjct: 781 SKENTEE---NRAENGSKSKSIDVKRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKD 837
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETF 778
KL+LL EVT FRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK+QETF
Sbjct: 838 KLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETF 897
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
ARISGYCEQNDIHSPQVTVKESLIYSAFLRL KEV+K +K+ FV+EVM+LVELESLKDA+
Sbjct: 898 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAV 957
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
VGLPG+TGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT
Sbjct: 958 VGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1017
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNP 958
VVCTIHQPSIDIFEAFDELLLLKRGGQVIY+GPLG+NSHK+IEY++AI GVPKIKEKYNP
Sbjct: 1018 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNP 1077
Query: 959 ATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQST 1018
ATWMLEVSS AAE +L +DFA+ YK+SSL Q+NK LV ELSTPP+GA DLYF+T++SQS
Sbjct: 1078 ATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSL 1137
Query: 1019 WGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAM 1078
GQFKSCLWKQW TYWR+PDYNL R FTLA A+M+G++FWKVGTKRE+ DLT +IGAM
Sbjct: 1138 LGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAM 1197
Query: 1079 YAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYT 1138
YAA+LFVG++N S+VQP++AVER+VFYRERAA MYSALPYA+AQV+ EIPYVL QTTYYT
Sbjct: 1198 YAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYT 1257
Query: 1139 LIVYAMVSXXXXXXXXXXXXXXXXXXXXXXXXXGMMTVSITPNHQVXXXXXXXXXXXXXX 1198
LI+YAM+ GMMTV++TPN QV
Sbjct: 1258 LIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNL 1317
Query: 1199 XSGFFIPRPXXXX----XXXXCPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIED 1254
SGF IPRP CPVAWTVYGLIVSQYGDVED+I VPGMA PTIK YIE+
Sbjct: 1318 FSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIEN 1377
Query: 1255 HFGYEPDFMGPXXXXXXXXXXXXXXXXXXCIKTLNFQTR 1293
H+GY+ DFM P I+TLNFQ R
Sbjct: 1378 HYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1844 (654.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 375/638 (58%), Positives = 442/638 (69%)
Query: 661 SNPNEL-SRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDK 719
S+ EL S + +EA G KRGMVLPF P +++FD+V Y VDMP EM EQG ED+
Sbjct: 792 SDETELQSARSEGVVEA--GANKKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDR 849
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA 779
L LL V AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYI+G+I ISG+PK Q+TFA
Sbjct: 850 LVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFA 909
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
RISGYCEQ DIHSP VTV ESL+YSA+LRL KEV K + IF+EEVM+LVEL L+ A+V
Sbjct: 910 RISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALV 969
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
GLPG +GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV
Sbjct: 970 GLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1029
Query: 900 VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPA 959
VCTIHQPSIDIFEAFDEL LLKRGG+ IY GPLG S +I Y+E+I G+ KI E YNPA
Sbjct: 1030 VCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPA 1089
Query: 960 TWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTW 1019
TWMLEVS+ + E LG+DFA YK+S L +RNK L+ ELS P G+KDLYF TQYSQS
Sbjct: 1090 TWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFL 1149
Query: 1020 GQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMY 1079
Q + LWKQ W+YWR+P Y VR FT+ ALM GT+FW +G K + DL+ +G+MY
Sbjct: 1150 TQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMY 1209
Query: 1080 AAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTL 1139
A+LF+G+ N ++VQPVV VERTVFYRE+AAGMYSA+PYA AQV +EIPYVL Q Y L
Sbjct: 1210 TAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGL 1269
Query: 1140 IVYAMVSXXXXXXXXXXXXXXXXXXXXXXXXXGMMTVSITPNHQVXXXXXXXXXXXXXXX 1199
IVYAM+ GMM V++TPNH +
Sbjct: 1270 IVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLF 1329
Query: 1200 SGFFIPRPXXXX----XXXXCPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDH 1255
SGF IPRP CPVAWT+YGLI SQ+GD+ + ++ M+ +K +I +
Sbjct: 1330 SGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMS----VKQFIREF 1385
Query: 1256 FGYEPDFMGPXXXXXXXXXXXXXXXXXXCIKTLNFQTR 1293
+GY F+G IK+ NFQ R
Sbjct: 1386 YGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1842 (653.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 358/624 (57%), Positives = 448/624 (71%)
Query: 674 LEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPG 733
L ++ PKRGMVLPF PL+++F++V YYVDMP EMK QGV D+L+LL +V AFRPG
Sbjct: 832 LNSSSNKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPG 891
Query: 734 VLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSP 793
+L AL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISG+PK Q TFAR+SGYCEQNDIHSP
Sbjct: 892 ILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSP 951
Query: 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853
VTV ESLIYSA+LRL+ ++ + + +FVEEVM+LVEL+ L+++IVGLPGV GLS EQRK
Sbjct: 952 HVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRK 1011
Query: 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 913
RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+
Sbjct: 1012 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFES 1071
Query: 914 FDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVSSAAAEVR 973
FDELLL+KRGGQVIY+G LG +S K++EY+EA+ GVPKI + YNPATWML+V++ + E +
Sbjct: 1072 FDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQ 1131
Query: 974 LGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWGQFKSCLWKQWWTY 1033
+ +DFA + +SSL +RN+ L+ +LSTPP G+KD+YF T+Y+QS Q K+C WKQ+W+Y
Sbjct: 1132 MSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSY 1191
Query: 1034 WRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTV 1093
WR P YN +R T+ ++ G +FW++GTK E+ DL GAMYAA+LF+G N +TV
Sbjct: 1192 WRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATV 1251
Query: 1094 QPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSXXXXXXX 1153
QP +A+ERTVFYRE+AAGMYSA+PYAI+QV VEI Y QT YTLI+Y+M+
Sbjct: 1252 QPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAK 1311
Query: 1154 XXXXXXXXXXXXXXXXXXGMMTVSITPNHQVXXXXXXXXXXXXXXXSGFFIPRPXXXX-- 1211
GMM +++TPN+Q+ SGF IPRP
Sbjct: 1312 FLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWW 1371
Query: 1212 --XXXXCPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHFGYEPDFMGPXXXX 1269
PVAWT+YGLI SQ GD + + + G+ +K +++ FG+E DF+
Sbjct: 1372 RWYYWATPVAWTLYGLITSQVGDKDSMVHISGIGDID-LKTLLKEGFGFEHDFLPVVAVV 1430
Query: 1270 XXXXXXXXXXXXXXCIKTLNFQTR 1293
IK LNFQ R
Sbjct: 1431 HIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1816 (644.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 343/606 (56%), Positives = 428/606 (70%)
Query: 1 MTLLLGPPXXXXXXXXXXXXXXXNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPP + L++ G ITY G+ EFVPQKT AYISQ+D+H G
Sbjct: 201 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 260
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTV+E+LDFS RCLGVGTRY+LL+EL+RRE++AGI P+ EID FMK+ A+ G E+SL+T
Sbjct: 261 EMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVT 320
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DY LK+LGLDIC DT+VGD M RGISGGQ+KR+TTGEM+VGP LFMDEISTGLDSSTT
Sbjct: 321 DYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTT 380
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QI K ++Q+VH+ D T+++SLLQPAPETF+LFDDIILLSEGQIVYQG R+ VLEFFE
Sbjct: 381 FQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYM 440
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKG ADFLQEVTS+KDQEQYW R PY Y+SV +F++ F SFH G L ++
Sbjct: 441 GFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFR 500
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VP+DK++ H AA+V +KY + +L KAC+D+EWLL+KRNSFVYV KTVQ+ I+++IA T
Sbjct: 501 VPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMT 560
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
V+ RT MH DG F GAL FS+I MFNG AELA T+ R PVF+KQRD +F+P W
Sbjct: 561 VYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWA 620
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
F LP FLL+IP+S+ ESV+W+ +TYYTIGFAP A+RFF+ L F + QMA ++FR +
Sbjct: 621 FALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGA 680
Query: 481 VCRTMIIANXXXXXXXXXXXXXXXXIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
+ RT +IAN I+ K IP+W W Y+ SP+ YG A +NE
Sbjct: 681 LGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDE 740
Query: 541 RW--MNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNP 598
RW N N +G +L + W+WI AL GF VLFN + LMYLNP
Sbjct: 741 RWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNP 800
Query: 599 PGKPQA 604
G +A
Sbjct: 801 LGNSKA 806
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1782 (632.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 354/631 (56%), Positives = 441/631 (69%)
Query: 669 NDDSNL--EAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEV 726
N+++ L +A + ++ K+GM+LPF PL M+F +V YYVDMP EM+ QGV E +L+LL+ V
Sbjct: 798 NEETALVADANQVISEKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNV 857
Query: 727 TSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCE 786
+ F PGVL AL+G SGAGKTTLMDVLAGRKTGGY EGDIRISG PK+Q+TFARISGY E
Sbjct: 858 SGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVE 917
Query: 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTG 846
QNDIHSPQVTV+ESL +SA LRL KE++KE K FVE+VM LVEL++L+ A+VGLPG TG
Sbjct: 918 QNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTG 977
Query: 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 906
LS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP
Sbjct: 978 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1037
Query: 907 SIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVS 966
SIDIFEAFDELLL+KRGGQVIY G LG +S +++Y++ I GVP I YNPATWMLEV+
Sbjct: 1038 SIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVT 1097
Query: 967 SAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWGQFKSCL 1026
+ A E + M+FAD YK S + +A + +LS PP G++ + F ++YSQ+ QF CL
Sbjct: 1098 TPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCL 1157
Query: 1027 WKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVG 1086
WKQ YWRSP+YNLVR FT A ++GTVFW +G+KR + DL ++GA+Y+A LF+G
Sbjct: 1158 WKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLG 1217
Query: 1087 ISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVS 1146
+SN S+VQP+V++ERTVFYRE+AAGMY+ +PYA AQ +VEIPY+L QT Y +I Y +
Sbjct: 1218 VSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIG 1277
Query: 1147 XXXXXXXXXXXXXXXXXXXXXXXXXGMMTVSITPNHQVXXXXXXXXXXXXXXXSGFFIPR 1206
GMM V +TPN + SGF + +
Sbjct: 1278 FERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQK 1337
Query: 1207 PXXXX----XXXXCPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHFGYEPDF 1262
P CPVAWT+ G+I+SQ GDVE I+ P T+K +IE +FGY+P+
Sbjct: 1338 PLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPLF--HGTVKEFIEYYFGYKPNM 1395
Query: 1263 MGPXXXXXXXXXXXXXXXXXXCIKTLNFQTR 1293
+G +K LNFQ R
Sbjct: 1396 IGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1773 (629.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 351/614 (57%), Positives = 435/614 (70%)
Query: 684 RGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSG 743
RGMVLPF PL++SF ++ YYVD+P +KEQG+ ED+L+LL +T AFRPGVL AL+GVSG
Sbjct: 807 RGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSG 866
Query: 744 AGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIY 803
AGKTTLMDVLAGRKTGG IEGD+ ISGFPK+QETFARISGYCEQND+HSP +TV ESL++
Sbjct: 867 AGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLF 926
Query: 804 SAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVA 863
SA LRL ++ E + FV EVM+LVEL SL A+VGLPGV GLS EQRKRLTIAVELVA
Sbjct: 927 SACLRLPADIDSETQRAFVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVA 986
Query: 864 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
NPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDELL +KRG
Sbjct: 987 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1046
Query: 924 GQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVSSAAAEVRLGMDFADAYK 983
G++IY+GPLG+ S ++I+Y+E+I GV KIK +NPA WML+V+++ E RLG+DFA+ Y+
Sbjct: 1047 GELIYAGPLGQKSCELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYR 1106
Query: 984 SSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVR 1043
+S+LCQRNK L+ LS P AK++ F T+YSQS + QF +CLWKQ +YWR+P Y VR
Sbjct: 1107 NSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVR 1166
Query: 1044 CCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQPVVAVERTV 1103
+T+ +LM+GT+ WK G+KR+ L +G+MYAA+LF+GI+N + QPVV++ER V
Sbjct: 1167 FFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFV 1226
Query: 1104 FYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSXXXXXXXXXXXXXXXXX 1163
YRERAAGMYSALP+A AQV +E PYVL Q+T Y+ I YAM +
Sbjct: 1227 SYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYF 1286
Query: 1164 XXXXXXXXGMMTVSITPNHQVXXXXXXXXXXXXXXXSGFFIPR---PXXXXXXXXC-PVA 1219
GMMT +ITPNH V SGF IP P PVA
Sbjct: 1287 SIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVA 1346
Query: 1220 WTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHFGYEPDFMGPXXXXXXXXXXXXXX 1279
WT+YGL+VSQYGD E S+ + + +K +ED GY+ DF+G
Sbjct: 1347 WTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSL 1406
Query: 1280 XXXXCIKTLNFQTR 1293
IK NFQ R
Sbjct: 1407 VFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1676 (595.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 309/607 (50%), Positives = 423/607 (69%)
Query: 1 MTLLLGPPXXXXXXXXXXXXXXXNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+TLLLGPP +LK GEI+YNG+RL+EFVPQKTSAYISQ D+H+
Sbjct: 202 LTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIA 261
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
EMTV+ET+DFSARC GVG+R +++ E+++REK+ GI P+ E+D +MKA ++EG++ SL T
Sbjct: 262 EMTVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQT 321
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DY LKILGLDIC + ++GD M RGISGGQKKR+TT EMIVGPTK LFMDEI+ GLDSST
Sbjct: 322 DYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTA 381
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
+QIVK LQQ H++ AT+L+SLLQPAPE++DLFDDI+L+++G+IVY GPR VL FFE C
Sbjct: 382 FQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDC 441
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKG ADFLQEV S+KDQ QYW PY ++SV + +FK IG +E+ LS
Sbjct: 442 GFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLS 501
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
P+D+S+ H+ A+ F Y++P EL AC +E+LL+KRN FVY+ KT QL++ A I T
Sbjct: 502 KPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMT 561
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VF+RTRM + G ++ AL F++II + +GF EL+MT QR VFYKQ+ L F+P W
Sbjct: 562 VFIRTRMGI-DIIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWA 620
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
+ +P +L++P+S FES+VW ++YY IG+ PEASRFFK F+L+F + + +MFR +A
Sbjct: 621 YAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAA 680
Query: 481 VCRTMIIANXXXXXXXXXXXXXXXXIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
+ +T++ + ++P +P W +WG+W +PL+YG +VNE AP
Sbjct: 681 IFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAP 740
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RW N++ +N T LG +L + + YW+ AL GF VLFN++FT L +L P
Sbjct: 741 RW-NQMQPNNFT-LGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPT 798
Query: 601 KPQAVLS 607
+A++S
Sbjct: 799 SSRAMIS 805
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1647 (584.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 329/650 (50%), Positives = 424/650 (65%)
Query: 655 RRMCSRSNPNELSRNDDSNLEAAKGV--APKRG-----MVLPFTPLAMSFDSVYYYVDMP 707
R M S+ +EL DS+++ K + + K M+LPF PL ++F + YYVD+P
Sbjct: 766 RPMISQDKLSELQGTKDSSVKKNKPLDSSIKTNEDPGKMILPFKPLTITFQDLNYYVDVP 825
Query: 708 PEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR 767
EMK QG E KL+LL+E+T AFRPGVL ALMG+SGAGKTTL+DVLAGRKT GYIEG+IR
Sbjct: 826 VEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIR 885
Query: 768 ISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD 827
ISGF K QETFAR+SGYCEQ DIHSP +TV+ESLIYSA+LRL E++ + KI FV++V++
Sbjct: 886 ISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLE 945
Query: 828 LVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
+ELE +KDA+VG+ GV+GLS EQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR
Sbjct: 946 TIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMR 1005
Query: 888 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIP 947
V+N +TGRT+VCTIHQPSI IFEAFDEL+LLKRGG++IYSGPLG++S VIEY++ IP
Sbjct: 1006 AVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIP 1065
Query: 948 GVPKIKEKYNPATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKD 1007
GV KI++KYNPATWMLEV+S + E L MDFA Y S L + N LV ELS P G+ D
Sbjct: 1066 GVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSD 1125
Query: 1008 LYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKRED 1067
L+F ++Q+ W QFKSCLWK +YWRSP YNL+R T + + G +FW G K +
Sbjct: 1126 LHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDT 1185
Query: 1068 TTDLTMIIGAMYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEI 1127
+L ++GA+Y +LFVGI+NC++ ER V YRER AGMYSA YA+AQV+ EI
Sbjct: 1186 QQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEI 1245
Query: 1128 PYVLFQTTYYTLIVYAMVSXXXXXXXXXXXXXXXXXXXXXXXXXGMMTVSITPNHQVXXX 1187
PY+ Q+ + +++Y M+ M +SITPN V
Sbjct: 1246 PYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAI 1305
Query: 1188 XXXXXXXXXXXXSGFFIPRPXXXX----XXXXCPVAWTVYGLIVSQYGDVEDSISVPGMA 1243
+GF IP+P P +WT+ SQYGD+ I+ G
Sbjct: 1306 LQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFG-- 1363
Query: 1244 QKPTIKAYIEDHFGYEPDFMGPXXXXXXXXXXXXXXXXXXCIKTLNFQTR 1293
+ T+ +++ED+FG+ D + + LNFQ R
Sbjct: 1364 ETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7PC86 | AB35G_ARATH | No assigned EC number | 0.7378 | 0.9605 | 0.8613 | no | no |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5905 | 0.9729 | 0.8610 | N/A | no |
| Q5Z9S8 | PDR12_ORYSJ | No assigned EC number | 0.7362 | 0.9868 | 0.8506 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6198 | 0.9682 | 0.8688 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6013 | 0.9605 | 0.8661 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.5983 | 0.9590 | 0.8635 | N/A | no |
| Q9XIE2 | AB36G_ARATH | No assigned EC number | 0.7503 | 0.9791 | 0.8618 | yes | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.5966 | 0.9744 | 0.8647 | N/A | no |
| Q7FMW4 | PDR15_ORYSJ | No assigned EC number | 0.6887 | 0.9907 | 0.8489 | yes | no |
| Q94A18 | AB29G_ARATH | No assigned EC number | 0.7424 | 0.9574 | 0.8742 | no | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5458 | 0.9621 | 0.8597 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PDR8 | ABC transporter family, pleiotropic drug resistance protein (1436 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1293 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 7e-98 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-95 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-73 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-64 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-56 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-55 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-54 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-51 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-43 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-43 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-42 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-39 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-38 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-35 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 9e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-31 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-23 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-22 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 3e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-22 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-21 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-20 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-20 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-20 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-19 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 3e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-18 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-18 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-17 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-16 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-16 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-16 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 9e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-15 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-15 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-15 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-14 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-14 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-14 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-14 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-13 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-12 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-12 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-12 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-12 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 8e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-11 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 5e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-11 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-11 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-10 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-10 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-10 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-10 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 7e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-10 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-10 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-09 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-09 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-09 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-09 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-08 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-08 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-08 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-08 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-08 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 9e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 9e-08 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-07 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-07 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-07 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 7e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 8e-07 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 8e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 9e-07 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-06 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-06 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-06 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-06 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-06 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-06 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-06 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-06 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-06 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 6e-06 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-06 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-06 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 8e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-06 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-05 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-05 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-05 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-05 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 4e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-05 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-05 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 7e-05 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-05 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-04 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-04 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-04 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-04 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-04 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-04 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-04 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-04 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-04 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-04 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-04 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 4e-04 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-04 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-04 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-04 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 5e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-04 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-04 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-04 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 6e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 6e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-04 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-04 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-04 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 0.001 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 0.001 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 0.001 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 0.001 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 0.001 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.001 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.001 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.001 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.002 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 0.002 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.002 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.002 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.002 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.002 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 0.003 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 0.003 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 0.003 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 0.003 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.003 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.003 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.003 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 0.003 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.003 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.003 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.003 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.004 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.004 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.004 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.004 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.004 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2639 bits (6842), Expect = 0.0
Identities = 1100/1297 (84%), Positives = 1187/1297 (91%), Gaps = 23/1297 (1%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
MTLLLGPPSSGKTTLLLALAGKL+ LKV GEITYNGYRLNEFVP+KTSAYISQNDVHVG
Sbjct: 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG 252
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
MTVKETLDFSARC GVGTRY+LLSELARREKDAGIFPEAE+DLFMKATAMEGV+SSLIT
Sbjct: 253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLIT 312
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
DYTLKILGLDICKDTIVGDEM RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT
Sbjct: 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
YQIVKCLQQIVH+T+AT+LMSLLQPAPETFDLFDDIILLSEGQIVYQGPR+ +LEFFESC
Sbjct: 373 YQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432
Query: 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
GF CPERKGTADFLQEVTS+KDQEQYWADR+KPYRYISV+EFA RFKSFH+GM LEN+LS
Sbjct: 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELS 492
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
VPFDKSQ H+AA+VF KY+VPKMELLKACWDKEWLL+KRN+FVYV KTVQ+IIVA IAST
Sbjct: 493 VPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIAST 552
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT 420
VFLRT MHTRNE DGAL+IGALLFSMIINMFNGFAELA+ IQR PVFYKQRDL+FHP WT
Sbjct: 553 VFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWT 612
Query: 421 FTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480
FTLPTFLL IPISI ESVVWVV+TYY+IGFAPEASRFFK LLVFLIQQMAA +FRLIA
Sbjct: 613 FTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672
Query: 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAP 540
VCRTMIIANTGGAL LL+VFLLGGFI+PKG+IPNWWEW YWVSPL+YG+NA AVNEM+AP
Sbjct: 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP 732
Query: 541 RWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPG 600
RWMN++ASDN T+LG AVLN FD+ ++WYWIG AL GF +LFNVLFT L YLNP G
Sbjct: 733 RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLG 792
Query: 601 KPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR 660
K QA++SEE A EM E+ DS PRSLSS+D NN+RE+A +
Sbjct: 793 KKQAIISEETAEEMEGEE----------------DSIPRSLSSADGNNTREVA---IQRM 833
Query: 661 SNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720
SNP LS+N DS+LEAA GVAPKRGMVLPFTPLAMSFD V Y+VDMP EMKEQGV ED+L
Sbjct: 834 SNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRL 893
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
+LL EVT AFRPGVL ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR
Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 953
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
ISGYCEQNDIHSPQVTV+ESLIYSAFLRL KEVSKE+K++FV+EVM+LVEL++LKDAIVG
Sbjct: 954 ISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG 1013
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LPGVTGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 1014 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1073
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960
CTIHQPSIDIFEAFDELLL+KRGGQVIYSGPLGRNSHK+IEY+EAIPGVPKIKEKYNPAT
Sbjct: 1074 CTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133
Query: 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWG 1020
WMLEVSS AAEV+LG+DFA+ YKSSSL QRNKALV ELSTPP GA DLYFATQYSQSTWG
Sbjct: 1134 WMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWG 1193
Query: 1021 QFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080
QFKSCLWKQWWTYWRSPDYNLVR FTLA ALM+GT+FWKVGTKR + DLTM+IGAMYA
Sbjct: 1194 QFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYA 1253
Query: 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLI 1140
A+LFVGI+NCSTVQP+VAVERTVFYRERAAGMYSALPYAIAQV+ EIPYVL QTTYYTLI
Sbjct: 1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313
Query: 1141 VYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200
VYAMV+FEWTAAKF+WF+F++FFSFLYFTYYGMMTVS+TPN QVAAIFAAAFY LFNLFS
Sbjct: 1314 VYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFS 1373
Query: 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHF 1256
GFFIPRP WW+WYYWICPVAWTVYGLIVSQYGDVED+I VPG A PTIK YI+DH+
Sbjct: 1374 GFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHY 1433
Query: 1257 GYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293
GY+PDFMGPVAAVLV FTVFFAF+FAFCI+TLNFQTR
Sbjct: 1434 GYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1359 bits (3520), Expect = 0.0
Identities = 420/1387 (30%), Positives = 634/1387 (45%), Gaps = 184/1387 (13%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNR-DLKVRGEITYNGYRLNEFVPQKT--SAYISQNDV 57
+T++LG P SG +TLL +A + + V G ITY+G E Y ++ DV
Sbjct: 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
H +TV ETLDF+ARC R + +S +
Sbjct: 149 HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKH------------------------- 183
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
I D + GL ++T VG++ RG+SGG++KRV+ E +G K D + GLDS
Sbjct: 184 -IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFF 237
+T + ++ L+ ++ D T L+++ Q + + ++LFD +I+L EG +Y GP ++ ++F
Sbjct: 243 ATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302
Query: 238 ESCGFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLEN 297
E GF CP+R+ TADFL +TS + Q K + EF +++ L
Sbjct: 303 EKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGYEKKV-PRTPQEFETYWRNSPEYAQLMK 360
Query: 298 QLSVPFDK----------SQGH-----RAAIVFKKYTVPKMELLKACWDKEWLLIKRNSF 342
++ D+ + H + YTV +K C + +L +K N
Sbjct: 361 EIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPS 420
Query: 343 VYVSKTVQLIIVAIIASTVFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQ 402
+ II+A+I S+VF N +D GAL F+++ N F+ E+A +
Sbjct: 421 FTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEIASMYE 477
Query: 403 RFPVFYKQRDLMFHPVWTFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFL 462
P+ K R + + + + IP I ESVV+ ++ Y+ + F A RFF L
Sbjct: 478 ARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLL 537
Query: 463 LVFLIQQMAAAMFRLIAGVCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWV 522
++F+ + +FR I V +T+ A T A+ LL + + GF +P+ + W +W Y+V
Sbjct: 538 ILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYV 597
Query: 523 SPLAYGYNAFAVNEMYAPRWMNRL---ASDNVTKLGAA---------------VLNNFDI 564
+PLAY + + VNE + R+ + LG V + +
Sbjct: 598 NPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYL 657
Query: 565 PAHRD----WYWIGAAALSGFIVLFNVLFTFTLMYLNPPGKPQAVLSEEAAAEMVAEQEE 620
W + GF V F ++ + + +L + A++
Sbjct: 658 KLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKAG 717
Query: 621 SKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSRSNPNELSRNDDSNLEAAKGV 680
SN N++
Sbjct: 718 ETSA------------------------------------SNKNDI-------------- 727
Query: 681 APKRGMVLPFTPLAMSFDSVYYYVDMPPEMK-----------EQGVAEDKLRLLNEVTSA 729
+ G VL T L D V DM E E + ++K +LN V
Sbjct: 728 --EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGW 785
Query: 730 FRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQND 789
+PG L ALMG SGAGKTTL++VLA R T G I G R+ +F R GY +Q D
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQD 845
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849
+H P TV+ESL +SA+LR K VSK +K+ +VEEV+ L+E+ES DA+VG+PG GL++
Sbjct: 846 LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNV 904
Query: 850 EQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 908
EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS
Sbjct: 905 EQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964
Query: 909 DIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVSSA 968
+FE FD LLLL++GGQ +Y G LG NSH +I Y+E G PK E NPA WMLEV A
Sbjct: 965 ILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGA 1023
Query: 969 AAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFAT---QYSQSTWGQFKSC 1025
A D+ + +++SS Q K ++ L A+D +Y+ S W QFK
Sbjct: 1024 APGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLV 1083
Query: 1026 LWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFV 1085
LW+ + YWR+PDY + T+ AL IG F+KVGT L + A++ A +
Sbjct: 1084 LWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLF 1140
Query: 1086 GISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMV 1145
+ P VA RER + +S L + AQ+ VEIPY L T + I Y V
Sbjct: 1141 NPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPV 1200
Query: 1146 SFEWTAAK-------FWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNL 1198
F W A+K F+ ++ FLYF+ G M +S PN AA+ A+ + +
Sbjct: 1201 GFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLS 1260
Query: 1199 FSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVP---------GMAQK 1245
F G P +WI+ Y P + V L+ + DV + V G
Sbjct: 1261 FCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCG 1320
Query: 1246 PTIKAYIED-----------------HFGYEPDFMGPVAAVLV----AFTVFFAFMFAFC 1284
+K Y+E+ + Y DF+ P+++ F +F AF+F
Sbjct: 1321 EYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFNI 1380
Query: 1285 IKTLNFQ 1291
I T+ F
Sbjct: 1381 IATVFFY 1387
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = 7e-98
Identities = 108/239 (45%), Positives = 143/239 (59%), Gaps = 47/239 (19%)
Query: 692 PLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMD 751
+++ ++ Y V + K +LLN ++ +PG L ALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 752 VLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAK 811
VLAGRKT G I G+I I+G P + F R +GY EQ D+HSP +TV+E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 812 EVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871
GLS+EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 872 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD LLLLKRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = 3e-95
Identities = 174/587 (29%), Positives = 280/587 (47%), Gaps = 36/587 (6%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIRISGFPKKQETFA 779
LL V+ +PG L A+MG SGAGKTTLM+ LA R G G + ++G P +
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
IS Y +Q+D+ P +TV+E L++ A LR+ + V+K++K V+EV+ + L + +
Sbjct: 99 AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRI 158
Query: 840 GLPG-VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T
Sbjct: 159 GVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKT 218
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNP 958
++CTIHQPS ++FE FD+++L+ G+V Y G + + ++ + G P E YNP
Sbjct: 219 IICTIHQPSSELFELFDKIILMA-EGRVAYLGS----PDQAVPFFSDL-GHP-CPENYNP 271
Query: 959 ATWMLEV-----SSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQ 1013
A + ++V S D++ S + + N S A L ++
Sbjct: 272 ADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGK---AGGLVKDSE 328
Query: 1014 ------YSQSTWGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKRED 1067
Y+ S W QF + L + W + R P VR T+ A++IG ++ G ++
Sbjct: 329 NMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKG 388
Query: 1068 TTDLTMIIGAMYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEI 1127
+ I GA++ + + N V V E VF RE +G+Y Y +A+ I E+
Sbjct: 389 VQN---INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAEL 445
Query: 1128 PYVLFQTTYYTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAI 1187
P + +T I Y M+ A F F F+ T +G + + +A
Sbjct: 446 PLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505
Query: 1188 FAAAFYALFNLFSGFFIPR---PWWIWYYWICPVAWTVY---GLIVSQYGDVE--DSISV 1239
F F LF GFFI P + W+ ++W Y GL+++Q+ DV+ + S
Sbjct: 506 VGPPFVIPFLLFGGFFINSDSIPVYFK--WLSYLSWFRYGNEGLLINQWSDVDNIECTSA 563
Query: 1240 PGMAQKPTIKAYIEDHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIK 1286
P+ I + + + LV FF + F ++
Sbjct: 564 NTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALR 610
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 6e-73
Identities = 93/217 (42%), Positives = 135/217 (62%), Gaps = 38/217 (17%)
Query: 714 GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773
++ +LL V+ +PG L A+MG SGAGK+TL++ LAGR+TG + G++ I+G P
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
+ +F +I GY Q+DI P +TV+E+L+++A LR
Sbjct: 76 DKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------- 110
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
GLS +RKR++IA+ELV+NPS++F+DEPTSGLD+ +A VM +R
Sbjct: 111 ------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA 158
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
DTGRT++C+IHQPS +IFE FD+LLLL + G+VIY G
Sbjct: 159 DTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 2e-64
Identities = 143/605 (23%), Positives = 248/605 (40%), Gaps = 62/605 (10%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
++G +GKTTL+ ALA + + +K G + NG ++ + SAY+ Q+D+ + +T
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
V+E L F A + + ++EK E V+ ++
Sbjct: 116 VREHLMFQAH-------LRMPRRVTKKEK------------------RERVDE-VLQA-- 147
Query: 124 LKILGLDICKDTIVGDE-MNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
LGL C +T +G +G+SGG++KR+ ++ LF DE ++GLDS Y
Sbjct: 148 ---LGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS 204
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
+V+ L+ + TI+ ++ QP+ E F+LFD IIL++EG++ Y G ++ + FF G
Sbjct: 205 VVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGH 263
Query: 243 CCPERKGTADFLQEV--TSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLS 300
CPE ADF +V + + K +V++ N S
Sbjct: 264 PCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLV------NTNLWS 317
Query: 301 VPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIAST 360
+ Y A + WL + R+ + + +Q ++ AI+
Sbjct: 318 GKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGL 377
Query: 361 VFLRTRMHTRNENDGALFIGALLFSMIINM--FNGFAELAMTIQRFPVFYKQRDLMFHPV 418
++L G I LF + NM N F + + PVF ++ + V
Sbjct: 378 IYLG----QGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRV 433
Query: 419 WTFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLI 478
+ L + +P+ I ++ +TY+ IG A+ F LV L+ +A + LI
Sbjct: 434 SAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLI 493
Query: 479 AGVCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMY 538
+ + +A T G ++ L GGF + IP +++W ++S YG +N+
Sbjct: 494 SCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ-- 551
Query: 539 APRWMN----RLASDNVTKL----GAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFT 590
W + S N T G +L ++ L I F +L
Sbjct: 552 ---WSDVDNIECTSANTTGPCPSSGEVILETLSFRN--ADLYLDLIGLVILIFFFRLLAY 606
Query: 591 FTLMY 595
F L
Sbjct: 607 FALRI 611
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 2e-56
Identities = 157/601 (26%), Positives = 282/601 (46%), Gaps = 50/601 (8%)
Query: 707 PPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDI 766
P++ ++ + +LN VT PG + A++G SG+GK+TL++ LAGR G G I
Sbjct: 68 KPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI 127
Query: 767 RISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVM 826
+ ++ R G+ Q+DI P +TV+E+L++ + LRL K ++K++KI+ E V+
Sbjct: 128 LANNRKPTKQILKRT-GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVI 186
Query: 827 DLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
+ L ++ I+G + G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++
Sbjct: 187 SELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLV 246
Query: 887 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAI 946
T+ + G+T+V ++HQPS +++ FD +L+L G+ ++ G + Y+E++
Sbjct: 247 LTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKG----SDAMAYFESV 301
Query: 947 PGVPKIKEKYNPATWMLEVSS---------------------AAAEVRLGMDFADAYKSS 985
P NPA ++L++++ A+ L A + S
Sbjct: 302 GFSPSF--PMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMS 359
Query: 986 SLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRCC 1045
Q N V ST + D + S STW S L ++ + +N +R
Sbjct: 360 HFPQANARFVGSASTKEHRSSD-----RISISTWFNQFSILLQRSLKERKHESFNTLRVF 414
Query: 1046 FTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQPVVAVERTVFY 1105
+A AL+ G ++W D D+ +G ++ +F G+ V ER +F
Sbjct: 415 QVIAAALLAGLMWW-----HSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFV 469
Query: 1106 RERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSFEWTAAKFWWFFFVTFFSF 1165
+ERA+GMY+ Y +A+++ ++P L T + + Y M + F V
Sbjct: 470 KERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYV 529
Query: 1166 LYFTYYGM-MTVSITPNHQVAAIFAAAFYALFNLFSGFFIPR--PWWIWYYWICPVAWTV 1222
L G+ + +I + + I A F L GF++ + W +I ++
Sbjct: 530 LVSQGLGLALGAAIMDAKKASTIVTVTMLA-FVLTGGFYVHKLPSCMAWIKYISTTFYSY 588
Query: 1223 YGLIVSQYGDVEDSISVPGMAQKPTIKA----YIEDHFGYEPDFMGPVAAVLVAFTVFFA 1278
LI QYG+ + S+ G + ++E+ + + P +V V +F
Sbjct: 589 RLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQ---ISPATSVSVLIFMFVG 645
Query: 1279 F 1279
+
Sbjct: 646 Y 646
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 2e-55
Identities = 153/643 (23%), Positives = 277/643 (43%), Gaps = 89/643 (13%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY---IEGDIRISGFP-- 772
+L + +PG L ++G G+G +TL+ +A T G+ +EG I G
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGITPE 130
Query: 773 --KKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLA----KEVSKEDKIIFVEEV- 825
KK + Y + D+H P +TV E+L ++A + VS+E+ + +V
Sbjct: 131 EIKKHYRGDVV--YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVY 188
Query: 826 MDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA--- 882
M L ++ VG V G+S +RKR++IA + I D T GLD+ A
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248
Query: 883 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEY 942
++T N +DT T + I+Q S D +E FD++++L G Q IY GP + K +Y
Sbjct: 249 IRALKTSANILDT--TPLVAIYQCSQDAYELFDKVIVLYEGYQ-IYFGP----ADKAKQY 301
Query: 943 YEAIPGVPKIKEKYNPATWMLEVSSAAAE-VRLGM---------DFADAYKSSSLCQRNK 992
+E + G K ++ A ++ ++S A ++ G +F +++S
Sbjct: 302 FEKM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSP---EYA 356
Query: 993 ALVNELSTP------------------PRGAKDLYFATQYSQSTWGQFKSCLWKQWWTYW 1034
L+ E+ + +K ++ Y+ S Q K CL + +
Sbjct: 357 QLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMK 416
Query: 1035 RSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQ 1094
+P + L + AL++ +VF+ + ++T+D GA++ AILF S+ +
Sbjct: 417 GNPSFTLFMVFGNIIMALILSSVFYNL---PKNTSDFYSRGGALFFAILFNAFSSLLEIA 473
Query: 1095 PVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSFEWTAAKF 1154
+ R + + R +Y AIA +I EIP+ + ++ + +I+Y MV+F TA +F
Sbjct: 474 SMYE-ARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRF 532
Query: 1155 WWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFSGFFIPRP----WWI 1210
+++ + F L ++ ++T A AA ++++GF IPRP W
Sbjct: 533 FFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSK 592
Query: 1211 WYYWICPVAWTVYGLIVSQ-------------YGDVEDSISVPGMAQKPTI--------- 1248
W Y++ P+A+ L+V++ G D++ V
Sbjct: 593 WIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVD 652
Query: 1249 -KAYIEDHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNF 1290
Y++ F Y +++ FTVFF F++ +
Sbjct: 653 GDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 1e-54
Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 8/214 (3%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIRISGFPKKQET 777
R+LN+V+ G + A++G SG+GKTTL+D ++GR GG G I +G P+K +
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKD 836
F + Y Q+DI P +TV+E+L Y+A LRL ++ S + + L L
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD-----AIRKKRVEDVLLRDLAL 133
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
+G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+
Sbjct: 134 TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRN 193
Query: 897 RTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
R V+ TIHQP D+F FD +LLL G ++YSG
Sbjct: 194 RIVILTIHQPRSDLFRLFDRILLLSSGE-IVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 2e-51
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 11/215 (5%)
Query: 1021 QFKSCLWKQWWTYWRSPDYNLV-RCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMY 1079
Q K+ L +++ WR P L+ R L AL+ GTVF + T + G ++
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLLF 57
Query: 1080 AAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTL 1139
+ILF S+ + + PV ER V RE A+ +YS Y +A+++VE+P L Q + L
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1140 IVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLF 1199
IVY MV + +F+ F V + L + G+ ++ P+ + A+ L
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1200 SGFFIPRP----WWIWYYWICPVAWTVYGLIVSQY 1230
SGFFIP W W Y++ P+ + + L +++
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-43
Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 8/216 (3%)
Query: 324 ELLKACWDKEWLLIKRNSFV-YVSKTVQLIIVAIIASTVFLRTRMHTRNENDGALFIGAL 382
LKA +E+L R+ + + + +Q +++A++ TVF G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 383 LFSMIINMFNGFAELAMT-IQRFPVFYKQRDLMFHPVWTFTLPTFLLRIPISIFESVVWV 441
FS++ N F+ ++ I+ V ++ + + L L+ +PIS+ ++++++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 442 VVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAGVCRTMIIANTGGALTLLVVFL 501
++ Y+ +G SRFF L++ L A+ + IA + + A+ G L LL + L
Sbjct: 117 LIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 502 LGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEM 537
L GF +P +P W +W Y+++PL Y A NE
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 5e-43
Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 60/228 (26%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
M L+LG P SG +TLL ALA + ++ V G D+H
Sbjct: 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEG------------------------DIHYN 70
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
+ KE F+ + E I+ E D+ V +L
Sbjct: 71 GIPYKE---FAEKY--------------PGEI---IYVSEE-DVHFPTLT---VRETL-- 104
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
D+ L+ CK G+E RGISGG++KRV+ E +V L D + GLDSST
Sbjct: 105 DFALR------CK----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+I+KC++ + V T +SL Q + E +DLFD +++L EG+ +Y G
Sbjct: 155 LEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 157 bits (400), Expect = 1e-42
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 13/217 (5%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP--KKQ 775
L+ V+ PG + L+G +GAGKTTL+ +LAG G+I + G+ K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
R GY Q P++TV+E+L + A L + E++I EE+++L LE
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERI---EELLELFGLEDKA 130
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
+ V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932
G + + E D +++L G++I G
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILND-GKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 2e-39
Identities = 152/639 (23%), Positives = 280/639 (43%), Gaps = 94/639 (14%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIRISGFPKKQET 777
KL +L + + +P + L+G +GKTTL+ LAG+ + G+I +G+ +
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSA--------FLRLAKEVSKE-DKIIFVEEVMDL 828
+ S Y QND+H +TVKE+L +SA + L++ +E D IF E +DL
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 829 ---------VE-------------LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866
V+ L+ KD IVG + G+S Q+KR+T +V
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 867 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925
+FMDE ++GLD+ +++ ++ V T TV+ ++ QP+ + F+ FD+++LL GQ
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQ 415
Query: 926 VIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVSSAAAEVRLGMD-------- 977
++Y GP ++E++E+ G K E+ A ++ EV+S + + D
Sbjct: 416 IVYQGP----RDHILEFFESC-GF-KCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYI 469
Query: 978 ----FADAYKSSSLCQRNKALVNELSTP---PRGAKDLYFATQYSQSTWGQFKSCLWKQW 1030
FA+ +KS + + L NELS P + K ++YS K+C K+W
Sbjct: 470 SVSEFAERFKSFHVGMQ---LENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEW 526
Query: 1031 WTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGA-MYAAI--LFVGI 1087
R+ + + + A + TVF + + D + IGA +++ I +F G
Sbjct: 527 LLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGF 586
Query: 1088 SNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSF 1147
+ + ++ VFY++R + + + ++ IP + ++ + +I Y + F
Sbjct: 587 AELA----LMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGF 642
Query: 1148 EWTAAKFWWFFFVTFF-----SFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFSGF 1202
A++F+ + F + ++ + I N A + F L GF
Sbjct: 643 APEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVF-----LLGGF 697
Query: 1203 FIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPT------IKAYI 1252
+P+ WW W YW+ P+++ L V++ + P K + +
Sbjct: 698 ILPKGEIPNWWEWAYWVSPLSYGFNALAVNE-------MFAPRWMNKMASDNSTRLGTAV 750
Query: 1253 EDHFG--YEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLN 1289
+ F + ++ L+ FT+ F +F + LN
Sbjct: 751 LNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789
|
Length = 1470 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-38
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 38/229 (16%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+ +LG SGKTTLL A++G++ G+I +NG QK AY+ Q+D+ +
Sbjct: 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLP 94
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
+TV+ETL ++A S+ R+++
Sbjct: 95 GLTVRETLTYTAILRL----PRKSSDAIRKKRVE-------------------------- 124
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG-EMIVGPTKTLFMDEISTGLDSST 179
+ L T +G + +GISGG+++RV+ +++ P K L +DE ++GLDS T
Sbjct: 125 -----DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP-KVLILDEPTSGLDSFT 178
Query: 180 TYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+V L Q+ + +++++ QP + F LFD I+LLS G+IVY G
Sbjct: 179 ALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 4e-35
Identities = 142/544 (26%), Positives = 250/544 (45%), Gaps = 72/544 (13%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
+LGP SGK+TLL ALAG++ + G I N + + + ++T +++Q+D+ +T
Sbjct: 99 VLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRT-GFVTQDDILYPHLT 156
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
V+ETL F + L L ++EK L+ +
Sbjct: 157 VRETLVFCS-------LLRLPKSLTKQEK------------------------ILVAESV 185
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTG-EMIVGPTKTLFMDEISTGLDSSTTYQ 182
+ LGL C++TI+G+ RGISGG++KRV+ EM++ P+ L +DE ++GLD++ Y+
Sbjct: 186 ISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-LLILDEPTSGLDATAAYR 244
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
+V L + TI+ S+ QP+ + +FD +++LSEG+ ++ G + +FES GF
Sbjct: 245 LVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGF 303
Query: 243 CCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISV-----TEFANRFKSFHIGMHL-- 295
ADFL ++ + Q ++R KP S+ T A + K+ H
Sbjct: 304 SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQ 363
Query: 296 ENQLSVPFDKSQGHRAAIV------FKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTV 349
N V ++ HR++ F ++++ LK K SF + +
Sbjct: 364 ANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE--------RKHESFNTL-RVF 414
Query: 350 QLIIVAIIASTVFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYK 409
Q+I A++A ++ + + G LF S+ +F F + + Q +F K
Sbjct: 415 QVIAAALLAGLMWWHSDFRDVQDRLGLLF----FISIFWGVFPSFNSVFVFPQERAIFVK 470
Query: 410 QRDLMFHPVWTFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQ 469
+R + + ++ + + +P+ + +++ VTY+ G PE F LLV L
Sbjct: 471 ERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLT-LLVLLGYV 529
Query: 470 MAAAMFRLIAGVCRTMII----ANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPL 525
+ + L G I+ A+T +T+L L GGF V K +P+ W ++S
Sbjct: 530 LVSQGLGLALGAA---IMDAKKASTIVTVTMLAFVLTGGFYVHK--LPSCMAWIKYISTT 584
Query: 526 AYGY 529
Y Y
Sbjct: 585 FYSY 588
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 9e-34
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 38/219 (17%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISGFPKK 774
K+ +L + + +PG + ++G G+G +TL+ LA R T G +EGDI +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 775 Q--ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
+ E + Y + D+H P +TV+E+L ++ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 893 VD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
D T +++Q S +I++ FD++L+L G+ IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-31
Identities = 73/274 (26%), Positives = 123/274 (44%), Gaps = 51/274 (18%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ--KTSAYISQNDVH 58
+ LLGP +GKTTLL LAG L GEI GY + + + + Y+ Q
Sbjct: 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
E+TV+E L+F AR G+ E+
Sbjct: 90 YPELTVRENLEFFARLYGLSKEE--------AEERI------------------------ 117
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
+ L++ GL+ + V R +SGG K+R++ ++ + L +DE ++GLD
Sbjct: 118 --EELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 179 TTYQIVKCLQQIVHVTDATILMS--LLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEF 236
+ +I + L+++ TIL+S +L+ E +L D +I+L++G+I+ +G E + E
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVIILNDGKIIAEGTPEELKEK 227
Query: 237 FESCGFCC--PERKGTADFLQEVTSRKDQEQYWA 268
F G PER A+ L+ + K +E+
Sbjct: 228 FGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-29
Identities = 61/213 (28%), Positives = 109/213 (51%), Gaps = 21/213 (9%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFA- 779
+++++ G + L+G +GAGKTT + +L G R T G I+G+ + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAA 73
Query: 780 -RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
+ GYC Q D ++TV+E L + A RL K + K + VE ++ ++ L +
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYA--RL-KGLPKSEIKEEVELLLRVLGLTDKANKR 130
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 899 VVCTIHQPSIDIFEAF-DELLLLKRGGQVIYSG 930
++ T H S+D EA D + ++ G++ G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSD-GKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 71/215 (33%), Positives = 108/215 (50%), Gaps = 16/215 (7%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP--KKQ 775
K R L+ V+ PG+ L+G +GAGKTTLM +LA G IRI G K+
Sbjct: 11 GKKRALDGVSLTLGPGMYG-LLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLKQP 67
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
+ R GY Q P TV+E L Y A+L K + ++ V+EV++LV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWL---KGIPSKEVKARVDEVLELVNLGDRA 124
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
+G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
R V+ + H D+ +++ +L G++++ G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 23/210 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET---F 778
L++++ + G ++G +G+GK+TL+ +L G G G++ + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 779 ARISGYCEQNDIHSPQV-----TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
R G QN P TV+E + + L + +E+ VEE ++LV LE
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFG--LENLG-LPEEEIEERVEEALELVGLEG 126
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
L+D LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 127 LRDRSPFT-----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK 181
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
G+T++ H + E D +++L+ G
Sbjct: 182 AEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 68/216 (31%), Positives = 112/216 (51%), Gaps = 25/216 (11%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
L +V+ +PG A++G +GAGK+TL+ + G + T G IR+ G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 781 ISGYCEQN---DIHSPQVTVKESL---IYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
I GY Q D P ++V++ + +Y L + +SK DK V+E ++ V L L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYG-HKGLFRRLSKADKAK-VDEALERVGLSEL 125
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
D +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 126 ADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180
Query: 895 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
G T++ H + + E FD +LLL R V+ SG
Sbjct: 181 EGMTILVVTHDLGL-VLEYFDRVLLLNRT--VVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-25
Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 22/219 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP---KKQETF 778
+L++++ + G + ++G +G+GK+TL+ LAG G++ + G +
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKEL 74
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAF--LRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
A+ Y Q+ +TV E ++ + L L SKED+ I VEE ++L+ LE L D
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI-VEEALELLGLEHLAD 133
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 895
V LS +R+R+ IA L I+ +DEPTS LD V+ +R+ +
Sbjct: 134 RPV-----DELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188
Query: 896 GRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGP 931
G TVV +H D+ A D L+LLK G+++ G
Sbjct: 189 GLTVVMVLH----DLNLAARYADHLILLKD-GKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 21/225 (9%)
Query: 714 GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773
V+ +L +++ + G + AL+G +GAGK+TL+ + G G+I+I G P
Sbjct: 11 TVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68
Query: 774 KQETFARISGYCEQNDIHSPQ--VTVKE-----SLIYSAFLRLAKEVSKEDKIIFVEEVM 826
++ GY Q +TVK+ + R + KE V+E +
Sbjct: 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEAL 124
Query: 827 DLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
+ V +E L+D +G LS Q++R+ +A L NP ++ +DEP +G+D +
Sbjct: 125 ERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY 179
Query: 887 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
++ G+TV+ H + + FD ++ L R +I SGP
Sbjct: 180 DLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH--LIASGP 221
|
Length = 254 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 3e-23
Identities = 62/213 (29%), Positives = 103/213 (48%), Gaps = 20/213 (9%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKK 774
+ +L++++ G + AL G +GAGKTTL +LAG +++ G I ++G P K
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIK 65
Query: 775 QETFARISGYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
+ + GY Q+ D +V+E L+ KE+ ++ E V+ ++L +
Sbjct: 66 AKERRKSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQA--ETVLKDLDLYA 118
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
LK+ P LS Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 119 LKER---HP--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
G+ V+ H + + D +LLL G V
Sbjct: 174 AQGKAVIVITHDYEF-LAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 1e-22
Identities = 38/87 (43%), Positives = 64/87 (73%), Gaps = 3/87 (3%)
Query: 143 RGISGGQKKRVTTG-EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMS 201
RG+SGG++KRV+ E++ P+ LF+DE ++GLDSS+ Q++ L+++ T TI+ S
Sbjct: 110 RGLSGGERKRVSIALELVSNPS-LLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICS 167
Query: 202 LLQPAPETFDLFDDIILLSEGQIVYQG 228
+ QP+ E F+LFD ++LLS+G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 3e-22
Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 542 WMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPGK 601
W + N T LG AVL + + WYWIG AL GF +LFN+LFT L YLNP GK
Sbjct: 1 WSKPFSGSNET-LGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGK 59
Query: 602 PQAVLS 607
QA++S
Sbjct: 60 SQAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 94.8 bits (237), Expect = 3e-22
Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 46/215 (21%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG-RKTGGYIEGDIRISGFPKKQE 776
+L++++ + G + ++G +GAGK+TL+ LAG K G+I + G
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDG------ 60
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
D+ S KE+++ KI +V + ++L+ L L D
Sbjct: 61 -----------KDLASLS---------------PKELAR--KIAYVPQALELLGLAHLAD 92
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 895
LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 93 R-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER 147
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
G+TVV +H ++ D ++LLK G+++ G
Sbjct: 148 GKTVVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 9e-22
Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 59/215 (27%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
E++ L+ V+ + G + AL+G +G+GK+TL+ I
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRA---------------I 45
Query: 769 SGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDL 828
+G K I G DI
Sbjct: 46 AGLLKPTSGEILIDG----KDIAK------------------------------------ 65
Query: 829 VELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
+ LE L+ I +P LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++
Sbjct: 66 LPLEELRRRIGYVPQ---LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 889 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+R + GRTV+ H P A D +++LK G
Sbjct: 123 LRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 18/221 (8%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 776
+ L +V+ G L+G +G+GK+TL+ +L G G++ + G E
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSSE 71
Query: 777 T----FARISGYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL 831
+ G QN D TV++ + AF + +E+ V E ++LV L
Sbjct: 72 KSLLELRQKVGLVFQNPDDQLFGPTVEDEV---AFGLENLGLPREEIEERVAEALELVGL 128
Query: 832 ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
E L D LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 129 EELLDRPPF-----NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK 183
Query: 892 TV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ G+T++ H + E D +++L G+++ G
Sbjct: 184 LKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.8 bits (232), Expect = 1e-21
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 53/205 (25%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFP--KKQETF 778
L++++ G + L+G +GAGKTTL+ ++ G + G+I++ G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEV 71
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
R GY + +TV+E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRG 923
++ + H + D + +L G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 1e-21
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIR 767
K G+ +K+ L +V G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 768 ISGFPKKQ--ETFARISGYCEQNDIHS--PQVTVKESLIYSAFLRLAKEVSKEDKIIFVE 823
++ +K+ + + G+ QN + P +TV E++ + ++ +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELL 126
Query: 824 EVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
EV+ L + K + LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 127 EVLGLEDRLLKKK-------PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 884 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924
V+ +R + G+T++ H P ++ + D ++ LK G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 3e-21
Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 22/222 (9%)
Query: 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIR 767
K G +K++ L V+ + G A++G SG+GK+TL+++L G R T G +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD 67
Query: 768 ISGFPKKQETFAR---ISGYCEQNDIHS--PQVTVKESLIYSAFLRLAKEVSKEDKIIFV 822
IS +K+ R I G+ Q+ + P +T E++ L LA KE +
Sbjct: 68 ISKLSEKELAAFRRRHI-GFVFQS--FNLLPDLTALENVELP--LLLAGVPKKERRER-A 121
Query: 823 EEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 882
EE+++ V L + LS Q++R+ IA L +P II DEPT LD+
Sbjct: 122 EELLERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176
Query: 883 AIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
VM +R + G T+V H P ++ E D ++ L+ G
Sbjct: 177 KEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-20
Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 24/222 (10%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK--- 773
D L+++ + G L AL+G SGAGK+TL+++L G +G+IR++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
E + + + QN + T++E++ LA+ + +++II +D L
Sbjct: 389 SPEAWRKQISWVSQNP-YLFAGTIRENI------LLARPDASDEEII---AALDQAGLLE 438
Query: 834 LKDAIVGLPGVTG-----LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
GL V G LS Q +RL +A L++ S++ +DEPT+ LDA I+++
Sbjct: 439 FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA 498
Query: 889 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
++ +TV+ H+ D +A D +++L G+++ G
Sbjct: 499 LQELAK-QKTVLVITHRLE-DAADA-DRIVVLDN-GRLVEQG 536
|
Length = 559 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 32/225 (14%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFPKKQE-- 776
R L++V+ RPG AL+G +GAGK+TL +L T Y+ EG I ++G ++
Sbjct: 15 RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPR 70
Query: 777 -TFARISGYCEQNDIHSPQVTVKESLIYSAFL-----RLAKEVSKEDKIIFVEEVMDLVE 830
AR+ +Q + ++V+++L Y A L A +I E++ +
Sbjct: 71 AALARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEA-----RARI---AELLARLG 121
Query: 831 LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
L D V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR
Sbjct: 122 LAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVR 176
Query: 891 N-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934
D G +V+ H +D EA D L++L R G+V+ G
Sbjct: 177 ALARDQGLSVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 4e-20
Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
L +V+ + PG AL+G SGAGK+TL+ L G T G + I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 780 RI-SGYCEQNDIHSPQVTVKE-----SLIYSAFLR-LAKEVSKEDKIIFVEEVMDLVELE 832
R G Q +++V E L + R L KE+K L
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQR---------ALA 127
Query: 833 SLKDAIVGLPG-----VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
+L+ VGL LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 128 ALER--VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 888 TVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
++ + G TV+ ++HQ + E D ++ LK G++++ GP
Sbjct: 186 LLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 4e-20
Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 25/214 (11%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKK 774
+R L++++ PG AL+G SG GKTTL+ ++AG R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELES 833
+ R G Q+ P +TV E++ AF L+L V K + V E+++LV LE
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENI---AFGLKLRG-VPKAEIRARVRELLELVGLEG 122
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT- 892
L + LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 123 LLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177
Query: 893 VDTGRTVVCTIHQPSIDIFEAF---DELLLLKRG 923
+ G T + H D EA D + ++ G
Sbjct: 178 RELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 8e-20
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 53/208 (25%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
LN+V+ G + AL+G SG+GK+TL+ +AG G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
R G Q+ P +TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 898
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 899 VVCTIHQPSIDIFEAF---DELLLLKRG 923
VV H D+ EA D +++L+ G
Sbjct: 154 VVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 1e-19
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+T ++GP +GK+TLL ALAG+ L V GE+ NG L++ +K Y+ Q+D+
Sbjct: 37 LTAIMGPSGAGKSTLLNALAGRRTG-LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHP 95
Query: 61 EMTVKETLDFSARCLGV 77
+TV+ETL F+A+ G+
Sbjct: 96 TLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 3e-19
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIRISGFPKKQET 777
L + PG A++G SGAGK+TL+ + + G I DI K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 778 FARISGYCEQNDIHSPQVTVKESLI-----YSAFLR-LAKEVSKEDKIIFVEEVMDLVEL 831
RI G Q+ ++TV E+++ Y R L S+EDK E + +E
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDK----ERALSALER 132
Query: 832 ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
L D LS Q++R+ IA L P +I DEP + LD + + VM ++
Sbjct: 133 VGLAD--KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 892 -TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ G TV+ +HQ +D+ + + + ++ + G++++ G
Sbjct: 191 INKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 67/234 (28%), Positives = 112/234 (47%), Gaps = 42/234 (17%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISGFPKKQ 775
L L++V+ + RPG + L+G +GAGKTTL ++++G R T G +G+ I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHE 71
Query: 776 -------ETFARISGYCEQNDIHSPQV----TVKESLIYSAFLR------LAKEVSKEDK 818
TF Q P++ TV E+++ +A R LA+ +E +
Sbjct: 72 IARLGIGRTF--------QI----PRLFPELTVLENVMVAAQARTGSGLLLARARREERE 119
Query: 819 II-FVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877
EE+++ V L L D G LS Q++RL IA L +P ++ +DEP +GL
Sbjct: 120 ARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 878 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ + +R + G TV+ H + + D + +L + G+VI G
Sbjct: 175 NPEETEELAELIRELRERGITVLLVEHDMDV-VMSLADRVTVLDQ-GRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 58/220 (26%), Positives = 108/220 (49%), Gaps = 24/220 (10%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIRISGFP-K 773
K++ + +V+ G + L+G +GAGKTTL+ ++A + G + I G
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT-----LLIPDSGKVTIDGVDTV 67
Query: 774 KQETFAR--ISGYCEQNDIHSPQVTVKESLIYSAFLR-LAKEVSKEDKIIFVEEVMDLVE 830
+ +F R I + +++ ++T +E+L Y A L L+++ K + E+ ++
Sbjct: 68 RDPSFVRRKIGVLFGERGLYA-RLTARENLKYFARLNGLSRKEIKAR----IAELSKRLQ 122
Query: 831 LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
L D VG S ++++ IA LV +PSI+ +DEPTSGLD R ++
Sbjct: 123 LLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIK 177
Query: 891 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ GR V+ + H ++ D +++L + G+V+ G
Sbjct: 178 QLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 16/202 (7%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGD-IRISGFPKKQETFARISGYCEQN 788
PG + L+G +GAGKTT + +LAG G+ D + P E R+ G+ +
Sbjct: 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP--AEARRRL-GFVSDS 86
Query: 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLS 848
++T +E+L Y A L K + +EE+ D + +E L D VG G S
Sbjct: 87 TGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELADRLGMEELLDRRVG-----GFS 138
Query: 849 IEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 908
R+++ IA LV +P ++ +DEPT+GLD A + +R G+ ++ + H
Sbjct: 139 TGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ- 197
Query: 909 DIFEAFDELLLLKRGGQVIYSG 930
++ D +++L R G+V+Y G
Sbjct: 198 EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 54/227 (23%), Positives = 92/227 (40%), Gaps = 47/227 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ--KTSAYISQNDVHVGE 61
LLG +GKTT L L G+L G NGY + ++ Y Q D E
Sbjct: 33 LLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDE 89
Query: 62 MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITD 121
+TV+E L F AR G+ P++EI +
Sbjct: 90 LTVREHLRFYARLKGL--------------------PKSEIK--------------EEVE 115
Query: 122 YTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTY 181
L++LGL + +SGG K++++ ++G L +DE ++GLD ++
Sbjct: 116 LLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170
Query: 182 QIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
I + ++ +I+++ E L D I ++S+G++ G
Sbjct: 171 AIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-18
Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 30/211 (14%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE------GDIRISGFPKKQETFARISG 783
+ + G SGAGK+TL+ +AG + GG I D R Q+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ---RKIG 78
Query: 784 YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG 843
Q P + V+E+L + L ++ ++ED+I V+E++DL+ L+ L +
Sbjct: 79 LVFQQYALFPHLNVRENLAFG----LKRKRNREDRI-SVDELLDLLGLDHLLNR-----Y 128
Query: 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCT 902
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188
Query: 903 IHQPSIDIFEAF---DELLLLKRGGQVIYSG 930
H S EA D ++++ G++ Y G
Sbjct: 189 THDLS----EAEYLADRIVVM-EDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 6e-18
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 19/212 (8%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETF 778
R+L++++ + G + +G +GAGKTT M ++ G + G I + K E
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEAL 71
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
RI E + P +T +E+L A L K I +EV+D+V L+
Sbjct: 72 RRIGALIEAPGFY-PNLTARENLRLLARLLG-----IRKKRI--DEVLDVVGLKDSAKKK 123
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
V G S+ ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G T
Sbjct: 124 VK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
V+ + H S +I + D + ++ G++I G
Sbjct: 179 VLISSHLLS-EIQKVADRIGII-NKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 6e-18
Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 22/211 (10%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI----EGDIRISGFPKKQETF 778
L++++ + G + L+G +GAGKTT + ++ G I G++ G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
RI GY + P++ V + L+Y A L K + KE+ ++E ++ +EL +
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQL---KGLKKEEARRRIDEWLERLELSEYANKR 125
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+T
Sbjct: 126 V-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 899 VVCTIHQPSIDIFEAF-DELLLLKRGGQVIY 928
V+ + HQ +++ E D +LLL +G V+Y
Sbjct: 181 VILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 2e-17
Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 21/226 (9%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGD-IRISGFPKK 774
+ L +V G + A++G SGAGK+TL+ L G T G I + ++I+ K
Sbjct: 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK 74
Query: 775 QETFARIS-GYCEQNDIHSPQVTVKESLI------YSAFLRLAKEVSKEDKIIFVEEVMD 827
+ R G Q P+++V E+++ S + L SKEDK ++
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA--- 131
Query: 828 LVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
L + L A + LS Q++R+ IA LV P II DEP + LD +A VM
Sbjct: 132 LERVGILDKA---YQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 888 TVR--NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
++ N D G TV+ +HQ +D+ + + + ++ + G++++ GP
Sbjct: 189 ILKDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 3e-17
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 16/194 (8%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKK 774
+L + A G + AL+G +GAGK+TL+ L G R G + D + +K
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 775 QETFARIS-GYCEQN---DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE 830
R G Q+ + + V + + AF L +S+ + V E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDV---AFGPLNLGLSEAEVERRVREALTAVG 116
Query: 831 LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
L++ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 117 ASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 891 NTVDTGRTVVCTIH 904
G TVV + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 4e-17
Identities = 61/217 (28%), Positives = 108/217 (49%), Gaps = 19/217 (8%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIRISGFPKKQE 776
+++ V PG L L+G +G+GK+TL+ +LAG R G ++ D+ G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH--GLSRRAR 73
Query: 777 TFARISGYCEQNDIHSPQVTVKE--SLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
AR EQ+ + +TV++ +L L S D + V+ + EL L
Sbjct: 74 --ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV-VDRALARTELSHL 130
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
D ++ LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 131 ADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA 185
Query: 895 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
TG TVV +H +++ ++ + +++ GG+V+ +GP
Sbjct: 186 TGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-16
Identities = 67/246 (27%), Positives = 109/246 (44%), Gaps = 37/246 (15%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQ- 775
L +N+V+ RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 776 ------ETFARISGYCEQNDIHSPQVTVKESLI--------YSAFLRLAKEVSKEDKIIF 821
TF Q P +TV E++ S L + +E +
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 822 -VEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
E+++ V L L D G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 881 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG--RNSH 937
+ +R D G T++ H + + D +++L G+VI G RN+
Sbjct: 184 ETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVL-NYGEVIAEGTPEEVRNNP 241
Query: 938 KVIEYY 943
+VIE Y
Sbjct: 242 RVIEAY 247
|
Length = 250 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET-FARIS-GYCEQN 788
+ G L+G +GAGKTT + +L G G I + G P AR G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRVGVVPQF 88
Query: 789 DIHSPQVTVKESL-IYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGL 847
D P TV+E+L ++ + L+ ++ V +++ +LE+ DA VG L
Sbjct: 89 DNLDPDFTVRENLLVFGRYFGLSAAAARA----LVPPLLEFAKLENKADAKVG-----EL 139
Query: 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 904
S ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFPKKQETFAR 780
L ++ + +PG A++G +GAGKTTL+++L Y +G I I G + +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 781 IS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ESLK- 835
+ G Q D T+ E++ RL + + ++++I + + L
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENI------RLGRPNATDEEVIEAAKEAGAHDFIMKLPN 127
Query: 836 --DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
D ++G LS +R+ L IA ++ +P I+ +DE TS +D ++ + +
Sbjct: 128 GYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
GRT + H+ S I A D++L+L G++I G
Sbjct: 187 K-GRTSIIIAHRLST-IKNA-DKILVLDD-GKIIEEG 219
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-16
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
L +V G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
R QN P +TV E++ + L+L V K + V+EV L+ LE L +
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFG--LKLRG-VPKAEIDKRVKEVAKLLGLEHLLNRKP 131
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
L++++ + G L AL+G SGAGK+TL+ ++AG G I + R+ R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKI-IFVEEVMDLVELESLKDAI 838
G+ Q+ P +TV +++ AF L++ KE E +I VEE++ LV+LE L D
Sbjct: 78 KVGFVFQHYALFPHMTVADNI---AFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR- 133
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 897
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 134 --YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 898 TVVCTIHQPSIDIFEAFDELLLLKRG 923
T V H + E D +++L +G
Sbjct: 190 TTVFVTHDQE-EALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 3e-16
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 36/225 (16%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISGFPKKQETF 778
L V R G + A++G SG+GK+TL+ ++ G R G I+G+ +
Sbjct: 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75
Query: 779 ARISGYCEQ-----NDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELE 832
R G Q + + TV E++ AF LR E ++ + EE+ ++V
Sbjct: 76 RRRMGMLFQSGALFDSL-----TVFENV---AFPLR---EHTRLSE----EEIREIVLE- 119
Query: 833 SLKDAIVGLPGV-----TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
K VGL G LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 --KLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDD 177
Query: 888 TVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+R+ G T + H F D + +L G+++ G
Sbjct: 178 LIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 3e-16
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 39/226 (17%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISGFPKKQ---E 776
+L +++ PG A++G SG+GK+TL+ +L G Y +G I + G
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLA 543
Query: 777 TFARISGYCEQNDI--HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
+ R GY Q+ +++E + L + + EE+++ +L
Sbjct: 544 SLRRQVGYVLQDPFLFSG---SIRE------NIALGNPEATD------EEIIEAAQLAGA 588
Query: 835 KDAIVGLP---------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
+ I LP G LS QR+RL +A L++ P I+ +DE TS LD AI+
Sbjct: 589 HEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII 648
Query: 886 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
++ + + GRTV+ H+ S + D +++L G+++ G
Sbjct: 649 LQNLL-QILQGRTVIIIAHRLS--TIRSADRIIVLD-QGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 58/246 (23%), Positives = 105/246 (42%), Gaps = 49/246 (19%)
Query: 697 FDSV-YYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG 755
F +V + Y P + + L R G A++G G+GK+TL+ +LAG
Sbjct: 5 FRNVSFSY----PNQEIPALDNVSLT--------IRAGEKVAIIGRVGSGKSTLLKLLAG 52
Query: 756 RKTGGYI--EGDIRISGFPKKQ----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRL 809
Y G + + G +Q + I GY Q D+ T+++++ A L
Sbjct: 53 L----YKPTSGSVLLDGTDIRQLDPADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA--PL 104
Query: 810 AKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP---------GVTGLSIEQRKRLTIAVE 860
A + E ++ EL + D + P GLS QR+ + +A
Sbjct: 105 ADD----------ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 861 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D ++++
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVM 211
Query: 921 KRGGQV 926
G V
Sbjct: 212 DSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 3e-16
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 22/201 (10%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK--- 773
+ L V+ PG AL+G SGAGK+TL+++L G EG I ++G P
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADA 389
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-E 832
+++ + Q+ T+ E++ RLA+ + + +I E ++ L E
Sbjct: 390 DADSWRDQIAWVPQHP-FLFAGTIAENI------RLARPDASDAEI---REALERAGLDE 439
Query: 833 SLKDAIVGL-----PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
+ GL G GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 888 TVRNTVDTGRTVVCTIHQPSI 908
+R + GRTV+ H+ ++
Sbjct: 500 ALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 4e-16
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK--TGGYIE-GDIRISGFPKKQETFA 779
L+ + + G L+G SGAGK+TL+ ++ + T G I +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 780 RIS-GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
R G Q+ P V E++ AF A EV+ + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENV---AF---ALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 899 VVCTIHQPSI 908
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 5e-16
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 24/209 (11%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
+++++ + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP----PEK 76
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
R G Q+ P +TV+E AF L++ K++ K + VEE ++LV LE D
Sbjct: 77 RPIGMVFQSYALFPHMTVEE---NVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK 133
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGR 897
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G
Sbjct: 134 P-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI 188
Query: 898 TVVCTIHQPSIDIFEAF---DELLLLKRG 923
T V H D EA D + ++ G
Sbjct: 189 TFVYVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 6e-16
Identities = 58/239 (24%), Positives = 92/239 (38%), Gaps = 47/239 (19%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+T L+GP +GK+TLL A+ G L GEI G + + + Y+ Q
Sbjct: 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR 88
Query: 61 E--MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
+TVK+ + LG + L +++K ++D ++ ME +
Sbjct: 89 SFPITVKDVVL-----LGRYGKKGWFRRLNKKDK-------EKVDEALERVGMEDLRDRQ 136
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
I L SGGQK+RV + L +DE TG+D +
Sbjct: 137 I--GEL---------------------SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 179 TTYQIVKCLQQIVHVTDATILMSL--LQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+I L+++ T+LM L FD +I L ++ GP E VL
Sbjct: 174 GQKEIYDLLKELRQ-EGKTVLMVTHDLGLVM---AYFDRVICL-NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 6e-16
Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 28/198 (14%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPKKQET 777
+L+ V+ PG A++G SG+GK+TL+ LAG G + +S Q+
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD--QDE 406
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
R C Q D H TV+E+L RLA+ + + EE+ +E L D
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENL------RLARPDATD------EELWAALERVGLADW 453
Query: 838 IVGLPG-----VTG----LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
+ LP + LS +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 454 LRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 889 VRNTVDTGRTVVCTIHQP 906
+ +GRTVV H
Sbjct: 514 LLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 9e-16
Identities = 62/219 (28%), Positives = 116/219 (52%), Gaps = 22/219 (10%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTL---MDVLAGRKTGG-YIEGDIRISGFPKKQE 776
+L++V+ G + +++G +GAGK+TL M L + +G I+G + ++ P +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTPS-KE 72
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
++S ++N I+S ++TV++ + + F ++KED+ I + E ++ + LE L D
Sbjct: 73 LAKKLSILKQENHINS-RLTVRDLVGFGRFPYSQGRLTKEDRRI-INEAIEYLHLEDLSD 130
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 895
+ LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 131 RYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 896 GRTVVCTIHQPSIDIFEA---FDELLLLKRGGQVIYSGP 931
G+T+V +H DI A D ++ LK G+V+ G
Sbjct: 186 GKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 1e-15
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 58/207 (28%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ---E 776
+L +V+ +PG A++G SG+GK+TL+ +L T G+I I G + E
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT----SGEILIDGVDLRDLDLE 72
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
+ + Y Q + ++S ++++
Sbjct: 73 SLRKNIAYVPQ-----------DPFLFSG---------------------------TIRE 94
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
I LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R + G
Sbjct: 95 NI--------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAKG 145
Query: 897 RTVVCTIHQPSIDIFEAFDELLLLKRG 923
+TV+ H+ S D +++L G
Sbjct: 146 KTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-15
Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 30/198 (15%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFP--K 773
+ ++ V R G + +G +GAGKTT + +L R T G R++G+ +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESL-------IYSAFLRLAKEVSKEDKIIFVEEVM 826
+ R G Q +V E L + L K+ ++E EE++
Sbjct: 60 EPRKVRRSIGIVPQ------YASVDEDLTGRENLEMMGRLYGLPKDEAEER----AEELL 109
Query: 827 DLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
+L EL D VG S R+RL IA L+ P ++F+DEPT+GLD R +
Sbjct: 110 ELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164
Query: 887 RTVRNTVDTGRTVVCTIH 904
+R + G T++ T H
Sbjct: 165 DYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 56/217 (25%), Positives = 81/217 (37%), Gaps = 49/217 (22%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISG---- 770
E K +L V + G + A+MG +G+GK+TL + G Y EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 771 ------------FPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLA-KEVSKED 817
F Q I G VT + FLR A
Sbjct: 72 ELSPDERARAGIFLAFQYP-VEIPG-----------VTNSD------FLRAAMNARRGAR 113
Query: 818 KIIF-----VEEVMDLVEL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871
I+ ++E +L+ L E + V G S ++KR I L+ P + +D
Sbjct: 114 GILPEFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKKRNEILQLLLLEPKLAILD 169
Query: 872 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 908
EP SGLD A IV + + GR V+ H +
Sbjct: 170 EPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFP--K 773
+ V+ R G + L+G +GAGKTT + +L + T G ++G +
Sbjct: 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVR 66
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESL-IYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
+ R G Q+ ++T E+L I++ + +E ++E++D V L
Sbjct: 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRER----IDELLDFVGLL 122
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
D +V S R+RL IA LV P ++F+DEPT GLD + A V +
Sbjct: 123 EAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177
Query: 893 VDT-GRTVVCTIH 904
+ G T++ T H
Sbjct: 178 KEEFGMTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-15
Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 31/247 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
++ ++ PG + L+G +GAGKTT ++ G EG+I +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 783 GYC-EQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
GY E+ ++ P++TV++ L Y A L K + K + +++ LE L+ IVG
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAEL---KGMPKAE---IQKKLQAW--LERLE--IVGK 123
Query: 842 PG--VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
+ LS ++++ ++ P ++ +DEP SGLD ++ + + G T+
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATI 183
Query: 900 VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG--RNSH--KVI--------EYYEAIP 947
+ + H+ + E D LL+LK+ GQ + G + R S K + E IP
Sbjct: 184 IFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELANIP 241
Query: 948 GVPKIKE 954
G+ KI E
Sbjct: 242 GILKITE 248
|
Length = 300 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQ 775
K +++N V+ + + G + L+G +GAGKTT ++ G + G I I+ P +
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 776 ETFARIS-GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
AR+ GY Q ++TV+E+++ A L + +SK+++ +EE+++ + L
Sbjct: 72 R--ARLGIGYLPQEASIFRKLTVEENIL--AVLEIRG-LSKKEREEKLEELLEEFHITHL 126
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
+ + + LS +R+R+ IA L NP + +DEP +G+D A + + ++ D
Sbjct: 127 RKS----KASS-LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181
Query: 895 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKE 954
G V+ T H + D ++ G+V+ G ++ +++
Sbjct: 182 RGIGVLITDHNVR-ETLSITDRAYII-YEGKVLAEG----TPEEIAAN-------ELVRK 228
Query: 955 KY 956
Y
Sbjct: 229 VY 230
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 21/185 (11%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISGFPKKQETFARIS-GYCEQ 787
G + A++G SG+GK+TL++++ + G Y+ G KK F R GY Q
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQ 83
Query: 788 NDIHSPQVTVKESLIYSAFLRLA---KEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPG 843
N TV+E+L L K++SK++K +E ++ V L LK I L G
Sbjct: 84 NFALIENETVEENL------DLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSG 137
Query: 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 903
G EQ +R+ +A ++ P +I DEPT LD + V+ + D G+T++
Sbjct: 138 --G---EQ-QRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVT 191
Query: 904 HQPSI 908
H P +
Sbjct: 192 HDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 6e-15
Identities = 64/260 (24%), Positives = 115/260 (44%), Gaps = 36/260 (13%)
Query: 649 SREMAIRRMCSRSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPP 708
+R +A R + + R EA + S +V +D+
Sbjct: 3 TRAVA-EEAPRRLELSPIERKHQGISEA-------------KASIPGSMSTVA--IDLAG 46
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
K G DK ++N ++ G L+G +GAGK+T+ ++ G + G I +
Sbjct: 47 VSKSYG---DKA-VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITV 100
Query: 769 SGFP-KKQETFARIS-GYCEQNDIHSPQVTVKESLI-YSAFLRL-AKEVSKEDKIIFVEE 824
G P + AR G Q D + TV+E+L+ + + + +E+ +
Sbjct: 101 LGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEA-----VIPS 155
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+++ LES DA V LS ++RLT+A L+ +P ++ +DEPT+GLD A +
Sbjct: 156 LLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 210
Query: 885 VMRTVRNTVDTGRTVVCTIH 904
+ +R+ + G+T++ T H
Sbjct: 211 IWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 7e-15
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 39/222 (17%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
L+ V+ RPG + AL+G +GAGK+TLM +L+G G+I I G K F+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDG---KPVAFSS 76
Query: 781 ISG---------YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF-------VEE 824
+ E + + P ++V E++ L +E ++ +I E
Sbjct: 77 PRDALAAGIATVHQELSLV--PNLSVAENI------FLGREPTRRFGLIDRKAMRRRARE 128
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
++ + L+ D +VG LSI QR+ + IA L + ++ +DEPT+ L +
Sbjct: 129 LLARLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER 183
Query: 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
+ +R G ++ H+ ++FE D + +L+ G V
Sbjct: 184 LFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+T L+G +GKTTLL LAG+ + + GEI NG L++ Q+++ Y+ Q DVH
Sbjct: 35 LTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLDKNF-QRSTGYVEQQDVHSP 92
Query: 61 EMTVKETLDFSA--RCLGVGTR 80
+TV+E L FSA R L V R
Sbjct: 93 NLTVREALRFSALLRGLSVEQR 114
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 58/232 (25%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQN-D 56
L++GP SGK+TLL L G L GE+ +G L + + + + QN D
Sbjct: 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85
Query: 57 VHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116
TV+E + F LG+ PE EI+
Sbjct: 86 DQFFGPTVEEEVAFGLENLGL--------------------PEEEIEE------------ 113
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
+ L+++GL+ +D +SGGQK+RV ++ L +DE + GLD
Sbjct: 114 --RVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166
Query: 177 SSTTYQIVKCLQQIVHVTDATILMS-----LLQPAPETFDLFDDIILLSEGQ 223
+ ++++ L+++ TI++ LL +L D +I+L +G+
Sbjct: 167 PAGRRELLELLKKL-KAEGKTIIIVTHDLDLL------LELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 27/213 (12%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIRISGFPKKQETFARISGYCE 786
G + A++G SG+GK+TL+ ++ G R G I DI + E R+ G
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM-GVLF 91
Query: 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTG 846
Q +TV E++ + LR ++ + + +LV + K +VGL G
Sbjct: 92 QQGALFSSLTVFENVAF--PLREHTKLPES-------LIRELVLM---KLELVGLRGAAA 139
Query: 847 ------LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 899
LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R D G TV
Sbjct: 140 DLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTV 199
Query: 900 VCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932
+ H + D + +L G+VI G
Sbjct: 200 IMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTP 230
|
Length = 263 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 22/223 (9%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQET 777
L++V+ G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE-- 73
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKI-IFVEEVMDLVELESLKD 836
R G+ Q+ +TV +++ + ++ E E +I V E++ LV+L+ L D
Sbjct: 74 --RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD 131
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-T 895
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 132 R---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLLKRGG--QV-----IYSGP 931
T V H + E D ++++ +G QV +Y P
Sbjct: 187 HVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 27/224 (12%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP---KKQET 777
RLL+ V+ RPG + A++G +GAGK+TL+ L+G + G++ ++G P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
AR QN + TV+E + R +E ++++I + + +L
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIA--AQALAATDLS---- 126
Query: 837 AIVGLPG--VTGLSIEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRT 888
GL G LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 127 ---GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183
Query: 889 VRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLLKRGGQVIYSGP 931
R G V+ +H +++ + D ++LL + G+VI SG
Sbjct: 184 ARQLAREGGAVLAVLH--DLNLAAQYADRIVLLHQ-GRVIASGS 224
|
Length = 259 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 52/211 (24%), Positives = 79/211 (37%), Gaps = 61/211 (28%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ---E 776
+L V+ + PG A++G SG+GK+TL ++ G R T G +R+ G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPN 72
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL--ESL 834
GY Q+D EL S+
Sbjct: 73 ELGDHVGYLPQDD----------------------------------------ELFSGSI 92
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
+ I LS QR+RL +A L NP I+ +DEP S LD + + +
Sbjct: 93 AENI--------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144
Query: 895 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925
G T + H+P + D +L+L+ G
Sbjct: 145 AGATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 143 RGISGGQKKRVTTG-EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMS 201
RG+S Q+KR+T G E+ P+ LF+DE ++GLDS Y IV+ L+++ + IL +
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCT 164
Query: 202 LLQPAPETFDLFDDIILLSE-GQIVYQG 228
+ QP+ F+ FD ++LL G+ VY G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 34/201 (16%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
L++V+ R G L G SGAGKTTL+ +L G T G +RI+G R+
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGED-----VNRLR 70
Query: 783 GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF---------------VEEVMD 827
G + P + + +++ F RL + + + + V +
Sbjct: 71 G----RQL--PLLRRRIGVVFQDF-RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR 123
Query: 828 LVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
V LE DA P LS +++R+ IA +V +P ++ DEPT LD + ++
Sbjct: 124 QVGLEHKADA---FPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILD 178
Query: 888 TVRNTVDTGRTVVCTIHQPSI 908
++ G TV+ H S+
Sbjct: 179 LLKRLNKRGTTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 27/241 (11%)
Query: 705 DMPP--EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI 762
P E+K V + ++L +++ PG A++G +GAGKTTL+ +L G
Sbjct: 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-- 84
Query: 763 EGDIRISGFPKKQETF-----ARISGYC--EQNDIHSPQVTVKESLIYSAFL----RLAK 811
GD+ + G + RI G E ++ + TV++ ++ S F +
Sbjct: 85 SGDVTLLGRRFGKGETIFELRKRI-GLVSSELHERFRVRETVRD-VVLSGFFASIGIYQE 142
Query: 812 EVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871
+++ ED + +++L+ + L D G LS +++R+ IA LV +P ++ +D
Sbjct: 143 DLTAEDLAA-AQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILD 196
Query: 872 EPTSGLDARAAAIVMRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929
EP GLD A ++ + ++ H +I F LLLK G+V+
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQ 254
Query: 930 G 930
G
Sbjct: 255 G 255
|
Length = 257 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPKK 774
L +++ G + AL+G SG GK+TL+ +L G EG++ + G
Sbjct: 11 GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIY 70
Query: 775 QETFARIS-----GYCEQNDIHSPQV---TVKESLIYSAFLRLAKEVSKEDKIIFVEEVM 826
+ G Q P ++ +++ Y L K + D+ VEE +
Sbjct: 71 DLDVDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGIKLKEELDER--VEEAL 124
Query: 827 DLVEL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
L + +KD + L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 125 RKAALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 3e-14
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 50/238 (21%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQNDVHVG 60
+LGP SGK+TLL LAG L GE+ +G + P+ K AY+ Q+
Sbjct: 33 ILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
+TV + RY L R K+ E ++ ++ +E + +
Sbjct: 90 GLTV---YELVLL-----GRYPHLGLFGRPSKE----DEEIVEEALELLGLEHLADRPVD 137
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
+ +SGG+++RV + T L +DE ++ LD +
Sbjct: 138 E-----------------------LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLF----DDIILLSEGQIVYQGPRERVL 234
++++ L+ + T++M L +L D +ILL +G+IV QG E VL
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHDL-----NLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 3e-14
Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 15/190 (7%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK-KQE 776
DK+ ++N+++ G L+G +GAGK+T+ +L G + G I + G P +
Sbjct: 16 DKV-VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRA 72
Query: 777 TFARIS-GYCEQNDIHSPQVTVKESL-IYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
AR++ G Q D P+ TV+E+L ++ + ++ + + +++ LES
Sbjct: 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEA----VIPSLLEFARLESK 128
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
D V L LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ +
Sbjct: 129 ADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 183
Query: 895 TGRTVVCTIH 904
G+T++ T H
Sbjct: 184 RGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 35/209 (16%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARISGYCEQN 788
G AL+G SG GK+TL+ ++AG R T G++ + G P R GY Q
Sbjct: 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGEPVTGPGPDR--GYVFQQ 81
Query: 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTG-- 846
D P +TV +++ A + V K + E +L+EL VGL G
Sbjct: 82 DALLPWLTVLDNV---ALGLELQGVPKAEAR---ERAEELLEL-------VGLSGFENAY 128
Query: 847 ---LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCT 902
LS R+R+ +A L +P ++ +DEP S LDA + + + +TG+TV+
Sbjct: 129 PHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV 188
Query: 903 IHQPSIDIFEAF---DELLLL-KRGGQVI 927
H DI EA D +++L R G+++
Sbjct: 189 TH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 27/221 (12%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIRISGFPKKQE 776
R+LN+++ + G + AL+G +G GK+TL+ A R ++G GD IS +Q
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ- 73
Query: 777 TFARISGYCEQNDIH-SPQ-VTVKESLIY--SAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
AR Q H +P+ +TV+E + Y S +L L +S ED V + M+ +
Sbjct: 74 -LARRLALLPQ--HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR-VNQAMEQTRIN 129
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
L D + T LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 893 VDTGRTVVCTIHQPSIDIFEA---FDELLLLKRGGQVIYSG 930
G+TVV +H D+ +A D L++L G V+ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLA-NGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 26/207 (12%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGF-PKKQ--ETFARISGYCEQ 787
G + +G +GAGKTT + +L+G + T G++R++G P K+ + RI Q
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKFLRRIGVVFGQ 102
Query: 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF---VEEVMDLVELESLKDAIVGLPGV 844
+ V +S L + F ++E+ +L++LE L D P V
Sbjct: 103 KTQLWWDLPVIDSF------YLLAAIYDLPPARFKKRLDELSELLDLEELLDT----P-V 151
Query: 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTI 903
LS+ QR R IA L+ P I+F+DEPT GLD A + ++ + G TV+ T
Sbjct: 152 RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS 211
Query: 904 HQPSIDIFEAFDELLLLKRGGQVIYSG 930
H DI EA +L+ G+++Y G
Sbjct: 212 HYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 67/252 (26%), Positives = 114/252 (45%), Gaps = 44/252 (17%)
Query: 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISG 770
V+ + LN+++ + PG L L+G +GAGKTTLMDV+ G R G +GD ++
Sbjct: 13 VSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTK 72
Query: 771 FPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF--------- 821
P+ + AR G + P TV E+L L LA DK +F
Sbjct: 73 LPEHR--IARA-GIGRK--FQKP--TVFENLTVRENLELA---LNRDKSVFASLFARLRA 122
Query: 822 -----VEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
++E++ + L +D + L LS Q++ L I + L +P ++ +DEP +G
Sbjct: 123 EERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAG 177
Query: 877 L-DA--RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933
+ DA A +++++ +++ H + + + + G V+ G L
Sbjct: 178 MTDAETEKTAELLKSLAGK----HSILVVEH--DMGFVREIADKVTVLHEGSVLAEGSLD 231
Query: 934 --RNSHKVIEYY 943
+N KVIE Y
Sbjct: 232 EVQNDPKVIEVY 243
|
Length = 249 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 5e-14
Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 26/210 (12%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGF-P-KKQETFARISGYCEQ 787
G + +G +GAGK+T + +L G T G + R++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGL--- 101
Query: 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKII----FVEEVMDLVELESLKDAIVGLPG 843
+ K L + + EV K I F E + L E+ L + + P
Sbjct: 102 ------VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDL-EGFLKWP- 153
Query: 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCT 902
V LS+ QR R +A L+ P ++F+DEPT GLD A A + ++ + TV+ T
Sbjct: 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT 213
Query: 903 IHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932
H DI D +LL+ + GQ+++ G L
Sbjct: 214 THIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 6e-14
Identities = 81/313 (25%), Positives = 129/313 (41%), Gaps = 41/313 (13%)
Query: 714 GVAEDKLRL-------LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG-----RKTGGY 761
G+ D LR+ L++++ G L AL+G SG GKTTL+ +AG TG
Sbjct: 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI 64
Query: 762 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF 821
D ++ P + A + QN P + V++++ AF A+++ K D
Sbjct: 65 AIADRDLTHAPPHKRGLALLF----QNYALFPHLKVEDNV---AFGLRAQKMPKAD---I 114
Query: 822 VEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881
E V D ++L L DA LP LS ++R+ IA + P ++ +DEP S LDA
Sbjct: 115 AERVADALKLVGLGDAAAHLPA--QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI 172
Query: 882 AAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLLKRGG-------QVIYSGPL 932
A + + + T++C H D D+ ++K G Q +Y P
Sbjct: 173 RANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQALYDAPA 231
Query: 933 GRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNK 992
E+ A +P I A +++VS A + D + C R +
Sbjct: 232 DGF---AAEFLGAANILPAIALGITEAPGLVDVSCGGAVIFAFGDGRHDGRDKLACIRPE 288
Query: 993 ALVNELSTPPRGA 1005
L+ PR A
Sbjct: 289 ----HLALTPRPA 297
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 20/204 (9%)
Query: 714 GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI----- 768
G + ++L ++ PG + L G SG+GKTTL+ ++ G ++ EG +++
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQEL 69
Query: 769 SGFPKKQETFARIS-GYCEQ--NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEV 825
G +K+ R + GY Q N + +T ++++ + L L +S ++ +
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAM 125
Query: 826 MDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
++ V L D + P LS Q++R+ IA LV P ++ DEPT+ LD+++ V
Sbjct: 126 LEAVGLG---DHLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDV 180
Query: 886 MRTVRNTV-DTGRTVVCTIHQPSI 908
+ ++ + G T++ H I
Sbjct: 181 VELMQKLAREQGCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 16/202 (7%)
Query: 737 ALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISGFPKKQETFARISGYCEQNDIHS 792
L+G SG+GK+TL + G + T G +G + + ++ + Q+ + S
Sbjct: 35 GLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSS 94
Query: 793 --PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ESLKDAIVGLPGVTGLSI 849
P++T+ E I K KE + V ++ V L E + + P LS
Sbjct: 95 LNPRMTIGEQ-IAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNR---YPH--ELSG 148
Query: 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 908
QR+R+ IA L NP ++ DEPTS LD A ++ ++ + G T++ H +
Sbjct: 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV 208
Query: 909 DIFEAFDELLLLKRGGQVIYSG 930
A D + ++ G+++ G
Sbjct: 209 VAKIA-DRVAVMY-AGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 24/216 (11%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ 775
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + D R P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
GY Q D P +TV +++ A + SK + +E+++LV L +
Sbjct: 74 ------IGYVFQEDALLPWLTVLDNV---ALGLELRGKSKAEARERAKELLELVGLAGFE 124
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 894
D P LS R+R+ IA L P ++ +DEP LDA + + +
Sbjct: 125 DK---YPHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEE 179
Query: 895 TGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVI 927
T +TV+ H D+ EA D +++L I
Sbjct: 180 TRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 61/235 (25%), Positives = 95/235 (40%), Gaps = 48/235 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGY---RLNEFVPQKTSAYISQNDVHVG 60
LLG +GKTTLL +A L D G++T +G R FV +K + ++
Sbjct: 33 LLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY-A 88
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
+T +E L + AR L+ L+R+E +A I K
Sbjct: 89 RLTARENLKYFAR----------LNGLSRKEI------KARIAELSKR------------ 120
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
L L D VG S G K++V +V L +DE ++GLD T
Sbjct: 121 ------LQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTR 169
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+ ++Q+ + A I S E L D +I+L +G++V +G E +
Sbjct: 170 RKFHDFIKQLKNEGRAVIFSS--HIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 18/201 (8%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDI 766
+ + + L ++ G + G +G GKTTL+ +LAG R G + +
Sbjct: 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG 61
Query: 767 RISGFPKKQETFARISGYCEQNDIHSPQVTVKESL-IYSAFLRLAKEVSKEDKIIFVEEV 825
++++ R Y P+++ E+L ++A A+ +E+
Sbjct: 62 TAL--AEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT--------IEDA 111
Query: 826 MDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
+ V L +D LS Q++RL +A ++ + +DEPT+ LD A++
Sbjct: 112 LAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL 166
Query: 886 MRTVRNTVDTGRTVVCTIHQP 906
+R + G V+ T HQ
Sbjct: 167 AGLLRAHLARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRI 768
G + LN V+ G ++G SG+GK+TL +LAG + + G I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 769 SG--FPKKQET--FARISGYCEQNDIHS--PQVTVKESLIYSAFLRLAKEVSKEDKIIFV 822
G K+ F R Q+ S P+ TV L S LR + +I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQRI--- 121
Query: 823 EEVMDLVEL--ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879
E++D V L L L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 17/201 (8%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDI 766
E + + L ++++ G + G +GAGKTTL+ +LAG R G +
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YW 61
Query: 767 RISGFPKKQETFARISGYCEQNDIHSPQVTVKESL-IYSAFLRLAKEVSKEDKIIFVEEV 825
+ +E++ + Y ++T E+L + F + + E
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAAT-------IWEA 114
Query: 826 MDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
+ V L L+D LP V LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 115 LAQVGLAGLED----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169
Query: 886 MRTVRNTVDTGRTVVCTIHQP 906
+ G V+ T HQP
Sbjct: 170 TALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 3e-13
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPKKQET 777
R++ +V+ G + L+G +GAGKTT ++ G R G I D IS P
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
I GY Q +++V ++L+ A L++ ++S E + E+M+ +E L+D+
Sbjct: 77 RRGI-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 897
+ LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G
Sbjct: 134 MG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 898 TVVCTIH--QPSIDIFE 912
V+ T H + ++ + E
Sbjct: 189 GVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-13
Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 23/220 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISGFPKKQ-E 776
L++V+ G + ++G SGAGK+TL+ ++ R T G +++G ++ + +
Sbjct: 21 ALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ-DLTALSEAELR 79
Query: 777 TFARISGYCEQ--NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
+ G Q N + S TV E++ + L LA V K + V E+++LV L
Sbjct: 80 QLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELAG-VPKAEIKQRVAELLELVGLSDK 134
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV 893
D P LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 135 ADR---YPA--QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189
Query: 894 DTGRTVVCTIHQPSIDIFEAF-DELLLLKRGGQVIYSGPL 932
+ G T+V H+ +++ + D + +L + G+++ G +
Sbjct: 190 ELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLVEEGTV 226
|
Length = 339 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 30/203 (14%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFP--- 772
D +L+ ++ +PG + ++G SG+GK+TL ++ Y+ G + + G
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 773 KKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLR----LAKEVSKEDKIIFVEEVMD- 827
R G Q E+++++ +R LA +++I ++
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIRDNIALADPGMSMERVIEAAKLAGA 117
Query: 828 ---LVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+ EL D IVG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 118 HDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 885 VMRTVRNTVDTGRTVVCTIHQPS 907
+MR + + GRTV+ H+ S
Sbjct: 177 IMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-12
Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 31/202 (15%)
Query: 699 SVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--R 756
S Y ++E+G ++ +++V+ R G L+G SG+GK+TL +LAG
Sbjct: 287 SKRYGSRKGLFVRERGE----VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342
Query: 757 KTGGYIE---GDIRISGFPKKQETFARISGYCEQNDIHS--PQVTVKESLIYSAFLRLAK 811
+ G I D+ ++G + R Q+ S P++TV + L LR+
Sbjct: 343 PSSGSIIFDGQDLDLTG--GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHG 398
Query: 812 EVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTG------LSIEQRKRLTIAVELVANP 865
S ++ V E+++LV GLP LS QR+R+ IA L P
Sbjct: 399 GGSGAERRARVAELLELV----------GLPPEFLDRYPHELSGGQRQRVAIARALALEP 448
Query: 866 SIIFMDEPTSGLDARAAAIVMR 887
++ +DEP S LD A V+
Sbjct: 449 KLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-12
Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 18/213 (8%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK-QETFA 779
+ L++++ R G + ALMG +GAGK+TL+ +L+G G I I G + T A
Sbjct: 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTA 75
Query: 780 RI-SG----YCEQNDIH-SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
+ +G Y E +H P++TV E+L V++ E +LE
Sbjct: 76 ALAAGVAIIYQE---LHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEARE-----QLEH 127
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
L I + LSI QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 128 LGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR 187
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
GR ++ H+ +IF D + + K G V
Sbjct: 188 AEGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 33/225 (14%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIRISGFPKKQE- 776
+ +++V G L+G SG+GKTT + + IE G+I I G
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLD 69
Query: 777 --TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-- 832
R GY Q P +TV E++ A + KE +E++DLV L+
Sbjct: 70 PVELRRKIGYVIQQIGLFPHLTVAENI---ATVPKLLGWDKERIKKRADELLDLVGLDPS 126
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTV 889
D P LS Q++R+ +A L A+P I+ MDEP LD R ++ +
Sbjct: 127 EYADR---YP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL 181
Query: 890 RNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGP 931
+ G+T+V H DI EA D + ++ G V Y P
Sbjct: 182 QKE--LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-12
Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 22/202 (10%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDI 766
E E D L + ++ G + G +G+GKTTL+ +LAG G +
Sbjct: 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV 57
Query: 767 RISGFPKKQE--TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEE 824
++G P + + AR Y ++V E+L + + S E VEE
Sbjct: 58 LLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF-----WHADHSDEQ----VEE 108
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+ V L +D V LS Q++R+ +A L++ + +DEPT+ LD A
Sbjct: 109 ALARVGLNGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
Query: 885 VMRTVRNTVDTGRTVVCTIHQP 906
+ G VV T HQ
Sbjct: 164 FAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 60/251 (23%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRD---LKVRGEITYNGYRLNEFVPQKTSAYISQN-D 56
LL+GP SGK+TLL L G L + V G T + L E + + QN D
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR--QKVGLVFQNPD 89
Query: 57 VHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116
+ TV++ + F LG+ P EI+
Sbjct: 90 DQLFGPTVEDEVAFGLENLGL--------------------PREEIEE------------ 117
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT-TGEMIVGPTKTLFMDEISTGL 175
L+++GL+ D + SGGQK+RV G + +GP + L +DE + GL
Sbjct: 118 --RVAEALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMGP-EILLLDEPTAGL 169
Query: 176 DSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL------FDDIILLSEGQIVYQGP 229
D ++++ L+++ TI++ T DL D +++L +G+I+ G
Sbjct: 170 DPKGRRELLELLKKLKEEGGKTIIIV-------THDLELVLEYADRVVVLDDGKILADGD 222
Query: 230 RERVLEFFESC 240
+ E
Sbjct: 223 PAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 69/253 (27%), Positives = 119/253 (47%), Gaps = 26/253 (10%)
Query: 681 APKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMG 740
+ M LP +S ++V +PP K+ L ++ + + G A++G
Sbjct: 303 SRDPAMPLPEPEGHLSVENVTI---VPPGGKK--------PTLRGISFSLQAGEALAIIG 351
Query: 741 VSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTV 797
SG+GK+TL ++ G G +R+ G KQ ETF + GY Q D+ TV
Sbjct: 352 PSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELFPGTV 408
Query: 798 KESLIYSAFLRLA--KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRL 855
E++ + F A +++ + K+ V E+ ++ L D ++G PG LS QR+R+
Sbjct: 409 AENI--ARFGENADPEKIIEAAKLAGVHEL--ILRLPDGYDTVIG-PGGATLSGGQRQRI 463
Query: 856 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 915
+A L +P ++ +DEP S LD + ++ G TVV H+PS + D
Sbjct: 464 ALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVD 521
Query: 916 ELLLLKRGGQVIY 928
++L+L+ G +
Sbjct: 522 KILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-12
Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 41/217 (18%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARISG---YC 785
+PG AL+G SG+GK+T+ ++AG + G +I G P+++ ++
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPREVLANSVAMV 558
Query: 786 EQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGV- 844
+Q DI + TV+++L + D I +++ + ++ D I PG
Sbjct: 559 DQ-DIFLFEGTVRDNL------------TLWDPTIPDADLVRACKDAAIHDVITSRPGGY 605
Query: 845 --------TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
LS QR+RL IA LV NPSI+ +DE TS LD I+ +R
Sbjct: 606 DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----- 660
Query: 897 RTVVCTI--HQPSIDIFEAFDELLLLKRGGQVIYSGP 931
R C I H+ S I + DE+++L+R G+V+ G
Sbjct: 661 RGCTCIIVAHRLST-IRDC-DEIIVLER-GKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 36/258 (13%)
Query: 696 SFDSVYYYVDMPPEMKEQGVA-----------------EDKLRLLNEVTSAFRPGVLAAL 738
+ + ++ +D PE+++ K +L +++ + PG A+
Sbjct: 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAI 360
Query: 739 MGVSGAGKTTLMDVLAGRKTGGYIE---GDIRISGFPKKQETFA---RISGYCEQNDIHS 792
+G SG+GK+TL+ +L + G+I I G + + + G Q D
Sbjct: 361 VGPSGSGKSTLIKLLLR-----LYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ-DPLL 414
Query: 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852
T++E++ +E+ + K+ E + L D IVG GV LS QR
Sbjct: 415 FSGTIRENIALGRPDATDEEIEEALKLANAHEF--IANLPDGYDTIVGERGVN-LSGGQR 471
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 912
+RL IA L+ NP I+ +DE TS LD A++ ++ + GRT + H+ S +
Sbjct: 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLS--TIK 528
Query: 913 AFDELLLLKRGGQVIYSG 930
D +++L G+++ G
Sbjct: 529 NADRIIVLDN-GRIVERG 545
|
Length = 567 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
L +V+ G L ++G SG GKTTL++++AG T G I+++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
G QN+ P + V +++ + L+L + K + +++ LV LE + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFG--LQLRG-IEKAQRREIAHQMLALVGLEGAEHKYI-- 130
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG 896
LS R+R+ IA L P ++ +DEP LD A+ ++ + +TG
Sbjct: 131 ---WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD----ALTREQMQELLLDLWQETG 183
Query: 897 RTVVCTIHQPSIDIFEAF---DELLLLKRG-GQVIYSGPLG 933
+ V+ H DI EA L++L G G+V+ PL
Sbjct: 184 KQVLLITH----DIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 51/255 (20%)
Query: 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGF 771
V+ D + LN+++ PG L ++G +GAGKTT+MDV+ G R G + G ++G
Sbjct: 10 VSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL 69
Query: 772 PKKQETFARISGYCE--QNDIHSPQVTVKESLIYSA----------FLRLAKEVSKEDKI 819
P+ Q AR +G Q +TV E+L + F RL+ E
Sbjct: 70 PEHQ--IAR-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR--- 123
Query: 820 IFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879
+EEV++ + L D + GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 124 --IEEVLETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM-- 174
Query: 880 RAAAIVMRTVRNTVDTG---------RTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
T T T +VV H ++ + + + + G V+ G
Sbjct: 175 --------TDEETEKTAELLKSLAGKHSVVVVEH--DMEFVRSIADKVTVLHQGSVLAEG 224
Query: 931 PLG--RNSHKVIEYY 943
L + +VIE Y
Sbjct: 225 SLDQVQADPRVIEVY 239
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 17/191 (8%)
Query: 737 ALMGVSGAGKTTLMDVLAG--RKTGGYI--EGDIRISGFPKKQETFARISGYCEQNDIHS 792
++G +G+GK+ L++ +AG + G I G I+ P ++ Y QN
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGK-DITNLPPEKRDI----SYVPQNYALF 83
Query: 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852
P +TV +++ Y R + E K++ + E++ + L + K LS ++
Sbjct: 84 PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK--------PETLSGGEQ 135
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 912
+R+ IA LV NP I+ +DEP S LD R + ++ V + + +
Sbjct: 136 QRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWA 195
Query: 913 AFDELLLLKRG 923
D++ ++ G
Sbjct: 196 LADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 4e-12
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 33/228 (14%)
Query: 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ 775
A D +L+ + +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 466 APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAI 523
Query: 776 ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
R G V ++E++++S +R ++ + E V+ +L
Sbjct: 524 ADPAWLRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLA 570
Query: 833 SLKDAIVGLP----------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 882
D I LP G LS QR+R+ IA LV NP I+ DE TS LD +
Sbjct: 571 GAHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 883 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
A++MR +R + GRTV+ H+ + A D +++L++ GQ+ SG
Sbjct: 630 ALIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEK-GQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-12
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 18/133 (13%)
Query: 747 TTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS----GYCEQNDIHSPQVTVKESLI 802
+TL+ ++ G G I + G + ++ G Q+ P++TV+E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 803 YSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELV 862
+ + A EE ++ V L D V LS Q++R+ IA L+
Sbjct: 59 FGLRDKEADA--------RAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 863 ANPSIIFMDEPTS 875
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 29/214 (13%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
L ++ G L ++G SG GKTTL++++AG Y G I + G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 783 GYCEQNDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
G QN+ P V++++ AF L+LA V K ++ +++ V LE
Sbjct: 73 GVVFQNEGLLPWRNVQDNV---AFGLQLAG-VEKMQRLEIAHQMLKKVGLEG-----AEK 123
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGR 897
+ LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGK 180
Query: 898 TVVCTIHQPSIDIFEAF---DELLLLKRG-GQVI 927
V+ H DI EA EL+LL G G+V+
Sbjct: 181 QVLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 5e-12
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARISGYCEQND 789
G L G +G+GKTTL+ ++AG G I+ D P E + +N
Sbjct: 27 AGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG---HRNA 83
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849
+ P +TV E+L + A +E+ + ++ V L + LP LS
Sbjct: 84 MK-PALTVAENLEFWAAFLGGEELD-------IAAALEAVGL----APLAHLPFGY-LSA 130
Query: 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 909
Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G V+ H P +
Sbjct: 131 GQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LG 189
Query: 910 IFEA 913
+ A
Sbjct: 190 LPGA 193
|
Length = 207 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 5e-12
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 31/224 (13%)
Query: 725 EVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIRISGF-------PKKQ 775
+V+ PG + ++G SG+GKTTL+ ++GR G + +R ++
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 776 ETFARIS-GYCEQN--DIHSPQVT----VKESLIYSAFLRLAKEVSKEDKIIFVEEVMD- 827
R G+ QN D QV+ + E L +A I E D
Sbjct: 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL-------MAIGARHYGNI--RAEAQDW 134
Query: 828 LVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
L E+E D I LP S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 135 LEEVEIDLDRIDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 888 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+R V + G VV H ++ A D L+++K+ GQV+ SG
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQ-GQVVESG 234
|
Length = 258 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-12
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 36/213 (16%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARIS-----GYC 785
G + AL+G +GAGK+TL G + T G++ I G P K + + + G
Sbjct: 28 GEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKYDKKSLLEVRKTVGIV 83
Query: 786 EQN---DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842
QN + +P TV+E + AF L +SKE EV V+ E+LK VG+
Sbjct: 84 FQNPDDQLFAP--TVEEDV---AFGPLNLGLSKE-------EVEKRVK-EALKA--VGME 128
Query: 843 GVTG-----LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 897
G LS Q+KR+ IA L P II +DEPTSGLD A+ +M+ + + G
Sbjct: 129 GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGI 188
Query: 898 TVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
T++ + H +D+ + + + + G++I G
Sbjct: 189 TIIISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 6e-12
Identities = 65/238 (27%), Positives = 98/238 (41%), Gaps = 48/238 (20%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG------------------GYI 762
+ L+ V G + AL+G SG+GK+TL+ L+G TG G +
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77
Query: 763 EGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAF---------LRLAKEV 813
DIR S + T GY Q +++V E+++ A
Sbjct: 78 ARDIRKS----RANT-----GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTRE 128
Query: 814 SKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873
K+ L L + V+ LS Q++R+ IA L+ +I DEP
Sbjct: 129 QKQRA---------LQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEP 179
Query: 874 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ LD +A IVM T+R+ G TVV T+HQ +D + E ++ R G V Y G
Sbjct: 180 IASLDPESARIVMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-12
Identities = 72/258 (27%), Positives = 116/258 (44%), Gaps = 31/258 (12%)
Query: 681 APKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMG 740
A M LP A+S + + PP K+ +L ++ A + G ++G
Sbjct: 321 AAAERMPLPAPQGALSVERLTA---APPGQKK--------PILKGISFALQAGEALGIIG 369
Query: 741 VSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTV 797
SG+GK+TL +L G G +R+ G +Q E R GY Q D+ T+
Sbjct: 370 PSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTI 426
Query: 798 KESLIYSAFLRLAKEVSKEDKII---FVEEVMDLV-ELESLKDAIVGLPGVTGLSIEQRK 853
E++ R +E E K+I + V +L+ L D +G G LS QR+
Sbjct: 427 AENIA-----RFGEEADPE-KVIEAARLAGVHELILRLPQGYDTRIG-EGGATLSGGQRQ 479
Query: 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 913
R+ +A L +P ++ +DEP S LD+ A + + G TVV H+PS +
Sbjct: 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALAS 537
Query: 914 FDELLLLKRGGQVIYSGP 931
D++L+L+ G++ GP
Sbjct: 538 VDKILVLQ-DGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-12
Identities = 54/162 (33%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
L+ V+ + G L+G SG GKTTL+ ++AG T G I I+ P
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP----PHK 71
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
R QN P +TV E++ AF LRL K + K + V E +DLV+LE +
Sbjct: 72 RPVNTVFQNYALFPHLTVFENI---AFGLRLKK-LPKAEIKERVAEALDLVQLEGYANRK 127
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 128 P-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 16/196 (8%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDV--LAGRKTGGYIE-GDIRISGFP--KKQ 775
+L+ + +PG + A++G SG+GKTTL+ L + G I GDI I +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 776 ETFARI----SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL 831
+ R G+ QN P TV E++I + K KE+ E++ V L
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI--VKGEPKEEATARARELLAKVGL 134
Query: 832 ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
+ + P LS Q++R+ IA L P +I DEPTS LD V+ T+R
Sbjct: 135 AGKETS---YP--RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189
Query: 892 TVDTGRTVVCTIHQPS 907
RT+V H+ S
Sbjct: 190 LAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 12/213 (5%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 776
D +L +++ G AL+G SG+GK+TL++++ + G I I G +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 777 TFA---RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
T A R G Q D+ TV E++ Y +EV + + E + EL
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIM--ELPE 126
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
D ++G GV LS QR+R+ IA L+ +P I+ +DE TS LD + +V + +
Sbjct: 127 GYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM 185
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
RT H+ S I A D +++L+ G V
Sbjct: 186 K-NRTTFVIAHRLST-IENA-DRIVVLEDGKIV 215
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 9e-12
Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 23/207 (11%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQN---D 789
G +AAL+GV+G+GK+TL L G G I I G P +Q + Y Q+ D
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 790 IHSPQVTVKESLI-----YSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGV 844
P V V++ ++ + +LR AK+ D+ I V + V++ + +G
Sbjct: 91 WSFP-VLVEDVVMMGRYGHMGWLRRAKK---RDRQI-VTAALARVDMVEFRHRQIG---- 141
Query: 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 904
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 -ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
Query: 905 QPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ E D +++K G V+ SGP
Sbjct: 201 NLG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 39/227 (17%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIRISGFPKKQET- 777
+N + G L+G SG+GKTT M + IE G+I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 778 --FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE--S 833
R GY Q P +TV+E++ + +L K KE +E++ LV L+
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI--ALVPKLLKW-PKEKIRERADELLALVGLDPAE 127
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT----- 888
D P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 128 FADR---YPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEE 177
Query: 889 -VRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGP 931
R + G+T+V H DI EAF D + ++K G V P
Sbjct: 178 FKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVGTP 220
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 13/203 (6%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA-RI 781
L++V G L AL+G SG+GK+TL+ ++AG + G IR++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
G+ Q+ +TV++++ + +R + + + VEE+++LV+LE L D
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR---Y 127
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 900
P LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 901 CTIHQPSIDIFEAFDELLLLKRG 923
H + E D ++++ G
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-11
Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 29/238 (12%)
Query: 706 MPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGD 765
++ + V +L+ V + R G L L+G +GAGKTTL+ + G T G
Sbjct: 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGT 59
Query: 766 IRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSK---------- 815
+ ++G + + S + PQ T SL + +R E+ +
Sbjct: 60 VLVAGDDVEALSARAAS----RRVASVPQDT---SLSFEFDVRQVVEMGRTPHRSRFDTW 112
Query: 816 -EDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874
E VE M+ + D VT LS +R+R+ +A L ++ +DEPT
Sbjct: 113 TETDRAAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPT 167
Query: 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLLKRGGQVIYSGP 931
+ LD + VR VD G+T V IH +D+ + DEL+LL G V +GP
Sbjct: 168 ASLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR-VRAAGP 222
|
Length = 402 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF-----PKKQET 777
L +V+ G L G SGAGK+TL+ ++ G + G I ++G ++
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR--GKILVNGHDLSRLKGREIP 75
Query: 778 FARIS-GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
F R G Q+ P TV E++ LR+ + +E + V ++++L LK
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIR----RRVSEVLDLVGLKH 129
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
LP LS +++R+ IA +V P+++ DEPT LD + +MR G
Sbjct: 130 KARALPSQ--LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187
Query: 897 RTVVCTIH 904
TV+ H
Sbjct: 188 TTVLMATH 195
|
Length = 223 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 1e-11
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 24/182 (13%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS------GY 784
RPG L+GV+GAGKTT +L G T GD ++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 785 CEQNDIHSPQVTVKESLIYSAFLR--LAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842
C Q D +T +E L A LR A+E+ K + + L D + G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEK-----VANWSIQSLGLSLYADRLAGT- 2070
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 902
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T
Sbjct: 2071 ----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT 2126
Query: 903 IH 904
H
Sbjct: 2127 SH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 21/193 (10%)
Query: 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGF 771
K ++L V+ G + AL+G +GAGKTTL+ + G G I I+G
Sbjct: 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL 67
Query: 772 PKKQETFARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDL 828
P R GY + P++TV+E+L+ A+ R + K +E V +L
Sbjct: 68 P----PHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR-RRAKRKAR----LERVYEL 118
Query: 829 V-ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
L+ + + G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 119 FPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173
Query: 888 TVRNTVDTGRTVV 900
+R D G T++
Sbjct: 174 AIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-11
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
++V+ + + G + AL+G +GAGK+TLM +L G + G+IR+ G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE------VR 69
Query: 781 ISGYCEQND--------IHS-----PQVTVKESLIYSAFLRLAKEVSKEDKIIF------ 821
I D +H P +TV E++I L E SK I
Sbjct: 70 IKS---PRDAIRLGIGMVHQHFMLVPTLTVAENII------LGLEPSKGGLIDRRQARAR 120
Query: 822 VEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881
++E+ + L DA V LS+ +++R+ I L ++ +DEPT+ L +
Sbjct: 121 IKELSERYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 882 AAIVMRTVRNTVDTGRTVV 900
A + +R G+T++
Sbjct: 176 ADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 35/224 (15%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIRISGFPK 773
+L +V+ G A++G SG+GK+T++ DV +G I+G DIR
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI---LIDGQDIR----EV 68
Query: 774 KQETFARISGYCEQNDIHSPQVTV--KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE- 830
++ R G PQ TV +++ Y+ +R + + ++++I + + +
Sbjct: 69 TLDSLRRAIGVV-------PQDTVLFNDTIGYN--IRYGRPDATDEEVIEAAKAAQIHDK 119
Query: 831 LESLKDA---IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
+ D IVG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 120 IMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 888 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+R V GRT + H+ S I A D++++LK G+++ G
Sbjct: 179 ALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLK-DGRIVERGT 218
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 51/230 (22%)
Query: 3 LLLGPPSSGKTTLLLALAGKLNR----DLKVRGEITYNGYRLNEFVPQKTSAYISQNDVH 58
+L GP SGKTTLL L G L LKV G+ Y ++ YI Q
Sbjct: 35 ILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNL 93
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
+G +T ++ + + EL L+ +E +A AM
Sbjct: 94 LGFLTARQNVQMAL---------ELQPNLSYQEARE------------RARAM------- 125
Query: 119 ITDYTLKILGLDICKDTIVGDEMN---RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 175
L+ +GL GD ++ +SGGQK+RV +V K + DE + L
Sbjct: 126 -----LEAVGL--------GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAAL 172
Query: 176 DSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV 225
DS + +V+ +Q++ TIL+ + D+ D I+ + +G+++
Sbjct: 173 DSKSGRDVVELMQKLAREQGCTILI--VTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 4e-11
Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 55/230 (23%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIRISGFPKKQ-- 775
LL++V+ RPG + A++G +GAGK+TL+ L+ G + G++R++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWS 70
Query: 776 -ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEV-----------SKEDKIIFVE 823
AR PQ + SL +F +EV ED + V
Sbjct: 71 PAELARRRAVL-------PQHS---SL---SFPFTVEEVVAMGRAPHGLSRAEDDAL-VA 116
Query: 824 EVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELV------ANPSIIFMDEPTSGL 877
+ V+L L LS +++R+ +A L P + +DEPTS L
Sbjct: 117 AALAQVDLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSAL 171
Query: 878 DARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRG 923
D V+R R + G V+ +H D+ A D ++LL +G
Sbjct: 172 DLAHQHHVLRLARQLAHERGLAVIVVLH----DLNLAARYADRIVLLHQG 217
|
Length = 258 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-11
Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 27/218 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP----KKQETF 778
L G A++G SG+GK+TL+ +LAG +G I ++G +Q
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALR 411
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-KDA 837
IS ++ + S T++++L RLA + ++++ + V LE L + A
Sbjct: 412 ETISVLTQRVHLFSG--TLRDNL------RLANPDASDEELW---AALQQVGLEKLLESA 460
Query: 838 IVGLP-----GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
GL G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 461 PDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH 520
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ G+T++ H+ E D +++L G++I G
Sbjct: 521 AE-GKTLLMVTHRLR--GLERMDRIIVL-DNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 18/203 (8%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG---FPK 773
EDK +L V + G + A+MG +G+GK+TL +AG + G I G
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69
Query: 774 KQETFARISGYCE-QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
+ + AR + Q P V+ E FLR A + + +++D ++L
Sbjct: 70 EPDERARAGLFLAFQYPEEIPGVSNLE------FLRSALNARRSARGEEPLDLLDFLKLL 123
Query: 833 SLKDAIVGLPGV-------TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
K A++G+ G S ++KR I + P + +DE SGLD A IV
Sbjct: 124 KAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIV 183
Query: 886 MRTVRNTVDTGRTVVCTIHQPSI 908
+ + R+ + H +
Sbjct: 184 AEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 4e-11
Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 29/237 (12%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQ 775
K++ L V+ G + AL+G +GAGKTTL+ + G R G I I+G P
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP--- 71
Query: 776 ETFARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV-EL 831
R Y + P++TV+E+L+ A+ R KE + D +EEV +L L
Sbjct: 72 -PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERD----LEEVYELFPRL 126
Query: 832 ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
+ ++ G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 127 KERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 892 TVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGPLG--RNSHKVIEYY 943
G + + Q + A D +L+ G+++ SG V E Y
Sbjct: 182 LRKEGGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGTAAELLADPDVREAY 234
|
Length = 237 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 54/235 (22%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGY-----RLNEFVP--QKTSAYISQ 54
T + G +GK+TLL +AG D G I NG R +P Q+ + Q
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82
Query: 55 NDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGV 114
+ V+E L F + RE I + +DL
Sbjct: 83 QYALFPHLNVRENLAFGLK------------RKRNREDR--ISVDELLDLL--------- 119
Query: 115 ESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 174
GLD + +SGG+K+RV + + L +DE +
Sbjct: 120 -------------GLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFSA 161
Query: 175 LDSSTTYQIVKCLQQIV-HVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
LD + Q++ L+QI ++ I ++ E L D I+++ +G++ Y G
Sbjct: 162 LDRALRLQLLPELKQIKKNLNIPVIFVT--HDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 21/204 (10%)
Query: 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 770
K G K+ L +V+ + G + ++G SGAGK+TL+ + G + G + + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 771 F------PKKQETFARISGYCEQ--NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFV 822
K+ R G Q N + S TV E++ L +A V K + V
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALP--LEIAG-VPKAEIEERV 121
Query: 823 EEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 882
E+++LV LE DA P LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 122 LELLELVGLEDKADA---YPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 883 AIVMRTVRNT-VDTGRTVVCTIHQ 905
++ +R+ + G T+V H+
Sbjct: 177 QSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 25/237 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETF 778
LL+ ++ F G + L+G +G+GK+TL+ +L GR EG+I + P + + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 779 ARISGYCEQNDIHSPQVTVKESLI------YSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
AR Y Q + +TV+E + + A R ++ VEE + LV L+
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-----VEEAISLVGLK 138
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 891
L +V LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 892 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG-PLGRNSHKVIEYYEAIP 947
+ + G TV+ +H I++ + + L+ RGG++I G P + +E IP
Sbjct: 194 SQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGTPAELMRGETLEQIYGIP 248
|
Length = 265 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-11
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 35/184 (19%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
LL V+ PG L+G +GAGK+TL+ +LAG G++ K
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEV----TRPKGLRV-- 68
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKE----------------DKIIFVEE 824
GY Q P+ TV + +I F L +E+ E ++ + E
Sbjct: 69 --GYLSQEPPLDPEKTVLDYVI-EGFGEL-RELLAELEEAYALLADPDDELLAELEALLE 124
Query: 825 VMDLVELESLKDAI---VGLPG----VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877
+D LE+ + +G P V+ LS R+R+ +A L+ P ++ +DEPT+ L
Sbjct: 125 ELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHL 184
Query: 878 DARA 881
D +
Sbjct: 185 DLES 188
|
Length = 530 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-11
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 21/209 (10%)
Query: 732 PGV-LAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETF----ARISGY 784
PG + A+ G SG+GKTTL+ ++AG R G I + R F ++ F R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTL-FDSRKGIFLPPEKRRIGY 79
Query: 785 CEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGV 844
Q P ++V+ +L Y K ++ I E V++L+ + L + LPG
Sbjct: 80 VFQEARLFPHLSVRGNLRYGM-----KRARPSERRISFERVIELLGIGHL---LGRLPG- 130
Query: 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTI 903
LS +++R+ I L+++P ++ MDEP + LD R I+ R + G ++
Sbjct: 131 -RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS 189
Query: 904 HQPSIDIFEAFDELLLLKRGGQVIYSGPL 932
H S+ + +++ G+V +GP+
Sbjct: 190 H--SLQEVLRLADRVVVLEDGRVAAAGPI 216
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 724 NEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--GGYIEGDIRISGFPK-------K 774
+V+ PG + ++G SG+GK+TL+ LAGR G +R + +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 775 QETFARIS-GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
+ R G+ QN ++ V RL ++ I L E+E
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGE--RLMAIGARHYGNIRATAQDWLEEVEI 137
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
I LP S ++RL IA LV P ++FMDEPT GLD A ++ +R V
Sbjct: 138 DPTRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 894 -DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
D G V+ H + A LL++++ G+V+ SG
Sbjct: 196 RDLGLAVIIVTHDLGVARLLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 55/246 (22%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKT------SAYISQ 54
L+GP +GK+TLL L G + G + +G +N+ + I Q
Sbjct: 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQ 85
Query: 55 NDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREK---DAGIFPEAEIDLFMKATAM 111
+ ++V E + L L RR G+FP+ E A+
Sbjct: 86 QFNLIERLSVLENV--------------LSGRLGRRSTWRSLFGLFPKEEKQR-----AL 126
Query: 112 EGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEI 171
+E + D + D++ SGGQ++RV ++ K + DE
Sbjct: 127 AALERVGLLDKAYQ-----------RADQL----SGGQQQRVAIARALMQQPKLILADEP 171
Query: 172 STGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL----FDDIILLSEGQIVYQ 227
LD +++ Q++ L++I T+++SL Q DL D I+ L +G+IV+
Sbjct: 172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQV-----DLAREYADRIVGLKDGRIVFD 226
Query: 228 GPRERV 233
GP +
Sbjct: 227 GPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 58/253 (22%), Positives = 110/253 (43%), Gaps = 42/253 (16%)
Query: 714 GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR--KTGGYIE-GDIRISG 770
G +K R LN ++ G ++G +GAGK+TL++ +AG T G I + ++
Sbjct: 14 GTPLEK-RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTK 72
Query: 771 FPKKQ--ETFARI-----SGYCEQNDIHSPQVTVKESLIYSAF------LRLAKEVSKED 817
+ AR+ +G P++T++E+L + L A +
Sbjct: 73 KSVAKRANLLARVFQDPLAGTA-------PELTIEENLALAESRGKKRGLSSALNERRRS 125
Query: 818 KIIFVEEVMDLVE-LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
F E + L LE+ +GL LS QR+ L++ + + P I+ +DE T+
Sbjct: 126 S--FRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 877 LDARAAAIVMR-TVRNTVDTGRTVVCTIH--QPSIDIFEAFDELLLLKRGGQVI--YSGP 931
LD + A VM T + + T + H + ++D + L++ G+++ +G
Sbjct: 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALD----YGNRLIMLHSGKIVLDVTGE 234
Query: 932 LGRNSHKVIEYYE 944
+ S V++ +
Sbjct: 235 -EKASLTVLDLIQ 246
|
Length = 263 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 14/191 (7%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQ 775
K +++N+V+ G + L+G +GAGKTT ++ G R G I D I+ P +
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK 75
Query: 776 ETFARIS-GYCEQNDIHSPQVTVKESLIYSAFLRL-AKEVSKEDKIIFVEEVMDLVELES 833
AR+ GY Q ++TV+++++ A L + K++ K ++ ++ +++ +
Sbjct: 76 R--ARLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHITH 131
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
L+D+ + LS +R+R+ IA L ANP I +DEP +G+D A + R +++
Sbjct: 132 LRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK 186
Query: 894 DTGRTVVCTIH 904
D G V+ T H
Sbjct: 187 DRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-10
Identities = 59/239 (24%), Positives = 92/239 (38%), Gaps = 47/239 (19%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS---AYISQNDV 57
++G SGK+TLL L G +G I +G LN+ Y+ Q+
Sbjct: 501 KVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
+++E + E + E A+ A F
Sbjct: 558 LFSG-SIRENIALGN----PEATDEEIIEAAQL---------AGAHEF------------ 591
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
I L + DT VG E +SGGQ++R+ ++ K L +DE ++ LD
Sbjct: 592 --------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDP 642
Query: 178 STTYQIVKCLQQI-VHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
T I++ L QI T I+++ T D II+L +G+IV QG E +L
Sbjct: 643 ETEAIILQNLLQILQGRT--VIIIA---HRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 770
K G E +L +L V + G AL+G SG+GK+TL+ +LAG G G++ + G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 771 FP-------KKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVE 823
P + + A+ G+ Q+ + P + E++ A LR E S++ +
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----N 125
Query: 824 EVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
L+E L + LP LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 24/206 (11%)
Query: 714 GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP- 772
G E +L +L V + G A++G SG+GK+TL+ VLAG G++R+ G P
Sbjct: 17 GQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPL 74
Query: 773 --KKQETFARIS----GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVM 826
++ A + G+ Q+ P +T E++ L L E S + +
Sbjct: 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALP--LELRGESSADSR----AGAK 128
Query: 827 DLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAA 882
L+E L + P LS +++R+ +A P ++F DEPT LD + A
Sbjct: 129 ALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 883 AIVMRTVRNTVDTGRTVVCTIHQPSI 908
++ R + G T+V H P +
Sbjct: 187 DLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 52/149 (34%), Positives = 76/149 (51%), Gaps = 21/149 (14%)
Query: 738 LMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISGFPKKQETFARISGYCEQNDIHSP 793
L+G SG GKTT + ++AG T G YI G ++ P K A + QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYI-GGRDVTDLPPKDRDIAMVF----QNYALYP 85
Query: 794 QVTVKESLIYSAF-LRLAKEVSKEDKIIF-VEEVMDLVELESLKDAIVGLPGVTGLSIEQ 851
+TV +++ AF L+L K +D+I V EV +L+++E L D LS Q
Sbjct: 86 HMTVYDNI---AFGLKLRK--VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQ 135
Query: 852 RKRLTIAVELVANPSIIFMDEPTSGLDAR 880
R+R+ + +V P + MDEP S LDA+
Sbjct: 136 RQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 28/230 (12%)
Query: 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 769
M+ VAE RL ++ R G + L+G +GAGK+TL+ +AG +G G I+ +
Sbjct: 4 MQLNDVAEST-RLG-PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFA 58
Query: 770 GFPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVM 826
G P + AR Y Q + V Y + K ++ + +V
Sbjct: 59 GQPLEAWSATELARHRAYLSQQQTPPFAMPVWH---YLTLHQPDKTRTEL-----LNDVA 110
Query: 827 DLVEL-ESLKDAIVGLPGVTGLSIEQRKRLT---IAVELVANPS--IIFMDEPTSGLDAR 880
+ L + L + L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA 166
Query: 881 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ + R + G +V + H + + A LLKR G+++ SG
Sbjct: 167 QQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 3e-10
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 46/237 (19%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP---QKTSAYISQNDVH 58
T L+G +GK+TLL L G L +GEI NG L + P +K +++SQN +
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNP-Y 405
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
+ T++E + LL+ +++ + A + +
Sbjct: 406 LFAGTIRENI--------------LLARPDASDEE------------IIAAL----DQAG 435
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
+ ++ K GLD T++G E G+SGGQ +R+ ++ P L +DE + LD+
Sbjct: 436 LLEFVPKPDGLD----TVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 179 TTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
T I++ LQ+ T+L+ + E D I++L G++V QG E + E
Sbjct: 491 TEQIILQALQE--LAKQKTVLVITHR--LEDAADADRIVVLDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 28/218 (12%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETF 778
R+L V+ + G + A++G SG+GK+TL+ +L G G++ +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 779 ARIS-------GYCEQNDIHS--PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
+ G+ Q H P T E++ + K+ KE K E +++
Sbjct: 75 NERAKLRNKKLGFIYQ--FHHLLPDFTALENVAMPLLIG--KKSVKEAK----ERAYEML 126
Query: 830 ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---M 886
E L+ I P LS +R+R+ IA LV PS++ DEPT LD A I+ M
Sbjct: 127 EKVGLEHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184
Query: 887 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924
+ ++T VV H ++ + D +L +K G
Sbjct: 185 LELNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 4e-10
Identities = 59/246 (23%), Positives = 99/246 (40%), Gaps = 55/246 (22%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP------QKTSAYISQ 54
M ++GP +GK+TLL +L G ++ GEI +NG ++ + ++ I Q
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88
Query: 55 NDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDA---GIFPEAEIDLFMKATAM 111
V ++V E + LL L G+F + + KA A+
Sbjct: 89 QFNLVPRLSVLENV--------------LLGRLGYTSTWRSLFGLFSKED-----KAQAL 129
Query: 112 EGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEI 171
+ +E I D + +SGGQ++RV +V K + DE
Sbjct: 130 DALERVGILDKAYQRAS---------------TLSGGQQQRVAIARALVQQPKIILADEP 174
Query: 172 STGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL----FDDIILLSEGQIVYQ 227
LD + +++ L+ I T++++L Q DL D II L G+IV+
Sbjct: 175 VASLDPESAKKVMDILKDINQEDGITVIVNLHQ-----VDLAKKYADRIIGLKAGRIVFD 229
Query: 228 GPRERV 233
GP +
Sbjct: 230 GPASEL 235
|
Length = 258 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 31/234 (13%)
Query: 715 VAEDKLRLLNEVTS-----AFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 769
+A D +R G + A++G SGAGK+TL++++AG +T G+I I+
Sbjct: 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILIN 59
Query: 770 GFPKKQETFAR--ISGYCEQNDIHSPQVTVKES--LIYSAFLRLAKEVSKEDKIIFVEEV 825
G A +S ++N++ + +TV ++ L S L+L E ++ VE
Sbjct: 60 GVDHTASPPAERPVSMLFQENNLFA-HLTVAQNIGLGLSPGLKLNAEQREK-----VEAA 113
Query: 826 MDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA 883
V L LPG LS QR+R+ +A LV I+ +DEP S LD RA
Sbjct: 114 AAQVGLAGFLKR---LPGE--LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE- 167
Query: 884 IVMRTVRNTV--DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRN 935
M + + + + T++ H P D D ++ L G++ G
Sbjct: 168 --MLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-10
Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 776
E++L LN ++ F + ++G SG+GK+TL+ G Y G I++ +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 777 -TFARISGYCEQNDIHSPQVTVKESLIYSAF--LRLAKEVSKEDKIIFVEEVMDLVELES 833
+ I + + + + F +L K+ ++D I+F + + + E+
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKD-IMFGPVALGVKKSEA 152
Query: 834 LKDAIVGLPGVT-----------GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 882
K A L + GLS Q++R+ IA L P I+ DEPT+GLD +
Sbjct: 153 KKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGE 212
Query: 883 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+M+ + + +TV H + E DE++++ + G+++ +G
Sbjct: 213 HEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDK-GKILKTG 258
|
Length = 320 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-10
Identities = 50/208 (24%), Positives = 103/208 (49%), Gaps = 36/208 (17%)
Query: 737 ALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFPKKQ---ETFARISGYCEQNDIH 791
AL+G SGAGKT+L++ L G ++ +G ++I+G ++ E++ + + QN
Sbjct: 380 ALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDPESWRKHLSWVGQNP-Q 433
Query: 792 SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP--------- 842
P T+++++ L + + E++ +E + + + LP
Sbjct: 434 LPHGTLRDNV------LLGNPDASD------EQLQQALENAWVSEFLPLLPQGLDTPIGD 481
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 902
GLS+ Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N +T +
Sbjct: 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMV 540
Query: 903 IHQPSIDIFEAFDELLLLKRGGQVIYSG 930
HQ ++ +D++ +++ GQ++ G
Sbjct: 541 THQ--LEDLAQWDQIWVMQD-GQIVQQG 565
|
Length = 588 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-10
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF----PKKQETFARIS-GYC 785
+ G + ++G SG+GK+TL+ + + G I I G KK R G
Sbjct: 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMV 81
Query: 786 EQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVT 845
Q P +TV E++ + K +SK + E+++ V L DA P
Sbjct: 82 FQQFNLFPHLTVLENITLA--PIKVKGMSKAEAEERALELLEKVGLADKADA---YPA-- 134
Query: 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 905
LS Q++R+ IA L NP ++ DEPTS LD V+ +++ + G T+V H+
Sbjct: 135 QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 6e-10
Identities = 54/238 (22%), Positives = 90/238 (37%), Gaps = 63/238 (26%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE------FVPQKTSAYISQN 55
++GP +GK+TLL A+ G L G I G L + +VPQ+ S
Sbjct: 28 LAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGYVPQRRSIDRDFP 84
Query: 56 DVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVE 115
++V++ + +G+ L L++ +K
Sbjct: 85 ------ISVRDVV-----LMGLYGHKGLFRRLSKADKAKV-------------------- 113
Query: 116 SSLITDYTLKILGLDICKDTIVGDEMNRGI---SGGQKKRVTTGEMIVGPTKTLFMDEIS 172
D L+ +GL + +R I SGGQ++RV +V L +DE
Sbjct: 114 -----DEALERVGL--------SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF 160
Query: 173 TGLDSSTTYQIVKCLQQIVHVTDATILMSL--LQPAPETFDLFDDIILLSEGQIVYQG 228
G+D T I + L++ + TIL+ L + FD ++LL +V G
Sbjct: 161 AGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 6e-10
Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
+N ++ + L+G +GAGK+TL+ ++ G R T G+I G P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
I E ++ +T +E+L L + ++EV+++V+L +
Sbjct: 72 IGSLIESPPLYE-NLTARENLKVHTTLLGLPDSR-------IDEVLNIVDLTNTGKKKAK 123
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
S+ ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 124 -----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 7e-10
Identities = 56/202 (27%), Positives = 88/202 (43%), Gaps = 31/202 (15%)
Query: 706 MPP--EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIE 763
M EMK ++ L+ V+ R G + +L G +GAGK+TLM VL+G G E
Sbjct: 2 MEYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE 61
Query: 764 GDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVE 823
G+I G + + I E+ I ++I+ L L KE+S + I
Sbjct: 62 GEIIFEGEELQ---ASNIRD-TERAGI---------AIIHQE-LALVKELSVLENIFLGN 107
Query: 824 E-----VMDLVE--------LESLKDAI-VGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869
E +MD L LK I P V L + Q++ + IA L ++
Sbjct: 108 EITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLI 166
Query: 870 MDEPTSGLDARAAAIVMRTVRN 891
+DEPT+ L A+++ +R+
Sbjct: 167 LDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 8e-10
Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPK-------KQETFARI 781
PG + ++G SG+GK+TL L G + G G++ + G ++ +
Sbjct: 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKR 92
Query: 782 SGYCEQNDIHS--PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
Q+ + S P +T+ + + + LRL + S+ + E+++ V L +
Sbjct: 93 IAMIFQDPMTSLNPVMTIGDQIREA--LRLHGKGSRAEARKRAVELLEQVGLPD-PERRD 149
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 898
P LS R+R+ IA+ L P ++ DEPT+ LD A ++ +++ + G
Sbjct: 150 RYPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMA 207
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
V+ H + + E D ++++ + G+++ +GP
Sbjct: 208 VLFITHDLGV-VAELADRVVVMYK-GEIVETGP 238
|
Length = 539 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 8e-10
Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 72/250 (28%)
Query: 10 SGKTTLLLALAGKLNRDL--KVRGEITYNG---YRLNEFVPQK----TSAYISQ------ 54
SGK+ L A+ G L + V GEI ++G L+E +K A I Q
Sbjct: 42 SGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSL 101
Query: 55 NDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGV 114
N V MT+ + + E+L + A I+L
Sbjct: 102 NPV----MTIGDQI------------AEVLRLHGKGLSKKEAKERA-IEL---------- 134
Query: 115 ESSLITDYTLKILGLDICKDTIVGD---EMNRGISGGQKKRVTTGEMIVGPTKTLFMDEI 171
L+++G+ + + E+ SGG ++RV + K L DE
Sbjct: 135 ---------LELVGIPD-PERRLKSYPHEL----SGGMRQRVMIAMALALNPKLLIADEP 180
Query: 172 STGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL------FDDIILLSEGQIV 225
+T LD + QI+ L+++ +++ T DL D + ++ G+IV
Sbjct: 181 TTALDVTVQAQILDLLKELQREKGTALILI-------THDLGVVAEIADRVAVMYAGRIV 233
Query: 226 YQGPRERVLE 235
+GP E + +
Sbjct: 234 EEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 9e-10
Identities = 55/233 (23%), Positives = 92/233 (39%), Gaps = 52/233 (22%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHV 59
LLGP GKTTLL +AG D GEI +G + P++ + + Q+
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALF 84
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
+TV E + F + GV E+ R ++
Sbjct: 85 PHLTVAENIAFGLKLRGVPKA-----EIRARVREL------------------------- 114
Query: 120 TDYTLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGE-MIVGPTKTLFMDEISTGL 175
L+++GL+ +NR +SGGQ++RV + P L +DE + L
Sbjct: 115 ----LELVGLE--------GLLNRYPHELSGGQQQRVALARALAREP-SLLLLDEPLSAL 161
Query: 176 DSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
D+ ++ + L+++ T + E L D I +++EG+IV G
Sbjct: 162 DAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-10
Identities = 57/247 (23%), Positives = 97/247 (39%), Gaps = 59/247 (23%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+ LLGP +GK+TLL +AG D G I NG L + + ++ D VG
Sbjct: 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------VSNLAVRDRKVG 80
Query: 61 ----------EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATA 110
MTV + + F + R+E+ EAEI +
Sbjct: 81 FVFQHYALFPHMTVADNIAFGLKV--------------RKER----PSEAEIRA--RVEE 120
Query: 111 MEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE-MIVGPTKTLFMD 169
+ L + + + D +SGGQ++RV + V P K L +D
Sbjct: 121 L-----------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEP-KVLLLD 162
Query: 170 EISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229
E LD+ ++ + L+++ T + E +L D +++L++G+I GP
Sbjct: 163 EPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGP 221
Query: 230 RERVLEF 236
+ V +
Sbjct: 222 PDEVYDH 228
|
Length = 345 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 66/267 (24%), Positives = 102/267 (38%), Gaps = 82/267 (30%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDV---HV 59
LLGP GK+TLL +AG GEI +G + + P+K A + QN H
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPH- 89
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
MTV E + F + GV P+AEID E
Sbjct: 90 --MTVYENIAFGLKLRGV--------------------PKAEID----KRVKE------- 116
Query: 120 TDYTLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
K+LGL+ +NR +SGGQ++RV +V K +DE + LD
Sbjct: 117 ---VAKLLGLE--------HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165
Query: 177 SSTTYQIVKCLQQI--------VHVT-DATILMSLLQPAPETFDLFDDIILLSEGQIVYQ 227
+ + ++++ ++VT D M+ L D I+++++G+I
Sbjct: 166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMT----------LADRIVVMNDGRIQQV 215
Query: 228 GPRERVLEFFESCGFCCPERKGTADFL 254
G + E P A F+
Sbjct: 216 GTPLELYE--------RPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 57/241 (23%), Positives = 92/241 (38%), Gaps = 48/241 (19%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+ LG +GK+T L L G L L G++ NG P + ++ V
Sbjct: 52 IVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNG-----KDPFRRREEYLRSIGLV- 102
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
M K L + L E+L + P+ E E
Sbjct: 103 -MGQKLQLWW---DLPALDSLEVLKLIYE-------IPDDE----FAERLDFLTE----- 142
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
IL L+ + + R +S GQ+ R ++ P K LF+DE + GLD +
Sbjct: 143 -----ILDLE----GFLKWPV-RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFD----LFDDIILLSEGQIVYQGPRERVLEF 236
I + L++ AT+L+ FD L D ++L+ +GQ+V+ G ++ E
Sbjct: 193 ANIREFLKEYNEERQATVLL-----TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247
Query: 237 F 237
F
Sbjct: 248 F 248
|
Length = 325 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 50/216 (23%), Positives = 94/216 (43%), Gaps = 34/216 (15%)
Query: 737 ALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISG---FPKKQETFARISG----YCE 786
++G SG+GK+ L + G + + G+I G ++ +I G
Sbjct: 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94
Query: 787 QNDIHS--PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGV 844
Q+ + S P +T+ + I K +SK++ E ++L+EL VG+P
Sbjct: 95 QDPMTSLNPVMTIGD-QIAEVLRLHGKGLSKKEAK---ERAIELLEL-------VGIPDP 143
Query: 845 TG--------LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 895
LS R+R+ IA+ L NP ++ DEPT+ LD A ++ ++ +
Sbjct: 144 ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK 203
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
G ++ H + + E D + ++ G+++ GP
Sbjct: 204 GTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 61/258 (23%), Positives = 122/258 (47%), Gaps = 41/258 (15%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
+++V + F G A++G +G+GK+TL+ + + T G + DI I+ K
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTK------ 76
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF--------VEEVMD---- 827
D + V + +++ E + E +IIF ++EV +
Sbjct: 77 ---------DKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHR 127
Query: 828 -LVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
L++L +D + P +S Q +++ I L NP II +DEPT+GLD ++ VM
Sbjct: 128 LLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVM 185
Query: 887 RTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP--LGRNSHKVIEYY 943
R +++ D +T++ H + ++ DE++++K G V + P L ++ K+ +++
Sbjct: 186 RLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWH 244
Query: 944 EAIPGVPK----IKEKYN 957
+P + + ++KY
Sbjct: 245 IGLPEIVQLQYDFEQKYQ 262
|
Length = 286 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
D +G E R +SGGQ++ V ++ L +DE ++ +D+ + + L++ +
Sbjct: 592 DMQIG-ERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA- 649
Query: 194 TDATIL-----MSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
T++ SLL DL D II++ G+IV GP+++VLE
Sbjct: 650 -GKTLVLVTHRTSLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 58/237 (24%), Positives = 94/237 (39%), Gaps = 62/237 (26%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSA-------YIS 53
++GP SGK+TLL L G L D GE+ NG L + ++ + ++
Sbjct: 33 FVAIVGPSGSGKSTLL-NLLGGL--DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVF 89
Query: 54 QNDVH--VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAM 111
QN + ++TV E ++ G A R K A
Sbjct: 90 QN--FNLLPDLTVLENVELPLLIAGK---------SAGRRKRA----------------- 121
Query: 112 EGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEI 171
+ L++LGL+ E+ SGGQ++RV ++ K + DE
Sbjct: 122 --------AEELLEVLGLEDRLLKKKPSEL----SGGQQQRVAIARALINNPKIILADEP 169
Query: 172 STG-LDSSTTYQIVKCLQQIVHVTDATILMSLLQPA---PETFDLFDDIILLSEGQI 224
TG LDS T ++++ L+++ TI+M PE D +I L +G+I
Sbjct: 170 -TGNLDSKTAKEVLELLRELNKERGKTIIM-----VTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-09
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 35/223 (15%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISGFPKKQ---ET 777
L+ V+ RPG A++G G+GK+TL+ +L G Y EG + + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
R GY Q D T+++++ A A + EE++ EL + +
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA--PYADD----------EEILRAAELAGVTEF 583
Query: 838 IVGLP---------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
+ P LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 889 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
++ + G+T+V H+ S + + D ++++ G+++ GP
Sbjct: 644 LKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 19/164 (11%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK------TGGYIEGDIRISGFPKKQ 775
LL V G + LMG SG GK+TL+ + G TG + R+ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
R G Q+ + P ++V ++L+++ L + + ++ L+
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879
P LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-09
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQET 777
R L ++ + G AL+G +G+GK+TL+ L G + T G + GDI +S K++E
Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79
Query: 778 --FARISGYCEQNDIHSPQVTVKESLIYS--AFLRLAKEVSKEDKIIFVEEVMDLVELES 833
+ G Q P+ + E + AF + KE E +++V L
Sbjct: 80 KPVRKKVGVVFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA- 134
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
+ P LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ +
Sbjct: 135 -DEFWEKSP--FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+G+TVV H D+ + D + LL++G
Sbjct: 192 QSGQTVVLVTHLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 27/233 (11%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFP-KKQETF 778
L V+ G + ++G +G GKTTL+ L G K+G IR+ G K
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGS-----IRLDGEDITKLPPH 70
Query: 779 ARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE-LESL 834
R Y Q P++TV+E+L+ LA + KI +E+ +L L+ +
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLL----TGLAALPRRSRKIP--DEIYELFPVLKEM 124
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 125 LGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 895 TGRTVVCTIHQPSIDI-FEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAI 946
G + + Q +D E D +++R G+V+ SG + Y A+
Sbjct: 180 EGGMAILLVEQ-YLDFARELADRYYVMER-GRVVASGAGDELDEDKVRRYLAV 230
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 47/229 (20%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
++GP SGK+TLL + G L+R GE+ +G D+
Sbjct: 32 FVAIVGPSGSGKSTLL-NILGGLDR--PTSGEVRVDG-----------------TDIS-- 69
Query: 61 EMTVKETLDFSARCLG-VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
+++ KE F R +G V + LL +L E ++L + + E
Sbjct: 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALEN---------VELPLLLAGVPKKERRER 120
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGI---SGGQKKRVTTGEMIVGPTKTLFMDEISTG-L 175
+ L+ +GL GD +N SGGQ++RV + K + DE TG L
Sbjct: 121 AEELLERVGL--------GDRLNHYPSELSGGQQQRVAIARALANDPKIILADE-PTGNL 171
Query: 176 DSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQI 224
DS T ++++ L+++ TI++ PE + D II L +G+I
Sbjct: 172 DSETGKEVMELLRELNKEAGTTIVVVTHD--PELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-09
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 21/205 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
LL+E+ RPG + G SGAGKT+L+ LAG + G I P
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL--- 459
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
+ Q + PQ T++E+L Y A + S + + V+ V L L + +
Sbjct: 460 --FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDEE 509
Query: 842 -PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 900
LS +++RL A L+ P +F+DE TS LD + + ++ + TV+
Sbjct: 510 DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVI 568
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQ 925
H+P++ F + +L LL G
Sbjct: 569 SVGHRPTLWNFHS-RQLELLDDAGG 592
|
Length = 604 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 62/240 (25%), Positives = 99/240 (41%), Gaps = 28/240 (11%)
Query: 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY------IEGDIRI 768
VA +L +++ PG + AL+G +GAGK+TL+ LAG TGG + GD+ +
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 769 SGFPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAF--LRLAKEVSKEDKIIFVE 823
+G P AR+ Q + + +E ++ + R A ++ D
Sbjct: 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDG----- 123
Query: 824 EVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVEL---------VANPSIIFMDEPT 874
E+ + A+VG VT LS + R+ A L P + +DEPT
Sbjct: 124 EIAWQALALAGATALVG-RDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933
+ LD ++ TVR V I H P++ A D + +L G V + P
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPAD 241
|
Length = 272 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 25/223 (11%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET 777
D + L ++ + G AL+G +GAGK+TL+ L G G +++ G E
Sbjct: 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAEN 73
Query: 778 FARISG-----YCEQNDIHSPQV---TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
+ + + +D QV TV + + AF + + K++ VEE + V
Sbjct: 74 EKWVRSKVGLVFQDPDD----QVFSSTVWDDV---AFGPVNMGLDKDEVERRVEEALKAV 126
Query: 830 ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 889
+ +D LS Q+KR+ IA L +P +I +DEP + LD R +M +
Sbjct: 127 RMWDFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 890 RNTVDTGRTVVCTIHQPSIDI-FEAFDELLLLKRGGQVIYSGP 931
+ G+TV+ H +D+ E D++++LK G +
Sbjct: 182 DRLHNQGKTVIVATH--DVDLAAEWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQE 776
+L ++ + G + ++G SG+GK+TL+ L G G I D G K
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
R G Q P +TV E++ + K++SK + E+++ V L D
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLA--PVKVKKLSKAEAREKALELLEKVGLADKAD 131
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
A P LS Q++R+ IA L +P ++ DEPTS LD V+ +++ + G
Sbjct: 132 A---YPA--QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186
Query: 897 RTVVCTIHQ 905
T++ H+
Sbjct: 187 MTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 4e-09
Identities = 56/199 (28%), Positives = 86/199 (43%), Gaps = 38/199 (19%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISGFPKKQ---ET 777
L ++ PG AL+G SG GK+T++ +L R Y G+I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RF---YDPTSGEILLDGVDIRDLNLRW 74
Query: 778 FARISGYCEQNDIHSPQV---TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
G Q P + T+ E++ Y K D EEV + + ++
Sbjct: 75 LRSQIGLVSQE----PVLFDGTIAENIRY----------GKPDAT--DEEVEEAAKKANI 118
Query: 835 KDAIVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
D I+ LP G G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V
Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 886 MRTVRNTVDTGRTVVCTIH 904
+ + GRT + H
Sbjct: 179 QEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 28/166 (16%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIRISGFPKKQETFA 779
L+EV+ + G + +G +GAGK+T M ++ G Y+ G +++ G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 780 --RISGYCEQNDIHSP---QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL--E 832
R GY + H+P + V+E L + A + K + + VEE+++LV L E
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPE 126
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
K + LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKK-------IGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 55/244 (22%), Positives = 95/244 (38%), Gaps = 47/244 (19%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAY-IS---QNDV 57
L+GP +GKTTL + G G + + G + P + + I+ Q
Sbjct: 33 VGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQI-T 88
Query: 58 HV-GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116
+ +TV E + +G R L L R E E + A E
Sbjct: 89 RLFPGLTVLENV-----AVGAHARLGLSGLLGRPRARKE---EREA----RERARE---- 132
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
L+ +GL D G+ +S GQ++R+ + K L +DE + GL+
Sbjct: 133 ------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181
Query: 177 SSTTYQIVKCLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231
T ++ + ++++ TIL M L+ L D I++L+ G+++ +G E
Sbjct: 182 PEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLADRIVVLNYGEVIAEGTPE 235
Query: 232 RVLE 235
V
Sbjct: 236 EVRN 239
|
Length = 250 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 59/262 (22%), Positives = 102/262 (38%), Gaps = 61/262 (23%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKV-RGEITYNGYRLNEFVPQKTSA---YIS-QNDVH 58
++GP SGK+TL +AG + +V G I + G L E P + + +++ Q
Sbjct: 31 IMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEE 88
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
+ ++ E L + ARR E +DL ++
Sbjct: 89 IPGVSNLEFLRSALN--------------ARRSARG----EEPLDLLDFLKLLKAK---- 126
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
L +LG+D + + +N G SGG+KKR +M + K +DEI +GLD
Sbjct: 127 -----LALLGMD---EEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178
Query: 179 TTYQIVKCLQQ-------IVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231
+ + + + + +T L++ ++P D + +L +G+IV G E
Sbjct: 179 ALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP--------DYVHVLLDGRIVKSGDVE 230
Query: 232 RVLEFFESCGFCCPERKGTADF 253
E E KG
Sbjct: 231 LAKEL---------EEKGYDWV 243
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 6e-09
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 25/168 (14%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIR-ISGFPKKQET 777
L +++ + + G L+G SG GKTTL+ ++AG R+T G I R I+ P ++
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
+ G Q+ P +TV +++ Y + + + + V E++DLV
Sbjct: 78 Y----GIVFQSYALFPNLTVADNIAYGLK---NRGMGRAEVAERVAELLDLV-------- 122
Query: 838 IVGLPGVTG-----LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
GLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 123 --GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 68/243 (27%), Positives = 108/243 (44%), Gaps = 61/243 (25%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRD---LKVRGE-ITYNGYRLNEFVPQKTSAYISQN- 55
M LLGP +GK+TL L G L + ++GE I Y+ L E +KT + QN
Sbjct: 30 MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV--RKTVGIVFQNP 87
Query: 56 DVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVE 115
D + TV+E + F LG+ E+ +R K+A +KA MEG E
Sbjct: 88 DDQLFAPTVEEDVAFGPLNLGLSK-----EEVEKRVKEA-----------LKAVGMEGFE 131
Query: 116 SSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 175
++ +SGGQKKRV ++ + + +DE ++GL
Sbjct: 132 -----------------------NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
Query: 176 DSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL------FDDIILLSEGQIVYQG- 228
D QI+K L + + TI++S T D+ D + ++S+G+I+ +G
Sbjct: 169 DPMGASQIMKLLYDL-NKEGITIIIS-------THDVDLVPVYADKVYVMSDGKIIKEGT 220
Query: 229 PRE 231
P+E
Sbjct: 221 PKE 223
|
Length = 275 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 7e-09
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 22/170 (12%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFP----- 772
+LN V+ + + G AL+G SG GK+TL +L G + G++ G P
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ----GNVSWRGEPLAKLN 80
Query: 773 -KKQETFARISGYCEQNDIHS--PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
+++ F R Q+ I + P+ TV+E + LR + K +++ E++ V
Sbjct: 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAV 138
Query: 830 EL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
+L +S+ D P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 139 DLDDSVLDK---RPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 61/218 (27%), Positives = 99/218 (45%), Gaps = 26/218 (11%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
L +V+ + G A++G +G+GK+TL +L G G I + G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 781 IS---GYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
+ G QN D TV++ + AF V +E+ + V++ + V +E +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDV---AFGLENIGVPREEMVERVDQALRQVGMEDFLN 135
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 896
P LS Q++R+ IA L P II +DE TS LD R V+ TVR +
Sbjct: 136 R---EP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 897 R-TVVCTIHQPSIDIFEAF--DELLLLKRGGQVIYSGP 931
TV+ H D+ EA D ++++ G+++ G
Sbjct: 191 GITVLSITH----DLDEAAQADRVIVM-NKGEILEEGT 223
|
Length = 279 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 15/162 (9%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISGFPKKQ--E 776
+N+V+ R G + +MG+SG+GK+TL+ + T G I+G I+ +K+ E
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ-DIAAMSRKELRE 98
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
+ Q+ P TV E++ + L + V + ++ E ++LV LE +
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFG--LEVQG-VPRAEREERAAEALELVGLEGWEH 155
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
P LS ++R+ +A L +P I+ MDE S LD
Sbjct: 156 K---YPD--ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-09
Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 19/220 (8%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ 775
D L + + G + A++G +GAGK+TL L G + + G I D + + +K
Sbjct: 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG 76
Query: 776 ETFARIS-GYCEQNDIHSP-QVTVKESLIYSAF-LRLAK-EVSKEDKIIFVEEVMDLVEL 831
R S G Q+ + +V + + + A L+L + EV K V+ + +
Sbjct: 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRTGI 131
Query: 832 ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
E LKD P LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 EHLKDK----P-THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE 186
Query: 892 TV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ G T++ H IDI + + + + + G+VI G
Sbjct: 187 MQKELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 47/176 (26%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQN-DVHVG 60
L G +GKTTL LAG L + + G I NG + +K+ Y+ Q+ D +
Sbjct: 29 IALTGKNGAGKTTLAKILAG-LIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
+V+E L + EL + A E V
Sbjct: 86 TDSVREELLLGLK------------ELDAGNEQA-----------------ETV------ 110
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
LK L L K + +SGGQK+R+ ++ L DE ++GLD
Sbjct: 111 ---LKDLDLYALK-----ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 1e-08
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 30/219 (13%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISGFPKKQETFAR 780
L ++ + G AL+G +G GK+TL+ +L T + +G+I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLR----LAKEVSKEDKIIFVEEVMDLVELESLKD 836
I+ Y E + V + ++SA LR LA + ++ +I EV+ V LE L +
Sbjct: 404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALI---EVLQQVGLEKLLE 460
Query: 837 AIVGLPGVTG-----LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
GL G LS +++RL IA L+ + ++ +DEPT GLDA ++ +
Sbjct: 461 DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLA- 519
Query: 892 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+TV+ H+ + E FD + ++ GQ+I G
Sbjct: 520 EHAQNKTVLMITHR--LTGLEQFDRICVMD-NGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 730 FRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIR-ISGFPKKQETFARI 781
+ G + AL+G SG GKTT + D+ G + G I D + I G R
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ESLKDAIVG 840
G Q P ++V ++++ A L+LA ++ + E + L + +KD +
Sbjct: 87 VGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRL-K 143
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MRTVRNTVDTGRT 898
P TGLS Q++RL IA L P I+ MDEPTS LD + A + + T V T
Sbjct: 144 TPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIII 202
Query: 899 VVCTIHQPS 907
V +HQ +
Sbjct: 203 VTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 34/215 (15%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIRISGFPKK 774
LN ++ G A++G SGAGK+T++ DV +G T I+G DIR +
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRD---VTQ 332
Query: 775 QETFARISGYCEQNDIHSPQVTV--KESLIYSAFLRLAKEVSKEDKIIFVEE---VMDLV 829
Q I PQ TV +++ Y+ ++ + + +++ E + D +
Sbjct: 333 QSLRRAIG--------IVPQDTVLFNDTIAYN--IKYGRPDATAEEVGAAAEAAQIHDFI 382
Query: 830 E-LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
+ L D VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 383 QSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA 441
Query: 889 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+R V GRT + H+ S I +A DE+++L G
Sbjct: 442 LRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 45/233 (19%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRIS-------GFPK 773
L +++ G ++G +GAGK+TL+ ++AG + T G ++ +++ GF
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGF-- 100
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESLI-YSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
P++T +E++ L L ++ E V+E+++ EL
Sbjct: 101 ------------------DPELTGRENIYLRGLILGLTRKEIDE----KVDEIIEFAELG 138
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
D P V S RL +V P I+ +DE + DA + +
Sbjct: 139 DFID----QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEA 945
V+ +T+V H I + D + L+ GQ+ G +VI YE
Sbjct: 194 VEKNKTIVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPE----EVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 706 MPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG--Y 761
M E+K+ G ++LN ++ + R G A+ G SG GK+TL+ ++A T G
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 762 IEG-DIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKII 820
EG D+ ++ ++S YC Q TV+++LI+ +R + D+
Sbjct: 62 FEGEDVSTLKPEAYRQ---QVS-YCAQTPALFGD-TVEDNLIFPWQIR----NRRPDRAA 112
Query: 821 FVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
+ DL+ +L D+I+ +T LS +++R+ + L P I+ +DE TS LD
Sbjct: 113 AL----DLLARFALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES 167
Query: 881 AA----AIVMRTVRNTVDTGRTVVCTIHQP 906
++ R VR + V+ H
Sbjct: 168 NKRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYI--EG---DIRISGFPKK 774
+L + F + L+G +G GK+TL L+G R G + +G D G
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
++ A + EQ + T +S I + L V + + V+E + LV+ +
Sbjct: 76 RQQVATVFQDPEQQIFY----TDIDSDIAFSLRNLG--VPEAEITRRVDEALTLVDAQHF 129
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
+ + LS Q+KR+ IA LV + +DEPT+GLD ++ +R V
Sbjct: 130 RHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 895 TGRTVVCTIHQPSID-IFEAFDELLLLKRGGQVIYSGP 931
G V+ + H ID I+E D + +L++G + + P
Sbjct: 185 QGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 19/79 (24%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGGQ++RV ++ L +DE ++GLD ++ ++++ L+++ T+++
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHD 139
Query: 205 PAPETFDLFDDIILLSEGQ 223
P D +I+L +G+
Sbjct: 140 P-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 59/249 (23%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHV 59
+ LLGP SGK+TLL +AG D G I NG + ++ Q+
Sbjct: 28 LVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALF 84
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
+TV++ + F E+ + K +A ++ ++ +EG
Sbjct: 85 KHLTVRDNIAFGL-------------EIRKHPKAK---IKARVEELLELVQLEG------ 122
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
+GD +SGGQ++RV + + L +DE LD+
Sbjct: 123 -----------------LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV 165
Query: 180 TYQIVKCLQQI---VHVTDATILMSLLQPAPETFDLFDDIILLSEGQI--------VYQG 228
++ L+++ VHVT T+ ++ Q E ++ D I+++S G+I VY
Sbjct: 166 RKELRSWLRKLHDEVHVT--TVFVTHDQ--EEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
Query: 229 PRER-VLEF 236
P V+ F
Sbjct: 222 PANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 15/146 (10%)
Query: 738 LMGVSGAGKTTLMDVLAGRKT---GGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 794
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKR 854
+TV+E++ + L++ K V + + V E + LV+LE D LS Q++R
Sbjct: 57 MTVEENVAFG--LKMRK-VPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 855 LTIAVELVANPSIIFMDEPTSGLDAR 880
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 27/221 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISG----FPKKQE 776
L+ V RP + ALMG +GAGK+TL+ L G +K G I G F +E
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKSSKE 69
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLA-----KEVSKEDKIIFVEEVMDLVEL 831
Q Q +V +++ + ++ ++ K IF E +D+
Sbjct: 70 ALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR 129
Query: 832 ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
V LS+ Q + + IA N I+ MDEPTS L + + +R
Sbjct: 130 AK----------VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179
Query: 892 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932
+ G +V H+ +IF+ DE+ +L R GQ I + PL
Sbjct: 180 LKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 23/202 (11%)
Query: 737 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS---GYCEQN---DI 790
A++G +GAGK+TL G G + I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 791 HSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849
SP TV++ + + L L +E V + ++ LE L+D + P LS
Sbjct: 92 FSP--TVEQDIAFGPINLGLDEETVAHR----VSSALHMLGLEELRDRV---P--HHLSG 140
Query: 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSI 908
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 141 GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ--L 198
Query: 909 DIFEAFDELLLLKRGGQVIYSG 930
D+ + + + G+++ G
Sbjct: 199 DLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 53/193 (27%), Positives = 77/193 (39%), Gaps = 71/193 (36%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISGFPKKQ 775
L ++ + AL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG----- 73
Query: 776 ETFARISGYCEQNDIHSPQVTVKE-----------------SLIY---SAFLRLAKEVSK 815
+I+ P+V V E S IY + LRL K
Sbjct: 74 ------------KNIYDPKVDVVELRRRVGMVFQKPNPFPMS-IYDNVAYGLRLHGIKDK 120
Query: 816 EDKIIFVEEVMDLVELESLKDAIVGL----------PGVTGLSIEQRKRLTIAVELVANP 865
E + ++VE SLK A L GLS Q++RL IA L P
Sbjct: 121 E--------LDEIVE-SSLKKA--ALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAVKP 168
Query: 866 SIIFMDEPTSGLD 878
++ MDEPTS LD
Sbjct: 169 EVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 42/262 (16%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFA---RISGYCE 786
G+ AL G SG+GKT+L++++AG R G IE + R+ +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTG 846
Q+ P TV+ +L Y + + ++++ L+ +E L D PG
Sbjct: 83 QDARLFPHYTVRGNLRYGM-----WKSMRAQ----FDQLVALLGIEHLLDR---YPGT-- 128
Query: 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIV--MRTVRNTVDTGRTVVCTI 903
LS +++R+ I L+ P ++ MDEP + LD R I+ + +R+ ++ ++
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI--PILYVS 186
Query: 904 HQPSID-IFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPK---------IK 953
H S+D + D +++L+ G+V SGPL +V + P +P+
Sbjct: 187 H--SLDEVLRLADRVVVLEN-GKVKASGPLE----EVWGSPDFPPWLPREEQSSVLEGTV 239
Query: 954 EKYNPATWMLEVSSAAAEVRLG 975
+++P + ++ + +
Sbjct: 240 LEHDPRYGLTALALGDQHLWVP 261
|
Length = 352 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 18/187 (9%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGR------KTGGYIEGDIRISGF--PKKQETFARIS 782
R G + L+G +G GK+T + +LAG+ K + D + F + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 783 GYCEQNDIHSPQVTVKESLIYSAFLRLAKEV-SKEDKIIFVEEVMDLVELESLKDAIVGL 841
+ I PQ LI A E+ K+D+ ++E++D +EL + D
Sbjct: 84 EG-DVKVIVKPQYV---DLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR---- 135
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
+ LS + +R+ IA L + F DEP+S LD + R +R + V+
Sbjct: 136 -NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194
Query: 902 TIHQPSI 908
H ++
Sbjct: 195 VEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 57/211 (27%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
L+GP +GK+TLL + +L G I NG +++ + Y+ + +G
Sbjct: 29 FVFLVGPSGAGKSTLLKLIYK---EELPTSGTIRVNGQDVSDL-RGRAIPYLRR---KIG 81
Query: 61 ----------EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATA 110
+ V E + F+ GV R E+ +R A
Sbjct: 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA---------------- 120
Query: 111 MEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDE 170
L+++GL + +SGG+++RV IV L DE
Sbjct: 121 -------------LELVGL---SHKH--RALPAELSGGEQQRVAIARAIVNSPTILIADE 162
Query: 171 ISTGLDSSTTYQIVKCLQQIVHVTDATILMS 201
+ LD TT++I+ L++I + T++++
Sbjct: 163 PTGNLDPDTTWEIMNLLKKI-NKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 53/251 (21%), Positives = 88/251 (35%), Gaps = 72/251 (28%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG------------YRLNEFVPQKTSAY 51
++G SGK+TL LAG G I +G YR + V Q
Sbjct: 38 IVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQD---- 90
Query: 52 ISQNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAM 111
+ ++ TV L R G+ + ++EL +
Sbjct: 91 -PYSSLN-PRRTVGRILSEPLRPHGLSKSQQRIAELLDQV-------------------- 128
Query: 112 EGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEI 171
G+ S + ++ SGGQ++R+ ++ K L +DE
Sbjct: 129 -GLPPSFLDRRPHEL-------------------SGGQRQRIAIARALIPEPKLLILDEP 168
Query: 172 STGLDSSTTYQIVKCLQQIVHVTDATILM-----SLLQPAPETFDLFDDIILLSEGQIVY 226
++ LD S QI+ L ++ T L +L++ + D I ++ GQIV
Sbjct: 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVE------HMCDRIAVMDNGQIVE 222
Query: 227 QGPRERVLEFF 237
GP E +L
Sbjct: 223 IGPTEELLSHP 233
|
Length = 252 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 18/177 (10%)
Query: 738 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG-------FPKKQETFA--RISGYCEQN 788
L+G SGAGK++L+ VL + G + I+G P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLS 848
P +TV+E+LI A R+ +SK+ + E+++ + L+ D P LS
Sbjct: 91 YNLWPHLTVQENLI-EAPCRVLG-LSKDQALARAEKLLKRLRLKPYADR---YP--LHLS 143
Query: 849 IEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 905
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP-------KK 774
+L+ V+ + G + A++G SG+GK+TL+ +L G T GD+ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
E + G+ Q P T E++ + K + LE L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSR-----------ALEML 130
Query: 835 KDAIVGLPG-----VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 882
A VGL + LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 131 --AAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIRISGFPKKQETFARISGYCEQND 789
G + A+MG SGAGK+TL++++AG G D +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849
+TV++++ L +++ E + E+V+D + + D + LP LS
Sbjct: 82 F--AHLTVRQNIGLG--LHPGLKLNAEQQ----EKVVDAAQQVGIADYLDRLPE--QLSG 131
Query: 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSI 908
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190
Query: 909 DIFEAFDELLLLKRG 923
D ++ ++ +G
Sbjct: 191 DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 63/276 (22%), Positives = 111/276 (40%), Gaps = 56/276 (20%)
Query: 698 DSVYYYVDMPPEMKEQGVAEDKLR------------------LLNEVTSAFRPGVLAALM 739
+S++ +D PPE A ++ R L+ ++ PG AL+
Sbjct: 305 ESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALV 364
Query: 740 GVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQ--NDIHSPQVTV 797
G SG+GK+TL++++ + G I + G T A + D+ T+
Sbjct: 365 GRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTI 422
Query: 798 KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP-------GVTG--LS 848
++ Y ++ + E+ + +D + LP G G LS
Sbjct: 423 ANNIAYGR----TEQADR-------AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS 471
Query: 849 IEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQ 905
QR+RL IA L+ + I+ +DE TS LD + R V+ ++ GRT + H+
Sbjct: 472 GGQRQRLAIARALLKDAPILILDEATSALDNESE----RLVQAALERLMQGRTTLVIAHR 527
Query: 906 PSIDIFEAFDELLLLKRGGQVIYSGP----LGRNSH 937
S E D ++++ G+++ G L RN
Sbjct: 528 LS--TIEKADRIVVMDD-GRIVERGTHNELLARNGL 560
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 4e-08
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 829 VELESLKDAI---VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
V S +DA + + V LS+ +R+ + IA L N ++ +DEPT+ L +
Sbjct: 64 VSFASPRDARRAGIAM--VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERL 121
Query: 886 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ +R G V+ H+ ++FE D + +L+ G
Sbjct: 122 FKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 27/238 (11%)
Query: 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP--- 772
A+ + +L V+ + G L+G SG GK+TL +L G + +G + G
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQ 77
Query: 773 ---KKQETFARISGYCEQNDIHS--PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD 827
K++ F R Q+ + P++TV++ + LR + + ++ + E++D
Sbjct: 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLD 135
Query: 828 LVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
+V L S + LP LS Q +R+ IA L P +I +DE S LD A+++
Sbjct: 136 MVGLRS--EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191
Query: 888 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI----------YSGPLGRN 935
+R T I + + ++F + + + GQ++ + P GRN
Sbjct: 192 LLRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRN 248
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 26/209 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISGFPKKQETF 778
L V + G +L+G SG GK+TL+++++G + T G +EG P + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
QN P +TV+E+ I A R+ ++SK ++ VEE + LV L D
Sbjct: 61 --------QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 897
G LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 112 PG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 898 TVVCTIHQPSIDIFEAF---DELLLLKRG 923
TV+ H D+ EA D +++L G
Sbjct: 167 TVLMVTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 57/214 (26%), Positives = 89/214 (41%), Gaps = 39/214 (18%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIRISGFPKKQETFARISGYCEQN 788
G L L+G +GAGKTTL+ R G I +G ++++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 789 ---------DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
+ ++ + I +LR V + + V L L D V
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHI--GWLRR----PCVADFAAVRDALRRVGLTELADRPV 111
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
G LS QR+R+ +A L PS++ +DEP +GLD ++ G +
Sbjct: 112 G-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166
Query: 900 VCTIHQPSIDIFEAF---DELLLLKRGGQVIYSG 930
+ T H D+ +A D ++LL G+VI G
Sbjct: 167 LMTTH----DLAQAMATCDRVVLLN--GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 51/221 (23%), Positives = 81/221 (36%), Gaps = 44/221 (19%)
Query: 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG---- 770
V+ +L V + G + ALMG +G+GK+TL + G EG+I G
Sbjct: 8 VSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67
Query: 771 FPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE 830
+E Q P V + FLR +V E
Sbjct: 68 DLPPEERARLGIFLAFQYPPEIPGVKNAD------FLR------------YVNE------ 103
Query: 831 LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
G S ++KR I L+ P + +DEP SGLD A +V +
Sbjct: 104 ---------------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN 148
Query: 891 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ G++V+ H + + D + +L G+++ SG
Sbjct: 149 KLREEGKSVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGD 188
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 6e-08
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 48/242 (19%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAY-IS---QNDV 57
L+GP +GKTTL ++G L G + ++G + P + + I Q
Sbjct: 29 HGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPR 85
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
E+TV E + +A+ T LL ARRE+ + A E
Sbjct: 86 LFPELTVLENVMVAAQA---RTGSGLLLARARREERE-----------ARERAEE----- 126
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
L+ +GL D G+ +S GQ++R+ + K L +DE + GL+
Sbjct: 127 -----LLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 178 STTYQIVKCLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQIVYQGPRER 232
T ++ + ++++ T+L M ++ L D + +L +G+++ +G +
Sbjct: 177 EETEELAELIRELRE-RGITVLLVEHDMDVV------MSLADRVTVLDQGRVIAEGTPDE 229
Query: 233 VL 234
V
Sbjct: 230 VR 231
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 6e-08
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 42/220 (19%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFA 779
+L +V+ PG + AL+G SG+GK+T++ +L + GG + D G P
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD----GKP------- 77
Query: 780 RISGYCEQNDIHSPQVTV-KESLIYSAFLRLAKEVSKEDKIIF------VEEVMDLVELE 832
IS Y E +HS V +E ++++ L+ D I + E V + +
Sbjct: 78 -ISQY-EHKYLHSKVSLVGQEPVLFARSLQ--------DNIAYGLQSCSFECVKEAAQKA 127
Query: 833 SLKDAIVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
I L G G LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQ 187
Query: 884 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
V + + + RTV+ H+ + E D++L+L G
Sbjct: 188 QVQQALYDW-PERRTVLVIAHR--LSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 7e-08
Identities = 53/245 (21%), Positives = 85/245 (34%), Gaps = 63/245 (25%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS----AYISQNDV 57
LLG +GKTTLL + G L G I ++G + P + + Y+ +
Sbjct: 29 VALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDITGLPPHERARAGIGYVPEGRR 85
Query: 58 HVGEMTVKETLDFSARCLGVGTR-------YELLSELARREKDAGIFPEAEIDLFMKATA 110
E+TV+E L A R YEL L R K
Sbjct: 86 IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLA--------------- 130
Query: 111 MEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDE 170
TL SGG+++ + ++ K L +DE
Sbjct: 131 -----------GTL---------------------SGGEQQMLAIARALMSRPKLLLLDE 158
Query: 171 ISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230
S GL +I + ++++ TIL+ Q A ++ D +L G++V +G
Sbjct: 159 PSEGLAPKIVEEIFEAIREL-RDEGVTILLV-EQNARFALEIADRAYVLERGRVVLEGTA 216
Query: 231 ERVLE 235
+L
Sbjct: 217 AELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 24/209 (11%)
Query: 729 AFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR--ISGYCE 786
F G + A++G SG+GK+TL++++AG +T G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 787 QNDIHSPQVTVKES--LIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGV 844
+N++ +TV+++ L S L+L E + ++ + L LE LPG
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALAR--VGLAGLEKR------LPGE 128
Query: 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGRTVVC 901
LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T TV+
Sbjct: 129 --LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMTVLM 184
Query: 902 TIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
HQP D ++ L G++ G
Sbjct: 185 VTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 7e-08
Identities = 68/237 (28%), Positives = 101/237 (42%), Gaps = 31/237 (13%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDI 766
M G + + L V PG + AL+G +GAGK+TLM VL+G T G I I
Sbjct: 7 SMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI--TI 64
Query: 767 RISGFPKKQETFARISG----YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKI--- 819
+ K A G Y E + I ++TV E+L L K+V + I
Sbjct: 65 NNINYNKLDHKLAAQLGIGIIYQELSVID--ELTVLENLYIGRHL--TKKVCGVNIIDWR 120
Query: 820 ---IFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
+ ++ V L+ D V LSI ++ L IA L+ + +I MDEPTS
Sbjct: 121 EMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175
Query: 877 LDARAAA---IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
L + ++M +R G +V H+ + +I D ++K G V SG
Sbjct: 176 LTNKEVDYLFLIMNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDGSSV-CSG 227
|
Length = 510 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 54/218 (24%), Positives = 96/218 (44%), Gaps = 37/218 (16%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVL-------AGRKTGGYIEGDIRISGFPKK- 774
+N+ A G + +MG+SG+GK+T + +L AG+ +I+G+ + P +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
+E + G Q P +T+ ++ L +E K E+ ++L++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLG--PELLGWPEQERK----EKALELLKL--- 116
Query: 835 KDAIVGLPGVTG-----LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 889
VGL LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 890 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELLLLKRG 923
+ T +T+V H D+ EA D ++++K G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-08
Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 55/240 (22%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQNDVHVG 60
+LG SGK+TLL LAG + +G IT NG + Q +T + ++Q VH+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLF 424
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
T+++ L L + A E+ + ++ ++ +A +G+ + L
Sbjct: 425 SGTLRDNL-------------RLANPDASDEELWAALQQVGLEKLLE-SAPDGLNTWL-- 468
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
E R +SGG+++R+ ++ +DE + GLD T
Sbjct: 469 ------------------GEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDL-----FDDIILLSEGQIVYQGPRERVLE 235
Q++ L + H T+LM T L D II+L G+I+ +G +L
Sbjct: 511 RQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 9e-08
Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 39/217 (17%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
L ++ + +PG ++G +G+GK++L +LA + G I I G ++I
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGVD-----ISKIG 72
Query: 783 GYCEQNDIHS-----PQVTVKESLIYSAFLR--LAKEVSKEDKIIFVEEVMDLVELESLK 835
+D+ S PQ + +++S +R L D EE+ +E LK
Sbjct: 73 ----LHDLRSRISIIPQ----DPVLFSGTIRSNLDPFGEYSD-----EELWQALERVGLK 119
Query: 836 DAIVGLPG-----VT----GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
+ + LPG V LS+ QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 887 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+T+R TV+ H+ +D D +L+L +G
Sbjct: 180 KTIR-EAFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 68/225 (30%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETF 778
+ L + + VL + GVSG+GK+TL+ G Y G R+ F K
Sbjct: 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKFS-- 58
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
+K+IF++++ L++
Sbjct: 59 -------------------------------------RNKLIFIDQLQFLID-------- 73
Query: 839 VGLPGVT------GLSIEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVR 890
VGL +T LS + +R+ +A EL + P ++ +DEP++GL + ++ ++
Sbjct: 74 VGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIK 133
Query: 891 NTVDTGRTVVCTIHQPSIDIFEAFDELLLL-----KRGGQVIYSG 930
+D G TV+ H D+ + D ++ K GG+V++SG
Sbjct: 134 GLIDLGNTVILIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 9e-08
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 20/153 (13%)
Query: 740 GVSGAGKTTLMDVLAGRK--TGG--YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQV 795
G SG GK+TL+ ++AG + T G +I G+ R++ P + R G Q+ P +
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAE----RGVGMVFQSYALYPHL 90
Query: 796 TVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKR 854
+V E++ +F L+LA KE+ V +V ++++L L D P LS QR+R
Sbjct: 91 SVAENM---SFGLKLAG-AKKEEINQRVNQVAEVLQLAHLLDR---KP--KALSGGQRQR 141
Query: 855 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 53/244 (21%), Positives = 93/244 (38%), Gaps = 75/244 (30%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE----------FVPQKTSA 50
M LLGP +GKTTL+ LA G I +G + + ++PQ+
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGV 83
Query: 51 YISQNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATA 110
Y + TV+E LD+ A L + +E A +
Sbjct: 84 YPN--------FTVREFLDYIAW----------LKGIPSKEVKARV-------------- 111
Query: 111 MEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDE 170
D L+++ L +G +SGG ++RV + +VG L +DE
Sbjct: 112 ----------DEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDE 156
Query: 171 ISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFD------DIILLSEGQI 224
+ GLD + L ++ D +++S T + D + +L++G++
Sbjct: 157 PTAGLDPEERIRFRNLLSEL--GEDRIVILS-------THIVEDVESLCNQVAVLNKGKL 207
Query: 225 VYQG 228
V++G
Sbjct: 208 VFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 19/196 (9%)
Query: 737 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ-- 794
AL+G +G+GK+TL +L G EG+IR+ G P + +S + + Q
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRP-----LSSLSHSVLRQGVAMVQQD 423
Query: 795 -VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ESLKDAIVGLPGVTG--LSIE 850
V + ++ + A + L +++S E+++ E + L EL SL D + G G LS+
Sbjct: 424 PVVLADTFL--ANVTLGRDIS-EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480
Query: 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 910
Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S I
Sbjct: 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLST-I 538
Query: 911 FEAFDELLLLKRGGQV 926
EA D +L+L RG V
Sbjct: 539 VEA-DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
E KE + +L +++ F G + ++G SGAGK+TL+ ++ + EG I I
Sbjct: 5 EFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILI 62
Query: 769 SGFPKKQ----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEE 824
G K + +I +Q H + TVK+++ Y L+ K V E +
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQP--HLFEGTVKDNIEYGPMLKGEKNVDVE----YYLS 116
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
++ L + + +D V LS + +R++IA L NP ++ +DEPTS LD + I
Sbjct: 117 IVGLNKEYATRD-------VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEI 169
Query: 885 VMRTVRN 891
+ +
Sbjct: 170 IEELIVK 176
|
Length = 241 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 62/226 (27%), Positives = 91/226 (40%), Gaps = 50/226 (22%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHVGEM 62
LLGP GKTT L +AG G I G + + P+ A + QN M
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHM 87
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV + + F L R P+ EID E V
Sbjct: 88 TVYDNIAFG---------------LKLR-----KVPKDEID--------ERVRE------ 113
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
++L ++ + D + +SGGQ++RV G IV K MDE + LD+ Q
Sbjct: 114 VAELLQIEH-----LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ 168
Query: 183 I---VKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV 225
+ +K LQQ + T TI ++ Q E + D I ++++GQI
Sbjct: 169 MRAELKRLQQRLGTT--TIYVTHDQ--VEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-07
Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 60/235 (25%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQNDVHVG 60
L+GP +GKT+LL AL G L +G + NG L E P+ K +++ QN +
Sbjct: 381 LVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESWRKHLSWVGQNP-QLP 435
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEID-LFMKATAMEGVESSLI 119
T+++ + LL DA + ++ A E +
Sbjct: 436 HGTLRDNV--------------LLGN-----PDAS---DEQLQQALENAWVSEFLPLL-- 471
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
GLD T +GD+ G+S GQ +R+ ++ P + L +DE + LD+ +
Sbjct: 472 ------PQGLD----TPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
Query: 180 TYQIVKCLQQIVHVTDATILM------SLLQPAPETFDLFDDIILLSEGQIVYQG 228
+++ L T LM L Q +D I ++ +GQIV QG
Sbjct: 521 EQLVMQALNAASR--RQTTLMVTHQLEDLAQ--------WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 66/225 (29%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTL------MDVLAGRKTGGYIEGDIRISGFP 772
K + LN V+ F P + AL+G SG+GK+TL M+ L T I G I +G
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNG-- 71
Query: 773 KKQETFARISGYCEQNDIHSPQV---------------------TVKESLIYSAFLRLAK 811
++I+SP+ ++ E+++Y LRL
Sbjct: 72 ---------------HNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG--LRLKG 114
Query: 812 EVSKEDKIIFVEEVMDLVELESLKDAIVG-------LPGVTGLSIEQRKRLTIAVELVAN 864
+DK +V+D +SLK A + GLS Q++R+ IA L +
Sbjct: 115 I---KDK-----QVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATS 166
Query: 865 PSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIHQPS 907
P II +DEPTS LD +A + T+ D T V ++ Q S
Sbjct: 167 PKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 29/234 (12%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIRISGFPKKQET 777
L+ L+ V+ G A++G +G+GKTT ++ L G IE + KK +
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKE 79
Query: 778 FARISGYCEQNDIHSPQV----TVKE-----SLIYS-AFLRLAKEVSKEDKIIFVEEVMD 827
+ E+ I + +KE +++ A +L ++ ++D IIF M
Sbjct: 80 KEK---VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKD-IIFGPVSMG 135
Query: 828 LVELESLKDA-----IVGLP------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
+ + E+ K A +VGL LS Q++R+ +A L P + DEPT+G
Sbjct: 136 VSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAG 195
Query: 877 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
LD + ++ N G+T++ H +D + + + + G++I G
Sbjct: 196 LDPQGVKEILEIFDNLNKQGKTIILVTH--DLDNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 33/249 (13%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
R L +V G A +G +G+GK+T+M +L G +G +R+
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDT--------L 70
Query: 781 ISGYCEQNDIHSPQVTV------KESLIYS-------AFLRLAKEVSKEDKIIFVEEVMD 827
I+ + DI + V ES ++ AF VS+E+ E +
Sbjct: 71 ITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLA 130
Query: 828 LVEL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
LV + ESL + LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 131 LVGISESLFEK-----NPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM 185
Query: 887 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAI 946
+ +G T+V H D+ D + +L++G V+ P ++ + +++ E
Sbjct: 186 TLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLSGKP--KDIFQDVDFLEEK 242
Query: 947 P-GVPKIKE 954
GVPKI +
Sbjct: 243 QLGVPKITK 251
|
Length = 280 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
LL +++ G L L G +GAGKTTL+ ++AG +G+I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 782 SGYC---EQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
C ++ I +P +T++E+ +Y ++ + + E+ L LE L D
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
GL LS Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 899 VVCTIHQ 905
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-07
Identities = 59/258 (22%), Positives = 91/258 (35%), Gaps = 79/258 (30%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKV-RGEITYNG-------------YRLNEFVPQKTS 49
++G SGK+TL LAL G L ++ GE+ +G R
Sbjct: 40 IVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRI------ 93
Query: 50 AYISQ------NDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEID 103
A I Q N V ++E L + +R E
Sbjct: 94 AMIFQDPMTSLNPVMTIGDQIREA-------------LRLHGKGSRAE------------ 128
Query: 104 LFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPT 163
+ A+E L+ +GL D D +SGG ++RV +
Sbjct: 129 --ARKRAVE----------LLEQVGLP---DPERRDRYPHQLSGGMRQRVMIAMALALKP 173
Query: 164 KTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL------FDDII 217
K L DE +T LD +T QI+ L+ + +L T DL D ++
Sbjct: 174 KLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI-------THDLGVVAELADRVV 226
Query: 218 LLSEGQIVYQGPRERVLE 235
++ +G+IV GP E +L
Sbjct: 227 VMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 776
+ LL +++ G A++G +GAGK+TL+ +LAG + G + G +++ +
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-ELGP-LSGTVKVG--ETVK- 386
Query: 777 TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
GY +Q H ++ ++++ L E + V L
Sbjct: 387 -----IGYFDQ---HRDELDPDKTVL--EELS---EGFPDGDEQEVRAY-----LGRF-- 426
Query: 837 AIVGLPG------VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 427 ---GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-07
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 27/152 (17%)
Query: 738 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS----- 792
L+G SG GKTT++ ++AG +T G I + G + + E +++
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVFQSY 95
Query: 793 ---PQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLS 848
P +TV E++ AF LR+ K + V E + +V+LE LS
Sbjct: 96 ALFPHMTVFENV---AFGLRMQK-TPAAEITPRVMEALRMVQLEEFAQR-----KPHQLS 146
Query: 849 IEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
Q++R+ IA +V P ++ +DE S LD +
Sbjct: 147 GGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 50/229 (21%), Positives = 98/229 (42%), Gaps = 11/229 (4%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
EMK ++ L+ + RPG L G +GAGK+TLM +L+G G +G+I
Sbjct: 3 EMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW 62
Query: 769 SGFPKK----QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF-VE 823
SG P K ++T Q P+++V E++ + L + + +
Sbjct: 63 SGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAK 122
Query: 824 EVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
++ ++L++ V Q++ + IA L ++ +DEP+S L +
Sbjct: 123 NLLRELQLDADNVTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178
Query: 884 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932
I++ +R+ V C ++ +A + + + R GQ + + +
Sbjct: 179 ILLDIIRDL--KAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDM 225
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 33/163 (20%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETF 778
R+L++V+ +PG + L+G +GAGK+TL+ V+ G G I+ + ++
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL---------- 67
Query: 779 ARISGYCEQN---DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
RI GY Q D P +TV FLRL KED + + V+ L
Sbjct: 68 -RI-GYVPQKLYLDTTLP-LTVNR------FLRLRPGTKKED----ILPALKRVQAGHLI 114
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
DA P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 115 DA----P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 15/181 (8%)
Query: 737 ALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIRISGFPKKQETFARIS-----GYCEQN 788
ALMG SG GK+TL+ + L +EG++R+ G I G Q
Sbjct: 34 ALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY 93
Query: 789 DIHSPQVTVKESLIYSAFL-RLAKEVSKEDKIIFVEEVMDLVEL-ESLKDAIVGLPGVTG 846
P +T+ +++ L L K + D+ VE + L + +KD + P
Sbjct: 94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELDER--VEWALKKAALWDEVKDRLNDYPS--N 149
Query: 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 906
LS QR+RL IA L P I+ MDEPT+ +D A + + + T+V H P
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEYTIVLVTHSP 208
Query: 907 S 907
+
Sbjct: 209 A 209
|
Length = 253 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 51/244 (20%)
Query: 681 APKRGMVLPFTPL--AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAAL 738
AP LP PL + F+ V + P+ L+ + RPG AL
Sbjct: 323 APAHPKTLP-VPLRGEIEFEQVNFAYPARPDQP----------ALDGLNLTVRPGETVAL 371
Query: 739 MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV- 797
+G SGAGK+TL +L + G I + G +Q + ++ + V
Sbjct: 372 VGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQ---------LDPAELRARMALVP 420
Query: 798 KESLIYSAFLRLAKEVSKEDKIIF------VEEVMDLVELESLKDAIVGLP--------- 842
++ ++++A S + I + EEV + I LP
Sbjct: 421 QDPVLFAA--------SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGE 472
Query: 843 -GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 901
GVT LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ GRT +
Sbjct: 473 RGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRTTLI 530
Query: 902 TIHQ 905
H+
Sbjct: 531 IAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 852 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDI 910
++RL IA LV +P ++FMDEPT GLD A ++ +R V + G VV H D+
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH----DL 212
Query: 911 FEAFDELL----LLKRGGQVIYSG 930
A LL L+ + G+V+ SG
Sbjct: 213 --AVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 4e-07
Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 54/212 (25%)
Query: 730 FRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARISGYCEQ 787
G L A++G G+GK++L+ L G K G + + G I+ Y Q
Sbjct: 28 VPKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVSVPG---------SIA-YVSQ 73
Query: 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF--------VEEVM-------DLVELE 832
E I + +R + I+F E+V+ DL L
Sbjct: 74 -----------EPWIQNGTIR--------ENILFGKPFDEERYEKVIKACALEPDLEILP 114
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRTVRN 891
+G G+ LS Q++R+++A + ++ I +D+P S +DA I +
Sbjct: 115 DGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILG 173
Query: 892 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
+ +T + HQ + + D++++L G
Sbjct: 174 LLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 725 EVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK----TGGYIEGDIRISG---FPKKQET 777
+V P + A +G SG GK+T++ L R G +EG++ + G + +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80
Query: 778 FA--RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ESL 834
A R G Q P ++++++++ A L+L +K+D VE+ + L +
Sbjct: 81 VAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEV 138
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
KD + PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 139 KDRL-DKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 822 VEEVMDLVELESLKDAIVGLP---------GVTGLSIEQRKRLTIAVELVANPSIIFMDE 872
++E + + L + I +P G LS QR+RL IA LV P I+ DE
Sbjct: 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614
Query: 873 PTSGLDARAAAIVM 886
TS LD R AIV
Sbjct: 615 ATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 58/233 (24%), Positives = 90/233 (38%), Gaps = 51/233 (21%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHVGEM 62
LLGP GKTTLL LAG D G I +G + P + Q+ M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV+E + F + V P AEI K +E + + ++
Sbjct: 58 TVEENVAFGLKMRKV--------------------PRAEI----KPRVLEALRLVQLEEF 93
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
D +SGGQ++RV +V K L +DE + LD Q
Sbjct: 94 ---------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
Query: 183 I---VKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG-PRE 231
+ +K +Q+ + +T + ++ Q E + D I ++ +G+I G P E
Sbjct: 139 MQLELKTIQEQLGIT--FVFVTHDQ--EEAMTMSDRIAIMRKGKIAQIGTPEE 187
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-07
Identities = 57/241 (23%), Positives = 89/241 (36%), Gaps = 56/241 (23%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRL-----NEFVP--QKTSAYISQ 54
T L GP SGKT+L+ +AG D G I NG L F+P ++ Y+ Q
Sbjct: 27 TALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 55 NDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGV 114
+ TV+ L + + R + F + A+ G+
Sbjct: 84 DARLFPHYTVRGNLRYGM-------------WKSMRAQ------------FDQLVALLGI 118
Query: 115 ESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 174
E L D +SGG+K+RV G ++ + L MDE
Sbjct: 119 EHLL--------------------DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158
Query: 175 LDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
LD +I+ L+++ + IL E L D +++L G++ GP E V
Sbjct: 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVW 217
Query: 235 E 235
Sbjct: 218 G 218
|
Length = 352 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 40/231 (17%)
Query: 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPK 773
+ L V+ G A++G +G+GK+T+ +L G + G+I+I G
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITI 73
Query: 774 KQETFARIS---GYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
+E I G QN D TV++ + AF E+K + +++ D++
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDI---AF-------GLENKKVPPKKMKDII 123
Query: 830 ELESLKDAIVGLPGV-----TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+ + K VG+ LS Q++R+ IA L NP II DE TS LD +
Sbjct: 124 DDLAKK---VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180
Query: 885 V---MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLLKRGGQVIYSG 930
+ M +R T +T++ H D+ EA D++++ G++I G
Sbjct: 181 IKKIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 8e-07
Identities = 58/233 (24%), Positives = 99/233 (42%), Gaps = 55/233 (23%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSA---YISQNDVHVG 60
++G SGK+TLL LAG G + +G + + P Y+ Q DV +
Sbjct: 35 IIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLF 90
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
T+++ + A P A+ + ++A + GV T
Sbjct: 91 YGTLRDNITLGA-------------------------PLADDERILRAAELAGV-----T 120
Query: 121 DYTLKI-LGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
D+ K GLD +G E RG+SGGQ++ V ++ L +DE ++ +D ++
Sbjct: 121 DFVNKHPNGLD----LQIG-ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175
Query: 180 TYQIVKCLQQIVHVTDATIL----MSLLQPAPETFDLFDDIILLSEGQIVYQG 228
++ + L+Q++ I+ SLL DL D II++ G+IV G
Sbjct: 176 EERLKERLRQLL-GDKTLIIITHRPSLL-------DLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 56/244 (22%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYIS---QNDV 57
+T ++GP +GK+TLL ++ L +D GEIT +G L ++ + +S Q +
Sbjct: 29 ITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENH 85
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
+TV++ + F G FP ++ L T E
Sbjct: 86 INSRLTVRDLVGF------------------------GRFPYSQGRL----TK----EDR 113
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
I + ++ L L+ D + DE+ SGGQ++R ++ T + +DE LD
Sbjct: 114 RIINEAIEYLHLEDLSDRYL-DEL----SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL------FDDIILLSEGQIVYQGPRE 231
+ QI+K L+++ TI++ L D+ D I+ L G++V QG +
Sbjct: 169 KHSVQIMKILRRLADELGKTIVVVL-------HDINFASCYSDHIVALKNGKVVKQGSPD 221
Query: 232 RVLE 235
+++
Sbjct: 222 EIIQ 225
|
Length = 252 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 35/117 (29%)
Query: 134 DTIVGDEMNRG--ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ-- 189
DTIVG+ RG +SGG+K+RV I+ L +DE ++ LD+ T +I L+
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 190 -------IVH----VTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
I H + +A D II+L +G+IV +G E +L
Sbjct: 185 KGRTTIVIAHRLSTIVNA-----------------DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 8e-07
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 80/252 (31%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGE 61
T +LG +GK+TL L G L G I ++G
Sbjct: 35 TAILGGNGAGKSTLFQNLNGILK---PSSGRILFDG------------------------ 67
Query: 62 MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITD 121
+ +D+S + L + RE +F + + LF +S+ D
Sbjct: 68 ----KPIDYSRKGL-----------MKLRESVGMVFQDPDNQLF---------SASVYQD 103
Query: 122 YTLKILGLDICKDTI---VGDEMNR-GI-----------SGGQKKRVTTGEMIVGPTKTL 166
+ + L + +D + V + + R GI S GQKKRV ++V K L
Sbjct: 104 VSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163
Query: 167 FMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL------FDDIILLS 220
+DE + GLD +I+K L ++ TI+++ T D+ D++ ++
Sbjct: 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDIDIVPLYCDNVFVMK 216
Query: 221 EGQIVYQG-PRE 231
EG+++ QG P+E
Sbjct: 217 EGRVILQGNPKE 228
|
Length = 283 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 43/235 (18%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTL-------MDVLAGRKTGGYIEGDIRISGFPKK 774
+L V + +PG + G +G+GK++L +D+ G+ I+G I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDISKLPL- 90
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLR--LAKEVSKEDKIIFVEEVMDLVELE 832
+R+S + +++ +++S +R L E D + + + +E+
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTD-----DRLWEALEIA 133
Query: 833 SLKDAIVGLPG-----VT----GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
LK+ + LPG VT S+ QR+ +A V SI+ MDE T+ +D
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 884 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHK 938
I+ + V T RTVV H+ S I +A D +L+L RG V P + +
Sbjct: 194 ILQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRGILVECDTPENLLAQE 245
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 8e-07
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 42/215 (19%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIRISGFPKKQETFARISGYCE 786
PG + AL+G +GAGK+T+M VL G + G I ++ +G QE A I
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 787 QNDIHS-----PQVTVKESLIYSAFLRLAKE-VSKEDKIIFVEEVMDLVELESLKDAIVG 840
IH PQ+T+ E++ L +E V++ +I D ++ + D ++
Sbjct: 83 --IIHQELNLIPQLTIAENIF------LGREFVNRFGRI-------DWKKMYAEADKLLA 127
Query: 841 LPGVT--------GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
+ LSI +++ + IA L +I MDEPT L + R +R
Sbjct: 128 RLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL 187
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927
GR +V H+ +IFE D++ + R GQ I
Sbjct: 188 KSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 36/179 (20%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFPKKQ 775
D LR ++ ++ R G L+G SG+GK+TL G I +G+IR G
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDG 352
Query: 776 ETFARISGYCEQNDIH----------SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEV 825
+ + + + SP++TV + +I ++S ++ V E
Sbjct: 353 LSRKEMRPL--RRRMQVVFQDPYGSLSPRMTVGQ-IIEEGLRVHEPKLSAAERDQRVIEA 409
Query: 826 MDLVELESLKDAIVGLPGVT------GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
L E VGL T S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 410 --LEE--------VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 55/198 (27%), Positives = 78/198 (39%), Gaps = 70/198 (35%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISG----- 770
L ++T + + AL+G SG GK+TL+ D++ G + I GDI +G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGENIMD 77
Query: 771 ---------------------FPKK-QETFA---RISGYCEQNDIHSPQVTVKESLIYSA 805
FPK E A RI G + + + V++SL +A
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDT---IVEKSLKGAA 134
Query: 806 FLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865
+EV D L D+ + L G Q++RL IA L NP
Sbjct: 135 LW---------------DEVKD-----RLHDSALSLSG------GQQQRLCIARTLAVNP 168
Query: 866 SIIFMDEPTSGLDARAAA 883
+I MDEP S LD A A
Sbjct: 169 EVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 58/260 (22%), Positives = 95/260 (36%), Gaps = 60/260 (23%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKV-RGEITYNGYRLNEFVPQKTSAYISQNDVHVGEM 62
++GP SGK+TL + G + +V GEI ++G + E+
Sbjct: 35 IMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDG-------------------EDILEL 73
Query: 63 TVKE------TLDFS--ARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGV 114
+ E L F GV L + + R GI PE +L
Sbjct: 74 SPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKEL---------- 123
Query: 115 ESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 174
++LGLD + + +N G SGG+KKR ++++ K +DE +G
Sbjct: 124 ------KEKAELLGLD---EEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSG 174
Query: 175 LDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDII-----LLSEGQIVYQGP 229
LD + + + + ++++ Q L D I +L +G+IV G
Sbjct: 175 LDIDALKIVAEGINALREEGRGVLIITHYQ------RLLDYIKPDKVHVLYDGRIVKSGD 228
Query: 230 RERVLEFFESCGFCCPERKG 249
E E E E G
Sbjct: 229 PELAEELEEKGYDWLKEVVG 248
|
Length = 251 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 52/238 (21%), Positives = 95/238 (39%), Gaps = 47/238 (19%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSA------YISQNDV 57
+LG SGK+TLL + G L D +GEI +G + + ++ + Q
Sbjct: 39 ILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
+TV E + F R E + PE+ I +
Sbjct: 96 LFSSLTVFENVAFPLR------------EHTK-------LPESLIR----ELVLM----- 127
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
L+++GL D +SGG +KRV I + LF+DE ++GLD
Sbjct: 128 -----KLELVGLR----GAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDP 178
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+ I + ++++ T++M + + D + +L++G+++ +G E +L
Sbjct: 179 ISAGVIDELIRELNDALGLTVIM-VTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 54/242 (22%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHV 59
+ LLGP SGKTTLL +AG D G I + G + Q+ + ++ Q+
Sbjct: 30 LVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALF 86
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
MTV + + F R R PEAEI +A E
Sbjct: 87 RHMTVFDNVAFGLRVKPRSERP----------------PEAEI----RAKVHE------- 119
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
LK++ LD + D +SGGQ++RV + K L +DE LD+
Sbjct: 120 ---LLKLVQLD-----WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 180 TYQIVKCLQQI---VHVTDATILMSLLQPAPETFDLFDDIILLSEGQI--------VYQG 228
++ + L+++ +HVT T+ ++ Q E ++ D ++++++G+I VY
Sbjct: 172 RKELRRWLRRLHDELHVT--TVFVTHDQ--EEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
Query: 229 PR 230
P
Sbjct: 228 PA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 53/244 (21%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQNDV 57
+ +LGP +GK+TLL AL+G+L+ D GE+T NG LN + P+ + A + QN
Sbjct: 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSS 85
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
TV+E + G E +A + + AT + G+
Sbjct: 86 LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ--------------ALAATDLSGLAGR 131
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM------IVGPTKTLFMDEI 171
R +SGG+++RV + V + LF+DE
Sbjct: 132 DY-----------------------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEP 168
Query: 172 STGLDSSTTYQIVKCLQQIVHVTDATI-LMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230
++ LD + + ++ +Q+ A + ++ L A + D I+LL +G+++ G
Sbjct: 169 TSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQ---YADRIVLLHQGRVIASGSP 225
Query: 231 ERVL 234
+ VL
Sbjct: 226 QDVL 229
|
Length = 259 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 49/240 (20%)
Query: 5 LGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYIS---QN--DVHV 59
+G +GK+TLL A+AG L G+I +G + + K + ++ Q+
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
E+T++E L + G + L S L R + F +
Sbjct: 95 PELTIEENLALAES---RGKKRGLSSALNERRRS----------SFRE------------ 129
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
L LGL + + + D + +SGGQ++ ++ + P K L +DE + LD T
Sbjct: 130 ---RLARLGLGL--ENRLSDRIGL-LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKT 183
Query: 180 TYQIVKCLQQIVHVTDATILM---SLLQPAPETFDLFDDIILLSEGQIVY---QGPRERV 233
+++ +IV T LM ++ D + +I+L G+IV + +
Sbjct: 184 AEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRLIMLHSGKIVLDVTGEEKASL 239
|
Length = 263 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 18/193 (9%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP-----K 773
+ +++V+ + R G + + G+ GAG+T L+ L G G + EG++ I+G P
Sbjct: 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNP 330
Query: 774 KQETFARISGYCEQNDIHS--PQVTVKESLIYSAFLRLAK----EVSKEDKIIFVEEVMD 827
Q A I+ E H P + V +++ S + + E +II +
Sbjct: 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQII-GSAIQR 389
Query: 828 LVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
L +K A LP + LS +++ +A L+ NP ++ +DEPT G+D A + +
Sbjct: 390 L----KVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYK 444
Query: 888 TVRNTVDTGRTVV 900
+ G ++
Sbjct: 445 LINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 63/260 (24%), Positives = 111/260 (42%), Gaps = 51/260 (19%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDL---KVRGEITYNGYRLNEFVPQKTSAYISQNDV 57
+T L+GP GK+T L L ++N D+ K+ GEI + G N + + + +
Sbjct: 32 LTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQ--NIYGSKMDLVELRKE-- 86
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
VG M ++ F + + +A K AG+ + ID + VE S
Sbjct: 87 -VG-MVFQQPTPFP---------FSVYDNVAYGLKIAGVKDKELID--------QRVEES 127
Query: 118 LITDYTLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGEMIVGPTKTLFMDEISTG 174
L I K+T D ++R SGGQ++R+ + K + +DE ++
Sbjct: 128 LKQ--------AAIWKET--KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA 177
Query: 175 LDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
LD ++ +I + L ++ H ++ LQ A + D L G ++ GP E +
Sbjct: 178 LDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR---ISDQTAFLMNGDLIEAGPTEEM- 233
Query: 235 EFFESCGFCCPERKGTADFL 254
F P+++ T+D+L
Sbjct: 234 -------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 38/216 (17%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
L +T PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 781 ISGYCEQNDIHSPQVTV-KESLIYSAFLR--LAKEVSKEDKIIFVEEVMDLVELESLKDA 837
+ + +H V +E +++S +R +A ++ EE+M + + D
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD----EEIMAAAKAANAHDF 599
Query: 838 IVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
I+ P G G LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 600 IMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQL 655
Query: 889 VRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 923
++ + RTV+ H+ S E D++L+LK+G
Sbjct: 656 LQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 24/186 (12%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQN-- 788
RPG + ++G +G GK+T + +LAG + P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQNYF 153
Query: 789 ---------DIHSPQVTVKESLIYSAFLRLAKE-VSKEDKIIFVEEVMDLVELESLKDAI 838
+H PQ LI E + K D+ +EV++ + LE++ D
Sbjct: 154 KKLYEGELRAVHKPQYV---DLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDR- 209
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
V+ LS + +R+ IA L+ + + F DEP+S LD R R +R + G+
Sbjct: 210 ----DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKY 265
Query: 899 VVCTIH 904
V+ H
Sbjct: 266 VIVVEH 271
|
Length = 591 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 1e-06
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 13/189 (6%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVL--AGRKTGGY-IEGDIRISGFP----KK 774
+L++V+ F + +LMG +G+GKTT + L K GY GD+ + G +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEV-SKEDKIIFVEEVMDLVELES 833
F R G Q P + L A +R K V KE + + + ++ ++
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVL---AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
+KD + P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 894 DTGRTVVCT 902
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 64/291 (21%), Positives = 107/291 (36%), Gaps = 65/291 (22%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-- 766
E+K D +L ++ G + ++G SGAGK+ LM VL G G I
Sbjct: 2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61
Query: 767 RISGFPKKQETFARISGYCEQNDIHS------PQVTVKESLIYSAFLRLAK----EVSKE 816
++ K C + S P F L+ + K
Sbjct: 62 HVALCEK-----------CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKR 110
Query: 817 DKIIFV--------EEVMDLVELESLKDAIVGLPGVTG---------------------- 846
I+ + V+D V LE+L++ G G
Sbjct: 111 IAIMLQRTFALYGDDTVLDNV-LEALEEI--GYEGKEAVGRAVDLIEMVQLSHRITHIAR 167
Query: 847 -LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 904
LS +++R+ +A +L P + DEPT LD + A +V + V +G ++V T H
Sbjct: 168 DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227
Query: 905 QPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIE-YYEAIPGVPKIKE 954
P + I + D+ + L+ G++ G +V+ + E + V K E
Sbjct: 228 WPEV-IEDLSDKAIWLEN-GEIKEEG----TPDEVVAVFMEGVSEVEKECE 272
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 66/234 (28%), Positives = 101/234 (43%), Gaps = 30/234 (12%)
Query: 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 769
M+ VA RL +++ R G + L+G +GAGK+TL+ +AG G G I+ +
Sbjct: 1 MQLNDVAVST-RLG-PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 770 GFPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVM 826
G P + AR Y Q + V + L L + E + EV
Sbjct: 56 GQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVA 111
Query: 827 DLVELESLKDAIVGLP-GVTGLS-IE-QRKRLTIAVEL----VANPS--IIFMDEPTSGL 877
+ + L+ L V LS E QR RL AV L NP+ ++ +DEP + L
Sbjct: 112 EALGLDDK------LGRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSL 164
Query: 878 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
D A + R + G VV + H + + A D + LLK+ G+++ SG
Sbjct: 165 DVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA-DRVWLLKQ-GKLLASGR 216
|
Length = 248 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 54/228 (23%), Positives = 86/228 (37%), Gaps = 47/228 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGY---RLNEFVPQKTSAYISQNDVHVG 60
LLGP +GKTT + L L G T G+ R V ++ + Q+
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREV-RRRIGIVFQDLSVDD 86
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
E+T E L AR GV E R
Sbjct: 87 ELTGWENLYIHARLYGVPGA-----ERRER-----------------------------I 112
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
D L +GL D +V + SGG ++R+ +V + LF+DE + GLD T
Sbjct: 113 DELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+ + ++++ TIL++ E L D + ++ G+I+ +G
Sbjct: 168 AHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 53/249 (21%), Positives = 85/249 (34%), Gaps = 80/249 (32%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE--------------FVPQKTS 49
L+G SGK+TL A+ G L + G I ++G L + V Q
Sbjct: 36 LVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQ--D 90
Query: 50 AYISQNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKAT 109
S N MT+ E + R G ++ E E
Sbjct: 91 PMSSLNPR----MTIGEQIAEPLRIHGKLSKKEARKEAVLLL------------------ 128
Query: 110 AMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI-----VGPTK 164
+ GV V + +SGGQ++RV I + P K
Sbjct: 129 -LVGVGL-----------------PEEVLNRYPHELSGGQRQRV----AIARALALNP-K 165
Query: 165 TLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILM-----SLLQPAPETFDLFDDIILL 219
L DE ++ LD S QI+ L+++ T+L ++ + D + ++
Sbjct: 166 LLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVA------KIADRVAVM 219
Query: 220 SEGQIVYQG 228
G+IV +G
Sbjct: 220 YAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 60/252 (23%), Positives = 103/252 (40%), Gaps = 52/252 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHVGEM 62
+LGP SGK+ LL +AG + D G+I NG + P+K +Y+ QN M
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHM 86
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV + + + G+ R E+ R+ EI M G++ L
Sbjct: 87 TVYKNIAY-----GLKKRKVDKKEIERKVL--------EI------AEMLGIDHLL---- 123
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
+ +SGG+++RV +V K L +DE + LD T +
Sbjct: 124 ----------------NRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEK 167
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
+ + L++I T+L + E + L D + ++ G+++ G E V +
Sbjct: 168 LREELKKIRKEFGVTVL-HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK------- 219
Query: 243 CCPERKGTADFL 254
P+ + A+FL
Sbjct: 220 -KPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 42/178 (23%), Positives = 65/178 (36%), Gaps = 46/178 (25%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGE 61
+L GP SGKTTLL +AG L G I +G +++ + Y+ +
Sbjct: 31 LVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPA 87
Query: 62 MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITD 121
+TV E L+F A LG ++ I A A+E V + +
Sbjct: 88 LTVAENLEFWAAFLG--------------GEELDI-----------AAALEAVGLAPLAH 122
Query: 122 YTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
L S GQK+RV ++V +DE + LD++
Sbjct: 123 LPFGYL------------------SAGQKRRVALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 41/240 (17%)
Query: 712 EQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDI 766
++GV ++ ++ V+ + G + ++G SGAGKTTL ++AG T G + GD
Sbjct: 293 DRGV----VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDE 348
Query: 767 RISGFPKKQETFARISGYC----EQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKII-- 820
+ + R Y ++ D++ P TV ++L + L L E+++ +I
Sbjct: 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPDELARMKAVITL 407
Query: 821 ----FVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
F EE + + L+ D LS +R R+ +A L+ P I+ +DEPT
Sbjct: 408 KMVGFDEEKAEEI-LDKYPDE---------LSEGERHRVALAQVLIKEPRIVILDEPTGT 457
Query: 877 LDARAAAIVMRTVRNTV-----DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+D I V +++ + +T + H +D + L R G+++ G
Sbjct: 458 MD----PITKVDVTHSILKAREEMEQTFIIVSH--DMDFVLDVCDRAALMRDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 41/207 (19%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI-- 790
G + L+G SG GKTT++ ++AG + EG I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 791 --HS----PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGV 844
S P +++ E++ Y L++ V KE++ V+E ++LV+L +D V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 899
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 900 VCTIHQPSIDIFEAF---DELLLLKRG 923
+ H S EAF D ++++ +G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 49/201 (24%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI 790
+ G AL+G SG+GK+TL+ + GD+
Sbjct: 26 KQGEKIALLGRSGSGKSTLL---------QLLTGDL----------------------KP 54
Query: 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850
++T+ + L+ +S ++ ++ D +L G S
Sbjct: 55 QQGEITLDGVPVSDLEKALSSLISVLNQRPYL---FDTTLRNNL-----GRR----FSGG 102
Query: 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV-CTIHQPSID 909
+R+RL +A L+ + I+ +DEPT GLD ++ + V +T++ T H I
Sbjct: 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKDKTLIWITHHLTGI- 160
Query: 910 IFEAFDELLLLKRGGQVIYSG 930
E D++L L+ G++I G
Sbjct: 161 --EHMDKILFLEN-GKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 25/202 (12%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG--------- 770
+L V+ G + +++G SG+GK+T + + + G IR++G
Sbjct: 19 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRVNGEEIRLKRDK 76
Query: 771 ----FPKKQETFARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVE 823
P + R+ G Q+ +TV E++I + L VSK + I E
Sbjct: 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG--VSKAEAIERAE 134
Query: 824 EVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
+ + V + DA P LS Q++R+ IA L P ++ DEPTS LD
Sbjct: 135 KYLAKVGIAEKADA---YPAH--LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVG 189
Query: 884 IVMRTVRNTVDTGRTVVCTIHQ 905
V++ +++ + GRT+V H+
Sbjct: 190 EVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 66/254 (25%), Positives = 111/254 (43%), Gaps = 33/254 (12%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
E+++ V+ ++ +L+ V + ALMG SG+GK+TL+ V R Y E +
Sbjct: 5 EIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSG 63
Query: 769 SGFPKKQETFA--------RISGYCE-QNDIHSPQVTVKESLIYSAFL-RLAKEVSKEDK 818
+ Q+ F R+ + N I P +++ E++ L RL K SK++
Sbjct: 64 EVYLDGQDIFKMDVIELRRRVQMVFQIPNPI--PNLSIFENVALGLKLNRLVK--SKKEL 119
Query: 819 IIFVEEVMDLVEL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877
V ++ +L + +KD + G LS Q++RL IA L P ++ DEPT+ L
Sbjct: 120 QERVRWALEKAQLWDEVKDRLDAPAG--KLSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 878 DARAAAIVMRTVRNTVDTGRTVVCTIHQPS----IDIFEAFDELLLLKRGGQVIYSGP-- 931
D A + ++ + T+V H P I + AF GQ++ GP
Sbjct: 178 DPENTAKI-ESLFLELKKDMTIVLVTHFPQQAARISDYVAF------LYKGQIVEWGPTR 230
Query: 932 --LGRNSHKVIEYY 943
H++ E Y
Sbjct: 231 EVFTNPRHELTEKY 244
|
Length = 250 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATIL----- 199
+SGGQK+RV + K L DE ++ LD TT I+ L+ I TI+
Sbjct: 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200
Query: 200 MSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
M +++ + D + ++ +G++V +G E V
Sbjct: 201 MEVVK------RICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 48/214 (22%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L +++ +F PG ++G++GAGK+TL+ ++AG G+ R + K
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FNGEARPAPGIK-------- 69
Query: 782 SGYCEQNDIHSPQVTVKESL----------------IYSAFL-------RLAKEVSK-ED 817
GY Q P TV+E++ I + F L E ++ ++
Sbjct: 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQE 129
Query: 818 KIIFVEEVMDLVELES-LKDAIVGL---PG---VTGLSIEQRKRLTIAVELVANPSIIFM 870
I + D +L+ L+ A+ L P VT LS +R+R+ + L++ P ++ +
Sbjct: 130 II----DAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLL 185
Query: 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 904
DEPT+ LDA + A + + ++ G TVV H
Sbjct: 186 DEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 27/218 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
+ +V+ +PG A++G +GAGK+TL+++L ++ G I I G I
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDG--------TDIR 400
Query: 783 GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVM---------DLVELES 833
+ + V +++ +++ + V + D EE+ D +E +
Sbjct: 401 TVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDAT--DEEMRAAAERAQAHDFIERKP 458
Query: 834 LK-DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
D +VG G LS +R+RL IA L+ +P I+ +DE TS LD A V + +
Sbjct: 459 DGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL-DE 516
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ GRT H+ S + A D +L+ G+V+ SG
Sbjct: 517 LMKGRTTFIIAHRLST-VRNA-DRILVFDN-GRVVESG 551
|
Length = 588 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 12/186 (6%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
L VT RPG +A L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 780 RIS-GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
R G Q+ TV +++ A + S +D V +D V L D
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNV---AIPLIIAGASGDDIRRRVSAALDKV---GLLDKA 131
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
P LS +++R+ IA +V P+++ DEPT LD + ++R G T
Sbjct: 132 KNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVT 189
Query: 899 VVCTIH 904
V+ H
Sbjct: 190 VLMATH 195
|
Length = 222 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 54/190 (28%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISGFPKKQ 775
L + + AL+G SG GK+TL+ D++ G + IEG + G
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDG----- 67
Query: 776 ETFARISGYCEQNDIHSPQVTVKE----------------SLIYS--AF-LRLAKEVSKE 816
DI+ ++ V E IY A+ RL K+
Sbjct: 68 ------------QDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKK 115
Query: 817 --DKIIFVEEVMDLVEL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873
D+I VEE + L + +KD + GLS Q++RL IA L P ++ +DEP
Sbjct: 116 ELDEI--VEESLKKAALWDEVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEP 171
Query: 874 TSGLDARAAA 883
TS LD A
Sbjct: 172 TSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 4e-06
Identities = 58/247 (23%), Positives = 88/247 (35%), Gaps = 57/247 (23%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ------KTSAYISQN 55
++GP SGK+TLL + G L D GE+ +G ++ + + Q+
Sbjct: 29 LAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQS 85
Query: 56 DVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVE 115
+TV E + F L RE E EI +E
Sbjct: 86 GALFDSLTVFENVAF------------PL-----REH--TRLSEEEIR----EIVLE--- 119
Query: 116 SSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 175
L+ +GL D +SGG KKRV + + L DE + GL
Sbjct: 120 -------KLEAVGL-----RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGL 167
Query: 176 DSSTTYQIVKCLQQIVHVTDATILM---SLLQPAPETFDLFDDIILLSEGQIVYQGPRER 232
D + I ++ + T +M L F + D I +L +G+IV +G E
Sbjct: 168 DPIASGVIDDLIRSLKKELGLTSIMVTHDL----DTAFAIADRIAVLYDGKIVAEGTPE- 222
Query: 233 VLEFFES 239
E S
Sbjct: 223 --ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVL--------AGRKTGGYIEGDIRISGFPKK 774
+ +V+ F + A++G SG GK+T++ + + R TG + D I
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ES 833
+ R G Q P +++ +++I A +L V++ + VE + V L +
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
+KD + LS Q++RL IA + P +I MDEP S LD
Sbjct: 138 VKDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
+L++ ++ P LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 79 TLREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-- 135
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925
+ G TV+ H+PS+ F D +L L G
Sbjct: 136 -ELGITVISVGHRPSLWKF--HDRVLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 12/105 (11%)
Query: 140 EMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATIL 199
E ISGGQK+R+ ++ +K L +DE ++ LD+ T +IV L +++ D TI+
Sbjct: 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL---LNLQDKTII 663
Query: 200 M--SLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE---FFES 239
L A ++ D II+L G+I+ QG + +L+ F+ S
Sbjct: 664 FVAHRLSVAKQS----DKIIVLDHGKIIEQGSHDELLDRNGFYAS 704
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 17/219 (7%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTT----LMDVLAGRKTGGYIEGDIRISGFPKKQET 777
L+ ++ + + G + AL+G SG+GK+ ++ +L T G+I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 778 F-ARISGYCEQNDIHS--PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
R QN + P T+ I + LR ++SK+ + + +E ++ V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQARALILE-ALEAVGLPDP 115
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 893
++ + P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932
G ++ H + + DE+ ++ G+++ G +
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 49/180 (27%), Positives = 72/180 (40%), Gaps = 27/180 (15%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIH 791
G + G +GAGKTTL+ VLAG G I+I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 792 SPQVTVKESLIYSAFL--RLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG-----V 844
++ E+L + L R AK ++ AIVGL G V
Sbjct: 94 KADLSTLENLHFLCGLHGRRAK------------------QMPGSALAIVGLAGYEDTLV 135
Query: 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 904
LS Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 136 RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 32/222 (14%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIR-ISGFPKKQ--ET 777
+N+ + G + +MG+SG+GK+TL+ +L T G I D + I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 778 FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
+ Q+ P TV E++ + L + V K ++ E ++LV LE D
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFG--LEVQG-VPKAEREERALEALELVGLEGYADK 160
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRN 891
LS ++R+ +A L +P I+ MDE S LD ++RT +
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLEL 210
Query: 892 TVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSG 930
+T+V H D+ EA D + ++K G+++ G
Sbjct: 211 QAKLKKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 52/259 (20%), Positives = 108/259 (41%), Gaps = 44/259 (16%)
Query: 4 LLGPPSSGKTTLL---LALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
L+GP SGK+T+L + L ++V GE Y+ +P + + ++ H+
Sbjct: 31 LIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH-------MPGRNGPLVPADEKHLR 83
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEI--DLFMKATAMEGVESSL 118
+M K +G ++ + +FP + ++ + G+ +
Sbjct: 84 QMRNK-----------IGMVFQSFN----------LFPHKTVLDNVTEAPVLVLGMARAE 122
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
+++L + D D M +SGGQ++RV + K + DE+++ LD
Sbjct: 123 AEKRAMELLDMVGLADKA--DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 179 TTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
+++ ++++ D T+L+ + + D + +G+IV QG + E F
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDKGRIVEQGKPD---EIFR 236
Query: 239 SCGFCCPERKGTADFLQEV 257
P+ + T +FL +V
Sbjct: 237 Q-----PKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 5e-06
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSL-- 202
+SGG+++RV + L +DE ++ LD + ++++ L+++ T++M L
Sbjct: 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157
Query: 203 LQPAPETFDLFDDIILLSEGQIVYQG 228
L A D +ILL +G+IV QG
Sbjct: 158 LNLA---ARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 5e-06
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGY---RLNEFVPQKTSAYISQNDVHVG 60
LLGP +GKTTL+ + G L D GEI G + E V ++ Y+ +
Sbjct: 31 LLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEVKRRI-GYLPEEPSLYE 86
Query: 61 EMTVKETLDFS 71
+TV+E L S
Sbjct: 87 NLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 5e-06
Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 67/231 (29%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+ ++GP SGK++LL AL G+L K+ G ++ G + +V Q +I QN
Sbjct: 33 LVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-SIA-YVSQ--EPWI-QNG---- 80
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
T++E + F G ++ R + +KA A L
Sbjct: 81 --TIRENILF-------GKPFD-----EERYEKV-----------IKACA-------LEP 108
Query: 121 DYTLKIL-GLDICKDTIVGDEMNRGI--SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
D L+IL D T +G+ +GI SGGQK+R++ + +D+ + +D+
Sbjct: 109 D--LEILPDGD---LTEIGE---KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160
Query: 178 STTYQIV-KCLQQIVHVTDATIL----MSLLQPAPETFDLFDDIILLSEGQ 223
I C+ ++ IL + LL A D I++L G+
Sbjct: 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 28/204 (13%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG--------- 770
L +L+ + + G AL+G SG+GK+T++ +L + EG I++ G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 771 ----FPKKQETFARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLA-KEVSKEDKIIFV 822
P ++ ++ G Q+ P TV +++ + L L E + +
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAM-- 128
Query: 823 EEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 882
E++D+V L D +P LS Q++R+ IA L P ++ DE TS LD
Sbjct: 129 -ELLDMVGLADKADH---MP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 883 AIVMRTVRN-TVDTGRTVVCTIHQ 905
V+ +R + T++ H+
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 59/241 (24%), Positives = 103/241 (42%), Gaps = 21/241 (8%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPKKQETFA 779
L+ V G L+G +G+GK+TL+ L G +G I + I+ K
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 780 RISGYCEQNDIHSPQVTVKESLIYS--AFLRLAKEVSKEDKIIFVEEVMDLVEL--ESLK 835
+ G Q P+ + E I AF + +S+E+ V+ M++V L E K
Sbjct: 83 KKVGLVFQ----YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK 138
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
D LS Q++R+ IA + P I+ +DEPT+GLD + ++ ++
Sbjct: 139 DK-----SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193
Query: 896 -GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIP-GVPKIK 953
T++ H S++ + +++ G+ G R K +E E+I VP++
Sbjct: 194 YNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGTP-REVFKEVETLESIGLAVPQVT 250
Query: 954 E 954
Sbjct: 251 Y 251
|
Length = 287 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 5e-06
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 23/210 (10%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISGFPKKQETFAR 780
L + G AL+G SG+GK+T+ ++L T Y EG+I + G + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 781 ISGYC---EQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEV---MDLVE-LES 833
+ QN +H T+ ++ Y+ ++ S+E I + MD + +++
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYAR----TEQYSREQ-IEEAARMAYAMDFINKMDN 468
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
D ++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 469 GLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DEL 526
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923
RT + H+ S E DE+L+++ G
Sbjct: 527 QKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 30/203 (14%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG----------- 770
+L V+ G + +++G SG+GK+T + + + EG I ++G
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGSIVVNGQTINLVRDKDG 77
Query: 771 ----FPKKQETF--ARISGYCEQNDIHSPQVTVKESLIYSAF--LRLAKEVSKEDKIIFV 822
K Q R++ + ++ S +TV E+++ + L L+K+ ++E + ++
Sbjct: 78 QLKVADKNQLRLLRTRLTMVFQHFNLWS-HMTVLENVMEAPIQVLGLSKQEARERAVKYL 136
Query: 823 EEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 882
+V + E K + LS Q++R++IA L P ++ DEPTS LD
Sbjct: 137 AKV-GIDERAQGKYPV-------HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
Query: 883 AIVMRTVRNTVDTGRTVVCTIHQ 905
V+R ++ + G+T+V H+
Sbjct: 189 GEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKK 774
+ ++LN+++ G + AL+G SG+GKTTL+ ++AG +T G+I +S +
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELES 833
R G+ Q+ +TV +++ AF L + + + +V L+E+
Sbjct: 73 D----RKVGFVFQHYALFRHMTVFDNI---AFGLTVLPRRERPNAAAIKAKVTQLLEMVQ 125
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
L P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 126 LAHLADRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 55/213 (25%), Positives = 90/213 (42%), Gaps = 59/213 (27%)
Query: 706 MPPEMKEQGVA---EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAG 755
+M+ + V+ +K + L +V + A +G SG GK+T + D + G
Sbjct: 16 TEIKMRARDVSVFYGEK-QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG 74
Query: 756 RKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQV-------------------- 795
+ + G I + G DI+ P++
Sbjct: 75 CR----VTGKITLDG-----------------EDIYDPRLDVVELRARVGMVFQKPNPFP 113
Query: 796 -TVKESLIYSAFLR-LAKEVSKEDKIIFVEEVMDLVEL-ESLKDAIVGLPGVTGLSIEQR 852
++ E++ Y + LA+ ++ D+I VE + L E +KD + PG TGLS Q+
Sbjct: 114 KSIYENVAYGPRIHGLARSKAELDEI--VETSLRKAGLWEEVKDRL-HEPG-TGLSGGQQ 169
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
+RL IA + +P +I MDEP S LD A A V
Sbjct: 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 58/240 (24%), Positives = 86/240 (35%), Gaps = 72/240 (30%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE----------FVPQKTSAYIS 53
LLGP +GKTT L LAG L D G T +G+ + + FV T Y
Sbjct: 36 LLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLY-- 90
Query: 54 QNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLF-MKATAME 112
+T +E L++ A G L E A + E D M+
Sbjct: 91 ------DRLTARENLEYFAGLYG----------LKGDELTARL--EELADRLGMEELLDR 132
Query: 113 GVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEIS 172
V G S G +++V +V L +DE +
Sbjct: 133 RVG----------------------------GFSTGMRQKVAIARALVHDPPVLLLDEPT 164
Query: 173 TGLDSSTTYQIVKCLQQIVHVTDA--TILMS--LLQPAPETFDLFDDIILLSEGQIVYQG 228
TGLD T + + I + IL S ++Q L D +++L G++VY+G
Sbjct: 165 TGLDVMATRAL---REFIRQLRALGKCILFSTHIMQEVER---LCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATIL----- 199
+SGGQK+RV + K L DE ++ LD TT I++ L+ I TI+
Sbjct: 142 LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE 201
Query: 200 MSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGFCCPERKGTADFLQEVTS 259
M +++ + D + +L +G++V +G V E F + P+ T +F+ E
Sbjct: 202 MEVVK------RICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
Query: 260 RKDQEQY 266
E+
Sbjct: 248 IDLPEEL 254
|
Length = 339 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 7e-06
Identities = 54/251 (21%), Positives = 93/251 (37%), Gaps = 61/251 (24%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS----AYISQND 56
+ LLG +GKTTLL + G + G I ++G + P + + AY+ +
Sbjct: 31 IVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDGEDITGLPPHERARLGIAYVPEGR 87
Query: 57 VHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116
+TV+E L LG R + ++ E+ +FP
Sbjct: 88 RIFPRLTVEENLL-----LGAYARRDKEAQERDLEEVYELFPR----------------- 125
Query: 117 SLITDYTLKILGLDICKDTIVGDEM--NRG--ISGGQKKRVTTGEMIVGPTKTLFMDEIS 172
LK E R +SGG+++ + ++ K L +DE S
Sbjct: 126 -------LK--------------ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164
Query: 173 TGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP--- 229
GL +I + ++++ TIL+ + Q A ++ D +L G+IV G
Sbjct: 165 EGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAE 223
Query: 230 ---RERVLEFF 237
V E +
Sbjct: 224 LLADPDVREAY 234
|
Length = 237 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-06
Identities = 60/243 (24%), Positives = 93/243 (38%), Gaps = 58/243 (23%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE-----FVP--QKTSAYISQ 54
T + G SGKTTL+ +AG D GEI NG L + F+P ++ Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82
Query: 55 NDVHVGEMTVKETLDFS-ARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEG 113
++V+ L + R R + I E I+L
Sbjct: 83 EARLFPHLSVRGNLRYGMKRA---------------RPSERRISFERVIEL--------- 118
Query: 114 VESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 173
LG+ + G +SGG+K+RV G ++ + L MDE
Sbjct: 119 -------------LGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLA 160
Query: 174 GLDSSTTYQIVKCLQQIVHVTDATILM--SLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231
LD Y+I+ L+++ IL LQ E L D +++L +G++ GP
Sbjct: 161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGPIA 217
Query: 232 RVL 234
V
Sbjct: 218 EVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 50/229 (21%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-QKTSAYISQNDVHVGEM 62
++GP +GK+TLL +AG + G I N P Q+ + + Q + +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV++ + G+ P L + A E V
Sbjct: 86 TVRQNIGL------------------------GLHP----GLKLNAEQQEKVV------- 110
Query: 123 TLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
D + + D ++R +SGGQ++RV +V P L +DE + LD
Sbjct: 111 -------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL 163
Query: 180 TYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+++ ++Q+ T+LM + + + I ++S+G+I
Sbjct: 164 REEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 7e-06
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIRISGFPKKQETFA 779
L+ + G + ++G SG+GK+TL+ + L +G I ++++ PK E
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDERLI 75
Query: 780 RI-SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
R +G Q P +T E++++ + SKE+ E++ V L
Sbjct: 76 RQEAGMVFQQFYLFPHLTALENVMFGP--LRVRGASKEEAEKQARELLAKVGLAERAHH- 132
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
P LS Q++R+ IA L P ++ DEPTS LD V++ +++ + G T
Sbjct: 133 --YPS--ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMT 188
Query: 899 VVCTIHQ 905
+V H+
Sbjct: 189 MVIVTHE 195
|
Length = 240 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 17/188 (9%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIR-ISGFPKKQ 775
K++ L+EV+ G + L+G +GAGKTTL+ L G R T G I D + I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
++ E + S ++TV+E+L F ++ ++ V +L L
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGFF-----AERDQFQERIKWVYEL--FPRLH 128
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 129 ERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIEQ 182
Query: 896 GRTVVCTI 903
R TI
Sbjct: 183 LREQGMTI 190
|
Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
DTIVG E G+SGGQ++R+ ++ + L DE ++ LD + + I++ + I
Sbjct: 129 DTIVG-EQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAG 187
Query: 194 TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
I+ L T D II++ +G+IV QG + +L
Sbjct: 188 RTVIIIAHRLS----TVKNADRIIVMEKGRIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 69/253 (27%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG--------YRLNE----FVPQKTSAY 51
++G SGKTTLL ++G+L D G +TY Y ++E + + +
Sbjct: 37 IVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGF 93
Query: 52 ISQNDVHVGEMTVKETLDFSARCLGVGTR-YELLSELARREKDAGIFPEAEIDLFMKATA 110
+ QN M V + R + +G R Y + A+ E EIDL
Sbjct: 94 VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQD-----WLEEVEIDL------ 142
Query: 111 MEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDE 170
D I D++ R SGG ++R+ +V + +FMDE
Sbjct: 143 -----------------------DRI--DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDE 177
Query: 171 ISTGLDSSTTYQIVKCLQQIVH--------VTDATILMSLLQPAPETFDLFDDIILLSEG 222
+ GLD S +++ L+ +V VT + LL D ++++ +G
Sbjct: 178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA---------DRLMVMKQG 228
Query: 223 QIVYQGPRERVLE 235
Q+V G +RVL+
Sbjct: 229 QVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 8e-06
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 25/184 (13%)
Query: 730 FRPGVLAALMGVSGAGKTTLMDVLAG---RKTGGYIEG--DIRISGFPKKQETFARISGY 784
F + A +G +GAGKTT + +L G +G + G DI + +Q G
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL-----GM 1007
Query: 785 CEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGV 844
C Q++I +TV E +++ A L K S E+ + +E +++ L ++
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQL---KGRSWEEAQLEMEAMLEDTGLHHKRNE-----EA 1059
Query: 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVC 901
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIM 1115
Query: 902 TIHQ 905
+ H
Sbjct: 1116 STHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 49/207 (23%), Positives = 93/207 (44%), Gaps = 17/207 (8%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
E+K + ++ +L + + G + A+MG +G+GK+TL V+AG +EGDI
Sbjct: 9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF 68
Query: 769 SG---FPKKQETFARISGYCE-QNDIHSPQVTVKESLIYSAFLRLA-------KEVSKED 817
G + E A + + Q I P V+ + FLRLA + + + D
Sbjct: 69 KGESILDLEPEERAHLGIFLAFQYPIEIPGVSNAD------FLRLAYNSKRKFQGLPELD 122
Query: 818 KIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877
+ F+E + + ++L + + + G S ++KR I + + + +DE SGL
Sbjct: 123 PLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGL 182
Query: 878 DARAAAIVMRTVRNTVDTGRTVVCTIH 904
D A I+ + + + +++ H
Sbjct: 183 DIDALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-06
Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 23/209 (11%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIRISGFPKKQETFA 779
LN+V+ + G +++G +G+GK+T + R G +E G I I G +E
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 780 RIS---GYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
I G QN D TV++ + AF K + E+ V E ++LV ++ K
Sbjct: 78 DIRHKIGMVFQNPDNQFVGATVEDDV---AFGLENKGIPHEEMKERVNEALELVGMQDFK 134
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
+ P LS Q++R+ IA + P II +DE TS LD +++T++ D
Sbjct: 135 ER---EP--ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189
Query: 896 -GRTVVCTIHQPSIDIFEAFDELLLLKRG 923
TV+ H +D D +L++K G
Sbjct: 190 YQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 9e-06
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 776
E + LN V+ + G +++G +G+GK+T ++ G EG ++I G E
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAE 74
Query: 777 T---FARISGYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
R G QN D TV++ + AF + + +E+ I V+E + V +
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDV---AFGMENQGIPREEMIKRVDEALLAVNML 131
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
K LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 132 DFKTR-----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927
+ + V +I +D + D +L++ + G++I
Sbjct: 187 KEKYQLTVLSITH-DLDEAASSDRILVM-KAGEII 219
|
Length = 277 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 29/161 (18%)
Query: 737 ALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISGFPKKQETFARIS------- 782
AL+G SG GK+TL+ D++ G K I G + + G ++ + I
Sbjct: 33 ALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDG----EDIYGNIDVADLRIK 84
Query: 783 -GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ESLKDAIVG 840
G Q P +++ E++ Y + K+ D++ VE + L + +KD +
Sbjct: 85 VGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEV--VERSLRGAALWDEVKDRLKS 141
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 142 H--AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 55/241 (22%), Positives = 94/241 (39%), Gaps = 53/241 (21%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGY--------RLNEFVPQKTSAYI 52
++GP +GK+TLL + +L G I G +L + ++ I
Sbjct: 30 FVAIIGPSGAGKSTLLRCI-NRLVEP--SSGSILLEGTDITKLRGKKLRKL--RRRIGMI 84
Query: 53 SQNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAME 112
Q+ + +TV E + R +G + S L G F E + K A+
Sbjct: 85 FQHYNLIERLTVLENV-LHGR---LGYKPTWRSLL-------GRFSEED-----KERALS 128
Query: 113 GVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEIS 172
+E + D + D++ SGGQ++RV + + DE
Sbjct: 129 ALERVGLADKAYQ-----------RADQL----SGGQQQRVAIARALAQQPDLILADEPI 173
Query: 173 TGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL----FDDIILLSEGQIVYQG 228
LD T+ Q++ L++I T++++L Q DL D I+ L G+IV+ G
Sbjct: 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-----VDLAKKYADRIVGLKAGEIVFDG 228
Query: 229 P 229
Sbjct: 229 A 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 44/208 (21%), Positives = 78/208 (37%), Gaps = 53/208 (25%)
Query: 2 TLLLGPPSSGKTTLLLALAG-------KLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQ 54
LLG +GK+TLLL L G + D + + Y+ L E ++ + Q
Sbjct: 21 LALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGE---PLDYSRKGLLER--RQRVGLVFQ 75
Query: 55 N-DVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEG 113
+ D + V + + F LG+ +E+ RR ++A + A G
Sbjct: 76 DPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA-----------LTAVGASG 119
Query: 114 VESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 173
+ +SGG+KKRV + L +DE +
Sbjct: 120 LRERPT-----------------------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTA 156
Query: 174 GLDSSTTYQIVKCLQQIVHVTDATILMS 201
GLD + Q++ L+++ T+++S
Sbjct: 157 GLDPAGREQMLAILRRLRA-EGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-05
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 41/193 (21%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP---QKTSAYISQNDV 57
L+GP +GK+TLL L G ++ G I NG L + + A++ Q+
Sbjct: 350 RVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHP- 405
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
+ T+ E + LAR + +AEI ++ ++ ++
Sbjct: 406 FLFAGTIAENI-----------------RLARPDAS-----DAEIREALERAGLDEFVAA 443
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
L GLD T +G+ G+SGGQ +R+ + L +DE + LD+
Sbjct: 444 LP-------QGLD----TPIGEG-GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
Query: 178 STTYQIVKCLQQI 190
T ++++ L+ +
Sbjct: 492 ETEAEVLEALRAL 504
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 48/173 (27%)
Query: 6 GPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE--FVPQKTSAYISQNDVHVGEMT 63
GP GKTTLL LAG L R GE+ +NG L E P + Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAG-LLRPDS--GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
E L F A G G + + LA
Sbjct: 90 ALENLHFWAAIHG-GAQRTIEDALAA---------------------------------- 114
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
+GL +D +S GQ++R+ + + +DE +T LD
Sbjct: 115 ---VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 65/251 (25%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG--------YRLNE----FVPQKTSAY 51
++G SGK+TLL LAG+L D G TY Y+L+E + + +
Sbjct: 34 IVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLSEAERRRLMRTEWGF 90
Query: 52 ISQNDVHVGEMTVKETLDFSARCLGVGTR-YELLSELARREKDAGIFPEAEIDLFMKATA 110
+ QN M V + R + +G R Y + R E EID
Sbjct: 91 VHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RATAQDWLEEVEIDP------ 139
Query: 111 MEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDE 170
I D++ R SGG ++R+ +V + +FMDE
Sbjct: 140 -----------------------TRI--DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 171 ISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFD------LFDDIILLSEGQI 224
+ GLD S +++ L+ + V D + + ++ T D L ++++ +G++
Sbjct: 175 PTGGLDVSVQARLLDLLRGL--VRDLGLAVIIV-----THDLGVARLLAQRLLVMQQGRV 227
Query: 225 VYQGPRERVLE 235
V G ++VL+
Sbjct: 228 VESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 52/211 (24%)
Query: 1 MTLLLGPPSSGKTTLLLAL--AGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVH 58
+T L+GP SGK+TLL ++ LN ++ + G I YNG+ N + P+ + + +
Sbjct: 33 ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH--NIYSPRTDTVDLRKEIGM 90
Query: 59 VGE------MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAME 112
V + M++ E + + R G+ KD + EA
Sbjct: 91 VFQQPNPFPMSIYENVVYGLRLKGI--------------KDKQVLDEA------------ 124
Query: 113 GVESSLITDYTLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGEMIVGPTKTLFMD 169
VE SL G I + V D ++ G+SGGQ++RV ++ K + +D
Sbjct: 125 -VEKSLK--------GASIWDE--VKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLD 173
Query: 170 EISTGLDSSTTYQIVKCLQQIVHVTDATILM 200
E ++ LD + +I + L + D T+L+
Sbjct: 174 EPTSALDPISAGKIEETLLGLKD--DYTMLL 202
|
Length = 252 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGY 761
E++ + + + VT + A++G SG GKTTL+ D + G +
Sbjct: 5 EIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR---- 60
Query: 762 IEGDIRISGF----PKKQETFARIS-GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKE 816
+EG I G P+ T R G Q P +++ +++ + + K K
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKL 119
Query: 817 DKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
D+I VEE + L + + PG T LS Q++RL IA L P +I +DEPTS
Sbjct: 120 DRI--VEESLKKAALWDEVKSELNKPG-TRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 877 LDARA 881
LD A
Sbjct: 177 LDPIA 181
|
Length = 250 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 33/154 (21%)
Query: 737 ALMGVSGAGKTTLMDVLAG--RKTGGYI----------EGDIRISGFPKKQETFARISGY 784
A+ G SGAGKT+L++ ++G R G I E I + P+K+ RI GY
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLP--PEKR----RI-GY 80
Query: 785 CEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGV 844
Q+ P V+ +L Y ++K + +V L ++ + PG
Sbjct: 81 VFQDARLFPHYKVRGNLRYG--------MAKSMV----AQFDKIVALLGIEPLLDRYPG- 127
Query: 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 -SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 30/183 (16%)
Query: 738 LMGVSGAGKTTLMDVLAGRKTGGYIE----GDIRISG--F-------PKKQETFARISGY 784
L+G SGAGK++L+ VL +E G + I+G F K R G
Sbjct: 33 LLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGM 86
Query: 785 CEQNDIHSPQVTVKESLIYSA--FLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842
Q P +TV+++LI + L L+K+ + E++++ + L+ D P
Sbjct: 87 VFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALAR----AEKLLERLRLKPYADR---FP 139
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 902
LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V
Sbjct: 140 --LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIV 197
Query: 903 IHQ 905
H+
Sbjct: 198 THE 200
|
Length = 242 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVL--------AGRKTGG---YIEGDI-RIS 769
+L ++T + +MG SG+GK+TL+ VL + K G Y DI +I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 770 GFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
++E G Q P +++ +++ Y KE + KI VEE + V
Sbjct: 85 AIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI--VEECLRKV 137
Query: 830 ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 889
L + P + LS Q++RLTIA L P ++ MDEPTS +D + + + +
Sbjct: 138 GLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 890 RNTVDTGRTVVCTIHQP 906
+ +V H P
Sbjct: 197 -TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 30/222 (13%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGD------IRISGFPKKQE 776
LN+++ + G AL+G +G+GK+T+ + G + D I + G +
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 777 TFARIS---GYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
T I G QN D TV + + AF + V + + I V +V+ V +
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDV---AFGLENRAVPRPEMIKIVRDVLADVGML 134
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 891
D+ LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 135 DYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL 189
Query: 892 TVDTGRTVVCTIHQPSIDIFEA--FDELLLLKRGGQVIYSGP 931
TV+ H DI EA D++L+L G + P
Sbjct: 190 KKKNNLTVISITH----DIDEANMADQVLVLDDGKLLAQGSP 227
|
Length = 282 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 66/191 (34%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISGFPKKQ 775
L ++ + AL+G SG GK+T + D++ K IEG++ + G
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----- 69
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEV------------SKEDKIIF-- 821
DI+ + V + L K V S D + +
Sbjct: 70 ------------QDIYKSDIDVNQ---------LRKRVGMVFQQPNPFPMSIYDNVAYGP 108
Query: 822 -------VEEVMDLVELESLKDAIVG-------LPGVTGLSIEQRKRLTIAVELVANPSI 867
+++ ++VE +SLK A + GLS Q++RL IA L P +
Sbjct: 109 RTHGIKDKKKLDEIVE-KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEV 167
Query: 868 IFMDEPTSGLD 878
+ MDEPTS LD
Sbjct: 168 LLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 17/181 (9%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFPKKQET 777
K + L ++ + AL+G SG GK+T + I+G + I G K +
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73
Query: 778 FARIS---GYCEQNDIHSPQVTVK---ESLIYSAFLR-LAKEVSKEDKIIFVEEVMDLVE 830
+ G Q P V VK E++ Y+ L + K +K+++ V + + V
Sbjct: 74 VVALRKNVGMVFQQ----PNVFVKSIYENISYAPKLHGMIK--NKDEEEALVVDCLQKVG 127
Query: 831 L-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 889
L E +KD + LS Q++RL IA L P ++ +DEPTS LD ++ ++ +
Sbjct: 128 LFEEVKDKLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 890 R 890
+
Sbjct: 186 K 186
|
Length = 246 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-05
Identities = 45/238 (18%), Positives = 84/238 (35%), Gaps = 49/238 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHVGEM 62
L+G GKTTLL A+AG + + G I L P K A + QN +
Sbjct: 36 LIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
V++ + F G+ + +++A R DA
Sbjct: 95 KVEDNVAF-----GLRAQKMPKADIAERVADA---------------------------- 121
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
LK++GL + +SGG ++R+ I L +DE + LD++
Sbjct: 122 -LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRAN 175
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV--------YQGPRER 232
+ + + + ++ + + L D ++ +G++ Y P +
Sbjct: 176 MREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADG 233
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 47/224 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
+LGP GKTTLL +AG + RG I NG R+ P + QN+ + +
Sbjct: 36 VLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEG--PGAERGVVFQNEALLPWLN 90
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
V + + F + G+ RRE I
Sbjct: 91 VIDNVAFGLQLRGIEKA-------QRRE---------------------------IAHQM 116
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI 183
L ++GL + + +SGG ++RV + + L +DE LD+ T Q+
Sbjct: 117 LALVGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171
Query: 184 VKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLS--EGQIV 225
+ L + T +L+ + E L +++LS G++V
Sbjct: 172 QELLLDLWQETGKQVLL-ITHDIEEALFLATRLVVLSPGPGRVV 214
|
Length = 259 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 47/228 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNR---DLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
LLGP +GKTTLL A+ G + +KV G G+R +VPQ+ H
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR----------H-- 58
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
+ DF + + ++S I + V
Sbjct: 59 ----EFAWDFP-----ISVAHTVMSGRTGH-----------IGWLRRP----CVADFAAV 94
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
L+ +GL D VG+ +SGGQ++RV + L +DE TGLD T
Sbjct: 95 RDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+ + ++ T ++ + D ++LL+ G+++ G
Sbjct: 150 ELLTELFIEL--AGAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTL---MDVLAGRKTGGYIEGDIRISG--FPKKQET 777
L + + + A++G SG GK+T ++++ + G++ +G K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 778 FARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ES 833
+ G Q PQ ++ +++ Y R+ +K+ VE+ + V L +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWDE 144
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
+KD + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 145 VKDRLHT--QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 64/266 (24%)
Query: 693 LAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDV 752
+++ F++V Y M+++G L+ ++ G AL+G +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 753 LAG--RKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLA 810
+ + G I I+GY +T + +L
Sbjct: 53 FNALLKPSSGTIT-----------------IAGY---------HITPETG--NKNLKKLR 84
Query: 811 KEVSK----EDKIIFVEEVMDLVEL----------ESLKDAI-----VGLP------GVT 845
K+VS + +F V+ VE E+ + A+ VGL
Sbjct: 85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPF 144
Query: 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 905
LS Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H
Sbjct: 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204
Query: 906 PSIDIFEAFDELLLLKRGGQVIYSGP 931
D+ E D++L+L+ G + ++ P
Sbjct: 205 MD-DVAEYADDVLVLEHGKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-05
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 39/188 (20%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYIS--QNDVHV 59
+LGP SGK+TLL LAG L+ +GE+T +G ++ + +S D H+
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHL 420
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
+ TV+E L + T EL + L R G+ A + + L
Sbjct: 421 FDTTVRENLRLAR---PDATDEELWAALER----VGL-----------ADWLRALPDGL- 461
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
DT++G E +SGG+++R+ ++ L +DE + LD+ T
Sbjct: 462 --------------DTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAET 506
Query: 180 TYQIVKCL 187
++++ L
Sbjct: 507 ADELLEDL 514
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-05
Identities = 50/239 (20%), Positives = 87/239 (36%), Gaps = 60/239 (25%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
L+GP GK+TLL +AG GE+ +G + P Y+ Q D + +T
Sbjct: 35 LVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLT 89
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
V + + GV + E + ++ + G E++
Sbjct: 90 VLDNVALGLELQGV----------PKAEA------RERAEELLELVGLSGFENAYPHQ-- 131
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRV----TTGEMIVGPTKTLFMDEISTGLDSST 179
+SGG ++RV + V P L +DE + LD+ T
Sbjct: 132 ---------------------LSGGMRQRVALARA---LAVDP-DVLLLDEPFSALDALT 166
Query: 180 TYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
Q+ + L I T T+L+ T D+ D+ + L++ +V R++ E
Sbjct: 167 REQLQEELLDIWRETGKTVLLV-------THDI-DEAVFLADRVVVLSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 58/236 (24%), Positives = 100/236 (42%), Gaps = 43/236 (18%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYI---SQNDVH 58
T ++GP GK+TLL L+ + G + +G + + ++ + I +QN
Sbjct: 36 TAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATT 92
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
G++TV+E + AR RY R K+ E + M+AT
Sbjct: 93 PGDITVQELV---AR-----GRYPHQPLFTRWRKE----DEEAVTKAMQATG-------- 132
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
IT + + DT +SGGQ++R ++ T + +DE +T LD S
Sbjct: 133 ITHLADQSV------DT---------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177
Query: 179 TTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG-PRERV 233
+++ L ++ + L ++L + +I L EG+IV QG P+E V
Sbjct: 178 HQIDLLELLSEL-NREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 62/245 (25%)
Query: 699 SVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT 758
SV Y D+PP +L V+ + G ++G +GAGK+TL +LA +
Sbjct: 13 SVRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRF 57
Query: 759 GGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESL--------IYSAFLRLA 810
EG I I G + P ++ SL ++S +R
Sbjct: 58 LEAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSN 101
Query: 811 KEVSKE--DKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868
+ E D+ I+ +L+ + GL LS QR+ L +A L+ P ++
Sbjct: 102 LDPFDEYSDEEIY----------GALRVSEGGL----NLSQGQRQLLCLARALLKRPRVL 147
Query: 869 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELLLLKRGGQV 926
+DE T+ +D A++ +T+R T T++ H + ID +D++L++ G
Sbjct: 148 VLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAGEVK 202
Query: 927 IYSGP 931
Y P
Sbjct: 203 EYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 26/198 (13%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA 779
+ LN + + AL+G SG GK+T + L + +EG I+I G +
Sbjct: 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTL--NRMNDLVEG-IKIEG----NVIYE 72
Query: 780 RISGYCEQNDI-----------HSPQ---VTVKESLIYSAFLRLAKEVSKEDKIIFVEEV 825
+ Y DI +P +++ +++ Y + K+ K D+I VE+
Sbjct: 73 GKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEI--VEQS 130
Query: 826 MDLVEL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+ L +KD + LS Q++RL IA L P++I MDEPTS LD +
Sbjct: 131 LKKSALWNEVKDKLN--TNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 885 VMRTVRNTVDTGRTVVCT 902
+ + N ++ ++ T
Sbjct: 189 IEELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 38/184 (20%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISG---FP 772
L ++ + A +G SG GK+T + D++ + +EG+IRI G +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 773 KKQET--FARISGYCEQNDIHSPQVTVKESLIY---------SAFLRLAKEVSKEDKIIF 821
K + + G Q P+ ++ E++ Y +AF+R E + + ++
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALW 133
Query: 822 VEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881
+EV D LK++ L G Q++RL IA + +PS++ MDEP S LD +
Sbjct: 134 -DEVKD-----KLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPIS 181
Query: 882 AAIV 885
A V
Sbjct: 182 TAKV 185
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Query: 145 ISGGQKKRVT-TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLL 203
+SGGQK+RV G + V P K + +DE ++ LD + QI+K ++++ + T++ S+
Sbjct: 144 LSGGQKQRVAIAGILAVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVI-SIT 201
Query: 204 QPAPETFDLFDDIILLSEGQIVYQG-PRE 231
E ++ D +++L +G+++ QG P E
Sbjct: 202 HDIDEA-NMADQVLVLDDGKLLAQGSPVE 229
|
Length = 282 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 4e-05
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 47/189 (24%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS-GFPKKQETFARI 781
L +++ +F PG ++G++GAGK+TL+ ++AG EG+ R + G ++
Sbjct: 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG--------IKV 72
Query: 782 SGYCEQNDIHSPQVTVKESL----------------IYSAFL-------RLAKEVSK-ED 817
GY Q P+ TV+E++ IY+A+ LA E + ++
Sbjct: 73 -GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQE 131
Query: 818 KIIFVEEVMDLVELES-LKDAIVGL---PG---VTGLSIEQRKRLTIAVELVANPSIIFM 870
I + D +L+S L+ A+ L P VT LS +R+R+ + L+ P ++ +
Sbjct: 132 II----DAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLL 187
Query: 871 DEPTSGLDA 879
DEPT+ LDA
Sbjct: 188 DEPTNHLDA 196
|
Length = 556 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 9/185 (4%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG------FPKKQETFARISGY 784
RPG + A+MG +G+GK+TL LAGR+ G + G P+ + +
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84
Query: 785 CEQNDIHSPQVTVKESLIYSA-FLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG 843
Q + P V+ + L + +R + D+ F + + + + L + + ++
Sbjct: 85 --QYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142
Query: 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 903
G S ++KR I V P + +DE SGLD A IV V + D R+ +
Sbjct: 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVT 202
Query: 904 HQPSI 908
H I
Sbjct: 203 HYQRI 207
|
Length = 248 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 4e-05
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 812 EVSKEDKIIFVEEVMDLVELESLKDAIVGLP---------GVTGLSIEQRKRLTIAVELV 862
E+ K + I EV+D+ + + D + LP + LS Q++R++IA ++
Sbjct: 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII 595
Query: 863 ANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
NP I+ +DE TS LD ++ +V +T+ N
Sbjct: 596 RNPKILILDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 49/198 (24%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-------AYIS 53
M ++G SGK+TLL + G L + G++ NG +K S Y+
Sbjct: 26 MYAIIGESGSGKSTLLNII-GLL--EKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLF 82
Query: 54 QNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEG 113
QN + TV+E LD +G +Y+ LS+ +REK K
Sbjct: 83 QNFALIENETVEENLD-------LGLKYKKLSKKEKREK-------------KK------ 116
Query: 114 VESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 173
L+ +GL++ + + +SGG+++RV I+ P + DE +
Sbjct: 117 --------EALEKVGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPLILADEPTG 163
Query: 174 GLDSSTTYQIVKCLQQIV 191
LD +++ L ++
Sbjct: 164 SLDPKNRDEVLDLLLELN 181
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 54/192 (28%), Positives = 79/192 (41%), Gaps = 40/192 (20%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 768
E++ D +L V + AL+G SG GK+T + L D+ I
Sbjct: 5 EVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMN-------DL-I 56
Query: 769 SGFPKKQETFARISGYCEQNDIHSPQVTV-----KESLIY--------SAFLRLAK--EV 813
GF + Y + DI+ P V V K +++ S F +A +
Sbjct: 57 PGFRHEGHI------YLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRI 110
Query: 814 SKEDKIIFVEEVMDLVELESLKDAIVG-------LPGVTGLSIEQRKRLTIAVELVANPS 866
ED F+EE ++ ESLK A + GLS Q++RL IA + +P
Sbjct: 111 HGEDDEDFIEERVE----ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPE 166
Query: 867 IIFMDEPTSGLD 878
+I MDEP S LD
Sbjct: 167 VILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 24/216 (11%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGY----CE 786
G + AL+G +GAGK+TLM ++AG G + I G P + T A+
Sbjct: 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAKAHQLGIYLVP 92
Query: 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLK-DAIVGLPGV 844
Q + P ++VKE++++ L K + K ++++ L L L D+ G
Sbjct: 93 QEPLLFPNLSVKENILF----GLPKRQASMQK---MKQL--LAALGCQLDLDSSAGS--- 140
Query: 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 904
L + R+ + I L+ + I+ +DEPT+ L + +R + G +V H
Sbjct: 141 --LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISH 198
Query: 905 QPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVI 940
+ +I + D + ++ R G + SG S I
Sbjct: 199 KLP-EIRQLADRISVM-RDGTIALSGKTADLSTDDI 232
|
Length = 510 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 9/157 (5%)
Query: 726 VTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARISG 783
V+ R G A++G +G+GK+TL +LAG T G I + F RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 784 -YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842
+ + N +P++ + + I LRL ++ E + + E + +V L L D P
Sbjct: 92 IFQDPNTSLNPRLRIGQ--ILDFPLRLNTDLEPEQRRKQIFETLRMVGL--LPDHANYYP 147
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879
+ L+ Q++R+ +A L+ P II DE + LD
Sbjct: 148 HM--LAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVL-------AGRKTGGYIEGDIRISGF 771
+L +L V+ G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 772 PKKQETFARIS--GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV 829
++ R GY Q P+V+ E + L + V +E E++ +
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL---LERGVPREAARARARELLARL 136
Query: 830 EL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
+ E L LP T S +++R+ IA +A+ I+ +DEPT+ LDA +V+
Sbjct: 137 NIPERLWH----LPPAT-FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 889 VRNTVDTGRTVVCTIHQPSI 908
+ G ++ H +
Sbjct: 192 IAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 51/203 (25%), Positives = 89/203 (43%), Gaps = 39/203 (19%)
Query: 737 ALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRIS-------GFPKKQETFARISGYCEQ 787
L+G +GAGK+TL+ +LAG G + R+S GF
Sbjct: 52 GLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGF---------------- 95
Query: 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGL 847
+P++T +E++ + +S+++ ++E+++ EL D LP V
Sbjct: 96 ----NPELTGRENIYLNG---RLLGLSRKEIDEKIDEIIEFSELGDFID----LP-VKTY 143
Query: 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 907
S + RL A+ P I+ +DE + DA R +R + G+TV+ H PS
Sbjct: 144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS 203
Query: 908 IDIFEAFDELLLLKRGGQVIYSG 930
I D L+L++ G++ + G
Sbjct: 204 S-IKRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQ 54
+ L+GP SGK+TLL A+AG L GEI +G + + + + Y+ Q
Sbjct: 27 IVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 6e-05
Identities = 56/254 (22%), Positives = 98/254 (38%), Gaps = 53/254 (20%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE------FVPQKTSAYISQ 54
+T L+G GK+TL + L+G L +G + + G L+ + Q+ +
Sbjct: 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85
Query: 55 NDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGV 114
+ + + + FS R LGV +E+ RR +A +A+
Sbjct: 86 PEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEALTLVDAQ-----------HF 129
Query: 115 ESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 174
I + +S GQKKRV +V + L +DE + G
Sbjct: 130 RHQPI-----------------------QCLSHGQKKRVAIAGALVLQARYLLLDEPTAG 166
Query: 175 LDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
LD + Q++ +++IV + I+ S +++ D + +L +GQI+ G V
Sbjct: 167 LDPAGRTQMIAIIRRIVAQGNHVIISS--HDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
Query: 235 ---EFFESCGFCCP 245
E E G P
Sbjct: 225 ACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 49/229 (21%), Positives = 87/229 (37%), Gaps = 46/229 (20%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP--QKTSAYISQNDVHV 59
T ++GP SGK+TLL +AG + G + NG + P + S +N++
Sbjct: 27 TAIVGPSGSGKSTLLNLIAG---FETPQSGRVLINGVDVTAAPPADRPVSMLFQENNL-F 82
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
+TV++ + LG+ +L +E R+ + K E
Sbjct: 83 AHLTVEQNVG-----LGLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLPGE------- 128
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
+SGG+++RV ++V L +DE LD +
Sbjct: 129 -------------------------LSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 180 TYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+++ + + T T+LM QP + L ++ L G+I QG
Sbjct: 164 RAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFP-KKQ-E 776
L + ++ G L + G +GAGKT+L+ +LAG R G++ G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRD 70
Query: 777 TFARISGYC-EQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
+ + Y Q I ++T E+L + + RL E + E + V L +
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRF--YQRLHGPGDDEA----LWEALAQVGLAGFE 123
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
D V LS Q++R+ +A + + +DEP + +D + A + + +
Sbjct: 124 DVPVRQ-----LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQ 178
Query: 896 GRTVVCTIHQP 906
G V+ T HQ
Sbjct: 179 GGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 51/222 (22%), Positives = 103/222 (46%), Gaps = 21/222 (9%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPKKQ 775
+ + LN + F+ + ++G +G+GK+T++ + G +TG I GD I KK
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 776 ETFARIS---GYCEQ-NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL 831
+ R+ G Q + Q T+++ + AF + +K++ V E++ LV+L
Sbjct: 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDI---AFGPVNLGENKQEAYKKVPELLKLVQL 139
Query: 832 --ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT- 888
+ +K + L G Q++R+ +A + + + + +DEPT GLD + +
Sbjct: 140 PEDYVKRSPFELSG------GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLF 193
Query: 889 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
R + + ++ H + DE++++ G+VI G
Sbjct: 194 ERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIG 233
|
Length = 289 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 7e-05
Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 46/251 (18%)
Query: 4 LLGPPSSGKTTLLLAL--AGKLNRDLKVRGEITYNGY-----RLNEFVPQKTSAYISQND 56
L+GP GKTT L A+ L +V G I +G R++ ++ + Q
Sbjct: 35 LIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94
Query: 57 VHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116
M+V + + + G+ R L+ R + A ++ E + L AT
Sbjct: 95 NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPAT------- 147
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
G+SGGQ++R+ + + L MDE ++ LD
Sbjct: 148 ---------------------------GLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180
Query: 177 SSTTYQIVKCLQQIVHVTDATILMSLLQPAPE-----TFDLFDDIILLSEGQIVYQGPRE 231
++T +I + + VT I+ + A +F L D++ ++ PR+
Sbjct: 181 PASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRD 240
Query: 232 RVLEFFESCGF 242
E + S F
Sbjct: 241 ERTEAYVSGRF 251
|
Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 737 ALMGVSGAGKTTLMDVLA---GRKTGGYIEGDIRISGFPKKQE-----TFARISGYCEQN 788
AL+G SG GK+T + L R I+G + + G Q+ + G Q+
Sbjct: 75 ALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQS 134
Query: 789 DIHSPQVTVKESLIYSAFLR-------LAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
P+ +++E++ Y LA+ + ++DK + +LVE SL+ A +
Sbjct: 135 PNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDK----DAEDELVE-RSLRQAALWD 188
Query: 842 P-------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
GLS Q++RL IA L +P +I MDEP S LD A +
Sbjct: 189 EVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 46/239 (19%), Positives = 98/239 (41%), Gaps = 53/239 (22%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS----AYISQNDVHV 59
++GP +GKTTL+ L + +G+I +G + + + +K+ + Q D +
Sbjct: 34 IVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRD-ISRKSLRSMIGVVLQ-DTFL 88
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
T+ E + A E+ EA F+ L
Sbjct: 89 FSGTIMENIRLG-------------RPNATDEEVIEAAKEAGAHDFIM---------KLP 126
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
Y DT++G+ +S G+++ + ++ K L +DE ++ +D+ T
Sbjct: 127 NGY-----------DTVLGENGG-NLSQGERQLLAIARAMLRDPKILILDEATSNIDTET 174
Query: 180 TYQIVKCLQQIVHVTDATIL---MSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
I + L++++ + I+ +S ++ A D I++L +G+I+ +G + +L
Sbjct: 175 EKLIQEALEKLMKGRTSIIIAHRLSTIKNA-------DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 27/194 (13%)
Query: 724 NEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIRISGFPKKQ-ETFA 779
+++ + G + G+ G+G+T LM+ L G R G IS P+ +
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS--PRSPLDAVK 337
Query: 780 RISGYCEQNDIHS---PQVTVKESLIYSAFLRLAK--------EVSKEDKIIFVEEVMDL 828
+ Y ++ + P ++ +++ S L+ E + E +L
Sbjct: 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRT--AENQREL 395
Query: 829 VELE--SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
+ L+ S+ I T LS ++++ I+ L P +I DEPT G+D A A +
Sbjct: 396 LALKCHSVNQNI------TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY 449
Query: 887 RTVRNTVDTGRTVV 900
+ +R D G+ ++
Sbjct: 450 KVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 735 LAALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIRISG---FPKKQETFA--RISGYCE 786
+ AL+G SG GK+T + L + IEG++ + G + K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ESLKDAIVGLPGVT 845
Q P +++ +++ Y + K+ + DKI VE + L + +KD +
Sbjct: 92 QKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKI--VEWALKKAALWDEVKDDLK--KSAL 146
Query: 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
LS Q++RL IA + P +I MDEPTS LD
Sbjct: 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 60/242 (24%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYIS---QNDVH 58
LLGP +GK+TL L G+I+ G+ L P+ A + Q
Sbjct: 30 VALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAALARLGVVFQQPTL 85
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPE-AEIDLFMKATAMEGVESS 117
+++V++ L + A L L+R E A I A + L +A
Sbjct: 86 DLDLSVRQNLRYHAA----------LHGLSRAEARARIAELLARLGLAERA--------- 126
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
D+ R ++GG ++RV ++ L +DE + GLD
Sbjct: 127 ---------------------DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDP 165
Query: 178 STTYQIVK-----CLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRER 232
++ I Q + V AT L+ ++ D +++L G+++ G
Sbjct: 166 ASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAE 218
Query: 233 VL 234
+
Sbjct: 219 LR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 144 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLL 203
G+SGGQ++RV + L +DE ++ LD T ++ L+ + T+++
Sbjct: 100 GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159
Query: 204 QPAPETFDLFDDIILLSEGQ 223
E L D +++L +G+
Sbjct: 160 DLD-EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 1e-04
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQNDV 57
++GP SGK+TLL L + GEI +G L + + K AY+ Q D
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLESLRKNIAYVPQ-DP 85
Query: 58 HVGEMTVKE 66
+ T++E
Sbjct: 86 FLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 53/255 (20%), Positives = 96/255 (37%), Gaps = 79/255 (30%)
Query: 2 TLLLGPPSSGKTTLLLALAG--KLNRDLKVRGEITYNG---YRLNE----------FVPQ 46
T L+GP GK+TLL L L GE+ +G Y L+ V Q
Sbjct: 29 TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88
Query: 47 KTSAYISQNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFM 106
K + + ++ + + + R G+ + EL R ++A
Sbjct: 89 KPNPF---------PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------------ 123
Query: 107 KATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNR-----GISGGQKKRVTTGEMIVG 161
L+ L DE+ G+SGGQ++R+ +
Sbjct: 124 -----------------LRKAALW--------DEVKDRLHALGLSGGQQQRLCLARALAN 158
Query: 162 PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILM---SLLQPAPETFDLFDDIIL 218
+ L +DE ++ LD +T +I + + ++ + TI++ ++ Q A + D
Sbjct: 159 EPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQQAA----RVADRTAF 212
Query: 219 LSEGQIVYQGPRERV 233
L G++V GP E++
Sbjct: 213 LLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 50/234 (21%), Positives = 93/234 (39%), Gaps = 44/234 (18%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQNDVHVG 60
++GP SGK+TL + G G + +G L ++ + K Y+ Q DV +
Sbjct: 349 IIGPSGSGKSTLARLIVGIW---PPTSGSVRLDGADLKQWDRETFGKHIGYLPQ-DVELF 404
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
TV E + AR ++A + +E++ +
Sbjct: 405 PGTVAENI-------------------ARFGENA--------------DPEKIIEAAKLA 431
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
IL L DT++G +SGGQ++R+ + G K + +DE ++ LD
Sbjct: 432 GVHELILRLPDGYDTVIGPG-GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
+ ++ + ++++ P D I++L +G+I G R+ VL
Sbjct: 491 QALANAIKALKARGITVVVIT---HRPSLLGCVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 33/162 (20%), Positives = 50/162 (30%), Gaps = 50/162 (30%)
Query: 13 TTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS----AYISQNDVHVGEMTVKETL 68
+TLL + G L G I +G +K + Q+ E+TV+E L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 69 DFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILG 128
F R + A + L+ +G
Sbjct: 58 FFGLR-----------DKEADARAEE----------------------------ALERVG 78
Query: 129 LDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDE 170
L D + SGGQK+RV ++ K L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 59/241 (24%), Positives = 88/241 (36%), Gaps = 67/241 (27%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQK-TSAYISQNDVHVGEM 62
LLGP GKTTLL +AG GEI +G + P K + QN +
Sbjct: 31 LLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHL 87
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV E + F R + +E+ R +A + +EG +
Sbjct: 88 TVFENIAFGLRLKKLPK-----AEIKERVAEA-----------LDLVQLEGYANRKP--- 128
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS--TT 180
++ SGGQ++RV +V K L +DE LD
Sbjct: 129 ----------------SQL----SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKD 168
Query: 181 YQI-VKCLQQ-----IVHVT---DATILMSLLQPAPETFDLFDDIILLSEGQIVYQG-PR 230
Q+ +K LQ+ V VT + + MS D I ++++G+I G P
Sbjct: 169 MQLELKRLQKELGITFVFVTHDQEEALTMS------------DRIAVMNKGKIQQIGTPE 216
Query: 231 E 231
E
Sbjct: 217 E 217
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISG 770
L+ V+ + R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDG 61
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 145 ISGGQKKRV-TTGEMIVGPTKTLF-MDEISTGLDSSTTYQIVKCLQQIV 191
+SGG+ +RV E+ P TLF +DE STGL Q+++ ++ ++
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI 136
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 46/257 (17%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+T L+GP SGKTT L L R+N+ K S Y DV +G
Sbjct: 49 VTSLMGPTGSGKTTFLRTLN------------------RMND----KVSGYRYSGDVLLG 86
Query: 61 EMTV---KETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
++ ++ L+F R VG ++ + D + + GV +
Sbjct: 87 GRSIFNYRDVLEFRRR---VGMLFQRPNPFPMSIMD-NVLAGVRAHKLVPRKEFRGVAQA 142
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
+T+ L D KD + +SGGQ++ + + + L +DE ++ LD
Sbjct: 143 RLTEVGL----WDAVKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFF 237
+TT +I + ++ + I+ L A + D L +G++V +GP E++
Sbjct: 197 TTTEKIEEFIRSLADRLTVIIVTHNLAQAAR---ISDRAALFFDGRLVEEGPTEQL---- 249
Query: 238 ESCGFCCPERKGTADFL 254
F P+ TA ++
Sbjct: 250 ----FSSPKHAETARYV 262
|
Length = 276 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 35/223 (15%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781
+L++++ + ++G+SG+GK+TL +L G G+I ++GF K +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFSLKDIDRHTL 546
Query: 782 SGYCEQNDIHSPQVTVKESLIYSA-----FLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
+ + PQ E I+S L AKE +D+I ++ E+ KD
Sbjct: 547 RQFIN----YLPQ----EPYIFSGSILENLLLGAKENVSQDEIW---AACEIAEI---KD 592
Query: 837 AIVGLP-GV-TGLSIE-------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 887
I +P G T LS E Q++R+ +A L+ + ++ +DE TS LD ++
Sbjct: 593 DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN 652
Query: 888 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ N D +T++ H+ + + + D++++L G +I G
Sbjct: 653 NLLNLQD--KTIIFVAHR--LSVAKQSDKIIVLDHGK-IIEQG 690
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 906
LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H P
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204
Query: 907 SIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEA----IPGVPKIKEKYNPATWM 962
+ A E ++ R G+++ P + V E G + + A M
Sbjct: 205 QV---AAQAERVIEIRDGEIV-RNPPAQEKVNVAGGTEPVVNTASGWRQFVSGFREALTM 260
Query: 963 LEVSSAAAEVR 973
+ AA ++R
Sbjct: 261 AWRAMAANKMR 271
|
Length = 648 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGD-IRISGFPKKQETFARISGYCEQND 789
G + AL+G SG GK+TL+ +LAG + T G I D + +S P Q R Q+
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPINMMFQSY 100
Query: 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849
P +TV++++ AF ++ K + V E++ LV ++ LS
Sbjct: 101 ALFPHMTVEQNI---AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSG 152
Query: 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
QR+R+ +A L P ++ +DEP LD +
Sbjct: 153 GQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 21/208 (10%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
L +V+ G +++G +G+GK+T+ ++ G + G+I + + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 783 ---GYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
G QN D VK + AF V ++ V E + V++ D
Sbjct: 83 KHIGIVFQNPDNQFVGSIVKYDV---AFGLENHAVPYDEMHRRVSEALKQVDMLERADY- 138
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGR 897
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR +
Sbjct: 139 ----EPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194
Query: 898 TVVCTIHQPSIDIFEAF--DELLLLKRG 923
T++ H D+ EA D ++++ +G
Sbjct: 195 TIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 45/182 (24%)
Query: 724 NEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQ----- 775
N V R + +L+G +GAGKTT+ + L G + TGG I I G P Q
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81
Query: 776 --ETFARISGYCEQNDIHSPQVTVKESLIYS-----------------AFLRLAKEVSKE 816
TF Q+ ++TV E+L+ + AF R E
Sbjct: 82 VVRTF--------QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRR--AESEAL 131
Query: 817 DKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
D+ E + L+E + + A L+ Q++RL IA +V P I+ +DEP +G
Sbjct: 132 DRAATWLERVGLLEHAN-RQA-------GNLAYGQQRRLEIARCMVTQPEILMLDEPAAG 183
Query: 877 LD 878
L+
Sbjct: 184 LN 185
|
Length = 255 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR--ISGYCEQN 788
G A++G SGAGK+TL++++AG T G + ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 789 DIHSPQVTVKE--SLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTG 846
++ +TV + L + L+L ++ + + + +E L LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREK-----LHAIARQMGIEDLLAR---LPG--Q 129
Query: 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 804 SAFLR-LAKEVSKEDK-IIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVEL 861
+ R LA+E+ +I+++ + + E L ++ + G S RL +A+ L
Sbjct: 16 TTLARALARELGPPGGGVIYID--GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALAL 73
Query: 862 V--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTIHQPSI----D 909
P ++ +DE TS LDA A+++ + TV+ T +
Sbjct: 74 ARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPAL 133
Query: 910 IFEAFDELLLLKRG 923
+ FD ++L
Sbjct: 134 LRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 61/232 (26%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG--YRLNEFVPQKTSAYISQNDVHVGE 61
LGP +GKTT + + G + D GEIT++G Y+ N ++ A I
Sbjct: 31 FLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGF-YPN 86
Query: 62 MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITD 121
+T +E L AR LG+ + I D
Sbjct: 87 LTARENLRLLARLLGI--------------------RKKRI------------------D 108
Query: 122 YTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTY 181
L ++GL + +G S G K+R+ ++G L +DE + GLD
Sbjct: 109 EVLDVVGLK-----DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP---- 159
Query: 182 QIVKCLQQIVHV---TDATILMS--LLQPAPETFDLFDDIILLSEGQIVYQG 228
+K L++++ T+L+S LL E + D I ++++G+++ +G
Sbjct: 160 DGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 71/251 (28%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVR------GEITYNGYRLNEFVPQ---KTSAY 51
L+GP SGK+TL+ +L R G I +G+ + ++ +
Sbjct: 30 TVALVGPSGSGKSTLV---------NLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80
Query: 52 ISQNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAM 111
+SQ DV + TV E + + + A A A
Sbjct: 81 VSQ-DVFLFNDTVAENIAYGRP----------------GATREEVEEAARA-----ANAH 118
Query: 112 EGVESSLITDYTLKILGLDICKDTIVGDEMNRGI--SGGQKKRVTTGEMIVGPTKTLFMD 169
E + L DT++G+ RG+ SGGQ++R+ ++ L +D
Sbjct: 119 EFIME------------LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILD 163
Query: 170 EISTGLDSSTTYQIVKCLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQI 224
E ++ LD+ + + L++++ + T +S ++ A D I++L +G+I
Sbjct: 164 EATSALDTESERLVQAALERLM--KNRTTFVIAHRLSTIENA-------DRIVVLEDGKI 214
Query: 225 VYQGPRERVLE 235
V +G E +L
Sbjct: 215 VERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 44/232 (18%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-QKTSAYISQNDVHVGEM 62
+LGP +GK+TLL +AG GEI NG P ++ + + Q + +
Sbjct: 30 ILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQENNLFAHL 86
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV + + G+ P L + A E VE++
Sbjct: 87 TVAQNIGL------------------------GLSP----GLKLNAEQREKVEAAAAQ-- 116
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
+GL + +SGGQ++RV +V L +DE + LD + +
Sbjct: 117 ----VGLAGF-----LKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE 167
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
++ + Q+ T+LM P + + D ++ L G+I QG + +L
Sbjct: 168 MLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 68/260 (26%), Positives = 104/260 (40%), Gaps = 52/260 (20%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKL-----NRDLKVRGEITYNGYRLNEFVPQKTS---AYI 52
+T LLG +GK+TLL ALAG L R +V G++T NG L + + A +
Sbjct: 29 VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVL 88
Query: 53 SQNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAME 112
Q + FSAR + + RY ARR AG + ++ +A A+
Sbjct: 89 PQ--------AAQPAFAFSAREIVLLGRY----PHARR---AGALTHRDGEIAWQALALA 133
Query: 113 GVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTT----GEMIVGPTKTLFM 168
G + + D T T+ G E+ R Q RV P + L +
Sbjct: 134 GATALVGRDVT-----------TLSGGELAR----VQFARVLAQLWPPHDAAQPPRYLLL 178
Query: 169 DEISTGLDSSTTYQI---VKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV 225
DE + LD + +++ V+ L + ++ I+ A D I +L++G IV
Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA----DRIAMLADGAIV 234
Query: 226 YQGPRERVL--EFFESC-GF 242
G VL C GF
Sbjct: 235 AHGAPADVLTPAHIARCYGF 254
|
Length = 272 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 30/167 (17%)
Query: 731 RPGVLAALMGVSGAGKT----TLMDVLAGRKTGGYIEGDIRISG-----FPKKQETFARI 781
G AL+G SG+GK+ +++ +L + G I G ++Q +
Sbjct: 34 EAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAASERQ--LRGV 90
Query: 782 SGYCEQNDIH----------SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL 831
G N I +P T+ + L LRL + +S+ E+++LV +
Sbjct: 91 RG----NKIGMIFQEPMTSLNPLHTIGKQLAEV--LRLHRGLSRAAARARALELLELVGI 144
Query: 832 ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
+ + P LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 145 PEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
DT + + + R SGG+++R+ +++ + +DE + GLD T Q++ + + +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE--VL 145
Query: 194 TDATILMSLLQPAPETFDL-----FDDIILLSEGQIVYQG 228
D T++ T L D I+ L G+I+ QG
Sbjct: 146 KDKTLIWI-------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 57/272 (20%), Positives = 107/272 (39%), Gaps = 77/272 (28%)
Query: 2 TLLLGPPSSGKTTLLLAL--AGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDV-- 57
T L+GP GK+TLL +L L +++ G++ ++G Y + DV
Sbjct: 30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG----------QDIYDKKIDVVE 79
Query: 58 ---HVG---------EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLF 105
VG M++ + + + R G+ + EL + K A ++ E + L
Sbjct: 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLH 139
Query: 106 MKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKT 165
A G+SGGQ++R+ + +
Sbjct: 140 DSAL----------------------------------GLSGGQQQRLCIARALAVEPEV 165
Query: 166 LFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILM---SLLQPAPETFDLFDDIILLSEG 222
L +DE ++ LD T +I + +Q++ TI++ ++ Q A + D +G
Sbjct: 166 LLLDEPTSALDPIATGKIEELIQEL--KKKYTIVIVTHNMQQAARIS----DRTAFFYDG 219
Query: 223 QIVYQGPRERVLEFFESCGFCCPERKGTADFL 254
++V GP E++ F + P+ K T D++
Sbjct: 220 ELVEYGPTEQI---FTN-----PKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 74/220 (33%)
Query: 704 VDMPPEMKEQGVA---EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVL 753
+ PP+M+ +G++ D L ++++ F + AL+G SG GK+T + D++
Sbjct: 1 MASPPKMEARGLSFFYGDFQAL-HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLI 59
Query: 754 AGRKTGGYIEGDIRISG--------------------------FPKKQ-ETFA---RISG 783
G + +EG+I + G FPK E A R++G
Sbjct: 60 PGAR----VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNG 115
Query: 784 YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG 843
++ + V+ SL ++A +EV D L ++ +GL G
Sbjct: 116 VKDKAYLAE---RVERSLRHAALW---------------DEVKD-----RLHESALGLSG 152
Query: 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
Q++RL IA L P ++ MDEP S LD A
Sbjct: 153 ------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 55/185 (29%)
Query: 737 ALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQND 789
A +G SG GK+T + D + K ++G++ I G D
Sbjct: 35 AFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGI-----------------D 73
Query: 790 IHSPQVTV---------------------KESLIYSAFLR-LAKEVSKEDKIIFVEEVMD 827
++S V +++ Y L LAK K D+I VE+ +
Sbjct: 74 VYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEI--VEKSLT 131
Query: 828 LVEL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
V L E L D + LS Q++RL IA + P+++ MDEP S LD A ++
Sbjct: 132 SVGLWEELGDRLKD--SAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIE 189
Query: 887 RTVRN 891
++
Sbjct: 190 NLIQE 194
|
Length = 251 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGGQK+RV + K L DE ++ LD +TT I++ L++I TIL+ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL-ITH 199
Query: 205 PAPETFDLFDDIILLSEGQIVYQG 228
+ D + ++S G+++ QG
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 20/163 (12%)
Query: 735 LAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG---FPKKQETFARIS--------G 783
+ A++G SG GK+T + L +EG +++ G F + RI+ G
Sbjct: 35 VTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 784 YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ESLKDAIVGLP 842
Q P +++ E++ Y +R++ ++ + D VE + L + +KD +
Sbjct: 92 MVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLN--K 146
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 147 SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 54/231 (23%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSA------YISQNDV 57
LLGP +GK+T+ L G ++ D RG+IT L E VP + + Q D
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSRARLARVAIGVVPQFDN 87
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
E TV+E L R G+ TR +E V S
Sbjct: 88 LDPEFTVRENLLVFGRYFGMSTR-----------------------------EIEAVIPS 118
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
L L+ L+ D V +SGG K+R+T ++ + L +DE +TGLD
Sbjct: 119 L-----LEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDP 168
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+ I + L+ ++ +L + E L D + +L G+ + +G
Sbjct: 169 HARHLIWERLRSLLARGKTILLTTHFMEEAER--LCDRLCVLESGRKIAEG 217
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 50/240 (20%), Positives = 100/240 (41%), Gaps = 51/240 (21%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVR-GEITYNGYRLNEFVPQKTSAYIS---QNDV 57
T L+GP GK+TLL A R L + G + ++ ++ + ++ Q+ +
Sbjct: 31 TALIGPNGCGKSTLLKCFA----RLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHL 86
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELAR-REKDAGIFPEAEIDLFMKATAMEGVES 116
+TV+E + + R LS R +D A ++ M+ T + +
Sbjct: 87 TPEGITVRELVAYG--------RSPWLSLWGRLSAED-----NARVNQAMEQTRINHLAD 133
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
+TD +SGGQ++R ++ T + +DE +T LD
Sbjct: 134 RRLTD-----------------------LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
Query: 177 SSTTYQIVKCLQQIVHV--TDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
+ ++++ ++++ T T+L L Q + D +++L+ G ++ QG E V+
Sbjct: 171 INHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC----DHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 56/249 (22%), Positives = 95/249 (38%), Gaps = 66/249 (26%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRL----NEFVPQKTSAYIS-QN--- 55
L+G SGK+TL LAG G I ++G L E + + Q+
Sbjct: 322 LVGESGSGKSTLARILAG---LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378
Query: 56 --DVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEG 113
+ MTV + L A L + + S RR +
Sbjct: 379 SLNPR---MTVGDIL---AEPLRI---HGGGSGAERRAR--------------------- 408
Query: 114 VESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG-EMIVGPTKTLFMDEIS 172
L+++GL D +SGGQ++RV + + P K L +DE
Sbjct: 409 ------VAELLELVGLP----PEFLDRYPHELSGGQRQRVAIARALALEP-KLLILDEPV 457
Query: 173 TGLDSSTTYQIVKCLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQIVYQ 227
+ LD S Q++ L+ + T L +++++ + D + ++ +G+IV +
Sbjct: 458 SALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVR------YIADRVAVMYDGRIVEE 511
Query: 228 GPRERVLEF 236
GP E+V E
Sbjct: 512 GPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 3e-04
Identities = 46/213 (21%), Positives = 81/213 (38%), Gaps = 28/213 (13%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAG-RKTGGYIEGDIRISGFPKKQETFARIS-----GY 784
R G + + GV+G G++ L++ ++G RK G I ++G R Y
Sbjct: 282 RAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAY 338
Query: 785 CEQNDIH---SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
++ +++ E+L+ + + E +++ V
Sbjct: 339 VPEDRHGHGLVLDLSLAENLVLGRH-DKKPFSRG--GFLDRRAIRKFAR-ELIEEFDVRA 394
Query: 842 PG----VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 897
P LS +++L +A EL P ++ +PT GLD A + + D G+
Sbjct: 395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGK 454
Query: 898 TVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
V+ I E DE+L L VIY G
Sbjct: 455 AVLL--------ISEDLDEILELSDRIAVIYEG 479
|
Length = 501 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-04
Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEIT-YNGYRLNEFVPQKTSAYISQNDVHVGEM 62
L+G +GK+TLL LAG+L D GE+T G R+ Y+SQ E
Sbjct: 34 LVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGLRV---------GYLSQEPPLDPEK 81
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATA-MEGVESSLITD 121
TV + + G G ELL+EL + + ++G +
Sbjct: 82 TVLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136
Query: 122 YTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
L LG +D V +SGG ++RV ++ L +DE + LD
Sbjct: 137 EALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 45/238 (18%), Positives = 91/238 (38%), Gaps = 44/238 (18%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQ--NDVH 58
L+G SGK+TL+ + D G+I +G+ L ++ ++ DV
Sbjct: 360 TVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVV 416
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEI-DLFMKATAMEGVESS 117
+ T+ + + AEI A A + V+
Sbjct: 417 LFNDTIANNIAYGRT---------------------EQADRAEIERALAAAYAQDFVD-- 453
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
L + DT +G+ +SGGQ++R+ ++ L +DE ++ LD+
Sbjct: 454 ----------KLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDN 502
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+ + L++++ ++ L T + D I+++ +G+IV +G +L
Sbjct: 503 ESERLVQAALERLMQGRTTLVIAHRLS----TIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 60/261 (22%), Positives = 93/261 (35%), Gaps = 96/261 (36%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG-----YRLNEFVPQKTSAYISQNDVH 58
L+GP +GK+TLL +AG L G I + G + E + AY+SQ
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPGS----GSIQFAGQPLEAWSAAELARHR--AYLSQQQTP 80
Query: 59 VGEMTVKETLDFSARCLGVGTR----YELLSELARREKDAGIFPEAEIDLFMKATAMEGV 114
M V + L TR L+E+A
Sbjct: 81 PFAMPVFQYLTLH---QPDKTRTEAVASALNEVAEA------------------------ 113
Query: 115 ESSLITDYTLKILGLDICKDTIVGDEMNRGI---SGGQKKRVTTGEMI--VGPT-----K 164
LGLD D++ R + SGG+ +RV ++ V P +
Sbjct: 114 ------------LGLD--------DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQ 153
Query: 165 TLFMDEISTGLD---SSTTYQIVK--CLQQIVHVTDATILMS------LLQPAPETFDLF 213
L +DE LD + +++ C Q I ++MS L+ A
Sbjct: 154 LLLLDEPMNSLDVAQQAALDRLLSELCQQGI------AVVMSSHDLNHTLRHA------- 200
Query: 214 DDIILLSEGQIVYQGPRERVL 234
D + LL +G+++ G R+ VL
Sbjct: 201 DRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 57/251 (22%), Positives = 104/251 (41%), Gaps = 41/251 (16%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLN---RDLKVRGEITYNGYRLNEFVPQKTSAYISQNDV 57
+T L+GP GK+T L L ++N ++K+ GE+ +G I DV
Sbjct: 32 ITALIGPSGCGKSTFLRCL-NRMNDLISNVKIEGEVLLDGKN------------IYDKDV 78
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
V E+ + + F + Y+ +A + GI + E+D
Sbjct: 79 DVVELRKRVGMVFQKPNPFPMSIYD---NVAYGPRIHGIKDKKELDK------------- 122
Query: 118 LITDYTLKILGL-DICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
I ++ LK L D KD + + +SGGQ++R+ I + MDE ++ LD
Sbjct: 123 -IVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
Query: 177 SSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFD-----LFDDIILLSEGQIVYQGPRE 231
+T +I + ++ I+ +Q A D L D+I ++ + ++ P++
Sbjct: 180 PISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQK 239
Query: 232 RVLEFFESCGF 242
+ E + S F
Sbjct: 240 KETEDYISGRF 250
|
Length = 251 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 16/170 (9%)
Query: 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIRISGF 771
++ LN V+ G + ++G SGAGK+TL+ ++L +G I ++
Sbjct: 13 QGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL 72
Query: 772 PKKQETFAR--ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKI-IFVEEVMDL 828
+ T AR I + ++ S + TV ++ L L + + +D+I V E++ L
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSR-TVFGNVA----LPLELDNTPKDEIKRKVTELLAL 127
Query: 829 VELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
V L D+ P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 128 VGLGDKHDS---YP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK--KQ 775
D ++L V+ + A++G SG GK+T + L +E ++R+ G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 776 ETFAR---ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
+ R ++ Q + P+ + +Y K V K+ E+ D+VE
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKL----EIDDIVE-S 129
Query: 833 SLKDAIVG-------LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
+LKDA + LS Q++RL IA L P ++ MDEP GLD A+ V
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189
Query: 886 MRTVRN 891
+++
Sbjct: 190 ESLIQS 195
|
Length = 261 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 70/186 (37%)
Query: 737 ALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQND 789
A +G SG GK+TL+ D++ + IEG+IR+ G +
Sbjct: 55 AFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDG-----------------QN 93
Query: 790 IHSPQVTVK---------------------ESLIYSAFLRLAKEVSKEDKIIFVEEVMDL 828
I+ +V V E+++Y LRL ++ V+D
Sbjct: 94 IYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYG--LRLQGINNRR--------VLDE 143
Query: 829 VELESLKDAIVGL---------PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879
SL+ A L GLS Q++RL IA + P ++ +DEPTS LD
Sbjct: 144 AVERSLRGA--ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDP 201
Query: 880 RAAAIV 885
+ +
Sbjct: 202 ISTLKI 207
|
Length = 272 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 53/237 (22%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+ LLGP +GKTT + G L GEIT+NG L++ + + Y+ +
Sbjct: 30 IFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRI-GYLPEERGLYP 85
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
+MTV++ L + A G+ + + + ++ +++ + G ++ I
Sbjct: 86 KMTVEDQLKYLAELKGM------------PKAEI----QKKLQAWLERLEIVGKKTKKIK 129
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
+ + G Q+K +I P + L +DE +GLD
Sbjct: 130 ELS----------------------KGNQQKIQFISAVIHEP-ELLILDEPFSGLDPVNV 166
Query: 181 YQIVKCLQQIVHVTD--ATILMS--LLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233
+++K I + + ATI+ S ++ E L D +++L +GQ V G E +
Sbjct: 167 -ELLK--DAIFELKEEGATIIFSSHRMEHVEE---LCDRLLMLKKGQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 51/235 (21%), Positives = 85/235 (36%), Gaps = 51/235 (21%)
Query: 4 LLGPPSSGKTTLLLALAG---KLNRDLKV----RGEITYNGYRLNEFVPQKTSAYIS--- 53
++GP +GKTTLL L G + D+ + G+ F +K +S
Sbjct: 62 IVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI------FELRKRIGLVSSEL 115
Query: 54 QNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEG 113
V E TV++ + S Y+ +
Sbjct: 116 HERFRVRE-TVRDVV-LSGF-FASIGIYQEDLTAEDLAAAQWL----------------- 155
Query: 114 VESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 173
L++LG D G +S G+++RV +V + L +DE +
Sbjct: 156 ----------LELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 174 GLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
GLD Q++ L+++ A L+ + A E F +LL EG++V QG
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 46/178 (25%), Positives = 62/178 (34%), Gaps = 47/178 (26%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVH 58
+ GP +GKTTLL LAG L D GE+ + G + + Y+
Sbjct: 30 ALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
E+T E L F R G G A I EA
Sbjct: 87 KTELTALENLHFWQRFHGSGN-------------AATI-WEA------------------ 114
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
L +GL +D VG +S GQ++RV + + P +DE T LD
Sbjct: 115 -----LAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 45/234 (19%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG---YRLNEFVPQKTSAYISQNDV 57
++GP SGK+TL+ L + GEI +G ++ +K +SQ D
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQ-DP 412
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
+ T++E + T E+ L A F
Sbjct: 413 LLFSGTIRENIALGRPDA---TDEEIEEALKL----------ANAHEF------------ 447
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
I L DTIVG E +SGGQ++R+ ++ L +DE ++ LD+
Sbjct: 448 --------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231
T I L++++ T L+ + + T D II+L G+IV +G E
Sbjct: 499 ETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDNGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 40/179 (22%), Positives = 65/179 (36%), Gaps = 47/179 (26%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP--QKTSAYISQNDVHVGE 61
L+GP GK+TLL + G L GE+ N RL+ +P Q+ + Q+ +
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAAQRQIGILFQDALLFPH 91
Query: 62 MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITD 121
++V + L LF ++G +
Sbjct: 92 LSVGQNL-----------------------------------LFALPATLKGNARRNAAN 116
Query: 122 YTLKILGLD--ICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
L+ GLD +D +SGGQ+ RV ++ K L +DE + LD +
Sbjct: 117 AALERSGLDGAFHQDP-------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 79/255 (30%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGE-- 61
L+G SGK+TL LAL R + +GEI ++G ++ ++ + V V +
Sbjct: 318 LVGESGSGKSTLGLALL----RLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQV-VFQDP 372
Query: 62 -------MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGV 114
MTV + ++ R LS R + A+E V
Sbjct: 373 YGSLSPRMTVGQIIEEGLRVHEPK-----LSAAERDQ--------------RVIEALEEV 413
Query: 115 ESSLITDYTLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGEMIVGPTKTLFMDEI 171
GLD NR SGGQ++R+ ++ + + +DE
Sbjct: 414 -------------GLD-------PATRNRYPHEFSGGQRQRIAIARALILKPELILLDEP 453
Query: 172 STGLDSSTTYQIV---KCLQQ--------IVHVTDATILMSLLQPAPETFDLFDDIILLS 220
++ LD S Q++ + LQQ I H D ++ +L +I++
Sbjct: 454 TSALDRSVQAQVLDLLRDLQQKHGLSYLFISH--DLAVVRALC----------HRVIVMR 501
Query: 221 EGQIVYQGPRERVLE 235
+G+IV QGP E V
Sbjct: 502 DGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 23/156 (14%)
Query: 733 GVLAALMGVSGAGKTTLMDVLAGRKTGG----YIEGDIRISGFPKKQETFARISGYCEQN 788
G A++G +G GK+TL+ L+ T +++G+ I + K+ AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE-HIQHYASKE--VARRIGLLAQN 89
Query: 789 DIHSPQVTVKESLIYS------AFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842
+TV+E + F R KE E+ V + M + L D
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRWRKE--DEEA---VTKAMQATGITHLADQ----- 139
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-04
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 27/216 (12%)
Query: 725 EVTSAFRPGVLAALMGVSGAGKTTLMDVL--AGRKTGGYIEGD-IRISGFPKKQETFARI 781
+V+ + G A++G +GAGKTTL+++L T G I D I I+ ++ R
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRES---LRK 409
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVM---DLVELESLK-DA 837
S D +++E+ +RL +E + ++++ + D + S D
Sbjct: 410 SIATVFQDAGLFNRSIREN------IRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDT 463
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-- 895
+VG G LS +R+RL IA ++ N I+ +DE TS LD A V+N +D
Sbjct: 464 LVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKNAIDALR 518
Query: 896 -GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
RT H+ S + A +L+L G++I G
Sbjct: 519 KNRTTFIIAHRLST-VRNA--DLVLFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGY 761
E+K+ + + R +N+++ + AL+G SG GK+T + D++ ++
Sbjct: 23 EVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS--- 79
Query: 762 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF 821
EG+I G ++ E + +S IY+ K + K +
Sbjct: 80 -EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKS-IYNNITHALKYAGERRKSVL 137
Query: 822 VEEVMDLVELESLKDAIVGLPGVTGLSIE--QRKRLTIAVELVANPSIIFMDEPTSGLD 878
E V + + +L D + + LS+ Q++RL IA L P+++ +DEP S LD
Sbjct: 138 DEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 48/186 (25%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIRISGFPKKQ 775
K L + F + AL+G SG GK+T + L G I G++ + G
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG----- 71
Query: 776 ETFARISGYCEQNDIHSPQV---------------------TVKESLIYSAFLRLAKEVS 814
+I++P ++ E++IY LRLA
Sbjct: 72 ------------QNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYG--LRLA---G 114
Query: 815 KEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE--QRKRLTIAVELVANPSIIFMDE 872
+DK + E V ++ ++ D + + LS+ Q++R+ IA L P +I +DE
Sbjct: 115 VKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDE 174
Query: 873 PTSGLD 878
PTS LD
Sbjct: 175 PTSALD 180
|
Length = 252 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 26/169 (15%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTT----LMDVLAGRKTGGYIEGDIRISGFPKKQETF 778
+ ++ RPG L+G SG+GK+T L+ ++ + G+I G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 779 ARISGYCEQ--------NDIHSPQVTVKESLIYSAFLRL-AKEVSKEDKIIFVEEVMDLV 829
++ + N +P++ V + I LR+ +S + V VM+ V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 830 ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
L D S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 413 GL----DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 47/179 (26%), Positives = 67/179 (37%), Gaps = 52/179 (29%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSA------YISQNDV 57
LLGP +GK+T+ + G + D G+IT L VP + + Q D
Sbjct: 72 LLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPARARLARARIGVVPQFDN 124
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
E TV+E L R G M +E V S
Sbjct: 125 LDLEFTVRENLLVFGRYFG-----------------------------MSTREIEAVIPS 155
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
L L+ L+ D V D +SGG K+R+T ++ + L +DE +TGLD
Sbjct: 156 L-----LEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 126 ILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK 185
I L +T VG E +SGGQ++R+ +VG + L DE ++ LD + I++
Sbjct: 576 ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 186 CLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
+++I I+ L T D II+L +GQI G E +L
Sbjct: 635 NMREICRGRTVIIIAHRLS----TVRACDRIIVLEKGQIAESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 107 KATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTL 166
++ A E VESSL ++ D KD + + M +SGGQ++R+ I + +
Sbjct: 118 RSEADEIVESSL-----KRVALWDEVKDRLKSNAME--LSGGQQQRLCIARTIAVKPEVI 170
Query: 167 FMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVY 226
MDE ++ LD +T +I + ++++ I+ +Q A D G +V
Sbjct: 171 LMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDY---TAFFYMGDLVE 227
Query: 227 QGPRERVLEFFESCGFCCPERKGTADFL 254
G +++ F PE+K T D++
Sbjct: 228 CGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 10/108 (9%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI---VKCLQQIVHVTDATILMS 201
+SGGQK+RV ++ K L +DE + GLD +I +K L + ++T IL+S
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMT--IILVS 202
Query: 202 LLQPAPETFDLFDDIILLSEGQIVYQG-PRE--RVLEFFESCGFCCPE 246
+ L D II++++G+ QG PRE + +E ES G P+
Sbjct: 203 --HSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 5e-04
Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 51/147 (34%)
Query: 737 ALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIRISGFPKKQETFARISGYCEQNDIHS 792
L+G SG GK+TL ++ G T G EG DI
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSGEILFEGK-----------------------DIT- 78
Query: 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852
++SKE++ V E+++ V L ++ + P LS QR
Sbjct: 79 -------------------KLSKEERRERVLELLEKVGLP--EEFLYRYPH--ELSGGQR 115
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDA 879
+R+ IA L NP +I DEP S LD
Sbjct: 116 QRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 6e-04
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGGQ++R+ ++ L +DE ++ LD T I++ L+ + T+++
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVI--- 151
Query: 205 PA--PETFDLFDDIILLSEGQ 223
A T D II+L +G+
Sbjct: 152 -AHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 52/238 (21%), Positives = 83/238 (34%), Gaps = 68/238 (28%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGY----------RLNEFVPQKTSAYIS 53
LGP +GKTT + L L G GY R VPQ S
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 54 QNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEG 113
++T +E L+ R G L + E + E+ +E
Sbjct: 80 -------DLTGRENLEMMGRLYG----------LPKDEAEERA---EEL--------LEL 111
Query: 114 VESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 173
E + + D SGG ++R+ ++ LF+DE +T
Sbjct: 112 FE---LGEA---------------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 174 GLDSST---TYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
GLD T + ++ L++ TIL++ E L D I ++ G+I+ +G
Sbjct: 154 GLDPRTRRAIWDYIRALKE----EGVTILLT-THYMEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-04
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQK 47
+ +LGP +GK+TLL AL+G+L+ D GE+ NG L ++ P +
Sbjct: 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAE 73
|
Length = 258 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 64/263 (24%), Positives = 100/263 (38%), Gaps = 83/263 (31%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
M LLGP SGKTTLL +AG ++ G I ++G + + D VG
Sbjct: 30 MVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHG---------TDVSRLHARDRKVG 77
Query: 61 ----------EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATA 110
MTV + + F L+ L RRE+ A I K T
Sbjct: 78 FVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNA----AAIK--AKVTQ 119
Query: 111 MEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDE 170
+ L++ + + D +SGGQK+RV + + L +DE
Sbjct: 120 L-----------------LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162
Query: 171 ISTGLDSSTTYQIVKCLQQI--------VHVTDATILMSLLQPAPETFDLFDDIILLSEG 222
LD+ ++ + L+Q+ V VT E ++ D ++++S+G
Sbjct: 163 PFGALDAQVRKELRRWLRQLHEELKFTSVFVT---------HDQEEAMEVADRVVVMSQG 213
Query: 223 QI--------VYQGPRER-VLEF 236
I V++ P R VLEF
Sbjct: 214 NIEQAGTPDQVWREPATRFVLEF 236
|
Length = 353 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 56/239 (23%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG--- 60
++GP SGK+TL +AG + + G+I + G + + P++ + H+G
Sbjct: 38 IMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEERA--------HLGIFL 88
Query: 61 ------EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGV 114
E+ DF L + K G+ PE + F++
Sbjct: 89 AFQYPIEIPGVSNADF------------LRLAYNSKRKFQGL-PELDPLEFLE------- 128
Query: 115 ESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 174
+I + LK++G+D + + +N G SGG+KKR +M + ++ +DE +G
Sbjct: 129 ---IINE-KLKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSG 181
Query: 175 LDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDII-----LLSEGQIVYQG 228
LD I + + +++ ++ IL++ Q L D I ++ G+I+ G
Sbjct: 182 LDIDALKIIAEGINKLMTSENSIILITHYQ------RLLDYIKPDYVHVMQNGKIIKTG 234
|
Length = 252 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 844 VTGLSIEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 900 VCTIHQPSIDIFEAFDELLLLKR 922
+ H P ++ E D+L+ +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 29/175 (16%)
Query: 737 ALMGVSGAGKT----TLMDVLAGRKTGGYIEGD-----------IRISGFPKKQETFARI 781
A++G SG+GK+ LM +L + GG ++ D I +S Q +
Sbjct: 46 AIVGESGSGKSVTALALMRLL--EQAGGLVQCDKMLLRRRSRQVIELSEQSAAQ--MRHV 101
Query: 782 SG------YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
G + E +P TV E + S +RL + S+E+ ++ + ++D V + +
Sbjct: 102 RGADMAMIFQEPMTSLNPVFTVGEQIAES--IRLHQGASREEAMVEAKRMLDQVRIPEAQ 159
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
+ P LS R+R+ IA+ L P+++ DEPT+ LD A +++ ++
Sbjct: 160 TILSRYP--HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIK 212
|
Length = 623 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 7e-04
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 146 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMS--LL 203
SGG K+R+ + ++ + L +DE ++GLD + + + L+++ TIL+S +L
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHIL 155
Query: 204 QPAPETFDLFDDIILLSEGQI 224
+ A L D + +L+ G+I
Sbjct: 156 EEAER---LCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 7e-04
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 134 DTIVGDEMNRG--ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV 191
DT+VG+ RG +SGGQK+R+ ++ K L +DE ++ LD+ + + + L +
Sbjct: 130 DTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA- 185
Query: 192 HVTDATILM-----SLLQPAPETFDLFDDIILLSEGQIVYQG 228
+ T ++ S ++ A D I +L GQ+V QG
Sbjct: 186 -MKGRTTIVIAHRLSTIRNA-------DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 34/216 (15%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETF 778
L V +PG + + G +G+GK+TL+ ++ ++ EGDIR P +
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
+R++ + + S V + + L + + + +I E V L S+ D I
Sbjct: 389 SRLAVVSQTPFLFSDTV--------ANNIALGRPDATQQEI---EHV---ARLASVHDDI 434
Query: 839 VGLP----------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 888
+ LP GV LS Q++R++IA L+ N I+ +D+ S +D R ++
Sbjct: 435 LRLPQGYDTEVGERGVM-LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN 493
Query: 889 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924
+R + GRTV+ + H+ S + EA E+L+++ G
Sbjct: 494 LRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 8e-04
Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 38/258 (14%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGE 61
T L+G SGK+TLL L G L + T + + V TS Q ++
Sbjct: 35 TALIGHTGSGKSTLLQHLNGLL--------QPTEGKVTVGDIVVSSTS---KQKEIKPVR 83
Query: 62 MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITD 121
V F L T +L ++A ++ GI E ++ I
Sbjct: 84 KKVGVVFQFPESQLFEET---VLKDVAFGPQNFGIPKE---------------KAEKIAA 125
Query: 122 YTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTY 181
L+++GL ++ +SGGQ +RV ++ + L +DE + GLD
Sbjct: 126 EKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARI 181
Query: 182 QIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV---LEFFE 238
++++ + I +L++ L + D D + LL +G I+ G V ++F +
Sbjct: 182 EMMQLFESIHQSGQTVVLVTHLM--DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLK 239
Query: 239 SCGFCCPERKGTADFLQE 256
+ P+ AD LQ+
Sbjct: 240 AHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 5 LGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRL--NEFVPQKTSAYISQNDVHVGEM 62
LGP +GK+T + + G L D G + G + N Q+ Y+ +++ +M
Sbjct: 34 LGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
V+E L F A G+ + L + + G+ PE
Sbjct: 91 YVREYLQFIAGIYGMKGQ-LLKQRVEEMIELVGLRPEQH--------------------- 128
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
K +G +S G ++RV + ++ K L +DE +TGLD + +
Sbjct: 129 --KKIG---------------QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVE 171
Query: 183 IVKCLQQIVHVTDATILMS--LLQPAPETFDLFDDIILLSEGQIV 225
I ++ I D TI++S ++Q E + D +I++++G+IV
Sbjct: 172 IRNVIKNI--GKDKTIILSTHIMQ---EVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 904
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 51/227 (22%), Positives = 95/227 (41%), Gaps = 49/227 (21%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
LLGP +GKTT + + G + D GE+ ++G L + + Y+ + +M
Sbjct: 31 LLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPL-DIAARNRIGYLPEERGLYPKMK 86
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
V + L + A+ G+ ARR D E +E +++Y
Sbjct: 87 VIDQLVYLAQLKGLKKEE------ARRRID------------------EWLERLELSEYA 122
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI 183
K + +E+ S G +++V ++ + L +DE +GLD ++
Sbjct: 123 NKRV-----------EEL----SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV-EL 166
Query: 184 VKCLQQIVHVTDA--TILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+K I + A T+++S Q +L D ++LL++G+ V G
Sbjct: 167 LK--DVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 62/257 (24%), Positives = 93/257 (36%), Gaps = 69/257 (26%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLK-VRGEITYNGYRLNEFVPQK---TSAYISQND 56
+L+GP SGKTT L +NR ++ GEI +G +++ P + Y+ Q
Sbjct: 29 FLVLIGPSGSGKTTTL----KMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQI 84
Query: 57 VHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116
+TV E + + LG + I
Sbjct: 85 GLFPHLTVAENIATVPKLLGW--------------------DKERIKK------------ 112
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
D L ++GLD + D +SGGQ++RV + L MDE LD
Sbjct: 113 --RADELLDLVGLDPSE---YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 177 SSTTYQI---VKCLQQ-----IVHVT-DATILMSLLQPAPETFDLFDDIILLSEGQIVYQ 227
T Q+ +K LQ+ IV VT D E L D I ++ G+IV
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDID----------EALKLADRIAVMDAGEIVQY 217
Query: 228 GPRERVL-----EFFES 239
+ +L +F E
Sbjct: 218 DTPDEILANPANDFVED 234
|
Length = 309 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 51/226 (22%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVH-VGEM 62
LLGP +GK+TLL + G L GEI ++G+ ++ D+H +G +
Sbjct: 31 LLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW------------TRKDLHKIGSL 75
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
L YE L+ A +L + T + G+ S I D
Sbjct: 76 IESPPL------------YENLT--------------ARENLKVHTT-LLGLPDSRI-DE 107
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
L I+ L S G K+R+ ++ K L +DE + GLD +
Sbjct: 108 VLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQE 162
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+ + ++ IL S + E L D I ++SEG + YQG
Sbjct: 163 LRELIRSFPEQGITVILSSHI--LSEVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 140 EMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATIL 199
+N G SGG+KKR ++++ +DE +GLD + + + ++ + ++
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 200 MSLLQPAPETFDLFDDII-----LLSEGQIVYQGPRERVLEFFE 238
++ Q L D I +L +G+IV G +E LE +
Sbjct: 160 ITHYQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 58/250 (23%), Positives = 82/250 (32%), Gaps = 85/250 (34%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHV---- 59
LLGP GKTT+L +AG D G I +G + + V+
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE-------NRHVNTVFQS 94
Query: 60 ----GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEID-LFMKATAMEGV 114
MTV E + F R P AEI M+A M +
Sbjct: 95 YALFPHMTVFENVAFGLRMQKT--------------------PAAEITPRVMEALRMVQL 134
Query: 115 ESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 174
E +SGGQ++RV +V K L +DE +
Sbjct: 135 EE--------------------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174
Query: 175 LDSSTTYQIVKCLQQ------------IVHVTDATILMSLLQPAPETFDLFDDIILLSEG 222
LD Y++ K +Q V VT E + D I+++ +G
Sbjct: 175 LD----YKLRKQMQNELKALQRKLGITFVFVT---------HDQEEALTMSDRIVVMRDG 221
Query: 223 QIVYQG-PRE 231
+I G PRE
Sbjct: 222 RIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 27/173 (15%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
++GP SGK+TL LAG+ + ++ G + + G L E P+ + GE
Sbjct: 32 IMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPEDRA----------GE-G 79
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
+ + GV ++ L + L G + +D F ME
Sbjct: 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG---QEPLDRFDFQDLMEE---------- 126
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
KI L + +D ++ +N G SGG+KKR +M V + +DE +GLD
Sbjct: 127 -KIALLKMPED-LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.001
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 112 EGVESSLITDYTLKILGLDICK------DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKT 165
+ ++ S + D + K+L D +T+VG ++ +SGGQK+R++ I+ K
Sbjct: 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASK-LSGGQKQRISIARAIIRNPKI 600
Query: 166 LFMDEISTGLDSSTTYQIVKCLQQI 190
L +DE ++ LD+ + Y + K + +
Sbjct: 601 LILDEATSSLDNKSEYLVQKTINNL 625
|
Length = 1466 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILM---S 201
+SGGQ++RV +V L +DE + LD + +++ + Q+ T+LM S
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189
Query: 202 L---LQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
L + AP + +++++G+I + GP + +L
Sbjct: 190 LEDAARIAPRS-------LVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 55/224 (24%), Positives = 81/224 (36%), Gaps = 63/224 (28%)
Query: 682 PKRGMVLPFTPLAMSFD--SVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALM 739
+ + P +A+S VYY K + + F + AL+
Sbjct: 8 ERHIITFPEEEIALSTKDLHVYY---------------GKKEAIKGIDMQFEKNKITALI 52
Query: 740 GVSGAGKTTLMDVLA---GRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT 796
G SG+GK+T + L + G I G DI+ ++
Sbjct: 53 GPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-----------------DINRKEIN 95
Query: 797 VKE--SLIYSAFLR---LAKEVSKEDKIIFV---------EEVMDLVELESLKDAI---- 838
V E I F R AK S + I F + + ++VE SLK A
Sbjct: 96 VYEMRKHIGMVFQRPNPFAK--SIYENITFALERAGVKDKKVLDEIVE-TSLKQAALWDQ 152
Query: 839 ----VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
+ +T LS Q++RL IA + P I+ MDEP S LD
Sbjct: 153 VKDDLHKSALT-LSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS---AYISQ 54
+ +LGP +GK+TLL LAG L GEI +G L P++ + AY+ Q
Sbjct: 27 IVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 57/240 (23%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYIS--QNDVHVGE 61
L+G SGK+T+ +AG L + GEI ++G E + + ++ D+ + E
Sbjct: 510 LVGGSGSGKSTIAKLVAG-LYQPW--SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE 566
Query: 62 MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITD 121
TV++ L L T + ++L R KDA I D+ G ++ L
Sbjct: 567 GTVRDNLT-----LWDPTIPD--ADLVRACKDAAIH-----DVITSRPG--GYDAELA-- 610
Query: 122 YTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTY 181
E +SGGQ++R+ +V L +DE ++ LD T
Sbjct: 611 ------------------EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEK 652
Query: 182 QIVK------CLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
I C IV +TI D+II+L G++V +G E +
Sbjct: 653 IIDDNLRRRGCTCIIVAHRLSTIRDC------------DEIIVLERGKVVQRGTHEELWA 700
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 58/251 (23%), Positives = 88/251 (35%), Gaps = 80/251 (31%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG-----YRLNEFVPQKTSAYISQNDVH 58
L+GP +GK+TLL +AG + G I + G + E + AY+SQ
Sbjct: 30 LVGPNGAGKSTLLARMAGMTS----GSGSIQFAGQPLEAWSATELARHR--AYLSQQQTP 83
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
M V L TR ELL+++A
Sbjct: 84 PFAMPVWHYLTLHQP---DKTRTELLNDVAG----------------------------- 111
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGI---SGGQKKRVTTGEMI--VGP-----TKTLFM 168
L LD D++ R SGG+ +RV ++ + P + L +
Sbjct: 112 -------ALALD--------DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156
Query: 169 DEISTGLD---SSTTYQIVK--CLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQ 223
DE LD S +++ C Q + V + L L+ A LL G+
Sbjct: 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-------HRAWLLKRGK 209
Query: 224 IVYQGPRERVL 234
++ G RE VL
Sbjct: 210 LLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQ 204
+SGGQK+RV ++ + + DE ++ LD +I K + + T++ S+
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLI-SITH 201
Query: 205 PAPETFDLFDDIILLSEGQIVYQG-PRE 231
E L D +I+ SEG+++ QG P+E
Sbjct: 202 DMDEAI-LADKVIVFSEGKLIAQGKPKE 228
|
Length = 271 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 14/168 (8%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVL--AGRKTGGYIEGDIRISGFPKKQETFAR 780
+N+V+ R G + + G+ GAG+T LM VL A +T GY+ D Q+ A
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 781 ISGYCEQNDIHSPQV---TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK-- 835
Y ++ V +VKE++ +A ++ + V D + L ++K
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP 387
Query: 836 --DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881
+ +GL LS ++++ IA L+ P ++ +DEPT G+D A
Sbjct: 388 SMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
|
Length = 501 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 143 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSL 202
R +SGG+K+RV + DE + LD T + L++ V + I M L
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEA--VKASGISMVL 224
Query: 203 LQPAPETF-DLFDDIILLSEGQIVYQG-PRERVLEFFES 239
PE DL D I L G+I +G P E V F E
Sbjct: 225 TSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEG 263
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 811 KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870
++V + K ++E ++ L + D VG P LS Q++R+ IA L+ P I+ +
Sbjct: 1326 EDVKRACKFAAIDEFIE--SLPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLL 1382
Query: 871 DEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 905
DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRD 26
L++GPP SGKTTL ALA +L
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 46/219 (21%), Positives = 85/219 (38%), Gaps = 68/219 (31%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDL---KVRGEITYNGYRLNEFVPQKTSAYISQNDV 57
+T L+GP SGK+T L +L ++N + +V G+I Y G +N + ++
Sbjct: 48 ITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRGIDIN------------RKEI 94
Query: 58 HVGEM----------------TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAE 101
+V EM ++ E + F+ GV + L + K A ++ + +
Sbjct: 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK 154
Query: 102 IDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVG 161
DL A + SGGQ++R+ I
Sbjct: 155 DDLHKSALTL----------------------------------SGGQQQRLCIARAIAV 180
Query: 162 PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILM 200
L MDE ++ LD +T Q+ + + ++ + TI++
Sbjct: 181 KPDILLMDEPASALDPISTMQLEETMFEL--KKNYTIII 217
|
Length = 267 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 23/177 (12%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYI--EG 764
+++ G ++LN ++ + R G + G SG GK+TL+ ++A T G + EG
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68
Query: 765 DIRISGFPKKQETFARISGYCEQNDIHSPQV---TVKESLIYSAFLRLAKEVSKEDKIIF 821
+ IS E + + YC Q +P + TV ++LI+ +R + +
Sbjct: 69 E-DISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR--NQQPDPAIFL- 118
Query: 822 VEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
DL L D I+ + LS +++R+++ L P ++ +DE TS LD
Sbjct: 119 ----DDLERFA-LPDTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 32/236 (13%)
Query: 711 KEQGVAEDKLRL-LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG--YIEG- 764
KEQ + + L L + + + A G + +MG+SG+GK+T++ +L T G I+G
Sbjct: 31 KEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGV 90
Query: 765 DIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEE 824
DI + +E + Q+ P +TV ++ + + LA ++E + E+
Sbjct: 91 DIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFG--MELAGINAEERR----EK 144
Query: 825 VMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+D + L++ P LS R+R+ +A L NP I+ MDE S LD
Sbjct: 145 ALDALRQVGLENYAHSYP--DELSGGMRQRVGLARALAINPDILLMDEAFSALDP----- 197
Query: 885 VMRT------VRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGP 931
++RT V+ RT+V H D+ EA D + +++ G V P
Sbjct: 198 LIRTEMQDELVKLQAKHQRTIVFISH----DLDEAMRIGDRIAIMQNGEVVQVGTP 249
|
Length = 400 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.002
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 855 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 908
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 27/163 (16%)
Query: 730 FRPGVLAALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIRISGFPKKQETFARISGYCEQ 787
+ ++G +G GKTT + +LAG G IE ++ + K Q A G
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG---- 76
Query: 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGL 847
TV+ L + F E+ +++E + D V L
Sbjct: 77 --------TVR------DLLS-SITKDFYTHPYFKTEIAKPLQIEQILDR-----EVPEL 116
Query: 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
S + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 117 SGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 58/243 (23%), Positives = 95/243 (39%), Gaps = 55/243 (22%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS---AYISQNDV 57
+T LLGP SGK+TLL LAG L D G + G L+ + + A + Q+
Sbjct: 29 LTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
+TV++ + L + R AG P D + A+ E S
Sbjct: 86 TAVPLTVRDVV--------------ALGRIPHRSLWAGDSPH---DAAVVDRALARTELS 128
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
+ D + L SGG+++RV + K L +DE + LD
Sbjct: 129 HLADRDMSTL------------------SGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDL------FDDIILLSEGQIVYQGPRE 231
+ + ++++ T T++ +L DL D +++L G++V GP
Sbjct: 171 RAQLETLALVRELAA-TGVTVVAAL-------HDLNLAASYCDHVVVLDGGRVVAAGPPR 222
Query: 232 RVL 234
VL
Sbjct: 223 EVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 63/258 (24%), Positives = 105/258 (40%), Gaps = 63/258 (24%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHVGEM 62
LLGP GKTTLL +AG GEI +G + + P+K + Q+ M
Sbjct: 36 LLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV+E + F L R+K +AEI +
Sbjct: 93 TVEENVAF---------------GLKVRKKL----KKAEIKA--RVEEA----------- 120
Query: 123 TLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
L+++GL+ +R +SGGQ++RV +V K L +DE + LD+
Sbjct: 121 -LELVGLE--------GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL 171
Query: 180 TYQI---VKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEF 236
Q+ +K LQ+ + +T + ++ E + D I ++++G+I G E +
Sbjct: 172 REQMRKELKELQRELGIT--FVYVT--HDQEEALAMSDRIAVMNDGRIEQVGTPEEI--- 224
Query: 237 FESCGFCCPERKGTADFL 254
+ P + ADF+
Sbjct: 225 -----YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 51/254 (20%), Positives = 90/254 (35%), Gaps = 82/254 (32%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDV--- 57
L GP +GK+TLL + G+ RG+I NG+ L+ + ++
Sbjct: 30 FVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSR---------LKGREIPFL 77
Query: 58 --HVG----------EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLF 105
+G + TV E + R +G P EI
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGK--------------------PPREI--- 114
Query: 106 MKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGEMIVGP 162
+ E L ++GL + +SGG+++RV IV
Sbjct: 115 -RRRVSE----------VLDLVGL--------KHKARALPSQLSGGEQQRVAIARAIVNQ 155
Query: 163 TKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDD----IIL 218
L DE + LD +++I++ ++I + T+LM A +L + ++
Sbjct: 156 PAVLLADEPTGNLDPDLSWEIMRLFEEI-NRLGTTVLM-----ATHDLELVNRMRHRVLA 209
Query: 219 LSEGQIVYQGPRER 232
L +G++V R
Sbjct: 210 LEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 56/235 (23%), Positives = 91/235 (38%), Gaps = 49/235 (20%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS----AYISQND 56
+T +LG GKTTLL L G L G I +G + + P + + AY+ Q
Sbjct: 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGR 84
Query: 57 VHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116
+TV+E L G L+ L RR + P+ +LF M
Sbjct: 85 EIFPRLTVEENLL-------TG-----LAALPRRSRK---IPDEIYELFPVLKEM----- 124
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
L G GD +SGGQ++++ +V K L +DE + G+
Sbjct: 125 -------LGRRG---------GD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQ 163
Query: 177 SSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231
S I + ++++ IL+ Q +L D ++ G++V G +
Sbjct: 164 PSIIKDIGRVIRRLRAEGGMAILLV-EQYLDFARELADRYYVMERGRVVASGAGD 217
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 42/190 (22%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
L+ ++ F L AL+G SG GK+T + L + IE +I+I+G K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIK--------- 67
Query: 783 GYCEQNDIHSPQVTVKE-------------SLIYSAFLRLA---KEVSKEDKIIFVEEVM 826
E +I+ ++ + E +S + +A K +DK E++
Sbjct: 68 --FEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDK-----ELI 120
Query: 827 DLVELESLKDAIVGLP-------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879
D ESLK A + S Q++R+ IA L P ++ +DEPTS LD
Sbjct: 121 DQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180
Query: 880 RAAAIVMRTV 889
+++ + T+
Sbjct: 181 ISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 28/168 (16%)
Query: 725 EVTS-AFRPGVLAALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFARIS 782
EV G + ++G +G GKTT + +LAG K E D+++S P+
Sbjct: 358 EVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISP----- 412
Query: 783 GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842
TV++ L + S F E++ + LE L +
Sbjct: 413 ---------DYDGTVEDLL-------RSAIRSAFGSSYFKTEIVKPLNLEDLLER----- 451
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
V LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 452 PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 70/243 (28%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDV--- 57
M LLGP GKTT+L +AG G+I +G E V T I Q D+
Sbjct: 34 MVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDG----EDV---THRSIQQRDICMV 83
Query: 58 --------HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKAT 109
H M++ E + + + LGV E +R K+A
Sbjct: 84 FQSYALFPH---MSLGENVGYGLKMLGVPK-----EERKQRVKEA--------------- 120
Query: 110 AMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMD 169
L+++ L +D V D+ ISGGQ++RV ++ K L D
Sbjct: 121 --------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALILKPKVLLFD 161
Query: 170 EISTGLDSS---TTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVY 226
E + LD++ + + ++ LQQ ++T + + E F + D +I++++G+I+
Sbjct: 162 EPLSNLDANLRRSMREKIRELQQQFNITS----LYVTHDQSEAFAVSDTVIVMNKGKIMQ 217
Query: 227 QGP 229
G
Sbjct: 218 IGS 220
|
Length = 351 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.003
Identities = 16/155 (10%), Positives = 44/155 (28%), Gaps = 7/155 (4%)
Query: 1078 MYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYY 1137
+ ++ + + A+ R + + S + + +PY++ +
Sbjct: 90 IVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIA 149
Query: 1138 TLIVYAMVSF---EWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYA 1194
L++ + + + + +++ Q A+
Sbjct: 150 GLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209
Query: 1195 LFNLFSGFFIPR----PWWIWYYWICPVAWTVYGL 1225
SG F P W +I P+ + + L
Sbjct: 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 52/202 (25%)
Query: 706 MPPEMKEQGVA--EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK---TGG 760
M P++K +GV K ++L + F + A++G SG GK+TL+ L +G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 761 YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV-----KESLIYSAFLRLAKEVSK 815
+EG + + + +I+SP + V + +++ K +
Sbjct: 61 RLEGAVLL-----------------DNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF- 102
Query: 816 EDKIIF--------VEEVMDLVELESLKDAIV-----------GLPGVTGLSIEQRKRLT 856
D + F + +D V +SL+ A + GL LS Q++RL
Sbjct: 103 -DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLC 157
Query: 857 IAVELVANPSIIFMDEPTSGLD 878
IA L P +I MDEP S LD
Sbjct: 158 IARVLAIEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 28/120 (23%)
Query: 831 LESLKDAIVGL-------PGVTGLSIEQRKRLTIAVELVANPS----IIFMDEPTSGL-- 877
L++L D VGL P T LS + +R+ +A EL + S + +DEPT+GL
Sbjct: 150 LQTLCD--VGLGYIKLGQPATT-LSGGEAQRIKLAKEL-SKRSTGKTLYILDEPTTGLHF 205
Query: 878 -DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL-----KRGGQVIYSGP 931
D + V++ + VD G TVV H +D+ + D ++ L GGQV+ SG
Sbjct: 206 HDVKKLLEVLQRL---VDKGNTVVVIEHN--LDVIKCADWIIDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.003
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 18/146 (12%)
Query: 740 GVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFARIS-GYCEQ--NDIHSP 793
G SGAGK+TL+ + R T G + ++ +K+ AR G Q N + S
Sbjct: 38 GASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97
Query: 794 QVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852
TV +++ A L LA K + V E+++LV L D P LS Q+
Sbjct: 98 --TVFDNV---ALPLELAG-TPKAEIKARVTELLELVGLSDKADR---YP--AQLSGGQK 146
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLD 878
+R+ IA L +NP ++ DE TS LD
Sbjct: 147 QRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 53/186 (28%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISG------- 770
R L +V + G A++G +G+GK+TL+ L G + T G + G+ I+
Sbjct: 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKL 80
Query: 771 ------------FPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSK 815
FP+ Q ET + DI F + VS+
Sbjct: 81 KPLRKKVGIVFQFPEHQLFEETVEK--------DI--------------CFGPMNFGVSE 118
Query: 816 EDKIIFVEEVMDLVEL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874
ED E+++LV L E L LS Q +R+ IA L P ++ +DEPT
Sbjct: 119 EDAKQKAREMIELVGLPEELLAR-----SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
Query: 875 SGLDAR 880
+GLD +
Sbjct: 174 AGLDPK 179
|
Length = 290 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG---YRLNEFVPQ--KTSAYISQN 55
+ LLGP SGK+TLL +AG L G I +G L + +P + + Q+
Sbjct: 28 IVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQD 84
Query: 56 DVHVGEMTVKE 66
+TV E
Sbjct: 85 FALFPHLTVLE 95
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 134 DTIVGDEMNRG--ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV 191
DT VG+ RG +SGG+K+RV I+ L +DE ++ LD+ T I L+++
Sbjct: 390 DTGVGE---RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS 446
Query: 192 -HVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234
T I L T D+II+L G+IV +G E +L
Sbjct: 447 AGRTTLVIAHRL-----STIIDADEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 53/237 (22%)
Query: 4 LLGPPSSGKTTLLLALAGKL---NRDLKVRGE-ITYNGYRLNEFVPQKTSAYISQN-DVH 58
++GP +GK+TL G L + + +RGE IT + N +K + QN D
Sbjct: 35 VIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT----KENIREVRKFVGLVFQNPDDQ 90
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
+ TV++ + F LG+ T V S+L
Sbjct: 91 IFSPTVEQDIAFGPINLGLDE----------------------------ETVAHRVSSAL 122
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
+LGL+ +D + +SGG+KKRV +I + L +DE + GLD
Sbjct: 123 ------HMLGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
Query: 179 TTYQIVKCLQQIVHVTDATILMSL--LQPAPETFDLFDDIILLSEGQIVYQGPRERV 233
+++ L + T++ S L PE + D I ++ +G+IV G E +
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDLVPE---MADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 56/255 (21%), Positives = 100/255 (39%), Gaps = 61/255 (23%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
++G SGKTT + L L L G I + F +K + + + ++
Sbjct: 38 IIGQTGSGKTTFIEHLNALL---LPDTGTIEWI------FKDEKNKKKTKEKEKVLEKLV 88
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGI-FPEAEIDLFMKATAME---------G 113
+++T + + + E+ RR G+ F AE LF + T + G
Sbjct: 89 IQKT---------RFKKIKKIKEIRRR---VGVVFQFAEYQLF-EQTIEKDIIFGPVSMG 135
Query: 114 V---ESSLITDYTLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGEMIVGPTKTLF 167
V E+ ++++GLD + R +SGGQK+RV ++ L
Sbjct: 136 VSKEEAKKRAAKYIELVGLDE-------SYLQRSPFELSGGQKRRVALAGILAMEPDFLV 188
Query: 168 MDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDI-------ILLS 220
DE + GLD +I++ + + TI++ T DL D++ I
Sbjct: 189 FDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILV-------THDL-DNVLEWTKRTIFFK 239
Query: 221 EGQIVYQGPRERVLE 235
+G+I+ G +L
Sbjct: 240 DGKIIKDGDTYDILS 254
|
Length = 305 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.004
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 134 DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHV 193
DT VG + +SGGQK+R+ ++ K L +DE ++ LDS++ I K + I
Sbjct: 1349 DTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407
Query: 194 TDATIL 199
D TI+
Sbjct: 1408 ADKTII 1413
|
Length = 1466 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.004
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 829 VELESLKDAIVGLP---------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879
+E +KD I P G S+ QR+ L++A L+ I+ +DE T+ +D
Sbjct: 1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDV 1404
Query: 880 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
R +++ RT+R + T++ H+ + I D++L+L G + Y P
Sbjct: 1405 RTDSLIQRTIREEFKSC-TMLVIAHRLNTII--DCDKILVLSSGQVLEYDSP 1453
|
Length = 1495 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.004
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 44/167 (26%)
Query: 738 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIRISGFPKKQETFARISGYCE---------- 786
L+G SG GK+TL+ ++AG + I G+I I G R+ E
Sbjct: 35 LVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RVVNELEPADRDIAMVF 82
Query: 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD----AIVGLP 842
QN P ++V+E++ Y L++ + K + V E ++ELE L D
Sbjct: 83 QNYALYPHMSVRENMAYG--LKIRG-MPKAEIEERVAEAARILELEPLLDRKPRE----- 134
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMR 887
LS QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 135 ----LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1293 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.98 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.98 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.98 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.98 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.98 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.98 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.98 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.98 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.98 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.98 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.98 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.98 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.98 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.98 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.98 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.98 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.98 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.98 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.98 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.98 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.98 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.98 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.98 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.98 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.98 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.98 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.97 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.97 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.97 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.97 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.97 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.97 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.97 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.97 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.97 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.97 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.97 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.97 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.97 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.97 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.97 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.97 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.97 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.97 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.97 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.97 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-194 Score=1772.90 Aligned_cols=1211 Identities=56% Similarity=0.928 Sum_probs=1107.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
|+.++||+||||||||++|+|..+......|+|++||.+.++...++.++|++|+|.|+|.+||||+|.|+++|+++..|
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 58899999999999999999999876566889999999998887788999999999999999999999999999999887
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
++ +..+.+++ .+.+|.+++.+||.+|+||+||+++.||+||||||||++|++++
T Consensus 223 ~~---~~~R~e~~-----------------------~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 223 YD---EVSRREKL-----------------------AAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cc---cccHHHHH-----------------------HHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 75 22222221 12578899999999999999999999999999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHHHHhC
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~f~~~ 240 (1293)
.+++++++||+|+|||+.++.+++++|+++++..+.|.+++++||+++++++||+|++|++|+++|+||.+++++||+++
T Consensus 277 ~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~ 356 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDM 356 (1391)
T ss_pred cCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHhcCCcchhhhhhcCCCCCCCCCHHHHHHHHHhcccchhhHhhccCCCCCCcCcccccccccCCC
Q 000773 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLSVPFDKSQGHRAAIVFKKYTV 320 (1293)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1293)
||.||++++++||++++++..++.++|.....++...+.+++.+.|.+++.+..+.++++.+.++.+.++.+...+.|..
T Consensus 357 Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v 436 (1391)
T KOG0065|consen 357 GFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSV 436 (1391)
T ss_pred CccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceec
Confidence 99999999999999999998888888888888888888899999999999999999999999998888888888999999
Q ss_pred CHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 000773 321 PKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIASTVFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMT 400 (1293)
Q Consensus 321 ~~~~~~~~l~~r~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 400 (1293)
++|.|++.|+.|.|..++||..++....++.+++++++|++|++++. .+..+...+.|++||++++.+++++++++..
T Consensus 437 ~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 437 PYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred cHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999883 4555677889999999999999999999999
Q ss_pred hhhhhhhHhhhcCCCccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000773 401 IQRFPVFYKQRDLMFHPVWTFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480 (1293)
Q Consensus 401 ~~~~~~~~~~~~~~~y~~~~y~la~~l~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~l~~~~~~~~~~~~~~ 480 (1293)
++++|+++|||+..+|++|++.++.++.++|+.++.+++|.+|.||++|+.++|.+||.+++++++.+.+++++++++++
T Consensus 515 ~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~ 594 (1391)
T KOG0065|consen 515 FQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIAS 594 (1391)
T ss_pred HhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHhcccccCCCCCCcchhhhhhhCHHHHHHHHHHHhhcCCCccccccC----------CC-
Q 000773 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAPRWMNRLA----------SD- 549 (1293)
Q Consensus 481 ~~~s~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~al~~ne~~~~~~~~~~~----------~~- 549 (1293)
+++++..|+..+++..+++.+++||+||...||+||+|++|++|+.|++++++.|||.+.+|.|... ..
T Consensus 595 l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~ 674 (1391)
T KOG0065|consen 595 LSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKV 674 (1391)
T ss_pred hcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998711 11
Q ss_pred ---cccccchhhhhccCcc-----cCCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccchHhHHHHHHHhhhhc
Q 000773 550 ---NVTKLGAAVLNNFDIP-----AHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPGKPQAVLSEEAAAEMVAEQEES 621 (1293)
Q Consensus 550 ---~~~~~g~~~l~~~~~~-----~~~~~~~~~~~~l~~~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (1293)
.....|.+++...++. ....|+|+++++++++.++|++++.+++.|.++....+.....+...+...
T Consensus 675 c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~----- 749 (1391)
T KOG0065|consen 675 CAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKK----- 749 (1391)
T ss_pred chhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhc-----
Confidence 1256788888877776 777899999999999999999999999999998776665544222111000
Q ss_pred cccccccCCCCcCCCCCCCCCCCCcCchhHHHHHhhcCCCCCCCCCCCCCchhhhhcCCCCCCCccccccceeEEEeeeE
Q 000773 622 KEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSRSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVY 701 (1293)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1293)
...+.... ..+ ......+.+.+++..|..+..++++||.
T Consensus 750 ---------------~~~~~~~~------------------~~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~V~ 788 (1391)
T KOG0065|consen 750 ---------------VKSAGSSS------------------EIE--------KLDDSSHQEKNKMVLPFTPLSLTFKDVF 788 (1391)
T ss_pred ---------------chhccccc------------------ccc--------ccccccccccccccCCCccccccccceE
Confidence 00000000 000 0000011135567778888899999999
Q ss_pred EEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccce
Q 000773 702 YYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 781 (1293)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~ 781 (1293)
|.++++-.++..+ +++++|+|||+.++||.++||||+||||||||||+|+||.+.|.++|+|.+||.|.++..++|.
T Consensus 789 ~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred EEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccc
Confidence 9999887766555 6789999999999999999999999999999999999999999999999999999988889999
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000773 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVEL 861 (1293)
Q Consensus 782 ~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL 861 (1293)
+|||.|+|.|.|.+||||.|.|+|.+|++...+.+++.+.|+++++.++|.+++|.+||.++ +|||.+||||++||.+|
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVEL 944 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVEL 944 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred hhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCChhHHH
Q 000773 862 VANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVI 940 (1293)
Q Consensus 862 ~~~p-~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~~~~~~ 940 (1293)
+.|| .||||||||||||+.++..|++.+|+++++|+||+||+|||+.++++.||++++|++||+++|.||.+++++.++
T Consensus 945 vA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li 1024 (1391)
T KOG0065|consen 945 VANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLI 1024 (1391)
T ss_pred ecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHH
Confidence 9999 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCcccchhhccchHHHhhhchhHHHHHhhcHHHHHHHHHHhhhcCCCCC-CCCccccccCCchhH
Q 000773 941 EYYEAIPGVPKIKEKYNPATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRG-AKDLYFATQYSQSTW 1019 (1293)
Q Consensus 941 ~~~~~~~~~~~~~~~~n~a~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 1019 (1293)
+||+++++.+ |+...|||||++|+++...+.....||++.|+.|++++++++++++++.+++. ..+..++++|++|+|
T Consensus 1025 ~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~ 1103 (1391)
T KOG0065|consen 1025 EYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLW 1103 (1391)
T ss_pred HHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHH
Confidence 9999998874 67667999999999998777777889999999999999999999999988777 677778888999999
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHh
Q 000773 1020 GQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQPVVAV 1099 (1293)
Q Consensus 1020 ~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~ 1099 (1293)
.|++.++||+++.+||+|.++.+|++..++.|+++|+.||++|. +.+++++.+|++|.++++.+..++....+.+..
T Consensus 1104 ~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~ 1180 (1391)
T KOG0065|consen 1104 YQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVAT 1180 (1391)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhh
Confidence 99999999999999999999999999999999999999999985 689999999999999999988777777788888
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhceeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000773 1100 ERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSIT 1179 (1293)
Q Consensus 1100 er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1293)
||.+++||+++|+||+.+|++|++++|+|+.++++++|.+|+|+++||.+++.+|+||++.+++..++.+.+|+|+.+++
T Consensus 1181 e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~t 1260 (1391)
T KOG0065|consen 1181 ERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLT 1260 (1391)
T ss_pred hhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCcc----hhhhHhhhCHHHHHHHHHHHHhhCCCcccccccC-----CCCCCCHHH
Q 000773 1180 PNHQVAAIFAAAFYALFNLFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPG-----MAQKPTIKA 1250 (1293)
Q Consensus 1180 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~----~~~w~~~isp~~y~~~~l~~ne~~~~~~~~~~~~-----~~~~~~~~~ 1250 (1293)
||.++|+.+.++++.++.+|||+++|++ ||+|+||+||+.|.++|++..+++|.+..|...+ +++.++|++
T Consensus 1261 Pn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge 1340 (1391)
T KOG0065|consen 1261 PNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGE 1340 (1391)
T ss_pred CChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHH
Confidence 9999999999999999999999999987 9999999999999999999999999887774322 234579999
Q ss_pred HHHhhcC----CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000773 1251 YIEDHFG----YEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293 (1293)
Q Consensus 1251 ~~~~~~~----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1293 (1293)
|+.+.+| +.++.......+.++|.+++.+++.++.++.++++|
T Consensus 1341 ~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1341 FMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 9999999 777766666777888999999999999999999886
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-191 Score=1877.81 Aligned_cols=1274 Identities=86% Similarity=1.380 Sum_probs=1091.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+||||||||||||+|+|+++|+..++|+|.+||+++++...++.++||+|+|.|++.+||+||+.|++++++...+
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 272 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTR 272 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999886667999999999887655567899999999999999999999999988765444
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
++...+..+.+++.+..++.+++.+++....++.+.+..++.+++.+||++|+||.||++..++|||||||||+||++|+
T Consensus 273 ~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~ 352 (1470)
T PLN03140 273 YDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIV 352 (1470)
T ss_pred ccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhc
Confidence 43333333334333334445555566665555565667789999999999999999999999999999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHHHHhC
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~f~~~ 240 (1293)
++|++++|||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+|+.+++.+||+++
T Consensus 353 ~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~l 432 (1470)
T PLN03140 353 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESC 432 (1470)
T ss_pred CCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHc
Confidence 99999999999999999999999999999988778999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHhcCCcchhhhhhcCCCCCCCCCHHHHHHHHHhcccchhhHhhccCCCCCCcCcccccccccCCC
Q 000773 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLSVPFDKSQGHRAAIVFKKYTV 320 (1293)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1293)
||.||++.+++||++++++..+++++|.....|++..+.+++.+.|+++..++...+++..+.++...++.....+.|..
T Consensus 433 Gf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 512 (1470)
T PLN03140 433 GFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV 512 (1470)
T ss_pred CCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcC
Confidence 99999999999999999987666555554445555678899999999988776666655544433333333333456889
Q ss_pred CHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCcchhhhHHHHHHHHHHHHHHHHHHHHh
Q 000773 321 PKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIASTVFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMT 400 (1293)
Q Consensus 321 ~~~~~~~~l~~r~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 400 (1293)
+++.|++.|++|.|+.++||+..+..+.++.+++|+++|++|++++.+.....+...+.|++||.+++.+++++.++..+
T Consensus 513 s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~ 592 (1470)
T PLN03140 513 PKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALM 592 (1470)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876544444556678999999999999999999999
Q ss_pred hhhhhhhHhhhcCCCccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000773 401 IQRFPVFYKQRDLMFHPVWTFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAG 480 (1293)
Q Consensus 401 ~~~~~~~~~~~~~~~y~~~~y~la~~l~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~l~~~~~~~~~~~~~~ 480 (1293)
+.++|+++|||+..+|++++|++++++.++|+.++.+++|++|+|||+|+.+++.+||.|++++++...++.++++++++
T Consensus 593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a 672 (1470)
T PLN03140 593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS 672 (1470)
T ss_pred HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHHHHHhcccccCCCCCCcchhhhhhhCHHHHHHHHHHHhhcCCCccccccCCCcccccchhhhh
Q 000773 481 VCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAPRWMNRLASDNVTKLGAAVLN 560 (1293)
Q Consensus 481 ~~~s~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~al~~ne~~~~~~~~~~~~~~~~~~g~~~l~ 560 (1293)
+++++..|+..+++..+++++++||++|.+.||+||+|++|+||+.|++++++.|||.+.+|.+....+.....|..+|.
T Consensus 673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~ 752 (1470)
T PLN03140 673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLN 752 (1470)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988877543222233568999999
Q ss_pred ccCcccCCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccchHhHHHHHHHhhhhccccccccCCCCcCCCCCCC
Q 000773 561 NFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPGKPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRS 640 (1293)
Q Consensus 561 ~~~~~~~~~~~~~~~~~l~~~~v~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1293)
.+++...+.|+|++++++++++++|++++++++.+.+.....+.........+...+ .... +. .......
T Consensus 753 ~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~--~~~~~~~ 822 (1470)
T PLN03140 753 IFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGE-EDSI-------PR--SLSSADG 822 (1470)
T ss_pred hcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcc-cccc-------cc--ccccccc
Confidence 999998888999999999999999999999999998755444333221110000000 0000 00 0000000
Q ss_pred CCCCCcCchhHHHHHhhcCCCCCCCCCCCCCchhhhhcCCCCCCCccccccceeEEEeeeEEEEECCccccccccccccc
Q 000773 641 LSSSDANNSREMAIRRMCSRSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKL 720 (1293)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1293)
... +. . ...................+......+++++.+|..|..++|+|++|.++.+...++.+...+++
T Consensus 823 -----~~~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~ 893 (1470)
T PLN03140 823 -----NNT-RE--V-AIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRL 893 (1470)
T ss_pred -----ccc-cc--c-cccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCc
Confidence 000 00 0 00000000000000000000001122345667788899999999999998876655555556677
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKES 800 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 800 (1293)
++|+|||++++|||++||+||||||||||||+|+|+.++|+.+|+|.+||.+.+...+++.+|||+|+|.+++.+||+||
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~ 973 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRES 973 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHH
Confidence 89999999999999999999999999999999999987667889999999887654566779999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000773 801 LIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880 (1293)
Q Consensus 801 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~ 880 (1293)
|.|++.++.+...+.+++.++++++++.+||.+++|+.+|.+.+++|||||||||+||++|+.+|++|||||||+|||+.
T Consensus 974 L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~ 1053 (1470)
T PLN03140 974 LIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1053 (1470)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Confidence 99998888766566666777899999999999999999998877899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCChhHHHHHHHhCCCCCCCCCCCCccc
Q 000773 881 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPAT 960 (1293)
Q Consensus 881 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~ 960 (1293)
++..+++.|++++++|+|||+++|||+.++++.||++++|.+||+++|+|+.+++.+++.+||++++|.++||+.+||||
T Consensus 1054 ~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd 1133 (1470)
T PLN03140 1054 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPAT 1133 (1470)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchh
Confidence 99999999999998899999999999977889999999998779999999998777789999999877777999999999
Q ss_pred chhhccchHHHhhhchhHHHHHhhcHHHHHHHHHHhhhcCCCCCCCCccccccCCchhHHHHHHHHHHHHHHHhcChhhH
Q 000773 961 WMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYN 1040 (1293)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~ 1040 (1293)
|++|+.+...+.....|+++.|+.|+.+++..+.++++..+++...+..+..+|+.++|+|+++|++|+++++||||.++
T Consensus 1134 ~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~ 1213 (1470)
T PLN03140 1134 WMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYN 1213 (1470)
T ss_pred hhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHH
Confidence 99999876554445568999999999998887777766655544444445567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhHHHHHHhcCCCCChHHHHH
Q 000773 1041 LVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAI 1120 (1293)
Q Consensus 1041 ~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~ 1120 (1293)
.+|+++++++|+++|++||+++++..+.+++++++|++|++++++++.++++++|.+..||++|+|||++|+|++++|++
T Consensus 1214 ~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~l 1293 (1470)
T PLN03140 1214 LVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAI 1293 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 99999999999999999999998777788999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhceeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhh
Q 000773 1121 AQVIVEIPYVLFQTTYYTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFS 1200 (1293)
Q Consensus 1121 a~~~~~~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~ 1200 (1293)
|++++|+|+.++.+++|.+|+|||+||++++++||+|+++++++.++++++|+++++++|+.++|..+++++++++++|+
T Consensus 1294 a~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~ 1373 (1470)
T PLN03140 1294 AQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFS 1373 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc----hhhhHhhhCHHHHHHHHHHHHhhCCCcccccccCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHH
Q 000773 1201 GFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISVPGMAQKPTIKAYIEDHFGYEPDFMGPVAAVLVAFTVF 1276 (1293)
Q Consensus 1201 G~~i~~~----~~~w~~~isp~~y~~~~l~~ne~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 1276 (1293)
||++|++ ||+|++|+||++|+++|+++|||++.+.+|.+|+..+..++.+|+++.|||+++++|++++|+++|.++
T Consensus 1374 Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~ 1453 (1470)
T PLN03140 1374 GFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVF 1453 (1470)
T ss_pred eeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHH
Confidence 9999986 999999999999999999999999988777777633335789999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccC
Q 000773 1277 FAFMFAFCIKTLNFQTR 1293 (1293)
Q Consensus 1277 f~~~~~~~l~~~~~~~r 1293 (1293)
|+++++++++++|||||
T Consensus 1454 f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1454 FAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHHHHHHHHHHhhcccC
Confidence 99999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-168 Score=1667.53 Aligned_cols=1206 Identities=34% Similarity=0.548 Sum_probs=980.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRD-LKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~-~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||||+|+|+.++. ...+|+|.+||.++++. ..++.++||+|+|.+++.+||+||+.|+++++.+
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 168 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999997421 12499999999887532 2345689999999999999999999999876542
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
..+... ..+ .+ ..++.++.+++.+||++++||.||++..++|||||||||+||+
T Consensus 169 ~~~~~~---~~~----------~~-------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~ 222 (1394)
T TIGR00956 169 QNRPDG---VSR----------EE-------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAE 222 (1394)
T ss_pred CCCCCC---CCH----------HH-------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHH
Confidence 111000 000 00 0012346689999999999999999999999999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFF 237 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~f 237 (1293)
+|+.+|++++|||||+|||+.++.++++.|++++++.|+|+|+++|||+++++++||++++|++|+++++|+++++.+||
T Consensus 223 aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF 302 (1394)
T TIGR00956 223 ASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYF 302 (1394)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999987678999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCChhhHHHHhcCCcchhhhhhcCCCCCCCCCHHHHHHHHHhcccchhhHhhccCCCCCC-----------
Q 000773 238 ESCGFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLSVPFDKS----------- 306 (1293)
Q Consensus 238 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~----------- 306 (1293)
+++||.||++.+++||+.+++++.++.. +... ......+.+++.+.|+++..++....+.+...++.
T Consensus 303 ~~lG~~~p~~~n~aDfl~~~~~~~~~~~-~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1394)
T TIGR00956 303 EKMGFKCPDRQTTADFLTSLTSPAERQI-KPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRE 380 (1394)
T ss_pred HHcCCCCCCCCChHHHHHhccChhhhhc-cccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHH
Confidence 9999999999999999999987653221 1110 11123467889999998876554444332211100
Q ss_pred ----cCcccccccccCCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCcchhhhHHH
Q 000773 307 ----QGHRAAIVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIASTVFLRTRMHTRNENDGALFIGAL 382 (1293)
Q Consensus 307 ----~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~l 382 (1293)
...+.....+.|..++++|++.+++|.++..+||+..+..++++.+++|+++|++|++++.+.. +...+.|++
T Consensus 381 ~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~~~~r~g~l 457 (1394)
T TIGR00956 381 SHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---DFYSRGGAL 457 (1394)
T ss_pred HHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---hHHHHHHHH
Confidence 0000111234577899999999999999999999999999999999999999999999875443 346678999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHhhhcCCCccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCcCccHHHHHHHHH
Q 000773 383 LFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWTFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFL 462 (1293)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~la~~l~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l 462 (1293)
|+++++..+.++.++...+.+|++++|||..++|++++|++|++++++|+.++.+++|++|+|||+|+.+++.+|+.|++
T Consensus 458 f~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l 537 (1394)
T TIGR00956 458 FFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLL 537 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHH
Confidence 99999989988888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcchhhhhhhCHHHHHHHHHHHhhcCCCcc
Q 000773 463 LVFLIQQMAAAMFRLIAGVCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAPRW 542 (1293)
Q Consensus 463 ~~~l~~~~~~~~~~~~~~~~~s~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~al~~ne~~~~~~ 542 (1293)
++++...++.+++++++++++++..|+.++++..+++++++||++|.++||+||+|++|+||+.|+|++++.|||.+..+
T Consensus 538 ~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~ 617 (1394)
T TIGR00956 538 ILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRF 617 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccc--CC----------C-c----------ccccchhhhhc-cCcccCCcchhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 000773 543 MNRL--AS----------D-N----------VTKLGAAVLNN-FDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNP 598 (1293)
Q Consensus 543 ~~~~--~~----------~-~----------~~~~g~~~l~~-~~~~~~~~~~~~~~~~l~~~~v~f~~~~~~~l~~~~~ 598 (1293)
.|.. +. + . ....|+++|.. +++ ...|.|++++++++++++|.+++++++.+.+.
T Consensus 618 ~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~--~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 618 ECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQY--YNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred cccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCc--ccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7741 11 0 0 12467778874 454 45689999999999999999999999999875
Q ss_pred CCCCCccchHhHHHHHHHhhhhccccccccCCCCcCCCCCCCCCCCCcCchhHHHHHhhcCC-C--CCCCCCCCCCchhh
Q 000773 599 PGKPQAVLSEEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSR-S--NPNELSRNDDSNLE 675 (1293)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~ 675 (1293)
....+.............. ... .+ .+.. . ...++.... . .+.+.. .... +
T Consensus 696 ~~~~~~~~~~~~~~~~~~~-~~~-~~---------~~~~------~-------~~~e~~~~~~~~~~~~~~~-~~~~--~ 748 (1394)
T TIGR00956 696 AKQKGEILVFRRGSLKRAK-KAG-ET---------SASN------K-------NDIEAGEVLGSTDLTDESD-DVND--E 748 (1394)
T ss_pred cCCCCceEeeccccccchh-hcc-cc---------cccc------c-------ccccccccCCCCccccccc-cccc--c
Confidence 5443332221110000000 000 00 0000 0 000000000 0 000000 0000 0
Q ss_pred hhcCCCCCCCccccccceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhC
Q 000773 676 AAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g 755 (1293)
.. .+. ......++|+|++|.++.+ .+++.+|+|||++++|||++||+||||||||||||+|+|
T Consensus 749 ~~---~~~-----~~~~~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag 811 (1394)
T TIGR00956 749 KD---MEK-----ESGEDIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAE 811 (1394)
T ss_pred cc---ccc-----cCCCceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 00 000 0112357899999876421 134679999999999999999999999999999999999
Q ss_pred CCCCC-ceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000773 756 RKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834 (1293)
Q Consensus 756 ~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 834 (1293)
+.+++ +.+|+|.+||++... .+++.+|||+|+|.+++.+||+||+.|++.++.+...+++++.++++++++.+||.++
T Consensus 812 ~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~ 890 (1394)
T TIGR00956 812 RVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY 890 (1394)
T ss_pred CCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 87644 356999999998753 4567899999999999999999999999988876556666777789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH
Q 000773 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 913 (1293)
Q Consensus 835 ~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~-illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 913 (1293)
+|+.++.++ .+|||||||||+||+||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.
T Consensus 891 ~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~ 969 (1394)
T TIGR00956 891 ADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEE 969 (1394)
T ss_pred CCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHh
Confidence 999998654 3899999999999999999997 99999999999999999999999999888999999999999667788
Q ss_pred HhHhheeecCcEEEEeCCCCCChhHHHHHHHhCCCCCCCCCCCCcccchhhccchHHHhhhchhHHHHHhhcHHHHHHHH
Q 000773 914 FDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVSSAAAEVRLGMDFADAYKSSSLCQRNKA 993 (1293)
Q Consensus 914 ~d~v~~l~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 993 (1293)
||++++|++||+++|.|+.++..+++.+||+.. |.++||+++|||||++|+.+...+.....++.+.|+.|+.+++..+
T Consensus 970 ~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 970 FDRLLLLQKGGQTVYFGDLGENSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred cCEEEEEcCCCEEEEECCcccccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHH
Confidence 999999998779999999987777899999987 6557999999999999998754333334578999999988776655
Q ss_pred HHhhhcCCCCCC---CCccccccCCchhHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhh
Q 000773 994 LVNELSTPPRGA---KDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTD 1070 (1293)
Q Consensus 994 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~ 1070 (1293)
.++....+.... .+.....+++.|+|+|+++|++|+++++||||.++++|+++++++|+++|++||++++ ++++
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHH
Confidence 544433221111 1111124578999999999999999999999999999999999999999999999987 4678
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhceeeccccccc
Q 000773 1071 LTMIIGAMYAAILFVGISNCSTVQPVVAVERTVF-YRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSFEW 1149 (1293)
Q Consensus 1071 ~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~g~~~ 1149 (1293)
+++++|++|+.+++.++. +..++|.|+.||.+| +||+.+|+|++.+|++|++++|+|+.++.+++|++|+|||+||++
T Consensus 1126 i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~ 1204 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYW 1204 (1394)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccC
Confidence 999999999988877765 345567788888886 899999999999999999999999999999999999999999998
Q ss_pred chhH-------HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCcc----hhhhHhhhCHH
Q 000773 1150 TAAK-------FWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFSGFFIPRP----WWIWYYWICPV 1218 (1293)
Q Consensus 1150 ~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~----~~~w~~~isp~ 1218 (1293)
++.. |++|+++++++.++++++|+++++++|+..+|+.+++++++++++||||+++++ ||+|++|+||+
T Consensus 1205 ~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~ 1284 (1394)
T TIGR00956 1205 NASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPF 1284 (1394)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHH
Confidence 8866 999999999999999999999999999999999999999999999999999976 99999999999
Q ss_pred HHHHHHHHHHhhCCCcccccc--------c-CCC------------------------C----CCCHHHHHHhhcCCCCC
Q 000773 1219 AWTVYGLIVSQYGDVEDSISV--------P-GMA------------------------Q----KPTIKAYIEDHFGYEPD 1261 (1293)
Q Consensus 1219 ~y~~~~l~~ne~~~~~~~~~~--------~-~~~------------------------~----~~~~~~~~~~~~~~~~~ 1261 (1293)
+|+++|++.|||++.+.+|.. | +.+ | ..++.+++. .+|++.+
T Consensus 1285 ~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~~~~~ 1363 (1394)
T TIGR00956 1285 TYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PISSKYS 1363 (1394)
T ss_pred HHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcCCccc
Confidence 999999999999988765421 1 111 1 114455554 7899999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000773 1262 FMGPVAAVLVAFTVFFAFMFAFCIKTLNFQT 1292 (1293)
Q Consensus 1262 ~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1292 (1293)
+.|+|++|+++|++++ ++++++|.+..+.+
T Consensus 1364 ~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1364 GRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred ccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 9999999999999888 77788888765544
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-93 Score=881.08 Aligned_cols=576 Identities=32% Similarity=0.567 Sum_probs=499.8
Q ss_pred cceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC-ceeEEEEEc
Q 000773 691 TPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRIS 769 (1293)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~ 769 (1293)
.++.+.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3567899999988765321 3578999999999999999999999999999999999998764 689999999
Q ss_pred CccCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000773 770 GFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 770 g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 849 (1293)
|++...+.+++.+|||.|+|.++|++||+|+|.|+|.+|++...+++++.++|+++++.+||.+++|+++|+++.|++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98887778899999999999999999999999999999999988999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.++++.||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 899999
Q ss_pred CCCCCChhHHHHHHHhCCCCCCCCCCCCcccchhhccchH--HHhhhchhHHHHHhh------cHHHHHHHH-HHhhhcC
Q 000773 930 GPLGRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVSSAA--AEVRLGMDFADAYKS------SSLCQRNKA-LVNELST 1000 (1293)
Q Consensus 930 g~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~~~--~~~~~~~~~~~~~~~------s~~~~~~~~-~~~~~~~ 1000 (1293)
|++ +++.+||++. |. +||++.||+||++|+.+.+ .+.. .+..+.++. .....+... .......
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTREL--EEAVRIAKLINKFSQTDNLKKTLEALEKSLST 324 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchhH--HhHHHHHHHhhhccccchhhhhHHHHhhhccc
Confidence 997 5789999999 55 4999999999999988742 1100 011111111 111111100 0000100
Q ss_pred CCCCCCCccccccCCchhHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHH
Q 000773 1001 PPRGAKDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYA 1080 (1293)
Q Consensus 1001 ~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~ 1080 (1293)
.. ..+....++||.|+..|++|.+++.+|||.+...|+++.+++|+++|++||+++++ ..+++++.|++|+
T Consensus 325 ~~------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~ 395 (613)
T KOG0061|consen 325 SK------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFF 395 (613)
T ss_pred cc------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHH
Confidence 00 01111168999999999999999999999999999999999999999999999764 4556689999999
Q ss_pred HHHHHHHHhhhhhhhhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhceeecccccccchhHHHHHHHH
Q 000773 1081 AILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSFEWTAAKFWWFFFV 1160 (1293)
Q Consensus 1081 ~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~ 1160 (1293)
.+.++.+.++.+.++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|+++
T Consensus 396 ~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~ 475 (613)
T KOG0061|consen 396 ILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLI 475 (613)
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHH
Confidence 99999898988888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCcc----hhhhHhhhCHHHHHHHHHHHHhhCCCccc
Q 000773 1161 TFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDS 1236 (1293)
Q Consensus 1161 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~----~~~w~~~isp~~y~~~~l~~ne~~~~~~~ 1236 (1293)
+++..++++++|++++++.||...|..++++++++|++|+||+++.+ ||+|++|+|+++|++||+++|||++....
T Consensus 476 ~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~ 555 (613)
T KOG0061|consen 476 ILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSR 555 (613)
T ss_pred HHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999976 99999999999999999999999973333
Q ss_pred ccccC-CCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000773 1237 ISVPG-MAQKPTIKAYIEDHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293 (1293)
Q Consensus 1237 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1293 (1293)
|...+ ..+..+. +.++..++++..+.|.++.+++++.++|+++++++|++..+.+|
T Consensus 556 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 556 CFLSGNLCCESTG-EDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cccCcCCcccccH-HHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 31111 2232344 44555899999999999999999999999999999999777654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-93 Score=885.63 Aligned_cols=583 Identities=25% Similarity=0.449 Sum_probs=482.2
Q ss_pred cceeEEEeeeEEEEECCc----------------ccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHh
Q 000773 691 TPLAMSFDSVYYYVDMPP----------------EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~ 754 (1293)
.++++.|.+++|+++... ..+++.++++++.+|+|||+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 367899999999986442 2233455677788999999999999999999999999999999999
Q ss_pred CCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000773 755 GRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834 (1293)
Q Consensus 755 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 834 (1293)
|+.+++..+|+|.+||++.... .++.+|||+|++.+++.+||+||+.+.+.++.+...+++++.++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999886533 345689999999999999999999998877765555566666778999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHH
Q 000773 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 914 (1293)
Q Consensus 835 ~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 914 (1293)
+|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++.+.+
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999998889999999999987788999
Q ss_pred hHhheeecCcEEEEeCCCCCChhHHHHHHHhCCCCCCCCCCCCcccchhhccchHHHh------h---hchhHHHHHhhc
Q 000773 915 DELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVSSAAAEV------R---LGMDFADAYKSS 985 (1293)
Q Consensus 915 d~v~~l~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~~~~~~------~---~~~~~~~~~~~s 985 (1293)
|++++|.+ |++++.|+. +++.+||+++ |+ +||+++|||||++|+.+...+. . ......+.|+..
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 899999996 5789999999 55 5899999999999998643110 0 001223344321
Q ss_pred HHHHHHHHHHhh--hcC-CCC-----CCCCcc-ccccCCchhHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Q 000773 986 SLCQRNKALVNE--LST-PPR-----GAKDLY-FATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGT 1056 (1293)
Q Consensus 986 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~ 1056 (1293)
. .++.....+. ... ... ..+... ....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111110 000 000 000000 11224578999999999999998 89999999999999999999999
Q ss_pred HhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000773 1057 VFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTY 1136 (1293)
Q Consensus 1057 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~ 1136 (1293)
+||+++ ..+++++.|++||+++++++.+++++++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 457889999999999998888888888999999999999999999999999999999999999999999
Q ss_pred hhceeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCc-c-hhhhHhh
Q 000773 1137 YTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALFNLFSGFFIPR-P-WWIWYYW 1214 (1293)
Q Consensus 1137 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~-~-~~~w~~~ 1214 (1293)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++|+..+|+.+++++++++++||||+++. | ||+|++|
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~y 580 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKY 580 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999973 2 9999999
Q ss_pred hCHHHHHHHHHHHHhhCCCcc-----cccccCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 000773 1215 ICPVAWTVYGLIVSQYGDVED-----SISVPGMAQKPTIKAYIEDHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLN 1289 (1293)
Q Consensus 1215 isp~~y~~~~l~~ne~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1289 (1293)
+||++|++||++.|||++.+. +|..+.......+ .+ ....+++....|.++++|++|+++|+++++++|++++
T Consensus 581 lS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c-~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 581 ISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASC-KF-VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCC-cc-chhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999986542 3322111000011 11 1223444557899999999999999999999999887
Q ss_pred c
Q 000773 1290 F 1290 (1293)
Q Consensus 1290 ~ 1290 (1293)
|
T Consensus 659 ~ 659 (659)
T PLN03211 659 H 659 (659)
T ss_pred C
Confidence 6
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-91 Score=873.13 Aligned_cols=565 Identities=29% Similarity=0.502 Sum_probs=491.7
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC-ceeEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4577999999999999999999999999999999999986543 357999999998765567788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG-VTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
|+||+.|++.++.+...+++++.++++++++.+||.+++|+.+|+++ .++|||||||||+||+||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988877666777777889999999999999999999753 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCChhHHHHHHHhCCCCCCCCCC
Q 000773 876 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEK 955 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1293)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|. +|+++|.|+. +++.+||+++ |. .||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCC
Confidence 9999999999999999988899999999999878999999999998 5899999997 5789999998 54 59999
Q ss_pred CCcccchhhccchHHHh-----hhchhHHHHHhhcHHHHHHHHHHhhhcCCCC---CCCCccccccCCchhHHHHHHHHH
Q 000773 956 YNPATWMLEVSSAAAEV-----RLGMDFADAYKSSSLCQRNKALVNELSTPPR---GAKDLYFATQYSQSTWGQFKSCLW 1027 (1293)
Q Consensus 956 ~n~a~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 1027 (1293)
.|||||++++.+...+. ....++.+.|+.++.+++..........+.. ..........+..+++.|+.+|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 99999999987643221 1123455667766655544333222111110 111111223567899999999999
Q ss_pred HHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhHHHHHH
Q 000773 1028 KQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQPVVAVERTVFYRE 1107 (1293)
Q Consensus 1028 R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 1107 (1293)
|++++.||||.++.+|+++.+++|+++|++||+++. +.++++++.|++|++++++++.++....+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999976 45678889999999999999988878888999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHhhceeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 000773 1108 RAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAI 1187 (1293)
Q Consensus 1108 ~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1187 (1293)
+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCcc----hhhhHhhhCHHHHHHHHHHHHhhCCCcc-cccccCC--CCCCCHHHHHHhhcCCCC
Q 000773 1188 FAAAFYALFNLFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVED-SISVPGM--AQKPTIKAYIEDHFGYEP 1260 (1293)
Q Consensus 1188 ~~~~~~~~~~lf~G~~i~~~----~~~w~~~isp~~y~~~~l~~ne~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~ 1260 (1293)
+++++++++++|+||+++.+ ||+|++|+||++|+++|+++|||.+... +|...+. .|..+ ++++++.||++.
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~-g~~~l~~~g~~~ 584 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSS-GEVILETLSFRN 584 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcC-hHHHHHhcCCCc
Confidence 99999999999999999875 9999999999999999999999998764 4421111 12123 467777999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000773 1261 DFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQTR 1293 (1293)
Q Consensus 1261 ~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1293 (1293)
+++|+++++|++|.++|+++++++|++..+++|
T Consensus 585 ~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 585 ADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999877776
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-88 Score=907.46 Aligned_cols=590 Identities=25% Similarity=0.407 Sum_probs=501.4
Q ss_pred cceeEEEeeeEEEEECCcc--c-----------c----cc--cccccccccccceeeeeecCcEEEEECCCCccHHHHHH
Q 000773 691 TPLAMSFDSVYYYVDMPPE--M-----------K----EQ--GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMD 751 (1293)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~--~-----------~----~~--~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~ 751 (1293)
+.+.+.|+|++........ . . .. +.+..++++|+|||+++++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 4678999999887632211 0 0 00 12234567999999999999999999999999999999
Q ss_pred HHhCCCCC--CceeEEEEEcCccCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHH-HH
Q 000773 752 VLAGRKTG--GYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAK----EVSKEDKII-FV 822 (1293)
Q Consensus 752 ~l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~----~~~~~~~~~-~~ 822 (1293)
+|+|+..+ .+.+|+|.+||.+... ..+++.++|++|+|.+++.+||+||+.|++.++.+. ..+++++.+ .+
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998532 2468999999987643 234567999999999999999999999998877543 234444333 35
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 000773 823 EEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 901 (1293)
Q Consensus 823 ~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~ 901 (1293)
+++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 6789999999999999998888999999999999999999999999999999999999999999999999875 999999
Q ss_pred EecCCCHHHHHHHhHhheeecCcEEEEeCCCCCChhHHHHHHHhCCCCCCCCCCCCcccchhhccchHHHh---------
Q 000773 902 TIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEKYNPATWMLEVSSAAAEV--------- 972 (1293)
Q Consensus 902 ~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~~~~~~--------- 972 (1293)
++|||+.++++.||++++|.+ |+++|+|+. +++.+||+++ |+ .||++.|||||++++.+++.+.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~l-G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHc-CC-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 999998789999999999985 899999996 5789999999 55 6999999999999998764321
Q ss_pred -hhchhHHHHHhhcHHHHHHHHHHhhhcCCC---------------CCCCCccccccCCchhHHHHHHHHHHHHHHHhcC
Q 000773 973 -RLGMDFADAYKSSSLCQRNKALVNELSTPP---------------RGAKDLYFATQYSQSTWGQFKSCLWKQWWTYWRS 1036 (1293)
Q Consensus 973 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~ 1036 (1293)
....++++.|++|+.+++....+++..... ...+.......+..|+|+|+++|++|+++++|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 123578899999988776555443321110 0000111233577899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhHHHHHHhcCCCCChH
Q 000773 1037 PDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQPVVAVERTVFYRERAAGMYSAL 1116 (1293)
Q Consensus 1037 ~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~ 1116 (1293)
|.++++|+++.+++|+++|++||+++. +..+++++.|++|+++++.+++++.++ +.+..||+||+||+.+|+|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHH
Confidence 999999999999999999999999986 456788999999999999999887776 4456799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhceeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 000773 1117 PYAIAQVIVEIPYVLFQTTYYTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQVAAIFAAAFYALF 1196 (1293)
Q Consensus 1117 ~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 1196 (1293)
+|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||..+|+.+++++++++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCcc----hhhhHhhhCHHHHHHHHHHHHhhCCCcccccc--cC---C--------CC----------CCCHH
Q 000773 1197 NLFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSISV--PG---M--------AQ----------KPTIK 1249 (1293)
Q Consensus 1197 ~lf~G~~i~~~----~~~w~~~isp~~y~~~~l~~ne~~~~~~~~~~--~~---~--------~~----------~~~~~ 1249 (1293)
++|+||++|.+ ||+|++|+||++|+|||+++|||++..++|.. |. + .| ..++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 99999999986 99999999999999999999999998876631 21 0 11 12456
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000773 1250 AYIEDHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQ 1291 (1293)
Q Consensus 1250 ~~~~~~~~~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1291 (1293)
+|+...||++.+|+|+|++||++|+++|+++++++++++++.
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~ 696 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGA 696 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888878999999999999999999999999999999998743
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-88 Score=896.43 Aligned_cols=591 Identities=23% Similarity=0.409 Sum_probs=493.6
Q ss_pred ccceeEEEeeeEEEEECCc------cc-----------cc-cc---ccccccccccceeeeeecCcEEEEECCCCccHHH
Q 000773 690 FTPLAMSFDSVYYYVDMPP------EM-----------KE-QG---VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTT 748 (1293)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~------~~-----------~~-~~---~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTT 748 (1293)
.+.+.+.|+|+++..+... .+ .+ .+ .+..++.||+|||+.++|||+++|+|||||||||
T Consensus 127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 3467899999998766211 10 00 01 1123577999999999999999999999999999
Q ss_pred HHHHHhCCCCCC-ceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHH--
Q 000773 749 LMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKE-------VSKEDK-- 818 (1293)
Q Consensus 749 Ll~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~-------~~~~~~-- 818 (1293)
|||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.+++++||+|||.|++.++.... ...+++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999986542 3589999999987544446779999999999999999999999987653211 111111
Q ss_pred ----------------------HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 819 ----------------------IIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 819 ----------------------~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
...++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+++||||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCChhHHHHHHHhCCCCCCCCCC
Q 000773 877 LDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPKIKEK 955 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1293)
||+.++.++++.|+++++ .|+|||+++|||+.++++.||++++|.+ |+++|+||. +++.+||+++ |+ .||++
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~l-Gf-~cP~~ 439 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESC-GF-KCPER 439 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHc-CC-CCCCC
Confidence 999999999999999986 4899999999998889999999999985 899999996 5789999999 55 69999
Q ss_pred CCcccchhhccchHHHh------------hhchhHHHHHhhcHHHHHHHHHHhhhcCCCCCCCCccccccCCchhHHHHH
Q 000773 956 YNPATWMLEVSSAAAEV------------RLGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWGQFK 1023 (1293)
Q Consensus 956 ~n~a~~~~~~~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 1023 (1293)
.|||||++++.+..+.. ....++++.|+.|..+++....++.................|..+++.|++
T Consensus 440 ~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~ 519 (1470)
T PLN03140 440 KGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519 (1470)
T ss_pred CChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHH
Confidence 99999999998754321 113467889999887766544332210000001111122457889999999
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhHH
Q 000773 1024 SCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQPVVAVERTV 1103 (1293)
Q Consensus 1024 ~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v 1103 (1293)
.|++|++++++||+.++..|+++.+++|+++|++||+++.+..+..+.+.+.|++||++++.++.++.++ +.++.||+|
T Consensus 520 ~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l-~~~~~~r~v 598 (1470)
T PLN03140 520 ACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAEL-ALMIQRLPV 598 (1470)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccch
Confidence 9999999999999999999999999999999999999987654555566788999999998888776554 677899999
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhceeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Q 000773 1104 FYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSITPNHQ 1183 (1293)
Q Consensus 1104 ~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1183 (1293)
|+|||..++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++|+..
T Consensus 599 f~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~ 678 (1470)
T PLN03140 599 FYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMI 678 (1470)
T ss_pred hHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcc----hhhhHhhhCHHHHHHHHHHHHhhCCCcccc-cccCCCCCCCHHHHHHhhcCC
Q 000773 1184 VAAIFAAAFYALFNLFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSI-SVPGMAQKPTIKAYIEDHFGY 1258 (1293)
Q Consensus 1184 ~a~~~~~~~~~~~~lf~G~~i~~~----~~~w~~~isp~~y~~~~l~~ne~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1258 (1293)
+|+.+++++++++++|+||++|++ ||+|++|+||++|+++|+++|||.+..+.. .|.+ .+ .+.|+.+++.+|+
T Consensus 679 ~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~-~~-~~~G~~~L~~~g~ 756 (1470)
T PLN03140 679 IANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD-NS-TRLGTAVLNIFDV 756 (1470)
T ss_pred HHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCC-CC-cccHHHHHHhcCc
Confidence 999999999999999999999986 999999999999999999999997765432 1122 11 2334555578999
Q ss_pred CCC--CchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 000773 1259 EPD--FMGPVAAVLVAFTVFFAFMFAFCIKTLNF 1290 (1293)
Q Consensus 1259 ~~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1290 (1293)
..+ |+|+++++|+||+++|+++++++|+++++
T Consensus 757 ~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 757 FTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 754 57999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-82 Score=781.03 Aligned_cols=564 Identities=25% Similarity=0.474 Sum_probs=496.1
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC-ceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
+..+|+|+|+-++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.++..-++.++|++|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999965432 2357999999988765447889999999999999999
Q ss_pred HHHHHHHHHhcCCCC----CCHHHHHH-HHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 798 KESLIYSAFLRLAKE----VSKEDKII-FVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~----~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+|+|.|+++++.+.. .+++++.+ ..+.+++.+||.+|+|+++|+...||+||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999988743 23333332 5788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCChhHHHHHHHhCCCCCC
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEAIPGVPK 951 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~ 951 (1293)
+|+|||+.++.++.+.||++++. +.|++++.|||+.+++++||+|++|.+ |+++|+||. .++.+||+++ |+ .
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~-Gf-~ 359 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDM-GF-K 359 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhc-Cc-c
Confidence 99999999999999999999875 899999999999999999999999996 999999998 4789999998 55 6
Q ss_pred CCCCCCcccchhhccchHHHhh------------hchhHHHHHhhcHHHHHHHHHHhhhcCCCCCCCCccccccCCchhH
Q 000773 952 IKEKYNPATWMLEVSSAAAEVR------------LGMDFADAYKSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTW 1019 (1293)
Q Consensus 952 ~~~~~n~a~~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1019 (1293)
||+..++|||+.++++..++.+ ...++.+.|..++.+++....++.........+.......|..++|
T Consensus 360 cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~ 439 (1391)
T KOG0065|consen 360 CPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYW 439 (1391)
T ss_pred CCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHH
Confidence 9999999999999988432211 1257899999999888765444332222222222334457889999
Q ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhhHh
Q 000773 1020 GQFKSCLWKQWWTYWRSPDYNLVRCCFTLACALMIGTVFWKVGTKREDTTDLTMIIGAMYAAILFVGISNCSTVQPVVAV 1099 (1293)
Q Consensus 1020 ~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~ 1099 (1293)
.|+++|++|.++.+.||..++..++++.+++|+++|++|++.+. .+..+.+.+.|++||++++.++.++.++. ...+
T Consensus 440 ~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~-~~~~ 516 (1391)
T KOG0065|consen 440 EQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIA-LTFQ 516 (1391)
T ss_pred HHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHH-HHHh
Confidence 99999999999999999999999999999999999999999983 46677889999999999999999888874 4557
Q ss_pred hhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHhhceeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000773 1100 ERTVFYRERAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAMVSFEWTAAKFWWFFFVTFFSFLYFTYYGMMTVSIT 1179 (1293)
Q Consensus 1100 er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1293)
.||||+|||...+|++++|.++.+++++|+.++.+++|.+|+||++||++++++||.++++++++..|++++++++++++
T Consensus 517 ~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~ 596 (1391)
T KOG0065|consen 517 RLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLS 596 (1391)
T ss_pred hcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCcc----hhhhHhhhCHHHHHHHHHHHHhhCCCccccc--ccCCCC---------
Q 000773 1180 PNHQVAAIFAAAFYALFNLFSGFFIPRP----WWIWYYWICPVAWTVYGLIVSQYGDVEDSIS--VPGMAQ--------- 1244 (1293)
Q Consensus 1180 ~~~~~a~~~~~~~~~~~~lf~G~~i~~~----~~~w~~~isp~~y~~~~l~~ne~~~~~~~~~--~~~~~~--------- 1244 (1293)
++...|+.++++.+++..+++||+||.+ ||+|++|+||+.|++|++++|||++.+.+|. .|++.+
T Consensus 597 ~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~ 676 (1391)
T KOG0065|consen 597 RTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCA 676 (1391)
T ss_pred chHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccch
Confidence 9999999999999999999999999986 9999999999999999999999999998875 122111
Q ss_pred ---------CCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000773 1245 ---------KPTIKAYIEDHFGYEPDFMGPVAAVLVAFTVFFAFMFAFCIKTLNFQT 1292 (1293)
Q Consensus 1245 ---------~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1292 (1293)
...+.+|++..|++++.|.|+++||++||.++|.++..+++.|+++.+
T Consensus 677 ~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~ 733 (1391)
T KOG0065|consen 677 ATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLK 733 (1391)
T ss_pred hhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 012356888888899999999999999999999999999999998643
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-74 Score=709.53 Aligned_cols=547 Identities=28% Similarity=0.478 Sum_probs=457.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
++||+|||||||||||++|+|+.+++..++|+|++||++......++.+|||.|+|.+++++||+|++.|+++++.+.+
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~- 136 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS- 136 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-
Confidence 5899999999999999999999987667899999999888777788899999999999999999999999999876532
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
+.. .+.++++++++++|||.+|+||+||+...||+||||||||+||..|+
T Consensus 137 ------~~~------------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell 186 (613)
T KOG0061|consen 137 ------LSK------------------------EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL 186 (613)
T ss_pred ------CCH------------------------HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH
Confidence 111 11245689999999999999999999888999999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHHHHhC
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~f~~~ 240 (1293)
.||+|++|||||||||+.++.++++.|+++|++ |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++
T Consensus 187 ~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~ 265 (613)
T KOG0061|consen 187 TDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSL 265 (613)
T ss_pred cCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhC
Confidence 999999999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHhcCCc--chhhhhhcCCCCCCCCCHHHHHHHHHhcccchhhHhhccCCCCCCcCcccccccccC
Q 000773 241 GFCCPERKGTADFLQEVTSRK--DQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLSVPFDKSQGHRAAIVFKKY 318 (1293)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1293)
|++||++.||+||+.++.+.. .+...... ......+.++..+...+............ .......
T Consensus 266 G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 332 (613)
T KOG0061|consen 266 GFPCPELENPADFLLDLLSVDSGTRELEEAV--------RIAKLINKFSQTDNLKKTLEALEKSLSTS-----KKVEIGT 332 (613)
T ss_pred CCCCCCcCChHHHHHHHHccCCCchhHHhHH--------HHHHHhhhccccchhhhhHHHHhhhcccc-----ccccccc
Confidence 999999999999999988743 11100000 00000111100000000000000000000 0000111
Q ss_pred CCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCcchhhhHHHHHHHHHHHHHHHH-HH
Q 000773 319 TVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIASTVFLRTRMHTRNENDGALFIGALLFSMIINMFNGFA-EL 397 (1293)
Q Consensus 319 ~~~~~~~~~~l~~r~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~-~~ 397 (1293)
..+++.|+..+++|.+.+..|++.....+.++.+++++++|.+|++.+...... ..+.|.+++.+....+..+. .+
T Consensus 333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i 409 (613)
T KOG0061|consen 333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAV 409 (613)
T ss_pred CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHH
Confidence 678999999999999999999999999999999999999999999986554433 24567777777666665555 57
Q ss_pred HHhhhhhhhhHhhhcCCCccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000773 398 AMTIQRFPVFYKQRDLMFHPVWTFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRL 477 (1293)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~y~~~~y~la~~l~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~l~~~~~~~~~~~ 477 (1293)
..+.++++++.||+..++|+.++|+++++++++|+.++.+++|+.++|||+|+.++..+|+.+++++++....+.+++.+
T Consensus 410 ~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~ 489 (613)
T KOG0061|consen 410 PVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLF 489 (613)
T ss_pred HHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcchhhhhhhCHHHHHHHHHHHhhcCCCccccccCC-Ccccccch
Q 000773 478 IAGVCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAPRWMNRLAS-DNVTKLGA 556 (1293)
Q Consensus 478 ~~~~~~s~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~al~~ne~~~~~~~~~~~~-~~~~~~g~ 556 (1293)
+++..++...|.+++++..+++++++||+++.+.||.||+|++|+|+.+|++|+++.|||.+....|.... ..+...+.
T Consensus 490 i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~ 569 (613)
T KOG0061|consen 490 ISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGE 569 (613)
T ss_pred HHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999986322222222 34466788
Q ss_pred hhhhccCcccCCcchhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 000773 557 AVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLN 597 (1293)
Q Consensus 557 ~~l~~~~~~~~~~~~~~~~~~l~~~~v~f~~~~~~~l~~~~ 597 (1293)
.++...++...+ .|.++.++++++++|++++++.+++..
T Consensus 570 ~~l~~~~~~~~~--~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 570 DVLKQLGFEDSS--FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHHHhcCCcccc--cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888888876644 578899999999999999999988764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-73 Score=710.81 Aligned_cols=552 Identities=24% Similarity=0.410 Sum_probs=458.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++.+||+|||.|+++++.+...
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 58999999999999999999998875456899999999876555567899999999999999999999999876543210
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCc-ccccccccchhhHHHHHH
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEM-NRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqrqRv~ia~al 159 (1293)
. +. +.++.++++++.+||.+++||.+|++. .++|||||||||+||++|
T Consensus 133 ~-------~~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL 181 (617)
T TIGR00955 133 T-------KK------------------------EKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASEL 181 (617)
T ss_pred C-------HH------------------------HHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHH
Confidence 0 00 112346789999999999999999753 689999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHHHHh
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFES 239 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~f~~ 239 (1293)
+.+|++++|||||+|||+.++.++++.|+++++ +|+|+|+++|||+.++++.||++++|++|+++++|+++++.+||++
T Consensus 182 ~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~ 260 (617)
T TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSD 260 (617)
T ss_pred HcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999986 5899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHHHhcCCcchhhhhhcCCCCCCCCCHHHHHHHHHhcccchhhHhhccCCCCCCc---Ccccccccc
Q 000773 240 CGFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLSVPFDKSQ---GHRAAIVFK 316 (1293)
Q Consensus 240 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 316 (1293)
+|+.||++.|++|++.++.+....... ......+++.+.+++++..++............. .........
T Consensus 261 ~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (617)
T TIGR00955 261 LGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGI 333 (617)
T ss_pred cCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccc
Confidence 999999999999999998765322110 0011233455555554433332222111110000 000011223
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCcchhhhHHHHHHHHHHHHHHH-H
Q 000773 317 KYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIASTVFLRTRMHTRNENDGALFIGALLFSMIINMFNGF-A 395 (1293)
Q Consensus 317 ~~~~~~~~~~~~l~~r~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~ 395 (1293)
.+..+++.|+..+.+|.++..+||+..+..+.++.+++++++|++|++.+.+.. +...+.|.+|+......+.+. .
T Consensus 334 ~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~~g~lf~~~~~~~f~~~~~ 410 (617)
T TIGR00955 334 GYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNINGALFLFLTNMTFQNVFP 410 (617)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999875432 334456778887776666654 3
Q ss_pred HHHHhhhhhhhhHhhhcCCCccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCcCccHHHHHHHHHHHHHHHHHHHHHH
Q 000773 396 ELAMTIQRFPVFYKQRDLMFHPVWTFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMF 475 (1293)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~y~~~~y~la~~l~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~l~~~~~~~~~ 475 (1293)
.+..+..++++++||+..++|++++|+++++++++|+.++.+++|.+++|||+|+.+++.+|+.+++++++...++.+++
T Consensus 411 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 411 VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcchhhhhhhCHHHHHHHHHHHhhcCCCcc-ccccCCC--ccc
Q 000773 476 RLIAGVCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAPRW-MNRLASD--NVT 552 (1293)
Q Consensus 476 ~~~~~~~~s~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~al~~ne~~~~~~-~~~~~~~--~~~ 552 (1293)
++++++++++..|..++++..+++++++||+++.++||+||+|++|+||++|++++++.|||.+..+ .|..... .+.
T Consensus 491 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~ 570 (617)
T TIGR00955 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP 570 (617)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988775 3322111 123
Q ss_pred ccchhhhhccCcccCCcchhHhHHHHHHHHHHHHHHHHHHHHhc
Q 000773 553 KLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYL 596 (1293)
Q Consensus 553 ~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~v~f~~~~~~~l~~~ 596 (1293)
..|..++..+++... ++|.++++++++.++|++++++++++.
T Consensus 571 ~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 571 SSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred cChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999988764 458899999999999999999998764
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-72 Score=694.78 Aligned_cols=548 Identities=22% Similarity=0.357 Sum_probs=433.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+|||||||||||++|+|+.+|+ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+..
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~- 172 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS- 172 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-
Confidence 47999999999999999999998864 3589999999887543 34568999999999999999999999876432110
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
..+. +.++.++++++.+||++++||.+|+...++|||||||||+||++|+
T Consensus 173 ------~~~~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~ 222 (659)
T PLN03211 173 ------LTKQ------------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML 222 (659)
T ss_pred ------CCHH------------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence 0000 0123467789999999999999999889999999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHHHHhC
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~f~~~ 240 (1293)
.+|++++|||||+|||+.++.++++.|+++++ +|+|+|+++|||+.++.+.||++++|++|++++.|+.+++.+||+++
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~ 301 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESV 301 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHC
Confidence 99999999999999999999999999999986 58999999999988899999999999999999999999999999999
Q ss_pred CCCCCCCCChhhHHHHhcCCcchhhhhhcCCCCCCCCCHHHHHHHHHhcccchhhHhhccC---CC--CCC---cCcccc
Q 000773 241 GFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLSV---PF--DKS---QGHRAA 312 (1293)
Q Consensus 241 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~--~~~---~~~~~~ 312 (1293)
||+||++.||+||+.++.+.............+ ...+...+.|++... ......... .. .+. ......
T Consensus 302 G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (659)
T PLN03211 302 GFSPSFPMNPADFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEH 377 (659)
T ss_pred CCCCCCCCCHHHHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhhccccccc
Confidence 999999999999999998754321000000000 011223334432110 000000000 00 000 000000
Q ss_pred -cccccCCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhhcccCCCCCcCcchhhhHHHHHHHHHHHH
Q 000773 313 -IVFKKYTVPKMELLKACWDKEWLLIKRNSFVYVSKTVQLIIVAIIASTVFLRTRMHTRNENDGALFIGALLFSMIINMF 391 (1293)
Q Consensus 313 -~~~~~~~~~~~~~~~~l~~r~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~ 391 (1293)
.....+..+++.|+..+++|.++. +|++.....++++.+++|+++|++|++.+ ..+.+.+.|.+||.+++..+
T Consensus 378 ~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~ 451 (659)
T PLN03211 378 RSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGV 451 (659)
T ss_pred ccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHH
Confidence 001124467999999999999988 78888888999999999999999999874 12345667888888766554
Q ss_pred -HHHHHHHHhhhhhhhhHhhhcCCCccchhHHHHHHHHHhhHHHHHHHHHhhhhhhccCcCccHHHHHHHHHHHHHHHHH
Q 000773 392 -NGFAELAMTIQRFPVFYKQRDLMFHPVWTFTLPTFLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQM 470 (1293)
Q Consensus 392 -~~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~la~~l~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~l~~~~ 470 (1293)
..+..+..+..++++++|||..++|++++|++|++++++|+.++.+++|++++|||+|+.+++.+|+.|+++++++..+
T Consensus 452 ~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~ 531 (659)
T PLN03211 452 FPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLV 531 (659)
T ss_pred HHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHH
Confidence 4556777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcccccCCCCCCcchhhhhhhCHHHHHHHHHHHhhcCCCcc-----ccc
Q 000773 471 AAAMFRLIAGVCRTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAPRW-----MNR 545 (1293)
Q Consensus 471 ~~~~~~~~~~~~~s~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~al~~ne~~~~~~-----~~~ 545 (1293)
+.+++.+++++++++..|+.++++..+++++|+||+++ +||+||+|++|+||++|++++++.|||.+.+. .|.
T Consensus 532 ~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~ 609 (659)
T PLN03211 532 SQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCS 609 (659)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCC
Confidence 99999999999999999999999999999999999997 79999999999999999999999999976542 232
Q ss_pred cCCCcccccchhhhhccCcccCCcchhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 000773 546 LASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLN 597 (1293)
Q Consensus 546 ~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~v~f~~~~~~~l~~~~ 597 (1293)
... +....++.++....+. ....|.++.++++++++|+++.++.++..+
T Consensus 610 ~~~-~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 610 LPH-GSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred Ccc-cCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111 0001112223222222 234688889999999999999999887543
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-71 Score=703.01 Aligned_cols=740 Identities=21% Similarity=0.303 Sum_probs=440.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
++||+||.||||||||.+|.|+++.. +|+|.++| .++||||++|++.. ||||||.||.... .++
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~ng-TvreNILFG~~~d--~~r 612 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQNG-TVRENILFGSPYD--EER 612 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhhCC-cHHHhhhcCcccc--HHH
Confidence 47999999999999999999999865 99999998 48999999998865 9999999998764 478
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
|+.+.+.|.+++|.+.+|.+| .|.||+ ++.+||||||||++||||++
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGE-rGinLSGGQKqRIsLARAVY 659 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGD--------------------------------LTEIGE-RGINLSGGQKQRISLARAVY 659 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCC--------------------------------cceecC-CccCCcHhHHHHHHHHHHHh
Confidence 999999999998887777665 588995 56679999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHH-HHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH---H
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE---F 236 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~-~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~---~ 236 (1293)
+++||++||+|+|++|++++.++++ +++.+. +++|+|+++|| -+..+.+|.|++|++|+|...|+++|+.+ .
T Consensus 660 ~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHq--l~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~ 735 (1381)
T KOG0054|consen 660 QDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQ--LQFLPHADQIIVLKDGKIVESGTYEELLKSGGD 735 (1381)
T ss_pred ccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCc--hhhhhhCCEEEEecCCeEecccCHHHHHhcchh
Confidence 9999999999999999999999995 786664 47899999886 46889999999999999999999999974 2
Q ss_pred HHhCCCCCCCCCChhhHHHHhcCCcchhhhhhcCCCCCCCCCHHHHHHHHHhcccchhh-------HhhccCCCCCCcCc
Q 000773 237 FESCGFCCPERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHL-------ENQLSVPFDKSQGH 309 (1293)
Q Consensus 237 f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-------~~~~~~~~~~~~~~ 309 (1293)
|+++......... .+ ..... ...+......+. +..+..+...+. .......++...+.
T Consensus 736 ~~~l~~~~~~~~~-~~-----~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~ 800 (1381)
T KOG0054|consen 736 FAELAHEEESEQE-EE-----ASEKD-------LESGESSRESES--RSLESLSSEEEKSKDEKEEEDKLVQEEERETGK 800 (1381)
T ss_pred HHHHhhccchhhc-cc-----ccccc-------ccccccccchhh--hhhhhhcccccccccccchhhHHHHHHHHhcCE
Confidence 3322000000000 00 00000 000000000000 000000000000 00000000000011
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHHHHhc-ChhHHHH---HHHHHHHHHHHHHHhhhcccCCCC--Cc---CcchhhhH
Q 000773 310 RAAIVFKKYTVPKMELLKACWDKEWLLIKR-NSFVYVS---KTVQLIIVAIIASTVFLRTRMHTR--NE---NDGALFIG 380 (1293)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~~R-~~~~~~~---~~~~~~~~~l~~g~~f~~~~~~~~--~~---~~~~~~~g 380 (1293)
. -|.-.+.+... ..+.... ..........+...+|+....+.. .. .+...+.+
T Consensus 801 v------------------~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~ 862 (1381)
T KOG0054|consen 801 V------------------SWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLG 862 (1381)
T ss_pred e------------------eHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHH
Confidence 1 11111111111 1111111 111111122223333333222111 01 11122211
Q ss_pred HHHH----HHHHHHHHHHH-------------------------------HHHHhhhhhhhhHhhhcCCCccchhHHHHH
Q 000773 381 ALLF----SMIINMFNGFA-------------------------------ELAMTIQRFPVFYKQRDLMFHPVWTFTLPT 425 (1293)
Q Consensus 381 ~l~~----~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~y~~~~y~la~ 425 (1293)
...+ ..+.....++. +.+..++++.......|..+.....+++..
T Consensus 863 vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~ 942 (1381)
T KOG0054|consen 863 VYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQS 942 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHH
Confidence 1110 11111111110 111122222222222222221111111111
Q ss_pred HHHHhhHHHHHHHHHhhhhhhccCcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhccc
Q 000773 426 FLLRIPISIFESVVWVVVTYYTIGFAPEASRFFKNFLLVFLIQQMAAAMFRLIAGVCRTMIIANTGGALTLLVVFLLGGF 505 (1293)
Q Consensus 426 ~l~~lp~~~~~~~i~~~i~y~~~gl~~~~~~f~~~~l~~~l~~~~~~~~~~~~~~~~~s~~~a~~~~~~~~~~~~l~~G~ 505 (1293)
++.-+ . +..++.|...-+.--+..++..+..+...+..++.-...+.+++++|+++|+..++.++.++...|-
T Consensus 943 ~~~~l-----~--~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~ 1015 (1381)
T KOG0054|consen 943 LLNVL-----G--ILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGK 1015 (1381)
T ss_pred HHHHH-----H--HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccc
Confidence 11100 0 0111111110000001111222222223334455556677899999999999999998777632221
Q ss_pred ccCCCCCCcchhhhhhhCHHHHHHHHHHHhhcCCCccccccCCCcccccchhhhhccCcccCCcchhHhHHHHHHHHHHH
Q 000773 506 IVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAPRWMNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLF 585 (1293)
Q Consensus 506 ~i~~~~ip~~~~w~~~isp~~y~~~al~~ne~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~l~~~~v~f 585 (1293)
.+....++. .......-..|.+...++|+.+++..++.+++++
T Consensus 1016 -----------------------------~~rf~~~~~--------~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~ 1058 (1381)
T KOG0054|consen 1016 -----------------------------EERFIQEND--------ELIDENSRAFFLSISANRWLAVRLELLGNLVVLI 1058 (1381)
T ss_pred -----------------------------cHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110000000 0111112223344556789999999999888877
Q ss_pred HHHHHHHHHhc-CCCCCCCccchHhHHHHHHHhh---hhccccccccCCCCcCCCCCCCCCCCCcCchhHHHHHhhcCCC
Q 000773 586 NVLFTFTLMYL-NPPGKPQAVLSEEAAAEMVAEQ---EESKEEPRLVRPQSKKDSYPRSLSSSDANNSREMAIRRMCSRS 661 (1293)
Q Consensus 586 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (1293)
..+..+...-. ..++..+...++...-.....- ..+..| ....+++|+....
T Consensus 1059 ~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elE------------------------n~m~SVERv~eY~ 1114 (1381)
T KOG0054|consen 1059 AALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELE------------------------NNMVSVERVLEYT 1114 (1381)
T ss_pred HHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------hcchhhhHHHHHh
Confidence 76666655443 3355566666655321110000 000000 0011233333222
Q ss_pred C-CCCCCCCCCchhhhhcCCCCCCCccccccceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEEC
Q 000773 662 N-PNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMG 740 (1293)
Q Consensus 662 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G 740 (1293)
+ |+| .+...+... .+..||+.| .++|+|++.+... +...+|||||++|+|||.+||+|
T Consensus 1115 ~~~~E-~p~~~~~~~-pp~~WP~~G--------~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVG 1173 (1381)
T KOG0054|consen 1115 DIPSE-APLEIEESR-PPPSWPSKG--------EIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVG 1173 (1381)
T ss_pred cCCCC-CCCCCcCCC-CCCCCCCCC--------eEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeC
Confidence 2 333 111111111 466788888 4799998765532 33569999999999999999999
Q ss_pred CCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH
Q 000773 741 VSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKED 817 (1293)
Q Consensus 741 ~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~ 817 (1293)
++|||||||+++|.+...+ .+|+|.|||.++.+ ..+|++++.+||||.+|.. |+|.||.-. ...++++
T Consensus 1174 RTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf------~e~sD~~ 1244 (1381)
T KOG0054|consen 1174 RTGAGKSSLILALFRLVEP--AEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF------DEYSDDE 1244 (1381)
T ss_pred CCCCCHHHHHHHHHHhcCc--cCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcc------cccCHHH
Confidence 9999999999999997763 57999999998765 4578889999999999865 999998632 1222322
Q ss_pred HHHHHHHHHHHcCCcccc-------cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 000773 818 KIIFVEEVMDLVELESLK-------DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890 (1293)
Q Consensus 818 ~~~~~~~~l~~l~l~~~~-------~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 890 (1293)
+.++++..+|.+.- |..+. ++..++|-||||.+|+||||+++++||+|||+|+++|++|...|+++||
T Consensus 1245 ----IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR 1319 (1381)
T KOG0054|consen 1245 ----IWEALERCQLKDVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 1319 (1381)
T ss_pred ----HHHHHHHhChHHHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHH
Confidence 46667766665433 33333 3456899999999999999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 891 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 891 ~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+..+ ++|||++.|+.+ ....+|||+||++ |+++++|+|.
T Consensus 1320 ~~F~-dcTVltIAHRl~--TVmd~DrVlVld~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1320 EEFK-DCTVLTIAHRLN--TVMDSDRVLVLDA-GRVVEFDSPA 1358 (1381)
T ss_pred HHhc-CCeEEEEeeccc--hhhhcCeEEEeeC-CeEeecCChH
Confidence 9764 799999999976 5667999999986 9999999874
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-67 Score=695.73 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=187.9
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+..+|++..... +++.+|+|||+.|++||++||+||||||||||+|+|+|...+ .+|+|.++|.+..
T Consensus 1938 L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1938 LRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSIL 2004 (2272)
T ss_pred EEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 567777654310 125699999999999999999999999999999999998763 4899999998864
Q ss_pred h--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000773 775 Q--ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852 (1293)
Q Consensus 775 ~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 852 (1293)
. ...++.+|||||++.+++.+||+|++.+.+.++. .+.++.++.++++++.+||.+.+|+.++ +||||||
T Consensus 2005 ~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqK 2076 (2272)
T TIGR01257 2005 TNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNK 2076 (2272)
T ss_pred chHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHH
Confidence 2 2245679999999999999999999998776543 2334444567899999999998888876 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 853 qrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||+||+||+.+|+||+|||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...|||+++|.+ |++++.|++
T Consensus 2077 qRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~ 2154 (2272)
T TIGR01257 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI 2154 (2272)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999999999999999999878999999999975 67788999999985 899999986
Q ss_pred CCChhHHHHHH
Q 000773 933 GRNSHKVIEYY 943 (1293)
Q Consensus 933 ~~~~~~~~~~~ 943 (1293)
+++...|
T Consensus 2155 ----q~Lk~~~ 2161 (2272)
T TIGR01257 2155 ----QHLKSKF 2161 (2272)
T ss_pred ----HHHHHHh
Confidence 3454444
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=652.63 Aligned_cols=215 Identities=29% Similarity=0.451 Sum_probs=181.9
Q ss_pred ceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCc
Q 000773 692 PLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 771 (1293)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 771 (1293)
.-+++++||++.++..| +.+||+|+|+++++|+.+||+|||||||||.+.+|-+..+ +..|.|.+||.
T Consensus 985 ~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~ 1052 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGV 1052 (1228)
T ss_pred eeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCc
Confidence 44689999999887654 4679999999999999999999999999999999998765 45899999999
Q ss_pred cCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCcccccccccC
Q 000773 772 PKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDL-------VELESLKDAIVGL 841 (1293)
Q Consensus 772 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~~~ 841 (1293)
+++. ..+|+++|.|.|+|.||. -|++||+.|+ . . ..+.++ +.++++. .+|.+-.||.+|+
T Consensus 1053 dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG-~---~-~vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vGe 1122 (1228)
T KOG0055|consen 1053 DIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYG-S---E-EVSEEE----IIEAAKLANAHNFISSLPQGYDTRVGE 1122 (1228)
T ss_pred ccccCCHHHHHHhcceeccCchhhc-ccHHHHHhcc-C---C-CCCHHH----HHHHHHHhhhHHHHhcCcCcccCccCc
Confidence 8765 346788999999999985 5999999987 1 1 134433 2333333 3566778999996
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
.+ .+||||||||++||||+++||+||||||.||.||+++.+.|++.|.+.. .|+|.|++.|+++ ..+.+|.|.+++
T Consensus 1123 rG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1123 RG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLK 1198 (1228)
T ss_pred cc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEE
Confidence 54 4899999999999999999999999999999999999999999999864 5899999999975 678899999998
Q ss_pred cCcEEEEeCCCC
Q 000773 922 RGGQVIYSGPLG 933 (1293)
Q Consensus 922 ~~G~~~~~g~~~ 933 (1293)
+ |+|++.|+.+
T Consensus 1199 ~-G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1199 N-GKVVEQGTHD 1209 (1228)
T ss_pred C-CEEEecccHH
Confidence 5 9999999853
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=668.81 Aligned_cols=211 Identities=23% Similarity=0.316 Sum_probs=175.8
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++|+|++++.+. +.+.+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEec
Confidence 5899999877631 224699999999999999999999999999999999998763 479999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 843 (1293)
.+ ..+|+.+++|||++.+++. |+||||.+.. ..++++ +.++++..++.+ -.|+.++. +
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge-~ 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSE-A 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccC-C
Confidence 54 4567889999999999976 9999997531 223332 566677666643 34566664 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999875 4899999999864 5677999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|++++.|+++
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 9999999874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-63 Score=578.64 Aligned_cols=203 Identities=27% Similarity=0.375 Sum_probs=171.2
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC--Ch---hcccceEEEEccCC--CC
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK--KQ---ETFARISGYCEQND--IH 791 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~--~~---~~~~~~~~~v~q~~--~~ 791 (1293)
...+++||||++++||++||+|+||||||||.++|+|..++ ..|.|.++|.+. +. ...++.+-+++|++ .+
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SL 380 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCccccc
Confidence 35689999999999999999999999999999999998774 579999999762 11 12345566677765 68
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 792 SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
.|.+||++++.-........ ...++.+++.++++.+||.. ..+++.. +||||||||++|||||+.+|++|++
T Consensus 381 nPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ryP~-----elSGGQrQRvaIARALa~~P~lli~ 453 (539)
T COG1123 381 NPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFLDRYPH-----ELSGGQRQRVAIARALALEPKLLIL 453 (539)
T ss_pred CccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHHhcCch-----hcCcchhHHHHHHHHHhcCCCEEEe
Confidence 89999999998765443322 24556678999999999986 5666644 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||||.||+..+.++.++|+++.++ |.|.|++|||.+ -+...|||+++|.+ |+++..||.
T Consensus 454 DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 9999999999999999999999876 999999999975 46678999999985 999999975
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-62 Score=658.05 Aligned_cols=211 Identities=22% Similarity=0.320 Sum_probs=175.8
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++|+|++++.+. +.+.+|+|+|++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEh
Confidence 4899999887631 224699999999999999999999999999999999998763 579999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
.+ ..+++.++||||++.+++. |+||||.+. ...++++ +.++++..++.+. .|+.++. +
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~------~~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~ 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPF------SEHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSE-G 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCC------CCCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecC-C
Confidence 54 4567889999999999975 999999642 1223332 5667777766542 3556664 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|++ +....+|+|++|++
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRL--NTIIDCDKILVLSS- 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999875 489999999986 46677999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|++++.|+++
T Consensus 1445 G~ivE~Gt~~ 1454 (1495)
T PLN03232 1445 GQVLEYDSPQ 1454 (1495)
T ss_pred CEEEEECCHH
Confidence 9999999863
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-62 Score=599.22 Aligned_cols=208 Identities=21% Similarity=0.361 Sum_probs=171.1
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccCC---CCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQND---IHS 792 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 792 (1293)
+.+|+|+||++++||++||+||||||||||+|+|+|..++ +.+|+|.++|.++.. ...++.++|++|++ .++
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 4589999999999999999999999999999999997642 147999999987532 12245689999995 478
Q ss_pred CCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 793 PQVTVKESLIYSAFLRLAK--EVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
+.+||.||+.+........ ....++..++++++++.+++. +..++.++ .|||||||||+||+||+.+|++|+
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lll 428 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILI 428 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEE
Confidence 8999999998753211110 012233345678999999996 56677665 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRN 935 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~ 935 (1293)
|||||+|||+.++..+.++|++++++|+|||++||+++ ++.+.+|++++|.+ |+++..|+.++.
T Consensus 429 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 492 (506)
T PRK13549 429 LDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNL 492 (506)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccC
Confidence 99999999999999999999999888999999999975 57788999999985 899998887643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-61 Score=648.49 Aligned_cols=211 Identities=21% Similarity=0.293 Sum_probs=176.2
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++|+|++++.+. +...+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEEc
Confidence 5899999887642 123599999999999999999999999999999999998763 479999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 843 (1293)
++ ..+++.+++|||++.+|+. |+||||... ...++++ +.++++..++.+ -.|+.++. +
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~------~~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e-~ 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPF------SQYSDEE----VWWALELAHLKTFVSALPDKLDHECAE-G 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCcc------cCCCHHH----HHHHHHHcCcHHHHhhCccCCCceecC-C
Confidence 54 4567889999999999986 999999631 1233333 566777777653 34666664 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|++ +....+|+|++|++
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl--~ti~~~DrIlVld~- 1494 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRL--NTIMDYTRVIVLDK- 1494 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH--HHHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999875 489999999986 46778999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|++++.|+++
T Consensus 1495 G~IvE~G~~~ 1504 (1522)
T TIGR00957 1495 GEVAEFGAPS 1504 (1522)
T ss_pred CEEEEECCHH
Confidence 9999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-62 Score=596.29 Aligned_cols=204 Identities=21% Similarity=0.351 Sum_probs=169.8
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccCC---CCCCC
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQND---IHSPQ 794 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 794 (1293)
+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++ .+++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 79999999999999999999999999999999998763 47999999977532 12345699999996 57889
Q ss_pred CCHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 795 VTVKESLIYSAFLRLA---KEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+||.||+.+....... .....++..+.++++++.+|+. +..++.++ .|||||||||+||+||+.+|++|+|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllL 419 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLIL 419 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999874321110 0112233345678999999995 56777665 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~ 934 (1293)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++..|+.++
T Consensus 420 DEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 420 DEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred cCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999999999999999999999878999999999975 57788999999985 89999888754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=605.58 Aligned_cols=226 Identities=19% Similarity=0.225 Sum_probs=180.3
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++........ .....+.+.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 314 L~~~~l~~~y~~~~~~--~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~ 389 (623)
T PRK10261 314 LQVRNLVTRFPLRSGL--LNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRID 389 (623)
T ss_pred EEEeeeEEEEcCCCcc--ccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 6778887655311000 00000124699999999999999999999999999999999998763 4799999998653
Q ss_pred h------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000773 775 Q------ETFARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVT 845 (1293)
Q Consensus 775 ~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 845 (1293)
. ..+++.++|++|++ .+++.+||.|++.+....+. ....++..+++.++++.+||. +..++.++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~----- 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPH----- 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc-----
Confidence 2 12356799999997 58899999999987643321 112334445688999999995 56666654
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 846 ~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||++||+++ .+...+|++++|.+ |
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G 540 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-G 540 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999975 56778999999985 8
Q ss_pred EEEEeCCCC
Q 000773 925 QVIYSGPLG 933 (1293)
Q Consensus 925 ~~~~~g~~~ 933 (1293)
++++.|+.+
T Consensus 541 ~iv~~g~~~ 549 (623)
T PRK10261 541 QIVEIGPRR 549 (623)
T ss_pred EEEEecCHH
Confidence 999999864
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=595.61 Aligned_cols=202 Identities=20% Similarity=0.344 Sum_probs=167.9
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccC---CCCCCC
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQN---DIHSPQ 794 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~---~~~~~~ 794 (1293)
+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|+ ..+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 89999999999999999999999999999999998653 47999999987532 1234568999998 468889
Q ss_pred CCHHHHHHHHHHhc---CC---CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 795 VTVKESLIYSAFLR---LA---KEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 795 lTv~e~l~~~~~~~---~~---~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
+||+||+.+....+ .. .....++....++++++.+|+. +..++.++ .|||||||||+|||+|+.+|++
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~l 430 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEV 430 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCE
Confidence 99999998653211 00 0011222234578999999996 67777765 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|.+ |+++..++.
T Consensus 431 LlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999999999999999999999878999999999975 57788999999985 899888765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-61 Score=590.70 Aligned_cols=204 Identities=20% Similarity=0.246 Sum_probs=167.3
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCC---CCCCC
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQND---IHSPQ 794 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~~ 794 (1293)
+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 59999999999999999999999999999999998653 479999999865321 1235689999984 47889
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
+|+.||+......+........+..+.++++++.+|+. +..++.++ .|||||||||+||+||+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 99999986421111110011222234578999999997 66777655 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~ 934 (1293)
|+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|.+ |+++..|.++.
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 9999999999999999999888999999999986 57788999999974 89998887654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-61 Score=594.24 Aligned_cols=202 Identities=23% Similarity=0.317 Sum_probs=169.0
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------cccceEEEEccCC--CC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------TFARISGYCEQND--IH 791 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~~ 791 (1293)
+.+|+||||++++||++||+||||||||||+|+|+|..+ .+|+|.++|.++... .+++.+||++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999763 379999999865321 1245689999997 47
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 792 SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
++.+||.||+.+....+.. .....+..++++++++.+|+. +..++.++ +|||||||||+||+||+.+|++|+|
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPA-----EFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCc-----cCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 8899999999886432211 122333445678999999997 45666654 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||||+|||+.++..+++.|++++++ |+|||++||+++ .+.+.+|++++|.+ |+++..|+.
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999865 899999999975 56778999999985 899998875
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-61 Score=591.05 Aligned_cols=200 Identities=23% Similarity=0.359 Sum_probs=166.2
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEc-Ccc---CCh------hcccceEEEEccCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS-GFP---KKQ------ETFARISGYCEQND 789 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~-g~~---~~~------~~~~~~~~~v~q~~ 789 (1293)
+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++ |.+ ... ...++.+||++|++
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence 4699999999999999999999999999999999998653 47999996 532 111 12245689999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-----LKDAIVGLPGVTGLSIEQRKRLTIAVELVAN 864 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-----~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~ 864 (1293)
.+++.+||+||+.+...+. ...++...+++++++.+|+.+ ..++.++ +|||||||||+||+||+.+
T Consensus 375 ~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-----~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPD-----ELSEGERHRVALAQVLIKE 445 (520)
T ss_pred ccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChh-----hCCHHHHHHHHHHHHHhcC
Confidence 9999999999998753221 122333456788999999975 3455544 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 865 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 865 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|++|+|||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.+|++++|.+ |+++..|++
T Consensus 446 p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999999765 899999999975 57778999999975 899988875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=633.60 Aligned_cols=210 Identities=21% Similarity=0.309 Sum_probs=175.9
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++|+||+++.+. +.+.+|+||||+|+|||.+||+|+||||||||+++|.|..+ .+|+|.+||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 5899999987642 23569999999999999999999999999999999999864 379999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
.. ..+++.++||||++.+|+. |+||||... ...+++ .+.++++..++.+. .|+.++. +
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~------~~~tde----ei~~aL~~~~L~~~i~~lp~GLdt~v~e-~ 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY------EQWSDE----EIWKVAEEVGLKSVIEQFPDKLDFVLVD-G 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcc------cCCCHH----HHHHHHHHCCCHHHHHhCcccccccccc-C
Confidence 54 4567889999999999975 999999532 122332 35678888877542 4566664 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|++ +....+|+|++|++
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl--~ti~~~DrIlvL~~- 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRV--EALLECQQFLVIEG- 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH--HHHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999875 479999999986 46678999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|+++..|++.
T Consensus 1427 G~ivE~g~p~ 1436 (1490)
T TIGR01271 1427 SSVKQYDSIQ 1436 (1490)
T ss_pred CEEEEeCCHH
Confidence 8999999863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=628.13 Aligned_cols=216 Identities=20% Similarity=0.330 Sum_probs=176.7
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC-------------
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG------------- 760 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~------------- 760 (1293)
.++|+||++..+.. +++++|+|+||+++||+.+||+||||||||||+++|.|..++.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 58999999876421 1346999999999999999999999999999999999976541
Q ss_pred ---------------------------------------ceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHH
Q 000773 761 ---------------------------------------YIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTVK 798 (1293)
Q Consensus 761 ---------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 798 (1293)
+.+|+|.+||.++.+ ..+++.+|||+|++.+| ..|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 147999999998754 45678899999999998 57999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000773 799 ESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-------SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871 (1293)
Q Consensus 799 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlD 871 (1293)
|||.++. ...+.++ ++++++..++. +-.|+.+|. +..+||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~-----~~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK-----EDATRED----VKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9998751 1233333 45666665543 345788884 34579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhHhheeecC---cE-EEEeCCC
Q 000773 872 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRG---GQ-VIYSGPL 932 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~---G~-~~~~g~~ 932 (1293)
||||+||+.+.+.|++.|+++. .+++|+|+++|++ +..+.+|+|++|+++ |+ +++.|+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 3589999999986 467889999999862 67 5578885
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=584.62 Aligned_cols=206 Identities=18% Similarity=0.336 Sum_probs=169.6
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccCC---CCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQND---IHS 792 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~ 792 (1293)
+.+|+|+||++++||+++|+|||||||||||++|+|..++ +.+|+|.++|.+... ...++.+||++|+. .++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 4589999999999999999999999999999999998652 147999999987632 12345689999995 588
Q ss_pred CCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 793 PQVTVKESLIYSAFLRLA--KEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
+.+||+||+.+...-... ......+....++++++.+++.+ ..++.++ .|||||||||+||++|+.+|++|+
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lll 426 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLI 426 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEE
Confidence 999999999875321110 01122333456789999999964 5676655 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||||+|||+.++..+++.|++++++|.|||++||+++ ++.+.+|++++|.+ |+++..++.+
T Consensus 427 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred EcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999999999999888999999999975 57788999999975 8888877653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=583.34 Aligned_cols=205 Identities=17% Similarity=0.305 Sum_probs=170.3
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccCC---CCCC
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQND---IHSP 793 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~ 793 (1293)
.+++|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|++... ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 48999999999999999999999999999999999865 357999999986532 12345689999986 4889
Q ss_pred CCCHHHHHHHHHHhcCCC-C--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 794 QVTVKESLIYSAFLRLAK-E--VSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
.+|+.||+.+........ . ....+..+.++++++.+++. +..++.++ .|||||||||+||++|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEE
Confidence 999999997643211100 0 11222334578899999994 66777765 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~ 934 (1293)
|||||+|||+.++..+++.|++++++|.|||++|||++ ++.+.+|++++|.+ |++++.|+.++
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 99999999999999999999999888999999999975 57788999999985 89999998764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-59 Score=627.13 Aligned_cols=211 Identities=23% Similarity=0.291 Sum_probs=176.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++|+||+++.+. +...+|+||||+|+|||.+||+|+||||||||+++|.|..++ .+|+|.+||.++
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEc
Confidence 5899999887632 224599999999999999999999999999999999998763 479999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
.. ..+++.++||||++.+|+. |++|||... ...+++ .+.++++..++.+. .|+.++. +
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge-~ 1442 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASSA----EVWAALELVGLRERVASESEGIDSRVLE-G 1442 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCHH----HHHHHHHHCCChHHHhhCcccccccccC-C
Confidence 54 4577889999999999875 999999531 123333 36778888877653 4666664 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 844 VTGLSIEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~-p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
..+||||||||++|||||+++ |+||+||||||+||+.+...|++.|++.. +++|||+++|++ +....+|+|++|++
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMDH 1519 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEEC
Confidence 457999999999999999996 89999999999999999999999999864 479999999986 56788999999985
Q ss_pred CcEEEEeCCCC
Q 000773 923 GGQVIYSGPLG 933 (1293)
Q Consensus 923 ~G~~~~~g~~~ 933 (1293)
|++++.|+++
T Consensus 1520 -G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1520 -GAVAEMGSPR 1529 (1560)
T ss_pred -CEEEEECCHH
Confidence 9999999863
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-59 Score=573.73 Aligned_cols=204 Identities=16% Similarity=0.237 Sum_probs=164.1
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCC---CCCC
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQND---IHSP 793 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~---~~~~ 793 (1293)
.+|++||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.++|++|++ .+++
T Consensus 262 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 489999999999999999999999999999999998763 479999999776421 1245589999985 4688
Q ss_pred CCCHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 794 QVTVKESLIYSAF---LRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 794 ~lTv~e~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
.+|+.+|..+... ..........+....++++++.+++. +..++.++ +|||||||||+||++|+.+|+||+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG-----SLSGGNQQKVIIGRWLLTQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc-----cCCcHHHHHHHHHHHHhcCCCEEE
Confidence 8998877433210 11001012222334578889999995 45566654 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||||+|||+.++..+++.|++++++|+|||++||+++ ++...+|++++|.+ |+++..++..
T Consensus 415 LDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 415 LDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred EcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999999999999888999999999975 57788999999985 8988777653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-58 Score=563.33 Aligned_cols=204 Identities=21% Similarity=0.336 Sum_probs=158.6
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQNDIHSP 793 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~~ 793 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+... ...++.+||++|++.+++
T Consensus 271 ~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (490)
T PRK10938 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDY 349 (490)
T ss_pred CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhc
Confidence 345699999999999999999999999999999999996431 137999999976421 123456999999876544
Q ss_pred --CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 794 --QVTVKESLIYSAFL--RLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 794 --~lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
..|+++++.+.... ........ +..++++++++.+|+.+ ..++.++ .|||||||||+||+||+.+|++|
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~ll 423 (490)
T PRK10938 350 RVSTSVRNVILSGFFDSIGIYQAVSD-RQQKLAQQWLDILGIDKRTADAPFH-----SLSWGQQRLALIVRALVKHPTLL 423 (490)
T ss_pred ccCCcHHHHHHhccccccccccCCCH-HHHHHHHHHHHHcCCchhhccCchh-----hCCHHHHHHHHHHHHHhcCCCEE
Confidence 35777766543211 11111122 22345789999999987 7777655 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHH-HHhHhheeecCcEEEEeC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~v~~l~~~G~~~~~g 930 (1293)
+|||||+|||+.++..+.+.|++++++| .|||++||+++ ++.+ .+|++++|.+ |+++..-
T Consensus 424 lLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~~ 485 (490)
T PRK10938 424 ILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRYV 485 (490)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEee
Confidence 9999999999999999999999998775 47999999975 4555 4788999875 7776643
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-57 Score=488.48 Aligned_cols=203 Identities=26% Similarity=0.373 Sum_probs=176.0
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEccCC--CC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQND--IH 791 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~--~~ 791 (1293)
.+++++||+++++||.+||+|.||||||||=.+|.+...+ +|+|.++|.++.. ...++.+-.|+||| .+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 4689999999999999999999999999999999998753 5999999998753 23567789999997 47
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 792 SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
.|.+||.|-+.-+.....+ ..+..++.+++.++++.+||.. ..+++. .++|||||||++||||++.+|++++|
T Consensus 377 sPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-----hEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP-----HEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC-----cccCcchhhHHHHHHHHhcCCcEEEe
Confidence 8999999988776555443 4678889999999999999975 445543 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||||.||-.-+.+|+++|+++.++ |.+-++++||+. -+-.++|+|++|.+ |+|++.||.+
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~~ 512 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPTE 512 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCHH
Confidence 9999999999999999999999755 899999999975 36678999999975 9999999963
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-56 Score=548.56 Aligned_cols=200 Identities=22% Similarity=0.323 Sum_probs=161.3
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++.. +++.+|+|||+++++||+++|+||||||||||+++|+|..++ .+|+|.+++ +
T Consensus 325 l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~-- 386 (556)
T PRK11819 325 IEAENLSKSF-------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T-- 386 (556)
T ss_pred EEEEeEEEEE-------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c--
Confidence 6677776543 345699999999999999999999999999999999998663 479999853 1
Q ss_pred hhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000773 775 QETFARISGYCEQND-IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQR 852 (1293)
Q Consensus 775 ~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGer 852 (1293)
..+||++|++ .+++.+||+|++.+...... ....+ ..++++++.+|+.+ ..++.++ +||||||
T Consensus 387 -----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~ 451 (556)
T PRK11819 387 -----VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNRE--IPSRAYVGRFNFKGGDQQKKVG-----VLSGGER 451 (556)
T ss_pred -----eEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccccH--HHHHHHHHhCCCChhHhcCchh-----hCCHHHH
Confidence 1489999996 68889999999987542211 11111 12457899999964 4566654 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEE-EeCC
Q 000773 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI-YSGP 931 (1293)
Q Consensus 853 qrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~-~~g~ 931 (1293)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||+++ .+...+|++++|.++|++. +.|+
T Consensus 452 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 452 NRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCC
Confidence 99999999999999999999999999999999999999872 4 8999999975 5777899999998657766 4554
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-55 Score=540.84 Aligned_cols=198 Identities=19% Similarity=0.251 Sum_probs=162.2
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGF-------------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEee-------------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 36777776543 345699999999999999999999999999999999998653 4799999873
Q ss_pred ChhcccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000773 774 KQETFARISGYCEQNDI--HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 774 ~~~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgG 850 (1293)
+.+||++|++. +++.+||+|++.+.. .. . . ..++++++++.+|+. +..++.++ +||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~-~---~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G-D---DEQAVRGTLGRLLFSQDDIKKSVK-----VLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C-c---cHHHHHHHHHHcCCChhHhcCccc-----ccCHH
Confidence 35899999864 566799999986421 11 1 1 123467899999994 56666655 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEE-Ee
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI-YS 929 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~-~~ 929 (1293)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++||+++ .+...+|++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999886 459999999975 56778999999985 7776 77
Q ss_pred CCC
Q 000773 930 GPL 932 (1293)
Q Consensus 930 g~~ 932 (1293)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-55 Score=542.50 Aligned_cols=200 Identities=20% Similarity=0.305 Sum_probs=160.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 323 l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~-- 384 (552)
T TIGR03719 323 IEAENLSKGF-------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T-- 384 (552)
T ss_pred EEEeeEEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c--
Confidence 5677776543 345699999999999999999999999999999999998653 479999854 1
Q ss_pred hhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000773 775 QETFARISGYCEQND-IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQR 852 (1293)
Q Consensus 775 ~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGer 852 (1293)
..+||++|++ .+++.+||.|++.+...... ....+ ..++++++.+|+.+ ..++.++ .||||||
T Consensus 385 -----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~--~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe~ 449 (552)
T TIGR03719 385 -----VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKRE--VPSRAYVGRFNFKGSDQQKKVG-----QLSGGER 449 (552)
T ss_pred -----eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcch--HHHHHHHHhCCCChhHhcCchh-----hCCHHHH
Confidence 1489999986 47889999999987532111 11111 23457899999964 4566554 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEE-EeCC
Q 000773 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI-YSGP 931 (1293)
Q Consensus 853 qrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~-~~g~ 931 (1293)
|||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .|||++||+++ .+...+|++++|.++|++. +.|+
T Consensus 450 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 450 NRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCC
Confidence 99999999999999999999999999999999999999873 48999999975 5677899999998656766 4444
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-54 Score=533.27 Aligned_cols=197 Identities=22% Similarity=0.260 Sum_probs=162.3
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESL 801 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l 801 (1293)
.|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++ ..++|++|+..+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 48999999999999999999999999999999998763 47999885 1489999998888999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 000773 802 IYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 881 (1293)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~ 881 (1293)
.+.... .... ..++++++.+++.+..++.++ .|||||||||+||++|+.+|++|+|||||+|||+.+
T Consensus 422 ~~~~~~-----~~~~---~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSITDD-----LGSS---YYKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHhhh-----cChH---HHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 864211 1111 235789999999887787765 699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCC---hhHHHHHHHhC
Q 000773 882 AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRN---SHKVIEYYEAI 946 (1293)
Q Consensus 882 ~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~---~~~~~~~~~~~ 946 (1293)
+..+.+.|++++++ |+|||++|||+. .+...+|++++|. |++...|..... .+.+..+++.+
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHASGPMDMREGMNRFLKEL 554 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--CcceeeeecCCchhHHHHHHHHHHHc
Confidence 99999999999765 899999999975 4667899999995 477776764321 12234455555
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-53 Score=526.56 Aligned_cols=196 Identities=21% Similarity=0.327 Sum_probs=158.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++.. +++.+|+|+||+|++||++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 313 l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~--- 374 (638)
T PRK10636 313 LKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG--- 374 (638)
T ss_pred EEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC---
Confidence 6677776543 44679999999999999999999999999999999999875 34799998641
Q ss_pred hhcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000773 775 QETFARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQ 851 (1293)
Q Consensus 775 ~~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGe 851 (1293)
..+||++|+. .+.+..|+.+++.. .. . ......+.++++.+++.. ..++.++ .|||||
T Consensus 375 -----~~igy~~Q~~~~~l~~~~~~~~~~~~---~~--~----~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGe 435 (638)
T PRK10636 375 -----IKLGYFAQHQLEFLRADESPLQHLAR---LA--P----QELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGE 435 (638)
T ss_pred -----EEEEEecCcchhhCCccchHHHHHHH---hC--c----hhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHH
Confidence 2589999974 35566788776531 11 1 112245788999999963 5666655 699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEE-EeC
Q 000773 852 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI-YSG 930 (1293)
Q Consensus 852 rqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~-~~g 930 (1293)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .+...+|++++|.+ |+++ +.|
T Consensus 436 kqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g 510 (638)
T PRK10636 436 KARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDG 510 (638)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCC
Confidence 99999999999999999999999999999999999999987 349999999975 56778999999985 7876 778
Q ss_pred CC
Q 000773 931 PL 932 (1293)
Q Consensus 931 ~~ 932 (1293)
+.
T Consensus 511 ~~ 512 (638)
T PRK10636 511 DL 512 (638)
T ss_pred CH
Confidence 75
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-52 Score=524.61 Aligned_cols=201 Identities=23% Similarity=0.325 Sum_probs=160.0
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++.. +++.+|+|+||+|++||++||+|||||||||||++|+|..+ +.+|+|.+ |.+.
T Consensus 320 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~- 382 (635)
T PRK11147 320 FEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL- 382 (635)
T ss_pred EEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc-
Confidence 5667766543 44569999999999999999999999999999999999865 34799988 4321
Q ss_pred hhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHH
Q 000773 775 QETFARISGYCEQND-IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQR 852 (1293)
Q Consensus 775 ~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGer 852 (1293)
.+||++|+. .+++.+||.|++.+.... . .... ....+.++++.+++. +..++.++ .||||||
T Consensus 383 ------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGek 446 (635)
T PRK11147 383 ------EVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVNG--RPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGER 446 (635)
T ss_pred ------EEEEEeCcccccCCCCCHHHHHHhhccc-c--cccc--hHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHH
Confidence 489999985 588999999999864321 1 0111 123467889999985 45566655 6999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEE-EEeCC
Q 000773 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV-IYSGP 931 (1293)
Q Consensus 853 qrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~-~~~g~ 931 (1293)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+...+|+++++.++|++ .|.|+
T Consensus 447 qRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 447 NRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCC
Confidence 9999999999999999999999999999999999999876 459999999965 566789999999733665 45555
Q ss_pred C
Q 000773 932 L 932 (1293)
Q Consensus 932 ~ 932 (1293)
.
T Consensus 523 y 523 (635)
T PRK11147 523 Y 523 (635)
T ss_pred H
Confidence 3
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=476.08 Aligned_cols=203 Identities=19% Similarity=0.390 Sum_probs=168.3
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccC---CCCCCC
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQN---DIHSPQ 794 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~---~~~~~~ 794 (1293)
.++|+||++++||++||-|-=|||+|-|+++|.|..+ ...|+|.+||++... ...+..++|||.| +.++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 5789999999999999999999999999999999554 347999999997643 2345579999987 568899
Q ss_pred CCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000773 795 VTVKESLIYSAFLRLAK--EVSKEDKIIFVEEVMDLVELESL-KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlD 871 (1293)
++|++|+.++...+... -.+.....+.+++..+.+++... .+..+ ..||||.+|||.|||.|..+|++|+||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 99999998873322221 24444555668888999988532 23333 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 872 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||.|+|.-++.+|.++|++++++|++||++|-+.. |+...||||++|.+ |+++..=+.+
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~~ 486 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDRE 486 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 999999999999999999999999999999999975 89999999999985 8988744443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=476.02 Aligned_cols=206 Identities=24% Similarity=0.253 Sum_probs=157.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcch
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTRY 81 (1293)
Q Consensus 2 ~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~ 81 (1293)
++|||+||||||||||+|+|...|+ +|+|...+ ...++|++|++...+..||.+.+.-+... .+
T Consensus 32 iGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~-----~~ 95 (530)
T COG0488 32 IGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTVLDYVIEGFGE-----LR 95 (530)
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccHHHHHHhhhHH-----HH
Confidence 6899999999999999999999988 99998864 23689999999999899999999876431 11
Q ss_pred hhhhHhhHHhhhcCCCChhHHHHHH-HHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 82 ELLSELARREKDAGIFPEAEIDLFM-KATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
+...+..................+. ....+.+++.+..+..+|..||+++. ++.+++ ||||||.||+||++|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~-----LSGG~r~Rv~LA~aL~ 169 (530)
T COG0488 96 ELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS-----LSGGWRRRVALARALL 169 (530)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh-----cCHHHHHHHHHHHHHh
Confidence 1111111111100000111111111 22234557778889999999999887 888876 9999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeE-EEEcChhhHH
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQI-VYQGPRERVL 234 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i-~~~G~~~~~~ 234 (1293)
.+|++|+||||||+||..+..++-+.|++. .| |+|++ +|++...-+.|++|+-++.|++ .|.|.++...
T Consensus 170 ~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiV-SHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~ 239 (530)
T COG0488 170 EEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVV-SHDRYFLDNVATHILELDRGKLTPYKGNYSSYL 239 (530)
T ss_pred cCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEE-eCCHHHHHHHhhheEEecCCceeEecCCHHHHH
Confidence 999999999999999999999988888763 45 77774 6889999999999999999987 5777776544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-49 Score=491.64 Aligned_cols=200 Identities=19% Similarity=0.245 Sum_probs=155.3
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++... +++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 367778776541 124589999999999999999999999999999999998763 4799988652
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000773 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQR 852 (1293)
Q Consensus 774 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGer 852 (1293)
..+||++|+. .+.+++.++.........+ .... +.++++++.+|+.+ ..++.++ .||||||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~~----~~i~~~L~~~gl~~~~~~~~~~-----~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVPE----QKLRAHLGSFGVTGNLALQPMY-----TLSGGQK 633 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCCH----HHHHHHHHHCCCChHHhcCCcc-----ccCHHHH
Confidence 3589999985 3455666664332111111 1121 34678999999973 4555544 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEE-EeCC
Q 000773 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI-YSGP 931 (1293)
Q Consensus 853 qrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~-~~g~ 931 (1293)
|||+||++|+.+|++|+|||||+|||+.+...+.+.|++. +.|||++||++. .+...+|++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 349999999975 46678999999985 8887 6676
Q ss_pred C
Q 000773 932 L 932 (1293)
Q Consensus 932 ~ 932 (1293)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=429.56 Aligned_cols=207 Identities=19% Similarity=0.330 Sum_probs=172.4
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC----Ch-hcccceEEEEccCC---CC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK----KQ-ETFARISGYCEQND---IH 791 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~----~~-~~~~~~~~~v~q~~---~~ 791 (1293)
...+++|||++++||++||.|-.|-|-+-|+.+|+|..++ .+|+|.++|.+. +. ...+..++|||+|. .+
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Gl 348 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCcc
Confidence 3579999999999999999999999999999999997653 359999999985 22 22345689999985 56
Q ss_pred CCCCCHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 792 SPQVTVKESLIYSAFLRL----AKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
.+.+|+.||+.+...-+. ..-.......+.+.++++.++....... ...+.||||++||+-+||+|..+|++
T Consensus 349 v~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~l 424 (501)
T COG3845 349 VLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDL 424 (501)
T ss_pred ccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCE
Confidence 789999999987654321 1124455666778899999998632211 12457999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~ 934 (1293)
|+..+||.|||..+...|.+.|.+++++|+.|++++-+++ ++++++||+.+|.+ |+++...++++
T Consensus 425 LI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 425 LIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred EEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 9999999999999999999999999999999999999986 89999999999985 89998877764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=383.76 Aligned_cols=211 Identities=26% Similarity=0.370 Sum_probs=187.2
Q ss_pred ccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC----hhcccceEEEEc
Q 000773 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK----QETFARISGYCE 786 (1293)
Q Consensus 711 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~----~~~~~~~~~~v~ 786 (1293)
+++.+.+|+.++|+|||+++++||+++|+|||||||||||+||.++.. +.+|+|.++|.+.. -...|+.+|+|+
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeec
Confidence 455567788999999999999999999999999999999999999876 35899999997553 234678899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
|+..+||++||.||+..+... -...++++.++++.++|+.+||.+.+|.++. +|||||||||+|||||+.+|+
T Consensus 84 Q~fnLFPHlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKADAYPA-----QLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred ccccccccchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----ccCcHHHHHHHHHHHHcCCCC
Confidence 999999999999999986432 2345778888889999999999999998865 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++++|||||.|||+...++++.+++++++|.|+|++||+.. -..+.+|||+.|++ |+++..|++
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~-G~iie~g~p 220 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQ-GKIIEEGPP 220 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeC-CEEEEecCH
Confidence 99999999999999999999999999999999999999875 35677899999985 999999976
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=365.29 Aligned_cols=222 Identities=27% Similarity=0.367 Sum_probs=193.5
Q ss_pred cccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEcc
Q 000773 714 GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQ 787 (1293)
Q Consensus 714 ~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q 787 (1293)
.++++++.|++|||++|++||+++||||||+|||||||+|.|..++ .+|+|.++|.++.. ...++++|+++|
T Consensus 15 ~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ 92 (263)
T COG1127 15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDIPQLSEEELYEIRKRMGVLFQ 92 (263)
T ss_pred eeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcchhccCHHHHHHHHhheeEEee
Confidence 3456889999999999999999999999999999999999998774 58999999988643 135677999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-KDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 788 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
+-.+|..+||+||+.|.. +.....+++..++.+..-++.+||... .+.... +||||||||++||||++.||+
T Consensus 93 ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-----ELSGGM~KRvaLARAialdPe 165 (263)
T COG1127 93 QGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLYPS-----ELSGGMRKRVALARAIALDPE 165 (263)
T ss_pred ccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch-----hhcchHHHHHHHHHHHhcCCC
Confidence 999999999999999864 333456777777888889999999877 666544 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC----ChhHHHH
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR----NSHKVIE 941 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~----~~~~~~~ 941 (1293)
|+|+||||+||||.++..+.++|+++.+. |.|++++|||.+ +++..+|++++|.+ |+|+..|++++ ..+-+.+
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~sd~P~v~q 243 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLASDDPWVRQ 243 (263)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHhCCCHHHHH
Confidence 99999999999999999999999999877 999999999986 68999999999985 89999999763 3345777
Q ss_pred HHHhC
Q 000773 942 YYEAI 946 (1293)
Q Consensus 942 ~~~~~ 946 (1293)
||...
T Consensus 244 f~~G~ 248 (263)
T COG1127 244 FFNGI 248 (263)
T ss_pred HhcCC
Confidence 77654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=376.69 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=182.6
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEccCCCCC
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~ 792 (1293)
...+|+|||++|++||++||+|+||||||||++++.++..| .+|+|.++|.++.. ...|+.||+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 35799999999999999999999999999999999998764 58999999976532 34578899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
...||.||+.|...+.. .++++.+++|.++++.+||.+.+++++. +|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP~-----qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCch-----hcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999876653 5788888999999999999999988865 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||.|||.+...|+++|+++.++ |.||+++||+++ -+-+.|||+.+|++ |++++.|+..
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEEEeccHH
Confidence 99999999999999999999866 999999999864 35677999999985 9999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=380.49 Aligned_cols=221 Identities=29% Similarity=0.405 Sum_probs=187.2
Q ss_pred ccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCC
Q 000773 713 QGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQND 789 (1293)
Q Consensus 713 ~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~ 789 (1293)
++..|+++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|+++.. ..+.+.++||||..
T Consensus 8 ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~ 85 (258)
T COG1120 8 LSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIASLSPKELAKKLAYVPQSP 85 (258)
T ss_pred EEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchhhcCHHHHhhhEEEeccCC
Confidence 33455678899999999999999999999999999999999997763 47999999998654 45678899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 790 IHSPQVTVKESLIYSAFLRLA--KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
...+.+||+|.+.++...+.. ...+++ ..+.++++++.+|+.+++++.+. .|||||||||.|||||+++|++
T Consensus 86 ~~~~~~tV~d~V~~GR~p~~~~~~~~~~~-D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 86 SAPFGLTVYELVLLGRYPHLGLFGRPSKE-DEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred CCCCCcEEeehHhhcCCcccccccCCCHh-HHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCE
Confidence 999999999999876443211 112333 33468999999999999999876 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC--ChhHHHHHH
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR--NSHKVIEYY 943 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~--~~~~~~~~~ 943 (1293)
|+||||||.||...+.+++++++++++ +|+|||+++||++ ....++|++++|++ |++++.|++.+ ..+.+.+.|
T Consensus 160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~-G~i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKD-GKIVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEeecCcchhcCHHHHHHHh
Confidence 999999999999999999999999985 4999999999987 47788999999985 99999999764 233455555
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=361.03 Aligned_cols=208 Identities=28% Similarity=0.397 Sum_probs=179.7
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEccCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQNDIH 791 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~ 791 (1293)
+++++|+|||++|++||++||+|||||||||||++|.|..+ +.+|+|.++|.++.. ..+++.+||++|++.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 67889999999999999999999999999999999999766 358999999976532 2456789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 792 SPQVTVKESLIYSAFLRLA------KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
.+.+||.+|+..+..-+.+ .-.+++++ ..+-+.|+.+|+.+.+-++.+ +|||||+|||+|||||+++|
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk-~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~p 166 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK-AQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQP 166 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHH-HHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCC
Confidence 9999999999876432211 12334444 557789999999998888776 69999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCC
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRN 935 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~ 935 (1293)
++++.|||+++|||.+++.+|+.|++++++ |.|||++.||.+. ..++|||++-|++ |+++|+||.++.
T Consensus 167 kiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~~el 235 (258)
T COG3638 167 KIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPASEL 235 (258)
T ss_pred CEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCChhhh
Confidence 999999999999999999999999999865 9999999999763 6688999999985 999999998653
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=372.92 Aligned_cols=217 Identities=26% Similarity=0.444 Sum_probs=183.8
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++.. ++.++|+||||++++|++++|+||||||||||+|+|.|..+ +.+|+|.+.|.+.
T Consensus 4 ~i~v~nl~v~y-------------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSY-------------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEE-------------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 35677776654 43369999999999999999999999999999999999776 3589999999887
Q ss_pred ChhcccceEEEEccCCCCC--CCCCHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000773 774 KQETFARISGYCEQNDIHS--PQVTVKESLIYSAFLRL--AKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 774 ~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 849 (1293)
.....+..+|||||...+. .-+||+|.+..+...+. ....++++ .+.++++|+.+|+.+++|+.++ .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 6544456899999965332 24799999987633322 12233344 5679999999999999999988 6999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.+.+|+++.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999997 6889999999995 589999
Q ss_pred CCCCC
Q 000773 930 GPLGR 934 (1293)
Q Consensus 930 g~~~~ 934 (1293)
|++++
T Consensus 220 G~~~~ 224 (254)
T COG1121 220 GPPEE 224 (254)
T ss_pred cChhh
Confidence 99864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=395.11 Aligned_cols=209 Identities=30% Similarity=0.453 Sum_probs=185.3
Q ss_pred ccccccc-ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccC
Q 000773 712 EQGVAED-KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQN 788 (1293)
Q Consensus 712 ~~~~~~~-~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~ 788 (1293)
++.+.++ ++.+|+||||++++||++||+||||||||||+|+|+|...+ .+|+|.++|.+... ...++.+||+||+
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~ 86 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQE 86 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccC
Confidence 4445667 58899999999999999999999999999999999998774 58999999987654 3567789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
+.+++.+||+|+|.|.+.++.... +...++++++++.+||.+..++.++ +||+|||||++||+||+++|++|
T Consensus 87 ~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 87 PSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKVR-----TLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred CCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998876432 3445578999999999986555554 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||||||+||||.++..+++.|++++++| +||+++||+++ ++...||++++|.+ |++++.|+.
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~ 221 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP 221 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 9999999999999999999999999887 89999999986 68888999999985 999999975
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=368.64 Aligned_cols=194 Identities=26% Similarity=0.381 Sum_probs=173.3
Q ss_pred cccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCC
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~l 795 (1293)
.++...+|+|||++|++||+++|+||||||||||||+|+|..++ .+|+|.++|.+... ....+|||+|++.++|.+
T Consensus 12 ~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v~~--p~~~~~~vFQ~~~LlPW~ 87 (248)
T COG1116 12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPVTG--PGPDIGYVFQEDALLPWL 87 (248)
T ss_pred EeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCcccCC--CCCCEEEEeccCcccchh
Confidence 44557899999999999999999999999999999999998774 58999999998732 345689999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
||+||+.++...+. .+++++.+++++.++.+||.+..|+... +|||||||||+|||||+.+|++|+||||++
T Consensus 88 Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 88 TVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYPH-----QLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred hHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCcc-----ccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999999876543 3456666789999999999999998865 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 876 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
.||+.|+..+.+.|.++.+ .++||+++|||.+ |...+.|||++|.+
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~ 206 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSN 206 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecC
Confidence 9999999999999999865 4899999999986 77888999999985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=363.13 Aligned_cols=210 Identities=25% Similarity=0.349 Sum_probs=188.1
Q ss_pred cccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccC
Q 000773 712 EQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQN 788 (1293)
Q Consensus 712 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~ 788 (1293)
++++.|+++.+++|+|++|++||++.++|||||||||+||+|.+..++ .+|+|.+||+++.. ..+|+.+|||-|.
T Consensus 6 nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~~~d~~~LRr~IGYviQq 83 (309)
T COG1125 6 NVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDISDLDPVELRRKIGYVIQQ 83 (309)
T ss_pred eeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence 444566788999999999999999999999999999999999998874 58999999998754 3578899999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES--LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
-.+||++||.||+.+-..+. ..++++.+++++|+++.+||.. +++++.. +|||||+|||.+||||+.+|+
T Consensus 84 igLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----eLSGGQQQRVGv~RALAadP~ 155 (309)
T COG1125 84 IGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPH-----ELSGGQQQRVGVARALAADPP 155 (309)
T ss_pred cccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----hcCcchhhHHHHHHHHhcCCC
Confidence 99999999999998765553 3567777888999999999974 7787754 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|++|||+++|||.++.++++.++++.++ |+|||++|||.+ |.+.+.||+.+|+ +|+++..++++
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P~ 221 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTPD 221 (309)
T ss_pred eEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCHH
Confidence 99999999999999999999999999876 999999999986 7889999999998 58999999875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=348.89 Aligned_cols=210 Identities=26% Similarity=0.380 Sum_probs=188.1
Q ss_pred cccccccccc-cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccC
Q 000773 712 EQGVAEDKLR-LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQN 788 (1293)
Q Consensus 712 ~~~~~~~~~~-iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~ 788 (1293)
++.++|+.+. +++||||+++.||++||+|||||||||+|++|++...| .+|.|.++|.+... ...++.+|.++.+
T Consensus 6 ~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e 83 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGE 83 (245)
T ss_pred ehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCC
Confidence 3444555544 99999999999999999999999999999999998774 58999999987533 3567889999988
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
..++..||++|||.|.+.+.. ....+.+++.+++.+.++|.++.|+.++ ++|.|+||||+|||||+++|+++
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~ 155 (245)
T COG4555 84 RGLYARLTARENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSIL 155 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeE
Confidence 999999999999999988753 4566677889999999999999999988 69999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|||||||||..+.+.+.+.++++.++|++||++||..+ ++..+||++++|.+ |++++.|+.+
T Consensus 156 vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 156 VLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred EEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 999999999999999999999999988999999999975 77789999999985 8999999874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=366.29 Aligned_cols=213 Identities=30% Similarity=0.455 Sum_probs=189.0
Q ss_pred ccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCc---cCCh-hcccceEEEEc
Q 000773 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF---PKKQ-ETFARISGYCE 786 (1293)
Q Consensus 711 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~~v~ 786 (1293)
++.++..+...+++|||++|+.||++|++|||||||||||++|+|..++ ..|.|.+||+ +.+. ....|++|||+
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEE
Confidence 3444556778899999999999999999999999999999999998774 5899999998 5443 23457899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
|+..+|++|||.||+.|+...+ ....++.+.+.+++++|+.+.|++..++++. +|||||||||++||||+.+|+
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~-----QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPA-----QLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred echhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCch-----hcChHHHHHHHHHHHhhcCCC
Confidence 9999999999999999998766 2234456667789999999999999998865 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|+||||+++||..-+..+.+.|+++.++ |.|++++|||+. +..+.+|||++|++ |+|...||++
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 99999999999999999999999999876 999999999986 89999999999985 8999999975
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=356.84 Aligned_cols=193 Identities=29% Similarity=0.437 Sum_probs=167.6
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-------hcccceEEEEccCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-------ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 792 (1293)
..+|++||++|++||+++|+|||||||||||++|.|...+ .+|.|.++|.+... .-+++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998774 58999999976532 12346799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD-AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlD 871 (1293)
|++||+||+.+...+... ...++.++++++++.+||.+..+ +.+. +|||||||||+|||||+.+|++++.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~p~-----eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKKPS-----ELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCCch-----hcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999987655432 22245566889999999997665 5544 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 872 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
|||.+||+.++..|++++++++++ |+|||++|||+ ++...+||++.|.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999866 99999999985 58889999999986 66
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=341.38 Aligned_cols=212 Identities=25% Similarity=0.327 Sum_probs=180.4
Q ss_pred ccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCC---CCCceeEEEEEcCccCCh-----hcccceEEE
Q 000773 713 QGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIRISGFPKKQ-----ETFARISGY 784 (1293)
Q Consensus 713 ~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~---~~~~~~G~i~~~g~~~~~-----~~~~~~~~~ 784 (1293)
+++.|+++++|+|||+.|++++++|+||||||||||||+++.... ++-.++|+|.++|+++.. ..+|+.+|+
T Consensus 13 l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGM 92 (253)
T COG1117 13 LNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGM 92 (253)
T ss_pred eeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHhee
Confidence 334567889999999999999999999999999999999999843 334678999999988643 346788999
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000773 785 CEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVA 863 (1293)
Q Consensus 785 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~aL~~ 863 (1293)
|+|.|..|| +|++||+.|+.++.... + ++..+.|++.|+...|.+ .+|+.-.. ..+|||||+||+||||||+.
T Consensus 93 VFQkPnPFp-~SIydNVayG~r~~g~~--~-~~ldeiVe~sLk~AaLWdEVKDrL~~s--a~~LSGGQQQRLcIARalAv 166 (253)
T COG1117 93 VFQKPNPFP-MSIYDNVAYGLRLHGIK--D-KELDEIVESSLKKAALWDEVKDRLHKS--ALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred eccCCCCCC-chHHHHHHHhHHhhccc--h-HHHHHHHHHHHHHhHhHHHhHHHhhCC--ccCCChhHHHHHHHHHHHhc
Confidence 999999999 99999999987765433 2 556677888898888854 55554333 34799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 864 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 864 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|+||+||||||+|||.+...|-+++.+++ +.-|||++||.+. ...+..|+...+.. |+++++|+++
T Consensus 167 ~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T~ 233 (253)
T COG1117 167 KPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPTD 233 (253)
T ss_pred CCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCHH
Confidence 999999999999999999999999999997 4689999999875 57788999999985 8999999974
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=381.28 Aligned_cols=210 Identities=27% Similarity=0.385 Sum_probs=188.5
Q ss_pred cccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-hcccceEEEEccCCC
Q 000773 712 EQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-ETFARISGYCEQNDI 790 (1293)
Q Consensus 712 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~ 790 (1293)
++.+.+++..+|+|||++++.||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.+. ...+|.+++|+|+..
T Consensus 8 ~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yA 85 (338)
T COG3839 8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYA 85 (338)
T ss_pred eeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCcc
Confidence 33445565459999999999999999999999999999999999876 458999999998765 345688999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 791 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+||+|||+||+.|+...+ ..++++..++|+++.+.+++.+..|+++. +|||||||||+|||||+++|++++|
T Consensus 86 LyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 86 LYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred ccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcc-----cCChhhHHHHHHHHHHhcCCCEEEe
Confidence 999999999999987665 34667778899999999999999999865 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||.|+||+..+..+...|+++.++ |.|+|.+|||. .|...++||+++|. +|++...|++.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~p~ 219 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGTPL 219 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCChH
Confidence 9999999999999999999998876 89999999996 47888999999998 59999999875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=344.79 Aligned_cols=205 Identities=23% Similarity=0.379 Sum_probs=171.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCC----ccccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE----FVPQKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~----~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+|||||||||||++|.|+.+++ +|+|.++|.++.. ...++.+|+|+|+..+||.+||.||+..+.....
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~ 106 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK 106 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc
Confidence 47999999999999999999999998 9999999976542 2246789999999999999999999998754221
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
. ++ ..+.++...++|+.+||.+.+|... .+|||||||||+||
T Consensus 107 ~---------~~------------------------k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIA 148 (240)
T COG1126 107 K---------LS------------------------KAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIA 148 (240)
T ss_pred C---------CC------------------------HHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHH
Confidence 1 11 1122344667899999999888655 56999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEF 236 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~ 236 (1293)
|||+.+|+++++|||||+|||....++++.++++++ .|.|.+++ +|.+..+.+.+|||+.|++|++++.|+++++.
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivV-THEM~FAr~VadrviFmd~G~iie~g~p~~~f-- 224 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIV-THEMGFAREVADRVIFMDQGKIIEEGPPEEFF-- 224 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEE-echhHHHHHhhheEEEeeCCEEEEecCHHHHh--
Confidence 999999999999999999999999999999999997 58999986 56678999999999999999999999988863
Q ss_pred HHhCCCCCCCCCChhhHHHH
Q 000773 237 FESCGFCCPERKGTADFLQE 256 (1293)
Q Consensus 237 f~~~G~~~~~~~~~~~~~~~ 256 (1293)
..|.+....+|+..
T Consensus 225 ------~~p~~~R~~~FL~~ 238 (240)
T COG1126 225 ------DNPKSERTRQFLSK 238 (240)
T ss_pred ------cCCCCHHHHHHHHh
Confidence 34665555666543
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=342.55 Aligned_cols=213 Identities=24% Similarity=0.357 Sum_probs=188.1
Q ss_pred ccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhc----ccceEEEEc
Q 000773 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET----FARISGYCE 786 (1293)
Q Consensus 711 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~----~~~~~~~v~ 786 (1293)
+++.++|++++++++||+++++||++|++|||||||||.+.++.|...+ .+|.|.+||.++.... -+.-+||+|
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCccccc
Confidence 4667788999999999999999999999999999999999999998764 4899999999876532 223589999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
|++..|..|||+||+......+.. .....+++.+.+++++.+++.++++.+.. .||||||||+.|||||+.+|+
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCC
Confidence 999999999999999876655432 22234555668899999999999998755 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
.++||||++|+||.+..+|.++++.+++.|..|++|-|... |....+||..++.+ |++.++|+++
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 99999999999999999999999999999999999999987 78999999999986 8999999975
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=380.80 Aligned_cols=210 Identities=26% Similarity=0.400 Sum_probs=188.2
Q ss_pred ccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCC
Q 000773 713 QGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIH 791 (1293)
Q Consensus 713 ~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~ 791 (1293)
+.+.|++..+|+|||++|++||+++|+|||||||||||++|+|...+ .+|+|.++|+++... ..+|.+|+|+|+..+
T Consensus 11 v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YAL 88 (352)
T COG3842 11 VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDITDVPPEKRPIGMVFQSYAL 88 (352)
T ss_pred eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhhcccceeecCccc
Confidence 34456788899999999999999999999999999999999998774 589999999987653 457889999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000773 792 SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlD 871 (1293)
||+|||+||+.|+..++ ....+++..++++++++.++|.+.+++++. +|||||||||+|||||+.+|++|+||
T Consensus 89 FPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----qLSGGQqQRVALARAL~~~P~vLLLD 161 (352)
T COG3842 89 FPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPH-----QLSGGQQQRVALARALVPEPKVLLLD 161 (352)
T ss_pred CCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChh-----hhChHHHHHHHHHHHhhcCcchhhhc
Confidence 99999999999987633 334556677889999999999999998865 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 872 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
||.|+||..-+.++...|+++.++ |.|.|++|||.. |...+.|||++|.+ |++...|+++
T Consensus 162 EPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gtP~ 222 (352)
T COG3842 162 EPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGTPE 222 (352)
T ss_pred CcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCCHH
Confidence 999999999999999999998765 999999999975 78889999999985 9999999875
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=399.74 Aligned_cols=215 Identities=21% Similarity=0.368 Sum_probs=183.6
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++.+|++.... .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 928 ~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~dI 994 (2272)
T TIGR01257 928 GVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKDI 994 (2272)
T ss_pred eEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 567777765431 0246799999999999999999999999999999999998763 589999999886
Q ss_pred Ch--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000773 774 KQ--ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQ 851 (1293)
Q Consensus 774 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 851 (1293)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.+++++++++.+||.+..|+.++ +|||||
T Consensus 995 ~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGq 1066 (2272)
T TIGR01257 995 ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGM 1066 (2272)
T ss_pred cchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHH
Confidence 43 2345679999999999999999999998766542 2333444568899999999988888765 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCC
Q 000773 852 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931 (1293)
Q Consensus 852 rqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~ 931 (1293)
||||+||+||+.+|++|+|||||+|||+.+++.++++|++++ +|+|||++||+++ ++...+||+++|.+ |+++..|+
T Consensus 1067 KQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs 1143 (2272)
T TIGR01257 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGT 1143 (2272)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999999985 5999999999975 56678999999985 89999998
Q ss_pred C
Q 000773 932 L 932 (1293)
Q Consensus 932 ~ 932 (1293)
.
T Consensus 1144 ~ 1144 (2272)
T TIGR01257 1144 P 1144 (2272)
T ss_pred H
Confidence 5
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=327.76 Aligned_cols=199 Identities=27% Similarity=0.370 Sum_probs=173.6
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------cccceEEEEccCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------TFARISGYCEQNDIHSP 793 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~ 793 (1293)
+.+|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|.++... -.+|.||+|+||..+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 569999999999999999999999999999999999766 3579999999986431 25788999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
+.||.||+.|+.... ..++++.+++|.++|+.+||.+.++.... +|||||+|||+||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPS-----QLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCcc-----ccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 999999999976554 34566777889999999999998877644 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHh-HhheeecCcEEEEeCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELLLLKRGGQVIYSGP 931 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~v~~l~~~G~~~~~g~ 931 (1293)
|.+|||..+..|++++.++.+.|.||++.||+ .++.+... +++.|. +|+++.+..
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd--~~lv~~~~~rvl~l~-~Grl~~d~~ 220 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHD--LELVNRMRHRVLALE-DGRLVRDES 220 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEecc--HHHHHhccCcEEEEe-CCEEEeccc
Confidence 99999999999999999999999999999998 45666555 566665 589887543
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=367.71 Aligned_cols=185 Identities=19% Similarity=0.258 Sum_probs=142.5
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccC--CCCCCCCCHH
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQN--DIHSPQVTVK 798 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~--~~~~~~lTv~ 798 (1293)
.++++++|-+.+++.+|++||||||||||||++.|...+ ..|.|.-.-+. .+++..|+ +.+.-+.++-
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~--------~~~~y~Qh~~e~ldl~~s~l 473 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN--------KLPRYNQHLAEQLDLDKSSL 473 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc--------cchhhhhhhHhhcCcchhHH
Confidence 689999999999999999999999999999999997763 46776543221 23333443 2333456777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000773 799 ESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877 (1293)
Q Consensus 799 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgL 877 (1293)
|++.-. .+. +.+.+.+..++..+||... .+.. .++||+|||+||..|+.++..|.+|+|||||+||
T Consensus 474 e~~~~~----~~~----~~~~e~~r~ilgrfgLtgd~q~~p-----~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 474 EFMMPK----FPD----EKELEEMRSILGRFGLTGDAQVVP-----MSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred HHHHHh----ccc----cchHHHHHHHHHHhCCCccccccc-----hhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 766421 111 1223447789999999844 3443 3489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 878 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 878 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|..+...+-+.|.+. ..+||.++||.. -+-+.++++.+..+++...+.|..
T Consensus 541 Di~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 541 DIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccH
Confidence 999999988888765 468999999976 377788999999887777777763
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=373.81 Aligned_cols=204 Identities=28% Similarity=0.408 Sum_probs=178.8
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ 794 (1293)
++++.+|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||+||++.+++.
T Consensus 17 ~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 94 (306)
T PRK13537 17 YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPD 94 (306)
T ss_pred ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEecccchHHHHhcEEEEeccCcCCCC
Confidence 4456799999999999999999999999999999999998763 57999999988643 2345779999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
+||+||+.+.+..+. .+.++...+++++++.+++.+..++.++ +||||||||++||+||+++|++|+|||||
T Consensus 95 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 95 FTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999998665432 2334444567899999999988888765 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|++
T Consensus 167 ~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~ 222 (306)
T PRK13537 167 TGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAP 222 (306)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999877999999999975 67788999999985 899999986
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=337.26 Aligned_cols=199 Identities=29% Similarity=0.389 Sum_probs=169.4
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCC--CCCCC
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQND--IHSPQ 794 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~--~~~~~ 794 (1293)
++|++|||++.+||++||+|+||||||||.++|+|..++ .+|+|.++|.+.... .+.+.+.+|+||+ .+.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 499999999999999999999999999999999998774 589999999775432 3567899999997 47899
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
.||++.|.-+... ...++.+ +++.++++.+||.+ ..++.. .+||||||||++|||||+.+|++|+||||
T Consensus 99 ~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~P-----~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 99 RTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRRP-----HELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcCc-----hhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 9999988654332 2233333 33889999999965 455543 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
||+||+..+.+|+++|.++.++ |.|.|++|||.+ -+...|||+++|++ |++++.++.+
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-CeEEEeechh
Confidence 9999999999999999999865 889999999976 46778999999985 9999999864
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=331.69 Aligned_cols=210 Identities=25% Similarity=0.415 Sum_probs=191.6
Q ss_pred cccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCC
Q 000773 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQND 789 (1293)
Q Consensus 710 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~ 789 (1293)
++++.++++++.+++|+||+++||++.|++|||||||||++++|.|...+ .+|.|.++|.+.+.. .+.+|||+|.+.
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~~-~~~rIGyLPEER 81 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQE-IKNRIGYLPEER 81 (300)
T ss_pred EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhhh-hhhhcccChhhh
Confidence 44566788999999999999999999999999999999999999998874 589999999988754 355689999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
.++|.+||.|.|.|.|.++ .+++++..+.++.+|+.+++.....+++. .||.|++|++.+..+++++|++++
T Consensus 82 GLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQKIQfisaviHePeLlI 153 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQKIQFISAVIHEPELLI 153 (300)
T ss_pred ccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHHHHHHHHHhcCCCEEE
Confidence 9999999999999999886 46677777889999999999998887765 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||||+|||||.+.+.+.+.+.+++++|.|||+++|+++ .+.++||++++|.+ |+.|.+|+.
T Consensus 154 LDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 154 LDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 99999999999999999999999999999999999986 68899999999985 888999986
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=368.24 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=176.6
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------cccceEEEEccCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------TFARISGYCEQNDIHSP 793 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~ 793 (1293)
+.+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... ..++.+||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 4699999999999999999999999999999999998763 589999999876431 23567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
.+||+||+.+..... ..++++..+++.++++.+||.+..|+.++ +|||||||||+|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~-----~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999999865432 23445555678999999999988887755 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|++||+.++..++++|++++++ |.|||++||+++ .+.+.||++++|++ |++++.|+..
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv~~g~~~ 226 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQGTVS 226 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999875 999999999975 46688999999985 8999999863
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=374.37 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=179.5
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-hcccceEEEEccCCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|++|
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMS 92 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCC
Confidence 34679999999999999999999999999999999999876 358999999987643 123467999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
|+||+.|....+ ..++++..++++++++.+||.+..++.+. +|||||||||+|||||+.+|++|+|||||++
T Consensus 93 v~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 93 VRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPR-----ELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred HHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999875432 23455555678999999999998888765 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 877 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|.+ |+++..|+++
T Consensus 165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~~ 220 (356)
T PRK11650 165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTPV 220 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 9999999999999998775 999999999975 68889999999975 9999999864
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=316.36 Aligned_cols=197 Identities=27% Similarity=0.369 Sum_probs=172.9
Q ss_pred ceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHH
Q 000773 725 EVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVTVKESLIY 803 (1293)
Q Consensus 725 ~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~ 803 (1293)
..+++|++||++||+||||||||||||+|+|...| .+|+|.+||.+.... ...|-+..++|+..+|.++||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 46788999999999999999999999999998764 589999999986543 345668999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000773 804 SAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883 (1293)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~ 883 (1293)
+....+ +.+.++ .++++.++..+||..+.++..+ +|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~L--kL~a~~-r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KLNAEQ-REKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--ccCHHH-HHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 643222 234444 3568999999999999999876 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 884 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 884 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
++..++.+++++ +.|++++||+|+ +.....|+++++++ |+|.+.|+.+
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~~ 215 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccHH
Confidence 999999999865 899999999997 79999999999985 9999999863
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=369.38 Aligned_cols=205 Identities=27% Similarity=0.388 Sum_probs=178.5
Q ss_pred cccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCC
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSP 793 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~ 793 (1293)
+++++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++
T Consensus 50 ~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~ 127 (340)
T PRK13536 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPVPARARLARARIGVVPQFDNLDL 127 (340)
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEECCcchHHHhccEEEEeCCccCCC
Confidence 34556799999999999999999999999999999999998764 48999999987643 234567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
.+||+||+.+.+..+. .+.++..++++++++.++|.+..++.++ +||||||||++||+||+++|++|+||||
T Consensus 128 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEP 199 (340)
T PRK13536 128 EFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEP 199 (340)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999999987654432 2333344567889999999988888766 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|++
T Consensus 200 t~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~ 256 (340)
T PRK13536 200 TTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRP 256 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999878999999999975 67788999999985 899999986
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=372.24 Aligned_cols=205 Identities=26% Similarity=0.393 Sum_probs=180.3
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-hcccceEEEEccCCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-ETFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~l 795 (1293)
++++.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|++... ...++.+|||+|+..++|++
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~ 91 (353)
T TIGR03265 14 FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNL 91 (353)
T ss_pred eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCC
Confidence 345679999999999999999999999999999999999876 358999999987643 22356799999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
||+||+.|+...+ ..++++..++++++++.+||.+..++.+. +|||||||||+|||||+.+|++|+|||||+
T Consensus 92 tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 92 TVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPG-----QLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred cHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999976432 23455566778999999999998888755 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 876 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+++
T Consensus 164 ~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 164 ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999998765 899999999975 67889999999985 8999999864
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=354.65 Aligned_cols=205 Identities=26% Similarity=0.354 Sum_probs=174.5
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEccCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQNDI 790 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~ 790 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~ 87 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA 87 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccChhhHHHHhcceEEEccCcc
Confidence 3445699999999999999999999999999999999998763 47999999987532 224567999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 791 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+++.+||+||+.+...... ..+.++..++++++++.+|+.+..++.++ +|||||||||+||+||+.+|++|+|
T Consensus 88 ~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llll 160 (235)
T cd03261 88 LFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLY 160 (235)
T ss_pred cCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999987643221 12344444567889999999887777655 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|+.
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 9999999999999999999999874 899999999975 56778999999985 899998875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=337.14 Aligned_cols=215 Identities=26% Similarity=0.363 Sum_probs=186.9
Q ss_pred cccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEE
Q 000773 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYC 785 (1293)
Q Consensus 710 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v 785 (1293)
.+++++++|+..+++|||+++++||++||+||||||||||+|+|+|..++ ..|+|.++|+++... ..+.-++..
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RT 84 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIART 84 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceee
Confidence 34566778899999999999999999999999999999999999998774 479999999987542 224457889
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhc--------CCCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHH
Q 000773 786 EQNDIHSPQVTVKESLIYSAFLR--------LAKE-VSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLT 856 (1293)
Q Consensus 786 ~q~~~~~~~lTv~e~l~~~~~~~--------~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ 856 (1293)
+|...+|++|||.||+..++..+ .+.. ...++..+++.++++.+||.+.+|+..+ +||+|||||+.
T Consensus 85 FQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LE 159 (250)
T COG0411 85 FQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLE 159 (250)
T ss_pred cccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHH
Confidence 99999999999999998875533 1111 1234555778899999999999999987 69999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 857 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 857 ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||||+.+|++|+||||.+||.+....++.+.|+++.++ |.||+++.|+.+ -+..++||+++|+. |++++.|+++
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHH
Confidence 999999999999999999999999999999999999875 799999999987 48899999999985 8999999986
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=370.32 Aligned_cols=214 Identities=24% Similarity=0.392 Sum_probs=185.8
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|++.. ++++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 7 l~~~~l~~~-------------~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~ 71 (351)
T PRK11432 7 VVLKNITKR-------------FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDVT 71 (351)
T ss_pred EEEEeEEEE-------------ECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECC
Confidence 566776654 3456699999999999999999999999999999999998763 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000773 775 QE-TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853 (1293)
Q Consensus 775 ~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 853 (1293)
.. ..++.+|||+|+..++|++||+||+.|....+ ..++++..++++++++.+|+.+..++.+. .|||||||
T Consensus 72 ~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~Q 143 (351)
T PRK11432 72 HRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVD-----QISGGQQQ 143 (351)
T ss_pred CCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHH
Confidence 32 23467999999999999999999999986543 23455666778999999999998887755 79999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 854 rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++..++|++++|++ |+++..|++
T Consensus 144 RVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~ 221 (351)
T PRK11432 144 RVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSP 221 (351)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999999765 899999999975 67889999999985 899999986
Q ss_pred C
Q 000773 933 G 933 (1293)
Q Consensus 933 ~ 933 (1293)
+
T Consensus 222 ~ 222 (351)
T PRK11432 222 Q 222 (351)
T ss_pred H
Confidence 4
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=365.51 Aligned_cols=204 Identities=27% Similarity=0.415 Sum_probs=177.5
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ 794 (1293)
++++.+|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 3456799999999999999999999999999999999998763 58999999987643 2345679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
+||+||+.+.+..+. .+.++..++++++++.+|+.+..++.++ +|||||||||+||+||+.+|++|+|||||
T Consensus 81 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 81 LTGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999998765432 2334444568899999999988887765 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999877999999999975 67788999999985 899999885
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=370.18 Aligned_cols=214 Identities=24% Similarity=0.347 Sum_probs=185.1
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCcee--EEEEEcCcc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIE--GDIRISGFP 772 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~--G~i~~~g~~ 772 (1293)
++++|+++.. +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+ |+|.++|.+
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~~ 70 (362)
T TIGR03258 6 IRIDHLRVAY-------------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADRD 70 (362)
T ss_pred EEEEEEEEEE-------------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCEE
Confidence 5666766543 445699999999999999999999999999999999998764 46 999999987
Q ss_pred CCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000773 773 KKQ-ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQ 851 (1293)
Q Consensus 773 ~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 851 (1293)
... ...++.+|||+|+..++|.+||+||+.|....+ ..++++..++++++++.+||.+..++.++ +|||||
T Consensus 71 ~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq 142 (362)
T TIGR03258 71 LTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPA-----QLSGGM 142 (362)
T ss_pred CCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHH
Confidence 643 123567999999999999999999999876433 23455556678999999999998888765 799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 852 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 852 rqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|.+ |+++..
T Consensus 143 ~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~ 220 (362)
T TIGR03258 143 QQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAAH 220 (362)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 99999999999999999999999999999999999999999876 799999999975 67888999999985 899999
Q ss_pred CCCC
Q 000773 930 GPLG 933 (1293)
Q Consensus 930 g~~~ 933 (1293)
|+++
T Consensus 221 g~~~ 224 (362)
T TIGR03258 221 GEPQ 224 (362)
T ss_pred cCHH
Confidence 9864
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=368.94 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=179.1
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~l 795 (1293)
++++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.+||++|++.++|.+
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~ 89 (353)
T PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHM 89 (353)
T ss_pred eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHCCEEEEecCcccCCCC
Confidence 3456799999999999999999999999999999999998763 479999999876432 2346799999999999999
Q ss_pred CHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 796 TVKESLIYSAFLRLA-KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
||+||+.|....... ...+.++..++++++++.++|.+..++.+. +|||||||||+|||||+.+|++|+|||||
T Consensus 90 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalArAL~~~P~llLLDEP~ 164 (353)
T PRK10851 90 TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQKQRVALARALAVEPQILLLDEPF 164 (353)
T ss_pred cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999987543211 123445555678999999999988887755 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 875 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|++ |++++.|+++
T Consensus 165 s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~~ 222 (353)
T PRK10851 165 GALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTPD 222 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999876 899999999975 67888999999985 8999999864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=342.19 Aligned_cols=207 Identities=25% Similarity=0.326 Sum_probs=176.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+.+|+|+||||||||+++|.++..|+ +|+|.++|.++.... .++.+|+++|+..++...||.||+.|..++
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 47899999999999999999999998 999999998876533 357899999999999999999999998876
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+..+ .+.++++.++|+.+||++.+|... .+|||||||||+
T Consensus 111 ag~~k----------------------------------~ei~~RV~elLelVgL~dk~~~yP-----~qLSGGQKQRVa 151 (339)
T COG1135 111 AGVPK----------------------------------AEIKQRVAELLELVGLSDKADRYP-----AQLSGGQKQRVA 151 (339)
T ss_pred cCCCH----------------------------------HHHHHHHHHHHHHcCChhhhccCc-----hhcCcchhhHHH
Confidence 54210 112446788999999998887655 569999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||||+.+|+||++|||||+|||.+...|+++|+++.++.|.||++++ |-++.+.+.|||+.+|++|++++.|+..++.
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlIT-HEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT-HEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEe-chHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999999999999999964 5578889999999999999999999998873
Q ss_pred HHHHhCCCCCCCCCChhhHHHHhc
Q 000773 235 EFFESCGFCCPERKGTADFLQEVT 258 (1293)
Q Consensus 235 ~~f~~~G~~~~~~~~~~~~~~~~~ 258 (1293)
..|++.-..+|+.+..
T Consensus 231 --------~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 231 --------ANPKHAITQEFIGETL 246 (339)
T ss_pred --------cCcchHHHHHHHHhhc
Confidence 3455555555555443
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=329.16 Aligned_cols=210 Identities=26% Similarity=0.393 Sum_probs=177.9
Q ss_pred ccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEc
Q 000773 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCE 786 (1293)
Q Consensus 711 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~ 786 (1293)
++++..|++.++|++||+++++||+++|+||||||||||||+|+|..++ .+|+|.++|.++.. ...++-++|||
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~Gi~~VP 84 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARLGIAYVP 84 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence 4455567889999999999999999999999999999999999998763 47999999998754 23456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE-LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
|...+||.|||+|||..++..+... +......+++.+.+- |.+.+++..| .|||||||.++|||||+.+|
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~~----~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred ccccchhhCcHHHHHhhhhhccccc----ccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCC
Confidence 9999999999999999876554321 111112567777775 5666777766 69999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
++|+|||||.||-|.-..+|.+.|++++++ |.||+++.+... ...+.+||..+|.+ |++++.|+.+
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~ 222 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAA 222 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHH
Confidence 999999999999999999999999999976 779999999865 46788999999985 9999999965
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=345.40 Aligned_cols=202 Identities=29% Similarity=0.437 Sum_probs=171.0
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~l 795 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~ 87 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHL 87 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCC
Confidence 344579999999999999999999999999999999999866 3579999999876431 2345799999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
|++||+.+..... ....++..++++++++.+|+.+..++.+. .||||||||++||+||+.+|++|+|||||+
T Consensus 88 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 88 TVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764322 12233334567889999999887777654 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 876 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 160 ALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999998764 899999999975 56788999999985 8887654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=364.02 Aligned_cols=205 Identities=23% Similarity=0.304 Sum_probs=179.4
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---cc----cceEEEEccCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---TF----ARISGYCEQND 789 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~~v~q~~ 789 (1293)
++.+.+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.++... .. ++.+|||+|++
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 4567799999999999999999999999999999999998763 589999999886531 22 56799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
.++|.+||+||+.+..... ..++++..+++.++++.+||.+..++.++ .|||||||||+|||||+.+|++|+
T Consensus 81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999875442 23455556678999999999888887765 699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||||++||+.++..+.+.++++.++ |+|||++||+++ ++...+|++++|.+ |+++..|+++
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 99999999999999999999999765 899999999975 57788999999975 8999999864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=342.17 Aligned_cols=214 Identities=24% Similarity=0.371 Sum_probs=185.4
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.+++++|..+. +..+|+++|+++++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 467777776531 25799999999999999999999999999999999998774 4799999998854
Q ss_pred ----hhcccceEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000773 775 ----QETFARISGYCEQNDIH-SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 775 ----~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 849 (1293)
....++.+|||+|++.. +-.-||.|.+.|+.... ..+.++..++++++++.+|+.+.+++.+. .|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~-----~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPF-----NLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCcc-----ccCC
Confidence 34567889999999743 45679999999976432 34566778889999999999999888754 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEE
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIY 928 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~ 928 (1293)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |+|||++|||.+ .+...+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999887 789999999975 57788999999985 89999
Q ss_pred eCCC
Q 000773 929 SGPL 932 (1293)
Q Consensus 929 ~g~~ 932 (1293)
+|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=344.72 Aligned_cols=200 Identities=27% Similarity=0.409 Sum_probs=172.1
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKE 799 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 799 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 5699999999999999999999999999999999998653 47999999987642 3567999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000773 800 SLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879 (1293)
Q Consensus 800 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~ 879 (1293)
|+.+....+. ...++..+.++++++.+|+.+..++.++ +||||||||++||+||+.+|++++|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988654321 2233334567899999999887777654 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeec-CcEEEEeCCC
Q 000773 880 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPL 932 (1293)
Q Consensus 880 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-~G~~~~~g~~ 932 (1293)
.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ +|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999975 56778999999984 4899988775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=316.43 Aligned_cols=227 Identities=26% Similarity=0.400 Sum_probs=186.4
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++.+|++|++ .++++|++||++++|||++||+||||||||||||.|+|...+ .+|++.+||.+..
T Consensus 2 i~a~nls~~~-------------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSL-------------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEe-------------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 3556777766 357899999999999999999999999999999999998764 4799999999875
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000773 775 Q---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQ 851 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 851 (1293)
. ....+.-+.+||+..+-...||+|-+.++........ ...+..+.++++++..++.+++.+... .|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~-~~~e~~~i~~~ala~~d~~~la~R~y~-----~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGLAGRDYR-----TLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCC-CchhhHHHHHHHHHHcChhhhhccchh-----hcCchH
Confidence 4 2345667899999998888899999998754322212 222344557899999999998877654 799999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 852 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 852 rqrv~ia~aL~~------~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
||||.+||.|++ ++++||||||||.||...+..++++.|+++++|..|+++.||.+. ...++|++++|.+ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 456999999999999999999999999999999999999999884 6778999999975 99
Q ss_pred EEEeCCCCC--ChhHHHHHHH
Q 000773 926 VIYSGPLGR--NSHKVIEYYE 944 (1293)
Q Consensus 926 ~~~~g~~~~--~~~~~~~~~~ 944 (1293)
++..|++.+ ..+.+...|.
T Consensus 219 v~a~g~p~~vlt~Etl~~vyg 239 (259)
T COG4559 219 VIASGSPQDVLTDETLERVYG 239 (259)
T ss_pred EeecCCHHHhcCHHHHHHHhC
Confidence 999999864 2334444553
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=367.18 Aligned_cols=214 Identities=22% Similarity=0.325 Sum_probs=185.0
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 15 L~l~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i~ 79 (375)
T PRK09452 15 VELRGISKSF-------------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDIT 79 (375)
T ss_pred EEEEEEEEEE-------------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 6677776543 345699999999999999999999999999999999998763 5899999998764
Q ss_pred h-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000773 775 Q-ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853 (1293)
Q Consensus 775 ~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 853 (1293)
. ...++.+||++|++.++|.+||+||+.|+...+ ..+..+..++++++++.+||.+..++.+. +|||||||
T Consensus 80 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~Q 151 (375)
T PRK09452 80 HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQ 151 (375)
T ss_pred CCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHH
Confidence 3 223567999999999999999999999875432 23445555678999999999998888765 79999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 854 rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|.+ |+++..|++
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~ 229 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGTP 229 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999999865 999999999975 67889999999985 999999986
Q ss_pred C
Q 000773 933 G 933 (1293)
Q Consensus 933 ~ 933 (1293)
.
T Consensus 230 ~ 230 (375)
T PRK09452 230 R 230 (375)
T ss_pred H
Confidence 3
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=343.33 Aligned_cols=194 Identities=26% Similarity=0.329 Sum_probs=166.2
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------cccceEEEEccCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------TFARISGYCEQNDIHSP 793 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~ 793 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... .+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 4599999999999999999999999999999999998663 479999999875321 23567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
.+||+||+.+....+. ...++..++++++++.+|+.+..++.++ +||||||||++||+||+.+|++|+||||
T Consensus 94 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988654321 2233344567899999999887777654 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
|+|||+.++..+.+.|++++++|+|||++||+++ .+...+|++++|.+ |+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999975 56678899999975 65
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=360.64 Aligned_cols=204 Identities=27% Similarity=0.391 Sum_probs=175.2
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ 794 (1293)
++++.+|+||||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.
T Consensus 14 ~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (303)
T TIGR01288 14 YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPE 91 (303)
T ss_pred eCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcccHHHHhhcEEEEeccccCCcC
Confidence 3456799999999999999999999999999999999998763 47999999987532 2245679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
+||+||+.+.+.... .+.++...+++++++.+++.+..++.++ +||||||||++||+||+.+|++|+|||||
T Consensus 92 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 92 FTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999986543321 2333334557789999999888787765 69999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 164 ~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 219 (303)
T TIGR01288 164 TGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP 219 (303)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999878999999999975 57788999999985 899999885
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=341.81 Aligned_cols=200 Identities=26% Similarity=0.439 Sum_probs=171.0
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
+++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|++.+++.+|+
T Consensus 11 ~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv 87 (210)
T cd03269 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKV 87 (210)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcH
Confidence 34569999999999999999999999999999999999865 358999999987643 345679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000773 798 KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgL 877 (1293)
+||+.+....+. ....+..+.++++++.+|+.+..++.+. +||||||||++||++|+.+|++++|||||+||
T Consensus 88 ~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 88 IDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred HHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 999987654331 2233344567899999999887776654 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 878 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 878 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
|+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 160 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 160 DPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 999999999999998877899999999975 56678999999985 8887654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=327.85 Aligned_cols=194 Identities=26% Similarity=0.377 Sum_probs=170.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++++|||||||||+||+|.++++|+ +|+|.+||+++.+.. .++.+|||-|+..+||++||.||+.+...+.+.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 47899999999999999999999998 999999999987654 468899999999999999999999987665432
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
. .. +.+++++++|+.+||+.. ...++++++|||||+|||.+||
T Consensus 106 ~--------------------k~--------------~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 106 D--------------------KE--------------RIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred C--------------------HH--------------HHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHH
Confidence 1 11 123457889999999741 1234566789999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
||+.+|++++||||+++|||.++..+.+.++++.++-++|||++ +|+.+|+++++|||++|++|+++..+++++++.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV-THDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV-THDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE-ecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999899999996 678899999999999999999999999999864
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=344.40 Aligned_cols=204 Identities=27% Similarity=0.366 Sum_probs=173.9
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ 794 (1293)
++++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (220)
T cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87 (220)
T ss_pred ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcChHHHhhcEEEecCCcccccc
Confidence 3456799999999999999999999999999999999998653 48999999976532 2334679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
+||+||+.+....+. ...++...+++++++.+|+.+..++.++ .||||||||++||+||+.+|++++|||||
T Consensus 88 ~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 88 LTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999988654321 2233344567899999999887777655 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 875 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |+++..|++
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999876 899999999975 56778999999975 899988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=343.29 Aligned_cols=196 Identities=31% Similarity=0.427 Sum_probs=167.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc---cceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP---QKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||||+|+|.++|. +|+|.++|+++.+... .+.++||||.+...+.+||+|.+.+|..-..
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~- 105 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL- 105 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc-
Confidence 58999999999999999999999988 9999999999876543 4679999999888889999999998753210
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
.... .+.+ +.++.++..|+.+|+.+.+++.+.+ |||||||||.|||
T Consensus 106 -------~~~~-------~~~~---------------~D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iAr 151 (258)
T COG1120 106 -------GLFG-------RPSK---------------EDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIAR 151 (258)
T ss_pred -------cccc-------CCCH---------------hHHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHHH
Confidence 0000 0001 1123577789999999999998865 9999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
||+++|++++||||||+||...+.++++.++++++++|+|+|+++| +.+.+.++||++++|++|+++.+|++++++.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlH-DlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH-DLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEec-CHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 9999999999999999999999999999999999888999999865 5578999999999999999999999988753
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=365.62 Aligned_cols=215 Identities=23% Similarity=0.370 Sum_probs=184.9
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|++... +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF-------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 36677776543 345699999999999999999999999999999999998763 479999999876
Q ss_pred Ch-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000773 774 KQ-ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852 (1293)
Q Consensus 774 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 852 (1293)
.. ...++.+||++|++.++|++||.||+.|....+ ..++++..++++++++.+++.+..++.+. +||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHH
Confidence 43 234577999999999999999999999875433 23455556678999999999988887755 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCC
Q 000773 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931 (1293)
Q Consensus 853 qrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~ 931 (1293)
|||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|.+ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998654 899999999975 67889999999985 89999998
Q ss_pred CC
Q 000773 932 LG 933 (1293)
Q Consensus 932 ~~ 933 (1293)
++
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 64
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=341.26 Aligned_cols=201 Identities=27% Similarity=0.398 Sum_probs=171.2
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lT 796 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (213)
T cd03301 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMT 88 (213)
T ss_pred CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCcccceEEEEecChhhccCCC
Confidence 445699999999999999999999999999999999998653 579999999876432 22457999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
++||+.+....+ ....++..++++++++.+|+.+..++.++ .||||||||++||+||+.+|++++|||||+|
T Consensus 89 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 89 VYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998764332 12334444567889999999887777654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 877 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 9999999999999999864 899999999975 56778999999975 8888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=310.78 Aligned_cols=191 Identities=25% Similarity=0.383 Sum_probs=167.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
++||+||||||||||||+|+|...|. +|+|.+||++.+... .++-+++++|++.+|..+||.+|+.+|..--.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--- 100 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--- 100 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc---
Confidence 48999999999999999999999998 999999999876543 46779999999999999999999988754110
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
++. .+.++.++.++...||..+.++..+. |||||||||+|||+|
T Consensus 101 ------kL~-------------------------a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARcl 144 (231)
T COG3840 101 ------KLN-------------------------AEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCL 144 (231)
T ss_pred ------ccC-------------------------HHHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHH
Confidence 000 11234467789999999988887765 999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+-+|++||||+|+|||.-+.++..++.+++++++.|+++++||| +++.+.+|+++++++|+|.++|+.++..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999999999999998887 4788999999999999999999988864
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=358.32 Aligned_cols=204 Identities=24% Similarity=0.389 Sum_probs=177.2
Q ss_pred cccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCC
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSP 793 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~ 793 (1293)
+++++.+|+|+||++++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++
T Consensus 11 ~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~ 88 (301)
T TIGR03522 11 LYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYL 88 (301)
T ss_pred EECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCC
Confidence 3445679999999999999999999999999999999999876 358999999987643 234567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
.+||.||+.+.+.++. .+.++..++++++++.+|+.+..++.++ .||||||||++||+||+++|++|+||||
T Consensus 89 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 89 DMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999998765432 2334444567899999999988887765 6999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|+|||+.++..+++.|+++++ ++|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 161 t~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 161 TTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred cccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999865 799999999975 67888999999985 899999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=366.96 Aligned_cols=208 Identities=28% Similarity=0.365 Sum_probs=177.4
Q ss_pred cccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCC
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~ 792 (1293)
+++++.+|+|+||++++||+++|+||||||||||||+|+|..++ .+|+|.++|.+... ...++.+||++|++.++
T Consensus 12 ~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~ 89 (402)
T PRK09536 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDVEALSARAASRRVASVPQDTSLS 89 (402)
T ss_pred EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEcCcCCHHHHhcceEEEccCCCCC
Confidence 34567799999999999999999999999999999999998763 58999999987643 34567799999999999
Q ss_pred CCCCHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 793 PQVTVKESLIYSAFLRL--AKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+.+||+||+.+...... ..... ++..++++++++.+|+.+..++.+. +||||||||++|||||+++|++|+|
T Consensus 90 ~~~tv~e~v~~~~~~~~~~~~~~~-~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgGerQRv~IArAL~~~P~iLLL 163 (402)
T PRK09536 90 FEFDVRQVVEMGRTPHRSRFDTWT-ETDRAAVERAMERTGVAQFADRPVT-----SLSGGERQRVLLARALAQATPVLLL 163 (402)
T ss_pred CCCCHHHHHHhccchhcccccCCC-HHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999987532111 01112 2334568899999999988887755 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
||||+|||+.++..++++|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+++
T Consensus 164 DEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~ 224 (402)
T PRK09536 164 DEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPA 224 (402)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999999877999999999976 57788999999985 8999999865
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=346.57 Aligned_cols=206 Identities=27% Similarity=0.389 Sum_probs=172.8
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lT 796 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++.+|
T Consensus 13 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t 90 (239)
T cd03296 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMT 90 (239)
T ss_pred CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCcCCccccceEEEecCCcccCCCC
Confidence 345699999999999999999999999999999999998653 579999999875432 22456999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 797 VKESLIYSAFLRLA-KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 797 v~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
|+||+.+....+.. .....++..++++++++.+|+.+..++.++ +||||||||++||+||+.+|++|+|||||+
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP~~ 165 (239)
T cd03296 91 VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARALAVEPKVLLLDEPFG 165 (239)
T ss_pred HHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999876433211 001223334557889999999877777654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 876 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 221 (239)
T cd03296 166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTP 221 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence 99999999999999999875 899999999975 56788999999975 899998875
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=365.60 Aligned_cols=205 Identities=26% Similarity=0.365 Sum_probs=177.3
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~l 795 (1293)
++++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 13 ~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~ 90 (369)
T PRK11000 13 YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHL 90 (369)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCCCCHhHCCEEEEeCCcccCCCC
Confidence 3445699999999999999999999999999999999998763 479999999876431 2346799999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
||+||+.|....+ ..+.++..++++++++.+|+.+..++.+. +|||||||||+|||||+.+|++|+|||||+
T Consensus 91 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 91 SVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999875432 12344445678999999999988887765 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 876 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|.+ |+++..|+++
T Consensus 163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~~ 219 (369)
T PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999998765 899999999975 67788999999985 8999999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=345.99 Aligned_cols=207 Identities=28% Similarity=0.388 Sum_probs=173.5
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---c-ccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---T-FARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.++
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~ 87 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLF 87 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccc
Confidence 344569999999999999999999999999999999999865 3479999999876431 1 234689999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 793 PQVTVKESLIYSAFLRLAKE-------VSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
+.+||+||+.+......... ...++....++++++.+|+.+..++.++ .|||||||||+||+||+.+|
T Consensus 88 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p 162 (236)
T cd03219 88 PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG-----ELSYGQQRRLEIARALATDP 162 (236)
T ss_pred cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh-----hCCHHHHHHHHHHHHHhcCC
Confidence 99999999988654321110 0123334567899999999887777654 79999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 163 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 163 KLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 999999999999999999999999999877999999999975 56778999999985 899988875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=341.56 Aligned_cols=198 Identities=30% Similarity=0.488 Sum_probs=170.7
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCCCCHH
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQVTVK 798 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~ 798 (1293)
.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 699999999999999999999999999999999998653 47999999987643 23456799999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000773 799 ESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878 (1293)
Q Consensus 799 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD 878 (1293)
||+.+....+ ....++...+++++++.+|+.+..++.++ .||||||||++||+||+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 9998765432 12334445567899999999887777655 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 879 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 879 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999777999999999975 57778999999985 8887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=361.42 Aligned_cols=202 Identities=24% Similarity=0.327 Sum_probs=174.6
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------cccceEEEEccCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------TFARISGYCEQNDIHSP 793 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~ 793 (1293)
+.+|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.++... ..++.+||++|++.+++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 5699999999999999999999999999999999998763 579999999876421 23567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
.+||+||+.+..... ..+.++..++++++++.+|+.+..++.+. +|||||||||+|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~iLlLDEP 167 (343)
T PRK11153 96 SRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999998875432 12344444568899999999888777654 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|+|||+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.+
T Consensus 168 ts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~~ 226 (343)
T PRK11153 168 TSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTVS 226 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999765 899999999975 56778999999985 8999998753
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=344.18 Aligned_cols=205 Identities=25% Similarity=0.368 Sum_probs=174.0
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---c-ccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---T-FARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (232)
T cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMHKRARLGIGYLPQEASIF 87 (232)
T ss_pred eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccCCHhHHHhccEEEecCCcccc
Confidence 3455799999999999999999999999999999999998663 479999999875321 1 234689999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+||+||+.+....+. ...++...+++++++.+|+.+..++.+. .||||||||++||+||+.+|++|+|||
T Consensus 88 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 88 RKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999987643321 2233344567899999999887777654 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++..|+.+
T Consensus 160 Pt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 218 (232)
T cd03218 160 PFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPE 218 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHH
Confidence 99999999999999999999877999999999975 67888999999975 8999888753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=343.25 Aligned_cols=206 Identities=25% Similarity=0.294 Sum_probs=171.4
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCC-----CCCceeEEEEEcCccCCh-----hcccceEEEEc
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK-----TGGYIEGDIRISGFPKKQ-----ETFARISGYCE 786 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~-----~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~ 786 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.+... ...++.++|++
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~ 87 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVF 87 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEe
Confidence 34557999999999999999999999999999999999976 4 458999999987532 23456799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
|++.++ .+||+||+.+....+. ....++..++++++++.+|+.+..++... +.+||||||||++||+||+.+|+
T Consensus 88 q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~ 161 (227)
T cd03260 88 QKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPE 161 (227)
T ss_pred cCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCC
Confidence 999888 8999999987654321 11222234567889999999876665431 24799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|+|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++|.+ |++++.|+.+
T Consensus 162 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 225 (227)
T cd03260 162 VLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPTE 225 (227)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCcc
Confidence 99999999999999999999999999876 99999999975 56778999999985 8999988753
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=338.80 Aligned_cols=197 Identities=29% Similarity=0.430 Sum_probs=168.8
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-hcccceEEEEccCCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 11 ~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (208)
T cd03268 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLT 88 (208)
T ss_pred CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCc
Confidence 34579999999999999999999999999999999999865 358999999987543 233467999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
|+||+.+....+. .. .++++++++.+++.+..++.++ .|||||||||+||++|+.+|++++|||||+|
T Consensus 89 v~e~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 89 ARENLRLLARLLG---IR----KKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred HHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 9999987654321 11 2346789999999887777655 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 877 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999998877899999999975 56678999999985 8888754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=338.74 Aligned_cols=196 Identities=30% Similarity=0.399 Sum_probs=164.6
Q ss_pred cccc-cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCC-CCC
Q 000773 716 AEDK-LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDI-HSP 793 (1293)
Q Consensus 716 ~~~~-~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~-~~~ 793 (1293)
.+++ +.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.++|++|++. .+.
T Consensus 8 ~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 85 (205)
T cd03226 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85 (205)
T ss_pred EeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhh
Confidence 3344 679999999999999999999999999999999999866 358999999987644344567999999974 345
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
.+|++||+.+..... . .+ ..+++++++.+|+.+..++.++ .||||||||++|||||+.+|++|+||||
T Consensus 86 ~~tv~e~l~~~~~~~---~--~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP 153 (205)
T cd03226 86 TDSVREELLLGLKEL---D--AG--NEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEP 153 (205)
T ss_pred hccHHHHHhhhhhhc---C--cc--HHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 679999998754321 1 11 1347889999999887777654 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEE
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~ 927 (1293)
|+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 154 TSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 9999999999999999999777999999999975 56678999999985 7764
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=350.20 Aligned_cols=211 Identities=22% Similarity=0.284 Sum_probs=178.8
Q ss_pred cccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---c----ccceE
Q 000773 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---T----FARIS 782 (1293)
Q Consensus 710 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~ 782 (1293)
.+++.+.++++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.+
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcE
Confidence 34566677888899999999999999999999999999999999998763 479999999875421 1 13569
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 000773 783 GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELV 862 (1293)
Q Consensus 783 ~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~ 862 (1293)
+|++|++.+++.+||+||+.+..... .....+..++++++++.+|+.+..++.++ +||||||||++||+||+
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~ 176 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALA 176 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHh
Confidence 99999999999999999998865332 12233344567889999999887777765 79999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 863 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 863 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 177 ~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 177 VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999998754 899999999975 56778999999975 899988875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=341.28 Aligned_cols=193 Identities=30% Similarity=0.431 Sum_probs=164.5
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------c-ccceEEEEccCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------T-FARISGYCEQNDIHS 792 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~-~~~~~~~v~q~~~~~ 792 (1293)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 569999999999999999999999999999999999876 3579999999875421 1 245799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+||+||+.+....+. ....+..++++++++.+|+.+..++.++ .||||||||++||+||+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcChh-----hcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998654331 2233334567899999999887777654 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 873 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
||+|||+.++..+.+.|+++++ +|+|||++||+++ ++ +.+|++++|.+ |+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999987 5899999999975 34 48999999975 65
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=350.85 Aligned_cols=192 Identities=27% Similarity=0.392 Sum_probs=171.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-QKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++++..+ +|.+++|+|+..++|.+||+||+.|+.+.++...
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k 107 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPK 107 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCch
Confidence 36899999999999999999999998 9999999999998654 5789999999999999999999999988754210
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.+.+++++++.+.|+|++..|++.. +|||||||||+|||||
T Consensus 108 ----------------------------------~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQRVAlaRAl 148 (338)
T COG3839 108 ----------------------------------AEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQRVALARAL 148 (338)
T ss_pred ----------------------------------HHHHHHHHHHHHHcCChhHHhcCcc-----cCChhhHHHHHHHHHH
Confidence 1123457888999999999988764 5999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
+.+|++++||||+|.||+..+..+...|+++.++.+.|+|.+ +|+..|+..++|||++|++|++...|++.++.+
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYV-THDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYV-THDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEE-cCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999999999999999999999999999988888899986 566779999999999999999999999999843
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=337.71 Aligned_cols=221 Identities=37% Similarity=0.630 Sum_probs=179.4
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC-CceeEEEEEcCccC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFPK 773 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~-~~~~G~i~~~g~~~ 773 (1293)
+.|+|+++..... .+.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 3567776654311 0136799999999999999999999999999999999997651 13579999999876
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 000773 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEE-VMDLVELESLKDAIVGLPGVTGLSIEQR 852 (1293)
Q Consensus 774 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~~~~~~~~~~lSgGer 852 (1293)
.....++.++|++|++.+++.+||+||+.+............+....++++ .++.+++.+..++.++ .||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK-----GISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccccc-----CcCHHHH
Confidence 544456779999999999999999999998654332221122222233455 8899999877766544 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 853 qrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.+|++++|.+ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998877899999999975468899999999985 8988765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=333.64 Aligned_cols=194 Identities=26% Similarity=0.429 Sum_probs=166.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCc---ccCCc-cccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGY---RLNEF-VPQKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~---~~~~~-~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
++|++|||||||||||++|+|+..|+ +|.|.+||+ +.++. ...+.+|||+|+..+|+.|||.|||.||.+.+.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 47999999999999999999999998 999999999 55542 234789999999999999999999999987652
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
. + + ++ .+.+..++++|+.++|++..++ ++.+|||||||||+||
T Consensus 107 ~--~---p-------------~~--------------~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALA 149 (345)
T COG1118 107 E--R---P-------------SE--------------AEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALA 149 (345)
T ss_pred c--C---C-------------Ch--------------hhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHH
Confidence 1 0 0 00 1224457788999999886664 5567999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|||+..|++|+||||+++||++.+.++-++|+++.++.|.|++++ +|+..|+++++|||++|++|+|...|++.|+.+
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfV-THD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFV-THDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEE-eCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999999999988778888886 567789999999999999999999999999843
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=345.34 Aligned_cols=205 Identities=27% Similarity=0.363 Sum_probs=170.6
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEccCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQNDIHSP 793 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~ 793 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 5799999999999999999999999999999999998653 47999999987542 123567999999999999
Q ss_pred CCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 794 QVTVKESLIYSAFLRL-----AKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
.+||+||+.+...... ......++..+++.++++.+++.+..++.+. +|||||||||+||+||+.+|++|
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD-----QLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc-----cCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999986532110 0011112233557889999999877666544 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|+.+
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCHH
Confidence 999999999999999999999999764 899999999976 56678999999985 8999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=306.12 Aligned_cols=200 Identities=27% Similarity=0.395 Sum_probs=176.4
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKES 800 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 800 (1293)
.+|+|+|++|.+||.++++||||||||||||+++|..++ ..|+|.+||+++....- .-|.|+|++.++|.+||.||
T Consensus 19 ~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~dN 94 (259)
T COG4525 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVIDN 94 (259)
T ss_pred hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCCc--cceeEeccCccchhhHHHHH
Confidence 499999999999999999999999999999999998774 57999999998754322 23899999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000773 801 LIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880 (1293)
Q Consensus 801 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~ 880 (1293)
+.|+..++ ...+.++.+++.+.+..+||.+..++.+- +|||||||||.|||||+.+|++|+||||++.||.-
T Consensus 95 vafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~ 166 (259)
T COG4525 95 VAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166 (259)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceE-----eecchHHHHHHHHHHhhcCcceEeecCchhhHHHH
Confidence 99998876 46678888889999999999998887765 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeec-CcEEEEeCCCC
Q 000773 881 AAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPLG 933 (1293)
Q Consensus 881 ~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-~G~~~~~g~~~ 933 (1293)
++++++++|-++.+ .|+.++++||+.+ |..-.++++++|+. .|+|+..-+++
T Consensus 167 tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 167 TREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999988765 4999999999976 55567899999974 36888776654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=342.00 Aligned_cols=200 Identities=27% Similarity=0.347 Sum_probs=171.8
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------cccceEEEEccCCCCCCC
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------TFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~~ 794 (1293)
.+|+++||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 799999999999999999999999999999999998763 579999999875421 234679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
+|++||+.+....+. ....+....++++++.+|+.+..++.+. .||||||||++||+||+.+|++++|||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYPA-----QLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999987654321 2333344567899999999887777654 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 875 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999775 899999999975 56678999999975 899988874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=333.27 Aligned_cols=193 Identities=28% Similarity=0.425 Sum_probs=162.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccc---cccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQN---DVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~---~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+|+|+|+++|. +|+|.++|.+......+.++|||||. |+-|| +||+|.+..+...+.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~- 106 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKK- 106 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccc-
Confidence 58999999999999999999999988 99999999887766556789999995 44454 599999988632211
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
...+.. . .+.++.+++.|+.+|+.+.+|+.+|+ |||||+|||.|||
T Consensus 107 -g~~~~~-------------~---------------~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lAR 152 (254)
T COG1121 107 -GWFRRL-------------N---------------KKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLAR 152 (254)
T ss_pred -cccccc-------------c---------------HHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHH
Confidence 001000 0 01134578899999999999999997 9999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
||+++|++|+|||||+|+|+.++..+.++|+++.++ |+||+++ ||+...+.++||+|++| ++++++.|+++++.+
T Consensus 153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~v-tHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMV-THDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 999999999999999999999999999999999886 9999996 77788999999999999 667899999988754
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=339.04 Aligned_cols=200 Identities=26% Similarity=0.420 Sum_probs=171.4
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCCCCH
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 569999999999999999999999999999999999865 358999999987642 2345679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000773 798 KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgL 877 (1293)
+||+.+....+. ...++..++++++++.+++.+..++.++ .||||||||++||+||+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999987654331 2233334567899999999887777654 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 878 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 878 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|.+ |++++.|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999876 599999999975 46678999999975 899988875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=342.07 Aligned_cols=204 Identities=23% Similarity=0.360 Sum_probs=173.3
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-----hcccceEEEEccCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-----ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~ 792 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 89 (240)
T PRK09493 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLF 89 (240)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccC
Confidence 34569999999999999999999999999999999999865 357999999987642 23356799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+||+||+.+...... ....++..+++.++++.+|+.+..++.+. .||||||||++||+||+.+|++++|||
T Consensus 90 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 90 PHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPS-----ELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred CCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChh-----hcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999987542111 12334444567899999999877776654 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (240)
T PRK09493 163 PTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDP 220 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCH
Confidence 99999999999999999999877999999999975 56678999999985 899998875
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=338.41 Aligned_cols=216 Identities=24% Similarity=0.348 Sum_probs=176.4
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++..... ...+.+|+++||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~ 74 (233)
T PRK11629 6 LQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMS 74 (233)
T ss_pred EEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcC
Confidence 6777777654210 001469999999999999999999999999999999999865 35899999998764
Q ss_pred hhc------c-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000773 775 QET------F-ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGL 847 (1293)
Q Consensus 775 ~~~------~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 847 (1293)
... . ++.++|++|++.+++.+|++||+.+..... ....++..++++++++.+|+.+..++.+. +|
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 146 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPS-----EL 146 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hC
Confidence 311 1 256999999999999999999998864332 12233444568899999999887776654 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcEE
Q 000773 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926 (1293)
Q Consensus 848 SgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~ 926 (1293)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ....+|++++|. +|++
T Consensus 147 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G~i 223 (233)
T PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DGRL 223 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CCEE
Confidence 99999999999999999999999999999999999999999999875 5899999999974 345578998887 4899
Q ss_pred EEeCCC
Q 000773 927 IYSGPL 932 (1293)
Q Consensus 927 ~~~g~~ 932 (1293)
+..++.
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 988774
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=342.30 Aligned_cols=202 Identities=28% Similarity=0.385 Sum_probs=171.7
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+.++|++|++.+++.+||
T Consensus 12 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv 87 (255)
T PRK11248 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNV 87 (255)
T ss_pred CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcH
Confidence 345699999999999999999999999999999999998653 47999999987643 23458999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000773 798 KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgL 877 (1293)
+||+.+....+ .....+...++.++++.+|+.+..++.+. .||||||||++||+||+.+|++|+|||||+||
T Consensus 88 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 88 QDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred HHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 99998764322 12333444568899999999877776544 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeec-CcEEEEeCCC
Q 000773 878 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGQVIYSGPL 932 (1293)
Q Consensus 878 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-~G~~~~~g~~ 932 (1293)
|+.++..+.+.|+++++ +|+|||++||+++ ++...+|++++|.+ +|+++..++.
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999854 5899999999975 57788999999974 5899887765
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=350.02 Aligned_cols=195 Identities=32% Similarity=0.487 Sum_probs=169.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCC--ccccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE--FVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~--~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++++||||||||||+|+|+|+++|+ +|+|.++|.+... ...++.+||+||++.+++.+||+|++.|.+.+++..
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 57999999999999999999999997 9999999988765 344678999999999999999999999998876532
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
.. ..++.++++++.+||.+..+++++ +||+|||||++||+|
T Consensus 110 ~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kqrl~ia~a 150 (293)
T COG1131 110 KE----------------------------------EAEERIEELLELFGLEDKANKKVR-----TLSGGMKQRLSIALA 150 (293)
T ss_pred hh----------------------------------HHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHHHHHHHHH
Confidence 10 012346789999999985566665 599999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHHHH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~f~ 238 (1293)
|+++|+++||||||+|||+.++.++++.|++++++.++||++++ |..+++.++||+|++|++|++++.|+.+++...+.
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvliss-H~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLST-HILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeC-CcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 99999999999999999999999999999999986558999975 45678999999999999999999999998876544
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=345.15 Aligned_cols=206 Identities=24% Similarity=0.310 Sum_probs=170.6
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEccCCCCC
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~ 792 (1293)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45699999999999999999999999999999999998763 57999999987532 12356799999999999
Q ss_pred CCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 793 PQVTVKESLIYSAFLRL-----AKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~-----~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
+.+||+||+.+...... ......++..+++.++++.+|+.+..++.+. .|||||||||+||+||+.+|++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD-----QLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999976421100 0001122334567889999999877776544 7999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|.+ |++++.|+.+
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 9999999999999999999999998764 899999999975 56678999999985 8999888753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=343.25 Aligned_cols=204 Identities=27% Similarity=0.395 Sum_probs=172.1
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-----------hcccceEEEEc
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-----------ETFARISGYCE 786 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----------~~~~~~~~~v~ 786 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 91 (250)
T PRK11264 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVF 91 (250)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccccccchhhHHHHhhhhEEEEe
Confidence 345699999999999999999999999999999999998653 47999999986532 12345799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
|++.+++.+||+||+.+...... ....++..++++++++.+|+.+..++.++ +||||||||++||+||+.+|+
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~Gq~qrv~la~al~~~p~ 164 (250)
T PRK11264 92 QNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPR-----RLSGGQQQRVAIARALAMRPE 164 (250)
T ss_pred cCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChh-----hCChHHHHHHHHHHHHhcCCC
Confidence 99999999999999987532111 12333444567889999999877766544 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 165 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 228 (250)
T PRK11264 165 VILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA 228 (250)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999877999999999975 56678999999985 899998874
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=336.49 Aligned_cols=194 Identities=28% Similarity=0.359 Sum_probs=165.6
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------cccceEEEEccCCCCC
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------TFARISGYCEQNDIHS 792 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~ 792 (1293)
++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... .+++.++|++|++.++
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35699999999999999999999999999999999998653 579999999876421 2356799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+||+||+.+....+. ...++..++++++++.+++.+..++.+. .||||||||++||+||+.+|++|+|||
T Consensus 92 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~lllLDE 163 (214)
T TIGR02673 92 PDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFPE-----QLSGGEQQRVAIARAIVNSPPLLLADE 163 (214)
T ss_pred cCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 99999999988654321 2233334567899999999877666654 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G 213 (214)
T TIGR02673 164 PTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD-G 213 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC-C
Confidence 99999999999999999998777999999999975 56778999999975 5
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=352.04 Aligned_cols=207 Identities=28% Similarity=0.404 Sum_probs=179.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-QKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++++|||||||||||++|+|+..|+ +|+|.++|++++...+ +|.+++|+|+..+||.|||.||+.|+.+.+....
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~ 109 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK 109 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC
Confidence 47899999999999999999999998 9999999999988655 5789999999999999999999999987432110
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
+ .+.+++++++|+.++|++..++++ .+|||||||||+|||||
T Consensus 110 -------------------~--------------~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARAL 151 (352)
T COG3842 110 -------------------K--------------AEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARAL 151 (352)
T ss_pred -------------------H--------------HHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHHh
Confidence 0 012345788999999998777655 56999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHHHHh
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFES 239 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~f~~ 239 (1293)
+.+|++|+||||.|+||..-+.++..-|+++.++.|.|.|++ +|+..|+..++|||++|++|+|...|+++++
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~V-THDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei------ 224 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-THDQEEALAMSDRIAVMNDGRIEQVGTPEEI------ 224 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEE-ECCHHHHhhhccceEEccCCceeecCCHHHH------
Confidence 999999999999999999999999999999999899999996 5667899999999999999999999999998
Q ss_pred CCCCCCCCCChhhHHHHh
Q 000773 240 CGFCCPERKGTADFLQEV 257 (1293)
Q Consensus 240 ~G~~~~~~~~~~~~~~~~ 257 (1293)
|..|...-.|+|+.+.
T Consensus 225 --Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 225 --YERPATRFVADFIGES 240 (352)
T ss_pred --hhCcchHHHHHHhCcc
Confidence 4456666677777654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=317.41 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=169.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
|++|+|||||||||||++|.|+.+|+ +|+|.+||.++.... +++.+||++|++.+.+.+||.+|+..+..-
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 58999999999999999999999987 999999998765432 356799999999999999999999987543
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
+. + ......+.++..+ +..+-..|+.+|+.+.+.++.++ |||||+|||+
T Consensus 109 ~~--s---------~~~slfglfsk~d---------------k~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVa 157 (258)
T COG3638 109 YT--S---------TWRSLFGLFSKED---------------KAQALDALERVGILDKAYQRAST-----LSGGQQQRVA 157 (258)
T ss_pred cc--h---------HHHHHhCCCCHHH---------------HHHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHH
Confidence 21 1 1122223333322 22344578999999988888876 9999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||||+++|++++.|||+++|||.+++.+++.|++++++.|.|+|+++|+ .+-+.++||||+-|++|+++|+||++++.
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Riigl~~G~ivfDg~~~el~ 236 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPASELT 236 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhheEecCCcEEEeCChhhhh
Confidence 99999999999999999999999999999999999999999999999766 57888999999999999999999998875
Q ss_pred HH
Q 000773 235 EF 236 (1293)
Q Consensus 235 ~~ 236 (1293)
+.
T Consensus 237 ~~ 238 (258)
T COG3638 237 DE 238 (258)
T ss_pred HH
Confidence 43
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=326.08 Aligned_cols=177 Identities=26% Similarity=0.373 Sum_probs=154.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+||||||||||||+|+|+.+|+ +|+|.++|.+++ .+...++||+|++.++|-+||+||+.++.+..+...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~- 104 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSK- 104 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccccch-
Confidence 47999999999999999999999998 999999999883 345678999999999999999999999987654110
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
.+.+..+++.|+.+||.+..|. ++++|||||||||+|||||+
T Consensus 105 ---------------------------------~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 105 ---------------------------------AEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred ---------------------------------HhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHh
Confidence 0112246778999999887765 45679999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCC
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEG 222 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G 222 (1293)
.+|++|+||||+++||+.|+..+.+.|.++.++.++|++++ +|+.+|+..++|||++|.++
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllV-THdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLV-THDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999988889999996 56778999999999999984
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=348.31 Aligned_cols=218 Identities=22% Similarity=0.344 Sum_probs=178.2
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++..... ....+.+|+||||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 5677777654210 00124699999999999999999999999999999999998763 5899999998764
Q ss_pred h-----hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000773 775 Q-----ETFARISGYCEQNDI-HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE--SLKDAIVGLPGVTG 846 (1293)
Q Consensus 775 ~-----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~~~~~~~~ 846 (1293)
. ...++.+||++|++. .+...||+||+.+..... ..++++..++++++++.+||. +..++.+. .
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~-----~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPF-----E 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcc-----c
Confidence 3 134567999999963 334579999998764332 234555556788999999996 55666544 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 847 lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...+|++++|.+ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999865 899999999975 56678999999985 89
Q ss_pred EEEeCCC
Q 000773 926 VIYSGPL 932 (1293)
Q Consensus 926 ~~~~g~~ 932 (1293)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999985
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=338.46 Aligned_cols=202 Identities=28% Similarity=0.439 Sum_probs=168.7
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---c-ccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---T-FARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+|+||++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.++|++|++.++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIF 87 (222)
T ss_pred cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcCeEEeccccccC
Confidence 3445799999999999999999999999999999999998763 579999999875421 1 245699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV-ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlD 871 (1293)
+.+|++||+.+...... ..+....+.++++.+ ++.+..++.+. .||||||||++|||||+.+|++|+||
T Consensus 88 ~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllD 157 (222)
T cd03224 88 PELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAG-----TLSGGEQQMLAIARALMSRPKLLLLD 157 (222)
T ss_pred CCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999999987653321 112233456778877 46666666544 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 872 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||+|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 999999999999999999999877899999999975 56788999999975 899988874
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=340.77 Aligned_cols=201 Identities=27% Similarity=0.394 Sum_probs=171.5
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 5699999999999999999999999999999999998663 47999999987532 233567899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES--LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~--~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
|+||+.+....+ ....++..+.+.++++.+|+.+ ..++.+. +|||||||||+||+||+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPH-----ELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 999998765432 1233344456789999999985 5566543 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 875 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999865 899999999975 56788999999985 899988875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=345.18 Aligned_cols=214 Identities=19% Similarity=0.278 Sum_probs=178.3
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 8 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (269)
T PRK11831 8 VDMRGVSFTR-------------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENIP 72 (269)
T ss_pred EEEeCeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5667766543 345699999999999999999999999999999999998763 5799999998754
Q ss_pred hh------cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000773 775 QE------TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLS 848 (1293)
Q Consensus 775 ~~------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lS 848 (1293)
.. ..++.++|++|++.+++.+||.||+.+...... ....++...++.++++.+|+.+..++.++ .||
T Consensus 73 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS 145 (269)
T PRK11831 73 AMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----ELS 145 (269)
T ss_pred ccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 21 134569999999999999999999987543211 12233334557889999999887777654 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEE
Q 000773 849 IEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927 (1293)
Q Consensus 849 gGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~ 927 (1293)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 146 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~ 223 (269)
T PRK11831 146 GGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKIV 223 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999975 57778999999975 8999
Q ss_pred EeCCC
Q 000773 928 YSGPL 932 (1293)
Q Consensus 928 ~~g~~ 932 (1293)
+.|+.
T Consensus 224 ~~g~~ 228 (269)
T PRK11831 224 AHGSA 228 (269)
T ss_pred EeCCH
Confidence 98875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=335.31 Aligned_cols=194 Identities=26% Similarity=0.355 Sum_probs=165.8
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEccCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQNDIHSP 793 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~~~~~ 793 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999865 357999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
.+|++||+.+....+. ...++..++++++++.+|+.+..++.++ +||||||||++||+||+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654321 2333444567899999999887776654 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
|+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.+ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999975 56667899999975 65
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=336.02 Aligned_cols=205 Identities=28% Similarity=0.449 Sum_probs=166.1
Q ss_pred cccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCC-
Q 000773 714 GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS- 792 (1293)
Q Consensus 714 ~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~- 792 (1293)
+++++++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ..++.++|++|++.+.
T Consensus 6 ~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~ 81 (213)
T cd03235 6 TVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDR 81 (213)
T ss_pred eeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEecccccccc
Confidence 3344456799999999999999999999999999999999998653 4799999998653 2456799999998764
Q ss_pred -CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 793 -PQVTVKESLIYSAFLRLA-KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 793 -~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+.+||+||+.+....... .....++..++++++++.+++.+..++.++ .||||||||++||+||+.+|++|+|
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llll 156 (213)
T cd03235 82 DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARALVQDPDLLLL 156 (213)
T ss_pred CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 348999999875322110 001112233467899999999877776654 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ | +++.|
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 157 DEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999999999877899999999975 56678999999964 5 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=333.75 Aligned_cols=199 Identities=34% Similarity=0.508 Sum_probs=168.4
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~l 795 (1293)
+++.+|+|+||++++| +++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 87 (211)
T cd03264 11 GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNF 87 (211)
T ss_pred CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccccchHHHHhheEEecCCCcccccC
Confidence 3456999999999999 9999999999999999999998663 58999999987543 23456799999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
||+||+.+....+. ...++..+.++++++.+|+.+..++.++ .||||||||++||+||+.+|++++|||||+
T Consensus 88 tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 88 TVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987654331 2233334567889999999887776654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 876 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|.+ |++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999976 599999999975 46678999999985 8887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=309.88 Aligned_cols=191 Identities=27% Similarity=0.330 Sum_probs=169.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc--ccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV--PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+|||||||||+|++|++++.|+ +|+|++||.+..... .++.+|.++.+..++..||++|||.|.+++.+.
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l- 105 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGL- 105 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhh-
Confidence 58999999999999999999999998 999999998875433 467899999888899999999999998876432
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
.+.+.+.+.+++.+.|+|.++.|+.+|+ +|-|+||||+||||
T Consensus 106 ---------------------------------~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARA 147 (245)
T COG4555 106 ---------------------------------SRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARA 147 (245)
T ss_pred ---------------------------------hhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHH
Confidence 1122345577889999999999999987 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|+++|++++|||||||||..+...+.+.++++.. .|+++|.+ +|.++|+..+||||++|++|++++.|+.+++..
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFS-SH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFS-SHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEe-cccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999999999854 69999998 667899999999999999999999999988754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=335.01 Aligned_cols=197 Identities=25% Similarity=0.364 Sum_probs=167.0
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-----hcccceEEEEccCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-----ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~ 792 (1293)
+++.+|+++||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.++
T Consensus 11 ~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (213)
T cd03262 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF 88 (213)
T ss_pred CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccchhHHHHHhcceEEecccccC
Confidence 345699999999999999999999999999999999998653 47999999987631 23456799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+|++||+.+...... ....++..++++++++.+|+.+..++.+. +||||||||++||+||+.+|++|+|||
T Consensus 89 ~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDE 161 (213)
T cd03262 89 PHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPA-----QLSGGQQQRVAIARALAMNPKVMLFDE 161 (213)
T ss_pred CCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCcc-----ccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999987542111 12333444567889999999887777654 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+
T Consensus 162 P~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 162 PTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999877899999999975 56778999999985 65
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=334.40 Aligned_cols=193 Identities=27% Similarity=0.406 Sum_probs=162.7
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDI-HSPQV 795 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 795 (1293)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 579999999999999999999999999999999999865 357999999987542 234567999999975 46789
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
|++||+.+..... .....+....++++++.+|+.+..++.++ .||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPF-----TLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764322 12233334457889999999877776654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 876 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED-G 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-C
Confidence 99999999999999999877999999999975 56667999999975 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=340.13 Aligned_cols=205 Identities=26% Similarity=0.376 Sum_probs=173.3
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIF 90 (241)
T ss_pred eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCccc
Confidence 344579999999999999999999999999999999999865 347999999987542 11345799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+||+||+.+....+. ....++...+++++++.+|+.+..++.++ .||||||||++||+||+.+|++|+|||
T Consensus 91 ~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDE 163 (241)
T PRK10895 91 RRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQ-----SLSGGERRRVEIARALAANPKFILLDE 163 (241)
T ss_pred ccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999987543221 12233444567899999999877666544 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||+|||+.++..+.+.+++++++|+|||+++|+++ ++...+|++++|.+ |++++.|+.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 221 (241)
T PRK10895 164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTP 221 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCH
Confidence 99999999999999999998877999999999975 57788999999975 899998875
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=344.15 Aligned_cols=214 Identities=25% Similarity=0.347 Sum_probs=178.1
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++..+ +++.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 56777765442 134699999999999999999999999999999999998763 5799999998764
Q ss_pred h---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 775 Q---ETFARISGYCEQNDI-HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
. ...++.+||++|++. .++..||.||+.|..... ....++..++++++++.+|+.+..++.+. .||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG 142 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSYG 142 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCHH
Confidence 3 223567999999963 455689999998764321 23344444567899999999888777655 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|++ |++++.|
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 220 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEG 220 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999975 46678999999975 8999998
Q ss_pred CC
Q 000773 931 PL 932 (1293)
Q Consensus 931 ~~ 932 (1293)
++
T Consensus 221 ~~ 222 (274)
T PRK13647 221 DK 222 (274)
T ss_pred CH
Confidence 85
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=295.72 Aligned_cols=198 Identities=27% Similarity=0.388 Sum_probs=171.8
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---h----cccceEEEEccCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---E----TFARISGYCEQNDI 790 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~----~~~~~~~~v~q~~~ 790 (1293)
+...||++|++.|++||-+||+|||||||||||-+++|...+ .+|+|.+.|++... + -+.+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 456799999999999999999999999999999999998764 58999999988642 1 13467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 791 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+.|+||..||+...+.++.... .+....+.+.++.+||.+..+.+.+ +|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~HyP~-----qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHYPA-----QLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccCcc-----ccCchHHHHHHHHHHhcCCCCEEec
Confidence 9999999999998887765322 2333457789999999988777755 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEE
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIY 928 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~ 928 (1293)
||||-+||..+..+|.+++-.+.++ |.|.+++||||. +...|||.+-|.. |+++.
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 9999999999999999999888754 999999999974 7889999999975 88764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=317.58 Aligned_cols=194 Identities=27% Similarity=0.416 Sum_probs=164.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||||+|.|+++|+ +|+|.++|.++.... .++++|+++|+-.+|..+||+||+.|..+-
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 47999999999999999999999998 999999999875432 346799999999999999999999986542
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
... +|+..+ ++.+...|+..||... +++.++.+||||++||++
T Consensus 113 ~~~-------------------lp~~~i--------------~~lv~~KL~~VGL~~~----~~~~~PsELSGGM~KRva 155 (263)
T COG1127 113 HTK-------------------LPESLI--------------RELVLMKLELVGLRGA----AADLYPSELSGGMRKRVA 155 (263)
T ss_pred hcc-------------------CCHHHH--------------HHHHHHHHHhcCCChh----hhhhCchhhcchHHHHHH
Confidence 211 122222 2345566889999754 233456679999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||||++.+|+++++||||+||||.++..+-++|+++.+.-|.|++++ +|+.++++..|||+++|.+|+|+..|+++++.
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~V-THDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV-THDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEE-ECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999889999996 56678999999999999999999999999986
Q ss_pred H
Q 000773 235 E 235 (1293)
Q Consensus 235 ~ 235 (1293)
+
T Consensus 235 ~ 235 (263)
T COG1127 235 A 235 (263)
T ss_pred h
Confidence 4
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=334.15 Aligned_cols=197 Identities=27% Similarity=0.321 Sum_probs=167.0
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---h---cccceEEEEccCCCCC
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---E---TFARISGYCEQNDIHS 792 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~---~~~~~~~~v~q~~~~~ 792 (1293)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. . .+++.++|++|++.++
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 3569999999999999999999999999999999999876 358999999987532 1 1356799999999988
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+|++||+.+....+ ....++....++++++.+++.+..++.+. .||||||||++||+||+.+|++|+|||
T Consensus 92 ~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDE 163 (222)
T PRK10908 92 MDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPI-----QLSGGEQQRVGIARAVVNKPAVLLADE 163 (222)
T ss_pred ccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999998765332 12333434457889999999877776544 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEE
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~ 927 (1293)
||+|||+.++..+.+.|++++++|.|||++||+++ ++...+|++++|.+ |+++
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 164 PTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999777899999999975 56677899999985 7764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=336.10 Aligned_cols=199 Identities=24% Similarity=0.317 Sum_probs=163.7
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEccCC--CCC
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQND--IHS 792 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~--~~~ 792 (1293)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 69999999999999999999999999999999999865 357999999987643 23456799999998 467
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIF-VEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+.+||+||+.+....... ...++.... ++++++.+++. +..++.++ .||||||||++|||||+.+|++|+|
T Consensus 97 ~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllL 169 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPH-----ELSGGQRQRVAIARALALNPKLLIA 169 (228)
T ss_pred CcCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCch-----hcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 789999999876433221 111222122 35788999995 45566544 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |+++..|
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 9999999999999999999999876 899999999975 56668999999985 8887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=339.85 Aligned_cols=205 Identities=22% Similarity=0.276 Sum_probs=173.8
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 13 l~i~~l~~~~-------------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 77 (257)
T PRK11247 13 LLLNAVSKRY-------------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPLA 77 (257)
T ss_pred EEEEEEEEEE-------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEHH
Confidence 6777877644 345699999999999999999999999999999999998663 4799999987653
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000773 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKR 854 (1293)
Q Consensus 775 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 854 (1293)
..++.++|++|++.+++.+||+||+.+... . . ...+++++++.+|+.+..++.+. .||||||||
T Consensus 78 --~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~--~--~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqr 141 (257)
T PRK11247 78 --EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G--Q--WRDAALQALAAVGLADRANEWPA-----ALSGGQKQR 141 (257)
T ss_pred --HhhCceEEEecCccCCCCCcHHHHHHhccc-----c--h--HHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHH
Confidence 245679999999999999999999987421 0 1 12346789999999887776654 799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 855 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 855 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+.+|++++|.+ |++++.|+.
T Consensus 142 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 9999999999999999999999999999999999999865 4899999999975 56778999999985 899888764
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=336.29 Aligned_cols=202 Identities=30% Similarity=0.467 Sum_probs=170.3
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh--cccceEEEEccCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE--TFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~--~~~~~~~~v~q~~~~~~~l 795 (1293)
+++.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ...+.++|++|++.+++.+
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~ 89 (236)
T TIGR03864 12 GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDL 89 (236)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcccCChhhhhhEEEeCCCCCCcccC
Confidence 345699999999999999999999999999999999998663 479999999875321 2234689999999988999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
|++||+.+....+ ....++....++++++.+|+.+..++.++ .||||||||++|||||+.+|++++|||||+
T Consensus 90 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 90 SVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred cHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998765432 12333344567889999999887777654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 876 GLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||+.++..+.+.|+++++ +|+|||++||+++ ++ ..+|++++|.+ |++++.|+.
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCCH
Confidence 9999999999999999975 5899999999976 34 45999999975 899988874
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=353.86 Aligned_cols=207 Identities=22% Similarity=0.274 Sum_probs=176.8
Q ss_pred ccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---c----ccceEEEEcc
Q 000773 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---T----FARISGYCEQ 787 (1293)
Q Consensus 715 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~~v~q 787 (1293)
..++...+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... . .++.+||++|
T Consensus 36 ~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q 113 (400)
T PRK10070 36 EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQ 113 (400)
T ss_pred hhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEEC
Confidence 345566789999999999999999999999999999999998763 479999999876421 1 2356999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 788 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
++.+++.+||+||+.+....+. ...++..++++++++.+||.+..++.+. +|||||||||+|||||+.+|++
T Consensus 114 ~~~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~~-----~LSgGq~QRv~LArAL~~~P~i 185 (400)
T PRK10070 114 SFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYPD-----ELSGGMRQRVGLARALAINPDI 185 (400)
T ss_pred CCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999998754431 2334444568899999999888777654 7999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ |+++..|+++
T Consensus 186 LLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999999999999875 4899999999975 56788999999985 8999988753
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=346.30 Aligned_cols=217 Identities=25% Similarity=0.329 Sum_probs=177.6
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++...... ...+++|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 56778776652110 0124699999999999999999999999999999999998763 4799999998763
Q ss_pred h-------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000773 775 Q-------ETFARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGV 844 (1293)
Q Consensus 775 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 844 (1293)
. ...++.+|||+|++ .++ ..||+||+.|..... ..+.++..++++++++.+||. +..++.+.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPF---- 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcc----
Confidence 1 23456799999986 344 579999998864322 234444445688999999996 55666544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|.+
T Consensus 145 -~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~- 221 (290)
T PRK13634 145 -ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK- 221 (290)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 79999999999999999999999999999999999999999999999765 899999999975 57788999999975
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|++++.|++
T Consensus 222 G~i~~~g~~ 230 (290)
T PRK13634 222 GTVFLQGTP 230 (290)
T ss_pred CEEEEECCH
Confidence 899999985
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=347.08 Aligned_cols=219 Identities=23% Similarity=0.331 Sum_probs=178.3
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++..+... .....+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 56778877653110 0123599999999999999999999999999999999998764 4799999876531
Q ss_pred ---------------------------hhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 000773 775 ---------------------------QETFARISGYCEQND-IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVM 826 (1293)
Q Consensus 775 ---------------------------~~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l 826 (1293)
....++.+|||+|++ ..+...||+||+.|..... ..+.++..+++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123456799999985 3344579999998865432 234555556789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000773 827 DLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 905 (1293)
Q Consensus 827 ~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 905 (1293)
+.+||. +..++.+. .|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~~~-----~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSPF-----ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 56776654 799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 906 PSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 906 ~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
++ .+.+.+|++++|.+ |++++.|+++
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 75 57788999999975 8999999863
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=339.90 Aligned_cols=214 Identities=21% Similarity=0.276 Sum_probs=176.9
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (257)
T PRK10619 6 LNVIDLHKRY-------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTIN 70 (257)
T ss_pred EEEeeeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcc
Confidence 5666766543 345699999999999999999999999999999999998763 4799999997653
Q ss_pred h----------------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-cc
Q 000773 775 Q----------------ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK-DA 837 (1293)
Q Consensus 775 ~----------------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~ 837 (1293)
. ..+++.++|++|++.+++.+||+||+.+...... .....+...++.++++.+|+.+.. ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 148 (257)
T PRK10619 71 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK 148 (257)
T ss_pred cccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 1 1235679999999999999999999987532111 123334445678999999997653 54
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHh
Q 000773 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 917 (1293)
Q Consensus 838 ~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 917 (1293)
.+ .+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++
T Consensus 149 ~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i 222 (257)
T PRK10619 149 YP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 222 (257)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 43 479999999999999999999999999999999999999999999999877999999999975 566679999
Q ss_pred heeecCcEEEEeCCC
Q 000773 918 LLLKRGGQVIYSGPL 932 (1293)
Q Consensus 918 ~~l~~~G~~~~~g~~ 932 (1293)
++|.+ |++++.|+.
T Consensus 223 ~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 223 IFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899998875
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=308.67 Aligned_cols=215 Identities=25% Similarity=0.413 Sum_probs=187.8
Q ss_pred cccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEc
Q 000773 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCE 786 (1293)
Q Consensus 710 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~ 786 (1293)
+++++++++++.+|+++|.++++|.+++|+|||||||||||.+++++.+ ..+|+|.++|.++.. ..+.+.+..+-
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILk 81 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILK 81 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999999999765 358999999998643 34567788899
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
|+..+...+||+|-+.|+.........+.++ ...+++.++.++|+++.|+... +||||||||.-||+.++++.+
T Consensus 82 Q~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD-~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 82 QENHINSRLTVRDLVGFGRFPYSQGRLTKED-RRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred hhchhhheeEHHHHhhcCCCcccCCCCchHH-HHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCc
Confidence 9999999999999999875543333344444 4568999999999999999876 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~ 934 (1293)
.++||||.++||...+.++|+.||+++++ |+||+++.||.+. ...+.|+++.|++ |+++..|++++
T Consensus 156 yvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 156 YVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred EEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 99999999999999999999999999987 9999999999874 5567899999985 99999999864
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=346.47 Aligned_cols=230 Identities=20% Similarity=0.221 Sum_probs=182.7
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
-++.+|++................+...+|+||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 467888876653211000000011235699999999999999999999999999999999998763 479999999876
Q ss_pred Chh------cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000773 774 KQE------TFARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGV 844 (1293)
Q Consensus 774 ~~~------~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 844 (1293)
... .+++.++||+|++ .++|.+||.||+.+...... ...++++..++++++++.+|+. +..++.+.
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~---- 160 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPH---- 160 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCcc----
Confidence 421 2356799999997 58899999999987643321 1234555566788999999994 45566544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
+|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++ |.|+|++||+++ .+.+.+|++++|.+
T Consensus 161 -~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 161 -EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 79999999999999999999999999999999999999999999999765 899999999975 46678999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|++++.|+.+
T Consensus 238 G~ive~g~~~ 247 (331)
T PRK15079 238 GHAVELGTYD 247 (331)
T ss_pred CEEEEEcCHH
Confidence 8999999853
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=337.94 Aligned_cols=204 Identities=25% Similarity=0.312 Sum_probs=170.0
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCccCCh-----hcccceEEEEccCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFPKKQ-----ETFARISGYCEQND 789 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~ 789 (1293)
+++.+++|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+... ...++.++|++|++
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 91 (247)
T TIGR00972 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP 91 (247)
T ss_pred CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCc
Confidence 3456999999999999999999999999999999999976532 127999999987642 23456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
.+++ +|++||+.+....+. ....++..+.++++++.+|+. +..++.+ ..||||||||++|||||+.+|
T Consensus 92 ~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p 163 (247)
T TIGR00972 92 NPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA-----LGLSGGQQQRLCIARALAVEP 163 (247)
T ss_pred ccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc-----ccCCHHHHHHHHHHHHHhcCC
Confidence 8888 999999988654321 122334445678899999997 5555544 479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 164 ~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 164 EVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999876 489999999975 56778999999985 899998875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=342.05 Aligned_cols=218 Identities=26% Similarity=0.356 Sum_probs=178.1
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++..... ....+.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 4677777765310 00123599999999999999999999999999999999998763 5899999998763
Q ss_pred h-------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000773 775 Q-------ETFARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGV 844 (1293)
Q Consensus 775 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 844 (1293)
. ...++.+|||+|++ .+++ .||.||+.|..... ..+.++...++.++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP----- 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----
Confidence 1 23456799999986 4554 69999999865332 234455556788999999996 4556554
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 479999999999999999999999999999999999999999999999877999999999975 56688999999985 8
Q ss_pred EEEEeCCCC
Q 000773 925 QVIYSGPLG 933 (1293)
Q Consensus 925 ~~~~~g~~~ 933 (1293)
++++.|+++
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 999999863
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=332.22 Aligned_cols=200 Identities=24% Similarity=0.397 Sum_probs=171.6
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|+
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~ 87 (223)
T TIGR03740 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTA 87 (223)
T ss_pred CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCH
Confidence 34569999999999999999999999999999999999865 35899999998764322 2468999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000773 798 KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgL 877 (1293)
+||+.+....+. ... .++.++++.+|+.+..++.++ .||||||||++||+|++.+|++|+|||||+||
T Consensus 88 ~~~~~~~~~~~~---~~~----~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 88 RENLKVHTTLLG---LPD----SRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred HHHHHHHHHHcC---CCH----HHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 999987654321 121 246788999999887777654 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC
Q 000773 878 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934 (1293)
Q Consensus 878 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~ 934 (1293)
|+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|++..
T Consensus 156 D~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 156 DPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence 999999999999999877999999999975 56788999999975 89999998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=337.39 Aligned_cols=203 Identities=26% Similarity=0.363 Sum_probs=171.3
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC---------hhcccceEEEEccC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---------QETFARISGYCEQN 788 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~---------~~~~~~~~~~v~q~ 788 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ....++.++|++|+
T Consensus 13 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecccccccchhhHHHHHhheEEEecC
Confidence 345699999999999999999999999999999999998763 5799999998642 01234578999999
Q ss_pred CCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 789 DIHSPQVTVKESLIYSA-FLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
+.+++.+||.||+.+.. ... ....++...++.++++.+|+.+..++.+. .||||||||++|||||+.+|++
T Consensus 91 ~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 91 YNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPL-----HLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred ccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999997532 221 12233334567899999999877777654 7999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 225 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDA 225 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999877999999999975 56678999999985 899998875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=344.16 Aligned_cols=202 Identities=24% Similarity=0.310 Sum_probs=170.5
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-------hcccceEEEEccCCC-C
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-------ETFARISGYCEQNDI-H 791 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~-~ 791 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 4699999999999999999999999999999999998763 58999999987532 123457999999973 2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 792 SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+..+||.||+.+..... ....++..++++++++.+||. +..++.++ .||||||||++||+||+.+|++|+|
T Consensus 98 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~qrl~laral~~~p~lLlL 169 (287)
T PRK13641 98 LFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF-----ELSGGQMRRVAIAGVMAYEPEILCL 169 (287)
T ss_pred hccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33589999998764332 223445556688999999996 56677655 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
||||+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|.+ |++++.|+.+
T Consensus 170 DEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 230 (287)
T PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPK 230 (287)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999877999999999975 56788999999985 8999988853
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=331.80 Aligned_cols=195 Identities=26% Similarity=0.379 Sum_probs=164.0
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---c---cc-ceEEEEccCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---T---FA-RISGYCEQNDIHS 792 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~---~~-~~~~~v~q~~~~~ 792 (1293)
+.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... . ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 4699999999999999999999999999999999998663 589999999875321 1 12 5699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+||+||+.+....+. ....+..+++.++++.+|+.+..++.++ .||||||||++|||+|+.+|++|+|||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRPS-----ELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 99999999987643321 2223334567889999999877777654 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEE
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~ 927 (1293)
||+|||+.++..+.+.|++++++ |+|||++||+++ ..+.+|++++|.+ |+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~--~~~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE--LAKKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEEEeC-CEec
Confidence 99999999999999999999764 899999999975 3455899999985 7764
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=344.52 Aligned_cols=219 Identities=23% Similarity=0.366 Sum_probs=178.9
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+... ...+.+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 478899887653110 0124599999999999999999999999999999999998763 479999999765
Q ss_pred Ch-------------------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000773 774 KQ-------------------ETFARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832 (1293)
Q Consensus 774 ~~-------------------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 832 (1293)
.. ...++.+|||+|++ .+++ .||+||+.+..... ..+.++..++++++++.+|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999987 4555 59999998864321 234444456788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000773 833 -SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 911 (1293)
Q Consensus 833 -~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 911 (1293)
+..++.+ .+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 4566544 379999999999999999999999999999999999999999999999877999999999965 466
Q ss_pred HHHhHhheeecCcEEEEeCCCC
Q 000773 912 EAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 912 ~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+.+|++++|.+ |+++..|+++
T Consensus 241 ~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCHH
Confidence 88999999985 8999999863
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=321.21 Aligned_cols=180 Identities=28% Similarity=0.410 Sum_probs=153.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-------ccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-------PQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+|||||||||||++|.|+..|+ +|.|.++|.++.... .++.+|||+|+..++|++||+||+.....
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 48999999999999999999999997 999999998876433 23569999999999999999999998765
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccC-cccCCCcccccccccchh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKD-TIVGDEMNRGISGGQKKR 152 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-t~vg~~~~~~LSGGqrqR 152 (1293)
..+.... +.+...+.+++.+||++..+ +.+. .||||||||
T Consensus 110 ~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p~-----eLSGGqqQR 150 (226)
T COG1136 110 IAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKPS-----ELSGGQQQR 150 (226)
T ss_pred HcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCch-----hcCHHHHHH
Confidence 5432110 01223566889999986555 5454 599999999
Q ss_pred hHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000773 153 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQI 224 (1293)
Q Consensus 153 v~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i 224 (1293)
|+|||||+.+|++++.||||.+||+.++..+++.++++.++.|+|+|+++|.| ++...|||++.|.+|++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999988899999987764 68889999999999984
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=339.70 Aligned_cols=217 Identities=22% Similarity=0.275 Sum_probs=177.2
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (255)
T PRK11300 6 LSVSGLMMRF-------------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIE 70 (255)
T ss_pred EEEeeEEEEE-------------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECC
Confidence 5666766543 34579999999999999999999999999999999999866 35899999998764
Q ss_pred hh---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC----------C--CCCHHHHHHHHHHHHHHcCCccccccc
Q 000773 775 QE---T-FARISGYCEQNDIHSPQVTVKESLIYSAFLRLA----------K--EVSKEDKIIFVEEVMDLVELESLKDAI 838 (1293)
Q Consensus 775 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----------~--~~~~~~~~~~~~~~l~~l~l~~~~~~~ 838 (1293)
.. . .+..++|++|++.+++.+||+||+.+....... . .....+....++++++.+|+.+..++.
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 150 (255)
T PRK11300 71 GLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ 150 (255)
T ss_pred CCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC
Confidence 31 1 234589999999999999999999875421100 0 001122334578889999998777776
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHh
Q 000773 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 917 (1293)
Q Consensus 839 ~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 917 (1293)
++ .||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++
T Consensus 151 ~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i 224 (255)
T PRK11300 151 AG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRI 224 (255)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEE
Confidence 54 79999999999999999999999999999999999999999999999875 899999999975 567889999
Q ss_pred heeecCcEEEEeCCCC
Q 000773 918 LLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 918 ~~l~~~G~~~~~g~~~ 933 (1293)
++|.+ |++++.|+.+
T Consensus 225 ~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 225 YVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEC-CeEEecCCHH
Confidence 99985 8999988853
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=359.45 Aligned_cols=219 Identities=25% Similarity=0.424 Sum_probs=182.1
Q ss_pred ceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCc
Q 000773 692 PLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 771 (1293)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 771 (1293)
.-.++|+||++.++..+ +.+||+|+||+|+|||.+||+||||+||||+.++|-...+ |.+|+|.+||.
T Consensus 463 ~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCe
Confidence 34789999999887654 4679999999999999999999999999999999999776 45899999999
Q ss_pred cCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--H-HHcCCcccccccccCCCCC
Q 000773 772 PKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEV--M-DLVELESLKDAIVGLPGVT 845 (1293)
Q Consensus 772 ~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~--l-~~l~l~~~~~~~~~~~~~~ 845 (1293)
|+++ ..+++.+|+|.|+|.+|.. ||+||+.|+.. +.+.++....++.. - =..++.+-.||.+|..+ .
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG-~ 603 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG-S 603 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCcc-c
Confidence 9765 3467889999999999865 99999998643 33444332211111 1 02356677899999654 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 846 ~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
+||||||||++|||||++||+||||||.||.||.++...|.+.|.++.+ ++|||++.|+. ...+.+|+|+++++ |+
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRL--STV~~Ad~Ivvi~~-G~ 679 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRL--STVRHADQIVVIDK-GR 679 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhh--hHhhhccEEEEEcC-Ce
Confidence 7999999999999999999999999999999999999999999988765 69999999986 47889999999985 99
Q ss_pred EEEeCCCC
Q 000773 926 VIYSGPLG 933 (1293)
Q Consensus 926 ~~~~g~~~ 933 (1293)
|++.|..+
T Consensus 680 V~E~G~h~ 687 (716)
T KOG0058|consen 680 VVEMGTHD 687 (716)
T ss_pred EEecccHH
Confidence 99999753
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=336.46 Aligned_cols=206 Identities=25% Similarity=0.283 Sum_probs=170.1
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCccCCh---hcccceEEEEccCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFPKKQ---ETFARISGYCEQNDIH 791 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~ 791 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.+||++|++.+
T Consensus 14 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 3456999999999999999999999999999999999976531 358999999987642 2345679999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 792 SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
++.+||+||+.+....+.. ....++..+.++++++.+|+.+ ..++. +.+||||||||++|||||+.+|++
T Consensus 94 ~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~l 167 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----AGKLSGGQQQRLCIARALAFQPEV 167 (250)
T ss_pred CCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999876432211 1123333456788999999854 23443 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 168 llLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14247 168 LLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPT 229 (250)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCH
Confidence 999999999999999999999999864 899999999975 56678999999975 899998875
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=343.42 Aligned_cols=217 Identities=20% Similarity=0.330 Sum_probs=177.1
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++..+... ...+.+|+|||++|++||++||+||||||||||+++|+|..++ ..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 56777776653100 0124699999999999999999999999999999999998763 4799999998763
Q ss_pred h-------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000773 775 Q-------ETFARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGV 844 (1293)
Q Consensus 775 ~-------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~ 844 (1293)
. ...++.+||++|++ .+++ .||.||+.+..... ..+.++..++++++++.+||. +..++.+.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 144 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPF---- 144 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc----
Confidence 2 13456799999986 3554 59999998864322 234445556788999999996 56666543
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+
T Consensus 145 -~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 145 -QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred -cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 79999999999999999999999999999999999999999999999764 899999999975 56778999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|++++.|++
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 899999885
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=339.36 Aligned_cols=215 Identities=24% Similarity=0.337 Sum_probs=179.2
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.... .+.+.+|+|+|++|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~----------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13650 5 IEVKNLTFKYKE----------DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLLT 72 (279)
T ss_pred EEEEeEEEEcCC----------CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 567777765421 0124599999999999999999999999999999999998763 5899999998764
Q ss_pred h---hcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 775 Q---ETFARISGYCEQND-IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~-~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
. ...++.+||++|++ ..++..||+||+.+..... ..++++..++++++++.+||.+..++.++ .||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgG 144 (279)
T PRK13650 73 EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPA-----RLSGG 144 (279)
T ss_pred cCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHH
Confidence 2 23456799999997 4677889999998864322 23455555678899999999887777654 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|.+ |+++..
T Consensus 145 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~ 221 (279)
T PRK13650 145 QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVEST 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999875 999999999975 34 67999999975 899998
Q ss_pred CCC
Q 000773 930 GPL 932 (1293)
Q Consensus 930 g~~ 932 (1293)
|++
T Consensus 222 g~~ 224 (279)
T PRK13650 222 STP 224 (279)
T ss_pred CCH
Confidence 885
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=349.29 Aligned_cols=207 Identities=20% Similarity=0.294 Sum_probs=177.6
Q ss_pred ccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCc----cCC---hhc----ccceEE
Q 000773 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF----PKK---QET----FARISG 783 (1293)
Q Consensus 715 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~----~~~---~~~----~~~~~~ 783 (1293)
.+++...+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|. +.. ... .++.++
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 345677899999999999999999999999999999999998763 5799999996 221 111 125799
Q ss_pred EEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000773 784 YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVA 863 (1293)
Q Consensus 784 ~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~ 863 (1293)
|++|++.++|.+||+||+.+....+ ..+++++..+++++++.+||.+..++.++ +|||||||||+|||||+.
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~ 181 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAM 181 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999875432 23445555678999999999988887765 699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 864 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 864 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|+||+|||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+++
T Consensus 182 ~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 182 DADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999999999765 899999999975 56788999999985 8999999864
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=337.82 Aligned_cols=204 Identities=27% Similarity=0.408 Sum_probs=171.4
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 794 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 13 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (258)
T PRK13548 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP 90 (258)
T ss_pred CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCC
Confidence 44569999999999999999999999999999999999865 357999999987532 2234578999999988889
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh------hCCCEE
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELV------ANPSII 868 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~------~~p~il 868 (1293)
+||+||+.+...... ...++....++++++.+|+.+..++.++ .|||||||||+||+||+ .+|++|
T Consensus 91 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~qrv~la~al~~~~~~~~~p~ll 162 (258)
T PRK13548 91 FTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGEQQRVQLARVLAQLWEPDGPPRWL 162 (258)
T ss_pred CCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEE
Confidence 999999987542211 1222333457889999999887777655 79999999999999999 599999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|||||+|||+.++..+.+.|++++ ++|+|||++||+++ ++...+|++++|.+ |++++.|+.+
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (258)
T PRK13548 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPA 226 (258)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHH
Confidence 9999999999999999999999987 56899999999975 56678999999985 8999888753
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=335.49 Aligned_cols=212 Identities=23% Similarity=0.342 Sum_probs=174.8
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+++||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 70 (237)
T PRK11614 6 LSFDKVSAHY-------------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDIT 70 (237)
T ss_pred EEEEeEEEee-------------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEecC
Confidence 5677776543 345699999999999999999999999999999999998663 5799999998754
Q ss_pred hh----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCH
Q 000773 775 QE----TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV-ELESLKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 775 ~~----~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~l~~~~~~~~~~~~~~~lSg 849 (1293)
.. ..++.++|++|++.+++.+||+||+.+..... ..++....++++++.+ ++.+..++.+ ..|||
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~ 140 (237)
T PRK11614 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMSG 140 (237)
T ss_pred CCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCCH
Confidence 31 23457999999999999999999998754211 1122233456777777 4665555543 37999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.
T Consensus 141 G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 218 (237)
T PRK11614 141 GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLE 218 (237)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999975 57888999999985 899999
Q ss_pred CCCC
Q 000773 930 GPLG 933 (1293)
Q Consensus 930 g~~~ 933 (1293)
|+.+
T Consensus 219 ~~~~ 222 (237)
T PRK11614 219 DTGD 222 (237)
T ss_pred CCHH
Confidence 9863
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=328.90 Aligned_cols=194 Identities=25% Similarity=0.364 Sum_probs=163.4
Q ss_pred ceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHH
Q 000773 725 EVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVTVKESLIY 803 (1293)
Q Consensus 725 ~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~ 803 (1293)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 3579999999876431 234679999999999999999999987
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000773 804 SAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883 (1293)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~ 883 (1293)
....+. .. .++..++++++++.+|+.+..++.+. +||||||||++||+||+.+|++++|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 532111 11 12233457899999999887777654 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 884 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 884 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
.+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999998764 899999999975 56678999999985 8887653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=336.68 Aligned_cols=204 Identities=24% Similarity=0.319 Sum_probs=172.2
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----------------hcccce
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----------------ETFARI 781 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----------------~~~~~~ 781 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (252)
T TIGR03005 11 GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNK 88 (252)
T ss_pred CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccccccchhHHHHHhhC
Confidence 345699999999999999999999999999999999998763 57999999986531 123567
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000773 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVEL 861 (1293)
Q Consensus 782 ~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL 861 (1293)
++|++|++.+++..|+.||+.+..... .....++....++++++.+|+.+..++.+. .||||||||++||+||
T Consensus 89 i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral 161 (252)
T TIGR03005 89 IGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPA-----QLSGGQQQRVAIARAL 161 (252)
T ss_pred eEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChh-----hcCHHHHHHHHHHHHH
Confidence 999999999999999999998753211 112333444567899999999877776543 7999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 862 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 862 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |++++.|+.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP 231 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999998765 899999999975 56678999999985 899988875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=335.49 Aligned_cols=210 Identities=22% Similarity=0.256 Sum_probs=169.1
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---c-ccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---T-FARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.... . .+..++|++|++.++
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 344579999999999999999999999999999999999741114579999999875421 1 223489999999999
Q ss_pred CCCCHHHHHHHHHHhcCC--C--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 793 PQVTVKESLIYSAFLRLA--K--EVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
+.+|++|++.+....... . ....++..++++++++.+|+. +..++.+. .+||||||||++||++|+.+|++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~l 165 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKL 165 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCE
Confidence 999999999875432111 0 112233345678899999997 45555443 14999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-HhHhheeecCcEEEEeCCC
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~~G~~~~~g~~ 932 (1293)
|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|.+ |++++.|+.
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 166 AILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 9999999999999999999999999877899999999975 45555 799999974 899998875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=341.63 Aligned_cols=216 Identities=25% Similarity=0.371 Sum_probs=179.4
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
-++++|+++... +++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 367777776542 13569999999999999999999999999999999999876 3589999999876
Q ss_pred C-----hhcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000773 774 K-----QETFARISGYCEQNDI-HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGL 847 (1293)
Q Consensus 774 ~-----~~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 847 (1293)
. ...+++.+||++|++. .+...||+||+.+..... ..+.++..++++++++.+||.+..++.++ .|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTH-----CL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcc-----cC
Confidence 3 1234567999999974 334679999998764322 22344444568899999999888777655 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEE
Q 000773 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926 (1293)
Q Consensus 848 SgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~ 926 (1293)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 899999999975 46678999999985 899
Q ss_pred EEeCCCC
Q 000773 927 IYSGPLG 933 (1293)
Q Consensus 927 ~~~g~~~ 933 (1293)
++.|+.+
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=333.99 Aligned_cols=215 Identities=21% Similarity=0.252 Sum_probs=173.7
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g 770 (1293)
-+.++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFY-------------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEe-------------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 46777776643 3356999999999999999999999999999999999976532 2479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 841 (1293)
.++.. ...++.++|++|++.+++ +||+||+.+...... .....+..++++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234567999999988875 899999988643321 112233345578888888873 334443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
.++||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|+++ ++.+.+|++++|.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 34799999999999999999999999999999999999999999999996 4799999999975 5677899999998
Q ss_pred cCcEEEEeCCC
Q 000773 922 RGGQVIYSGPL 932 (1293)
Q Consensus 922 ~~G~~~~~g~~ 932 (1293)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=334.68 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=171.2
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQNDIHSP 793 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~ 793 (1293)
+++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.++|++|++.+++
T Consensus 13 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (242)
T TIGR03411 13 DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFE 90 (242)
T ss_pred CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecCCCCHHHHHhcCeeEeccccccCC
Confidence 445699999999999999999999999999999999998653 479999999875421 12346999999999999
Q ss_pred CCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 794 QVTVKESLIYSAFLRLA--K---EVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~--~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
.+||+||+.+....... . ....++...+++++++.+|+.+..++.++ .|||||||||+|||||+.+|++|
T Consensus 91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Ge~qrv~laral~~~p~~l 165 (242)
T TIGR03411 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG-----LLSHGQKQWLEIGMLLMQDPKLL 165 (242)
T ss_pred CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999875432100 0 01122334567899999999887776654 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |+++..|+.+
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~~ 227 (242)
T TIGR03411 166 LLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSLD 227 (242)
T ss_pred EecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCHH
Confidence 99999999999999999999999876 799999999975 56678999999985 8999888753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=338.85 Aligned_cols=207 Identities=27% Similarity=0.384 Sum_probs=172.4
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSP 793 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~ 793 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|+..+++
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (255)
T PRK11231 12 YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPE 89 (255)
T ss_pred ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCC
Confidence 345679999999999999999999999999999999999865 357999999986532 233456999999998888
Q ss_pred CCCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000773 794 QVTVKESLIYSAFL--RLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlD 871 (1293)
.+|+.||+.+.... ..... ..++...+++++++.+|+.+..++.++ .||||||||++||+||+.+|++|+||
T Consensus 90 ~~tv~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllD 163 (255)
T PRK11231 90 GITVRELVAYGRSPWLSLWGR-LSAEDNARVNQAMEQTRINHLADRRLT-----DLSGGQRQRAFLAMVLAQDTPVVLLD 163 (255)
T ss_pred CccHHHHHHhccchhhhhccC-CCHHHHHHHHHHHHHcCCHHHHcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999874211 11111 112233457889999999877777654 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 872 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++..|+.+
T Consensus 164 EP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 164 EPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 999999999999999999998877999999999975 57788999999985 8999988764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=336.34 Aligned_cols=216 Identities=25% Similarity=0.278 Sum_probs=175.3
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~ 771 (1293)
++++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 5 l~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 5 IETVNLRVYY-------------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred EEEEeEEEEe-------------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 5667776543 3456999999999999999999999999999999999986542 35799999998
Q ss_pred cCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000773 772 PKK-----QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLP 842 (1293)
Q Consensus 772 ~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 842 (1293)
++. ...+++.++|++|++.+++.+||.||+.+....+.. ....++....++++++.+|+.+ ..++.
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 146 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY---- 146 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC----
Confidence 763 123456799999999999999999999876543211 1123333445788899998843 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
...||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|.+
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~ 223 (253)
T PRK14267 147 -PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL 223 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999865 699999999975 56778999999985
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 224 -G~i~~~~~~ 232 (253)
T PRK14267 224 -GKLIEVGPT 232 (253)
T ss_pred -CEEEEeCCH
Confidence 899998875
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=336.43 Aligned_cols=214 Identities=24% Similarity=0.295 Sum_probs=174.2
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC---CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~~g 770 (1293)
.++++|+++.. +++.+|+|+||++++||++||+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWY-------------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 46677776543 345699999999999999999999999999999999997653 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 841 (1293)
.++.. ..+++.++|++|++.+++ +|++||+.+..... ..+.++..++++++++.+|+. +..++.+
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 152 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA-- 152 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh--
Confidence 87532 124567999999998888 89999998864332 123333345578899999884 3334433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 153 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 153 ---LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999864 799999999975 5667899999997
Q ss_pred cCcEEEEeCCC
Q 000773 922 RGGQVIYSGPL 932 (1293)
Q Consensus 922 ~~G~~~~~g~~ 932 (1293)
+ |++++.|++
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=338.24 Aligned_cols=202 Identities=22% Similarity=0.316 Sum_probs=171.5
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccCCC-CCC
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQNDI-HSP 793 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~-~~~ 793 (1293)
++.+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++. .+.
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 3469999999999999999999999999999999999866 357999999987642 234567999999975 366
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
..|+.||+.+..... ..+.++..++++++++.+|+.+..++.++ .||||||||++||+||+.+|++|+||||
T Consensus 92 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 92 GRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred cchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 789999998764322 23344444568899999999888777654 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|+|||+.++..+.+.|++++++|+|||++||+++ ++ ..+|++++|.+ |++++.|+.+
T Consensus 164 t~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~~ 220 (274)
T PRK13644 164 TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEPE 220 (274)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999877999999999975 34 67999999985 8999999853
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=332.39 Aligned_cols=202 Identities=25% Similarity=0.335 Sum_probs=167.6
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.++
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIF 87 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCccc
Confidence 344579999999999999999999999999999999999876 3579999999875421 1245699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE-LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlD 871 (1293)
+.+|++||+.+....+. ... .+.++++++.++ +.+..++.+. .||||||||++||++|+.+|++++||
T Consensus 88 ~~~tv~~~l~~~~~~~~---~~~---~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~illlD 156 (230)
T TIGR03410 88 PRLTVEENLLTGLAALP---RRS---RKIPDEIYELFPVLKEMLGRRGG-----DLSGGQQQQLAIARALVTRPKLLLLD 156 (230)
T ss_pred CCCcHHHHHHHHHHhcC---cch---HHHHHHHHHHHHhHHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999999987643321 111 123466777776 5555566544 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 872 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |+++..|+.+
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 217 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGD 217 (230)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999998875 899999999975 56668999999975 8999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=338.84 Aligned_cols=204 Identities=24% Similarity=0.350 Sum_probs=170.4
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-----hcccceEEEEccCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-----ETFARISGYCEQNDIH 791 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~ 791 (1293)
++++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++..
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 88 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQ 88 (271)
T ss_pred cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcccccCCHHHHHhheEEEeeChhh
Confidence 3445699999999999999999999999999999999998763 57999999987531 1234679999999753
Q ss_pred -CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 792 -SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 792 -~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+...|+.||+.+..... ....++..+.++++++.+|+.+..++.++ .||||||||++||++|+.+|++|+|
T Consensus 89 ~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 89 QIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQ-----CLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred ccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCch-----hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 34568999998754322 12333444567889999999887776654 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999877999999999975 56678999999985 899998875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=338.60 Aligned_cols=209 Identities=27% Similarity=0.370 Sum_probs=172.5
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC-ceeEEEEEcCccCCh--------hcccceEEEEccC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFPKKQ--------ETFARISGYCEQN 788 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~~~~--------~~~~~~~~~v~q~ 788 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+... ...++.++|++|+
T Consensus 15 ~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 4467999999999999999999999999999999999986542 236999999987532 1234568999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000773 789 DIHSPQVTVKESLIYSAFLRLA-----KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVA 863 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~ 863 (1293)
+.+++.+||+||+.+......+ .....++...+++++++.+|+.+..++.++ .|||||||||+|||||+.
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~ 169 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS-----TLSGGQQQRVAIARALMQ 169 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc-----ccCHHHHHHHHHHHHHhc
Confidence 9999999999999875321100 001112334567899999999887777655 799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 864 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 864 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|.+ |++++.|+.+
T Consensus 170 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQ 238 (262)
T ss_pred CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999999999999764 899999999975 46788999999985 8999998864
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=329.69 Aligned_cols=198 Identities=26% Similarity=0.357 Sum_probs=166.9
Q ss_pred ccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 000773 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLI 802 (1293)
Q Consensus 723 L~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~ 802 (1293)
|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 35899999998764321 12489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 000773 803 YSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 882 (1293)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~ 882 (1293)
+....... ....++..++++++++.+|+.+..++.++ +||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 22334444567899999999887777654 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 883 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 883 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999975 56788999999985 899887764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=329.97 Aligned_cols=203 Identities=29% Similarity=0.433 Sum_probs=170.4
Q ss_pred cccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEc-cCCCCC
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCE-QNDIHS 792 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~ 792 (1293)
+++++++|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++ |++.++
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 44667899999999999999999999999999999999998663 57999999976432 23456789997 556788
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+|++|++.+....+ ....++..+.++++++.+|+.+..++.++ .||||||||++||++|+.+|++|+|||
T Consensus 108 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 108 WDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred CCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 8999999998765432 12333444557889999999888777655 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 99999999999999999998765 899999999975 56778999999985 8887754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=335.14 Aligned_cols=216 Identities=21% Similarity=0.296 Sum_probs=175.3
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~ 771 (1293)
+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 5 l~i~~v~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 5 IDVKDLNIYY-------------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred EEEeeEEEEE-------------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 5666666543 3456999999999999999999999999999999999976532 25899999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 842 (1293)
+... ...++.++|++|++.+++.+||+||+.+....+. ....++..++++++++.+|+. +..++.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP---- 145 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC----
Confidence 7531 2345679999999999999999999987654321 112333445678889999884 233443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee-
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK- 921 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~- 921 (1293)
+.+|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 146 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~ 222 (258)
T PRK14241 146 -GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNL 222 (258)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEec
Confidence 347999999999999999999999999999999999999999999999864 689999999975 5678899999997
Q ss_pred ----cCcEEEEeCCC
Q 000773 922 ----RGGQVIYSGPL 932 (1293)
Q Consensus 922 ----~~G~~~~~g~~ 932 (1293)
++|++++.|+.
T Consensus 223 ~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 223 EATGKPGRLVEIDDT 237 (258)
T ss_pred ccCCCCceEEecCCH
Confidence 25899998875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=338.34 Aligned_cols=215 Identities=25% Similarity=0.346 Sum_probs=179.1
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|++..... +.+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 567777654321 124599999999999999999999999999999999998763 4899999998764
Q ss_pred h---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 775 Q---ETFARISGYCEQNDI-HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
. ...++.+||++|++. .++..||.||+.+..... ..+.++..++++++++.+||.+..++.++ .||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHH
Confidence 3 234567999999973 677789999998764332 22344445668899999999988877755 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|.+ |++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999876 899999999975 34 46999999985 899999
Q ss_pred CCCC
Q 000773 930 GPLG 933 (1293)
Q Consensus 930 g~~~ 933 (1293)
|+.+
T Consensus 222 g~~~ 225 (279)
T PRK13635 222 GTPE 225 (279)
T ss_pred CCHH
Confidence 9853
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=324.65 Aligned_cols=193 Identities=24% Similarity=0.354 Sum_probs=162.8
Q ss_pred cccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC---h----hcccceEEEEccC
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---Q----ETFARISGYCEQN 788 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~~v~q~ 788 (1293)
.++++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|+
T Consensus 7 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 84 (206)
T TIGR03608 7 KFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQN 84 (206)
T ss_pred EECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecc
Confidence 3445679999999999999999999999999999999999876 35799999998742 1 1235679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
+.+++.+|++||+.+..... .....+..++++++++.+|+.+..++.+. +||||||||++||+||+.+|++|
T Consensus 85 ~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 85 FALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred hhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999998865432 12233444567899999999887777654 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhhee
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
+|||||+|||+.++..+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999998877999999999974 45678887764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=337.79 Aligned_cols=202 Identities=25% Similarity=0.373 Sum_probs=171.3
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDI-HSPQV 795 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~-~~~~l 795 (1293)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++. .+...
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 459999999999999999999999999999999999866 358999999987542 234567899999974 34468
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
||.||+.+..... ....++..++++++++.+|+.+..++.+. .||||||||++||+||+.+|++|+|||||+
T Consensus 95 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 95 TVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998764322 23344444567899999999887777654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 876 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.+
T Consensus 167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~ 223 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVE 223 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHH
Confidence 99999999999999999875 899999999975 56788999999985 8999999863
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=338.14 Aligned_cols=217 Identities=27% Similarity=0.375 Sum_probs=177.4
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|++... +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 12 l~i~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 76 (265)
T PRK10575 12 FALRNVSFRV-------------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLE 76 (265)
T ss_pred EEEeeEEEEE-------------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehh
Confidence 5677776543 34569999999999999999999999999999999999865 35799999998653
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 775 Q---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLA-KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
. ..+++.++|++|++.+++.+|+.||+.+....... .........++++++++.+++.+..++.++ .||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 151 (265)
T PRK10575 77 SWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSGG 151 (265)
T ss_pred hCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCHH
Confidence 2 23456799999998888999999999874321100 001112223457889999999877777655 69999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~ 229 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQ 229 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEe
Confidence 999999999999999999999999999999999999999999765 899999999975 56788999999985 899988
Q ss_pred CCCC
Q 000773 930 GPLG 933 (1293)
Q Consensus 930 g~~~ 933 (1293)
|+.+
T Consensus 230 ~~~~ 233 (265)
T PRK10575 230 GTPA 233 (265)
T ss_pred cCHH
Confidence 8754
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=321.70 Aligned_cols=201 Identities=23% Similarity=0.308 Sum_probs=181.8
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---h----cccceEEEEccCCCCCC
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---E----TFARISGYCEQNDIHSP 793 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~----~~~~~~~~v~q~~~~~~ 793 (1293)
.-++|+|++++.||++.|||-||||||||+++|.++.+ +..|+|.++|.++.. . -+++.++.|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 45899999999999999999999999999999999887 458999999987632 1 23467999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
+.||.||..|+..++ ..+++++++++.+.++.+||....++++. +|||||||||.|||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~-----eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCcc-----cccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999987665 46788899999999999999999998865 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+|.|||--+.++++.|.++.++ ++||+++|||.+ |...+-|||.+|. +|+++..|+++
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 9999999999999999998765 899999999986 7888999999997 59999999975
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=322.61 Aligned_cols=170 Identities=25% Similarity=0.312 Sum_probs=134.6
Q ss_pred eeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHHH
Q 000773 726 VTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSA 805 (1293)
Q Consensus 726 vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~ 805 (1293)
=.+++..||+++++||||-||||+.++|+|..++ .+|+ . ..-.++|-||.-.--.+.||++.|.-..
T Consensus 360 ~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~-------~~~~vSyKPQyI~~~~~gtV~~~l~~~~ 426 (591)
T COG1245 360 EEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----E-------EDLKVSYKPQYISPDYDGTVEDLLRSAI 426 (591)
T ss_pred cCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----C-------ccceEeecceeecCCCCCcHHHHHHHhh
Confidence 3577889999999999999999999999997764 3554 1 1224788899766667889999776433
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 000773 806 FLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885 (1293)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i 885 (1293)
..+...+ ....++.+-|.|.+..++.+. +|||||.|||+||.+|.+++++.+||||++.||.+.+..+
T Consensus 427 ~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~v 494 (591)
T COG1245 427 RSAFGSS-------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494 (591)
T ss_pred hhhcccc-------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHH
Confidence 2211111 123578888999999988876 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheee
Q 000773 886 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 886 ~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
-+.||+..+. ++|.+++-||.-+ +--..||+++..
T Consensus 495 akvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 495 AKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999998865 8899999998653 333456666663
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=338.97 Aligned_cols=200 Identities=27% Similarity=0.363 Sum_probs=166.9
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-------hcccceEEEEccCC--C
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-------ETFARISGYCEQND--I 790 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~--~ 790 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 4599999999999999999999999999999999998663 57999999987532 22456799999996 3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 791 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
+++ .||+||+.+..... ....++..+.++++++.+|+. ...++.++ .||||||||++||+||+.+|++|+
T Consensus 98 ~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 98 LFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPF-----ELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEE
Confidence 444 69999998764322 123344445678899999997 35565544 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKP 229 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999877899999999975 56678999999985 899988875
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=325.48 Aligned_cols=200 Identities=24% Similarity=0.374 Sum_probs=167.2
Q ss_pred cccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-------hcccceEEEEc
Q 000773 714 GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-------ETFARISGYCE 786 (1293)
Q Consensus 714 ~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~ 786 (1293)
+++++++.+ |+|+++++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++
T Consensus 7 ~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 81 (214)
T cd03297 7 EKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81 (214)
T ss_pred eEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEe
Confidence 345566655 99999999 99999999999999999999998763 47999999987531 12345799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
|++.+++.+|++||+.+..... ..+...++++++++.+|+.+..++.++ .||||||||++||+||+.+|+
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 82 QQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred cCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcc-----cCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999998764321 222333457889999999877666544 799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
+++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999875 899999999975 46678999999985 8887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=348.92 Aligned_cols=201 Identities=25% Similarity=0.404 Sum_probs=171.2
Q ss_pred cccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-------hcccceEEEEccC
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-------ETFARISGYCEQN 788 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~ 788 (1293)
+++++. + |+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|+
T Consensus 8 ~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 83 (354)
T TIGR02142 8 RLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE 83 (354)
T ss_pred EECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecC
Confidence 344444 4 89999999999999999999999999999998763 57999999987532 1235679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
+.+++.+||+||+.+..... ...+..++++++++.+||.+..++.+. +|||||||||+|||||+.+|++|
T Consensus 84 ~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRvalAraL~~~p~ll 153 (354)
T TIGR02142 84 ARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAIGRALLSSPRLL 153 (354)
T ss_pred CccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999998864321 123334567899999999988887755 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |+++..|++
T Consensus 154 lLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 154 LMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999875 899999999975 57778999999985 899999875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=327.48 Aligned_cols=212 Identities=25% Similarity=0.348 Sum_probs=172.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++..... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 7 l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~ 75 (228)
T PRK10584 7 VEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPLH 75 (228)
T ss_pred EEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEcc
Confidence 6777777654210 0013599999999999999999999999999999999998663 5799999998754
Q ss_pred hhc-------ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000773 775 QET-------FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGL 847 (1293)
Q Consensus 775 ~~~-------~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 847 (1293)
... .++.++|++|++.+++.+|+.||+.+....+. ....+..++++++++.+++.+..++.+. .|
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 147 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLPA-----QL 147 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChh-----hC
Confidence 211 12569999999999999999999987643321 2233344568899999999887776654 69
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEE
Q 000773 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926 (1293)
Q Consensus 848 SgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~ 926 (1293)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+ +.+|++++|.+ |++
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~i 224 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQL 224 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999975 34 66999999975 887
Q ss_pred EE
Q 000773 927 IY 928 (1293)
Q Consensus 927 ~~ 928 (1293)
++
T Consensus 225 ~~ 226 (228)
T PRK10584 225 QE 226 (228)
T ss_pred Ee
Confidence 64
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=341.85 Aligned_cols=221 Identities=18% Similarity=0.254 Sum_probs=177.4
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC-C-ceeEEEEEcCcc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG-G-YIEGDIRISGFP 772 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~-~-~~~G~i~~~g~~ 772 (1293)
++++|++...... .+...+|+||||++++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 5677776654211 1124699999999999999999999999999999999997642 2 357999999987
Q ss_pred CCh---hc----ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc---cccccc
Q 000773 773 KKQ---ET----FARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL---KDAIVG 840 (1293)
Q Consensus 773 ~~~---~~----~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~~ 840 (1293)
+.. .. +++.++|++|++ .+.|.+|+.+++........ ....++..+++.++++.+||.+. .++.
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 642 11 124699999998 57899999998865543221 23445555678899999999752 3443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhhe
Q 000773 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLL 919 (1293)
Q Consensus 841 ~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~ 919 (1293)
+.+|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++++ .|.|+|++||+++ .+.+.+|++++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999986 4899999999975 46678999999
Q ss_pred eecCcEEEEeCCCC
Q 000773 920 LKRGGQVIYSGPLG 933 (1293)
Q Consensus 920 l~~~G~~~~~g~~~ 933 (1293)
|.+ |++++.|+.+
T Consensus 227 m~~-G~ive~g~~~ 239 (326)
T PRK11022 227 MYA-GQVVETGKAH 239 (326)
T ss_pred EEC-CEEEEECCHH
Confidence 985 9999999853
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=337.32 Aligned_cols=218 Identities=22% Similarity=0.305 Sum_probs=178.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.+.++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGY-------------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEE-------------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 46677776543 345699999999999999999999999999999999998663 479999999875
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLA-KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 849 (1293)
.. ...++.++|++|++.+++.+|++||+.+......+ .....+....+++++++.+|+.+..++.+. .|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD-----TLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCh
Confidence 32 22345699999999999999999999764211100 000112233457889999999877777654 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEE
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIY 928 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~ 928 (1293)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999864 899999999975 57888999999985 89999
Q ss_pred eCCCC
Q 000773 929 SGPLG 933 (1293)
Q Consensus 929 ~g~~~ 933 (1293)
.|+.+
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 98864
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=335.47 Aligned_cols=207 Identities=27% Similarity=0.396 Sum_probs=171.8
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 794 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 12 ~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (256)
T TIGR03873 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVP 89 (256)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcccCCHHHHhhheEEecccCccCCC
Confidence 445799999999999999999999999999999999998663 47999999987542 2234568999999888888
Q ss_pred CCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 795 VTVKESLIYSAFLRLA-KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
+||+||+.+....... ......+..+++.++++.+++.+..++.++ .||||||||++||+||+.+|++++||||
T Consensus 90 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP 164 (256)
T TIGR03873 90 LTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGGERQRVHVARALAQEPKLLLLDEP 164 (256)
T ss_pred CCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 9999999874211000 001112223457889999999887777654 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|+|||+.++..+.+.|++++++|.|||++||+++ ++.+.+|++++|.+ |+++..|+.+
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 165 TNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 9999999999999999999877899999999986 57788999999985 8999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=293.72 Aligned_cols=213 Identities=24% Similarity=0.355 Sum_probs=180.9
Q ss_pred cccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC-------------h-
Q 000773 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK-------------Q- 775 (1293)
Q Consensus 710 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~-------------~- 775 (1293)
++++.+++|...+|++||++.+.|+++.|+|.|||||||+|+||.-+.+ +..|.|.+||..+. .
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~ 86 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKR 86 (256)
T ss_pred hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHH
Confidence 4567788899999999999999999999999999999999999998665 35799999997531 1
Q ss_pred --hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000773 776 --ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853 (1293)
Q Consensus 776 --~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 853 (1293)
...+...|+|+|+..+++.+||.||+.-+.. +. -..++.+..++++..++.+|+.+.+|.+.. .|||||+|
T Consensus 87 q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-----~LSGGQQQ 159 (256)
T COG4598 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADAYPA-----HLSGGQQQ 159 (256)
T ss_pred HHHHHHHHhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhcCcc-----ccCchHHH
Confidence 1123457999999999999999999964321 11 134677777889999999999999887755 69999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 854 rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|++|||||+.+|+++++|||||.|||+-.-++++.++.++++|+|++++||.... .-+...+++.|.+ |.|.+.||++
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 9999999999999999999999999999999999999999999999999997542 3445678888875 9999999974
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=341.95 Aligned_cols=226 Identities=22% Similarity=0.238 Sum_probs=181.6
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
-++.+|+++....... .....+.+.+|+||||+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~---~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRG---LFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCC---ccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 3678888766532110 00001235699999999999999999999999999999999998763 479999999876
Q ss_pred Ch------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000773 774 KQ------ETFARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGV 844 (1293)
Q Consensus 774 ~~------~~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~ 844 (1293)
.. ..+++.++||+|++ .+.|.+|+.+++........ ...+++..+++.++++.+||.+ ..++.+
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p----- 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYP----- 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCC-----
Confidence 32 12456799999998 58899999999876543321 2344555567899999999963 556654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
.+|||||||||+|||||+.+|++|++||||++||..++.+++++|+++.++ |.|||++||+++ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999999765 999999999965 45568999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|++++.|+.+
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 8999999853
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=334.74 Aligned_cols=204 Identities=23% Similarity=0.339 Sum_probs=169.7
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------cccceEEEEccCC--C
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------TFARISGYCEQND--I 790 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~--~ 790 (1293)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++ .
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 3569999999999999999999999999999999999876 3579999999875421 1345799999996 4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 791 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
+++.+||+||+.+..... .....++...+++++++.+|+. +..++.++ +||||||||++|||||+.+|++|+
T Consensus 101 ~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPR-----QLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred cCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 677899999997654211 1122333345678999999995 56666544 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.+|++++|.+ |++++.|+.+
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 236 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVA 236 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHH
Confidence 99999999999999999999998865 899999999975 56678999999985 8999998863
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=367.90 Aligned_cols=212 Identities=22% Similarity=0.324 Sum_probs=177.4
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+||||++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.+.... ..++.+||++|++.++
T Consensus 15 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 15 FGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred eCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccC
Confidence 345579999999999999999999999999999999999866433589999999876431 1245699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+||+||+.+....+.......++..++++++++.+|+.+..++.++ +|||||||||+||+||+.+|++|||||
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDE 169 (506)
T PRK13549 95 KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLVEIAKALNKQARLLILDE 169 (506)
T ss_pred CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999876432211112233334568899999999887777765 799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCC
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRN 935 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~ 935 (1293)
||+|||+.++..+++.|++++++|+|||++||+++ .+.+.+|++++|.+ |++++.|+.++.
T Consensus 170 Pt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 230 (506)
T PRK13549 170 PTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAGM 230 (506)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeecccccC
Confidence 99999999999999999999877999999999975 56678999999985 899999987643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=331.43 Aligned_cols=216 Identities=21% Similarity=0.258 Sum_probs=174.9
Q ss_pred eeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--C-CceeEEEEEc
Q 000773 693 LAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIRIS 769 (1293)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~ 769 (1293)
..+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 12 ~~l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 12 SKIQVRNLNFYY-------------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred ceEEEEEEEEEe-------------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 356778877654 23469999999999999999999999999999999999754 1 1357999999
Q ss_pred CccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----cccccccc
Q 000773 770 GFPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVG 840 (1293)
Q Consensus 770 g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~ 840 (1293)
|.+... ...++.++|++|++.+++ .|++||+.+...... ..+.++..++++++++.+++. +..++.
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 153 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS-- 153 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC--
Confidence 987631 234567999999998887 899999987643221 123344445678899999974 233443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhhee
Q 000773 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 841 ~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
..+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||+++ ++.+.+|++++|
T Consensus 154 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l 228 (260)
T PRK10744 154 ---GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFM 228 (260)
T ss_pred ---CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 34799999999999999999999999999999999999999999999986 4789999999975 566789999999
Q ss_pred ecCcEEEEeCCC
Q 000773 921 KRGGQVIYSGPL 932 (1293)
Q Consensus 921 ~~~G~~~~~g~~ 932 (1293)
.+ |+++..|+.
T Consensus 229 ~~-G~i~~~g~~ 239 (260)
T PRK10744 229 YL-GELIEFGNT 239 (260)
T ss_pred EC-CEEEEeCCH
Confidence 85 899998875
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=330.92 Aligned_cols=206 Identities=22% Similarity=0.284 Sum_probs=168.0
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC-CceeEEEEEcCccCCh---hcccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~-~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.+... ...++.++|++|++.++
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 3445799999999999999999999999999999999997532 2457999999987643 23456799999999888
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
+ .|++||+.+....+... ...++...+++++++.+++.+ ..++. .+.||||||||++|||||+.+|+++
T Consensus 92 ~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~ll 164 (246)
T PRK14269 92 V-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALALSGGQQQRLCIARALAIKPKLL 164 (246)
T ss_pred c-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 7 69999998764332110 012233345778999999953 23333 3479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 165 lLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 225 (246)
T PRK14269 165 LLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGES 225 (246)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999864 899999999975 57778999999985 899998875
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=329.84 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=173.3
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--C-CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~g 770 (1293)
.++++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFY-------------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEE-------------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 46778877654 33469999999999999999999999999999999999642 1 13579999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL----KDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~ 841 (1293)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....++..++++++++.+|+.+. .++.
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHES--- 146 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87532 123567999999998888 599999988653321 11223334557888999998542 2333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++.+.+|++++|.
T Consensus 147 --~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14242 147 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFY 222 (253)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999854 799999999975 5667899999998
Q ss_pred cCcEEEEeCCC
Q 000773 922 RGGQVIYSGPL 932 (1293)
Q Consensus 922 ~~G~~~~~g~~ 932 (1293)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14242 223 M-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 5 899988875
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=327.23 Aligned_cols=203 Identities=27% Similarity=0.383 Sum_probs=172.8
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lT 796 (1293)
+++.+++|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.... ..++.++|++|++.+++.+|
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT 88 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEEEecccccCCCCc
Confidence 345699999999999999999999999999999999998763 479999999876431 23467999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
++||+.+....+. ...+.....++++++.+|+.+..++.+. .||+|||||++|||||+.+|++++|||||+|
T Consensus 89 ~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 89 VFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKPS-----QLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999987654331 2233334467889999999887777654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 877 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 9999999999999999865 899999999975 56778999999985 899988864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=318.22 Aligned_cols=196 Identities=31% Similarity=0.580 Sum_probs=161.7
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC-ceeEEEEEcCcc
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFP 772 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~ 772 (1293)
.++|+|+++..+.+ .+++.+|+++||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999887532 13567999999999999999999999999999999999986532 468999999987
Q ss_pred CCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 773 KKQ--ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 773 ~~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
... ...++.++|++|++.+++.+||+||+.+..... .++. ...||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999999999999999997653210 2222 2379999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.+|++++|.+ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 677777666543367788999999985 888875
Q ss_pred C
Q 000773 930 G 930 (1293)
Q Consensus 930 g 930 (1293)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=302.02 Aligned_cols=206 Identities=24% Similarity=0.395 Sum_probs=160.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN--RDLKVRGEITYNGYRLNEF-----VPQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+||++|||||||||||+++..... |..+++|+|.++|+++.+. ..++++|+|+|.|..|| +|++||+.|+.+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 589999999999999999988754 4457899999999987553 24688999999999998 899999999998
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccchh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQKKR 152 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqR 152 (1293)
+.+..+ .. + +++++.-|+.-.|= +.+|+.- +...+|||||+||
T Consensus 114 ~~g~~~--~~------------------l--------------deiVe~sLk~AaLWdEVKDrL~--~sa~~LSGGQQQR 157 (253)
T COG1117 114 LHGIKD--KE------------------L--------------DEIVESSLKKAALWDEVKDRLH--KSALGLSGGQQQR 157 (253)
T ss_pred hhccch--HH------------------H--------------HHHHHHHHHHhHhHHHhHHHhh--CCccCCChhHHHH
Confidence 765422 00 0 11122222222221 1222221 2235699999999
Q ss_pred hHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhh
Q 000773 153 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRER 232 (1293)
Q Consensus 153 v~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~ 232 (1293)
++|||||+.+|+||+||||||+|||.+...|-++|.++.+ .-|||++ +|.+.++.+..|+...+..|++++.|+.++
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviV-THnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIV-THNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEE-eCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 9999999999999999999999999999999999999974 5688886 566789999999999999999999999988
Q ss_pred HHHHHHhCCCCCCCCCChhhHH
Q 000773 233 VLEFFESCGFCCPERKGTADFL 254 (1293)
Q Consensus 233 ~~~~f~~~G~~~~~~~~~~~~~ 254 (1293)
+. ..|.++.+.||+
T Consensus 235 iF--------~~P~~~~TedYi 248 (253)
T COG1117 235 IF--------TNPKHKRTEDYI 248 (253)
T ss_pred hh--------cCccHHHHHHHh
Confidence 73 346655555544
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=338.68 Aligned_cols=225 Identities=20% Similarity=0.295 Sum_probs=180.3
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC-ceeEEEEEcCcc
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFP 772 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~-~~~G~i~~~g~~ 772 (1293)
-++++|++...... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 36788887655321 12356999999999999999999999999999999999976532 237999999987
Q ss_pred CCh---hc---c-cceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000773 773 KKQ---ET---F-ARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG 843 (1293)
Q Consensus 773 ~~~---~~---~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 843 (1293)
+.. .. + ++.++||+|++ .+.|.+|+.+++........ ..+.++..+++.++++.+||.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 642 11 1 24799999998 68899999999876543321 234555556788999999997533221 1 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
+.+|||||||||+||+||+.+|++|++||||+|||+.++..++++|+++.++ |.|+|++|||++ .+.+.+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4589999999999999999999999999999999999999999999999765 899999999975 45678999999975
Q ss_pred CcEEEEeCCCC
Q 000773 923 GGQVIYSGPLG 933 (1293)
Q Consensus 923 ~G~~~~~g~~~ 933 (1293)
|++++.|+.+
T Consensus 238 -G~ive~g~~~ 247 (330)
T PRK09473 238 -GRTMEYGNAR 247 (330)
T ss_pred -CEEEEECCHH
Confidence 9999999864
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=335.46 Aligned_cols=202 Identities=29% Similarity=0.366 Sum_probs=170.4
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-----hcccceEEEEccCCC-CCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-----ETFARISGYCEQNDI-HSP 793 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~~~ 793 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 4699999999999999999999999999999999998663 47999999987631 123567999999963 334
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
..||.||+.+..... ....++...++.++++.+|+.+..++.++ .||||||||++||+||+.+|++++||||
T Consensus 93 ~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 93 APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579999998754321 12344444567899999999888887755 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+.+
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPK 222 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999877999999999975 56678999999985 8999998853
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=322.71 Aligned_cols=198 Identities=24% Similarity=0.313 Sum_probs=166.8
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHH
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-ETFARISGYCEQNDIHSPQVTVKES 800 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~ 800 (1293)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 46799999999999999999999999999999998763 47999999987643 2345679999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000773 801 LIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880 (1293)
Q Consensus 801 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~ 880 (1293)
+.+...... . ...+...+++++++.+|+.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986532211 1 111223457889999999887777654 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCC
Q 000773 881 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931 (1293)
Q Consensus 881 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~ 931 (1293)
++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998765 899999999975 46678999999974 89988764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=331.12 Aligned_cols=204 Identities=23% Similarity=0.276 Sum_probs=166.2
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCC---CCCceeEEEEEcCccCCh-----hcccceEEEEccCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIRISGFPKKQ-----ETFARISGYCEQND 789 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~---~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~ 789 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|.+... ...++.++|++|++
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 93 (250)
T PRK14245 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93 (250)
T ss_pred CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCC
Confidence 3456999999999999999999999999999999999952 221247999999987642 23456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL----KDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
.+++ .|++||+.+....+. ....+...+.++++++.+|+.+. .++. +..||||||||++|||||+.+|
T Consensus 94 ~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p 165 (250)
T PRK14245 94 NPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKES-----AFALSGGQQQRLCIARAMAVSP 165 (250)
T ss_pred ccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCC-----cccCCHHHHHHHHHHHHHhcCC
Confidence 8887 699999987643321 11222233457889999998642 3333 3479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 166 ~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~ 229 (250)
T PRK14245 166 SVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDT 229 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999985 4799999999975 56788999999975 899999975
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=333.27 Aligned_cols=216 Identities=24% Similarity=0.271 Sum_probs=174.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC---CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~~g 770 (1293)
.+.++|+++.. +++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFY-------------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEE-------------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 46788887654 335699999999999999999999999999999999997643 13579999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 841 (1293)
.++.. ..+++.++|++|++.+++. ||.||+.+....+.. .....+...+++++++.+|+.+ ..++.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 2345679999999988875 999999876543211 1122333455788999999964 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
++.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+...+|++++|.
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999865 789999999975 4667889999998
Q ss_pred cCcEEEEeCCC
Q 000773 922 RGGQVIYSGPL 932 (1293)
Q Consensus 922 ~~G~~~~~g~~ 932 (1293)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 5 899998874
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=327.80 Aligned_cols=203 Identities=29% Similarity=0.439 Sum_probs=173.0
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lT 796 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.... ..++.++|++|++.+++.+|
T Consensus 11 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (237)
T TIGR00968 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLT 88 (237)
T ss_pred CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcCEEEEecChhhccCCc
Confidence 445799999999999999999999999999999999998663 479999999876432 23467999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
+.||+.+....+ ........+.++++++.+++.+..++.++ .||+|||||++||++|+.+|++++|||||+|
T Consensus 89 ~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 89 VRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred HHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998765432 12233334567889999999877777654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 877 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 9999999999999998776 899999999975 56788999999985 899998885
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=329.83 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=174.4
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--CC-ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~g~ 771 (1293)
++++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|.
T Consensus 5 l~~~nl~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (252)
T PRK14256 5 VKLEQLNVHF-------------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT 71 (252)
T ss_pred EEEEEEEEEe-------------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCE
Confidence 5667766543 34569999999999999999999999999999999999754 21 24799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 842 (1293)
++.. ...++.++|++|++.+++.+|++||+.+..... .....++..++++++++.+++.+ ..++.
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (252)
T PRK14256 72 DIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSN---- 145 (252)
T ss_pred EcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCC----
Confidence 7632 234567999999999999999999998754322 11123333445788899999854 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+
T Consensus 146 -~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T PRK14256 146 -AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM 222 (252)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999975 689999999975 56688999999974
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 223 -G~i~~~~~~ 231 (252)
T PRK14256 223 -GDLVECGET 231 (252)
T ss_pred -CEEEEeCCH
Confidence 899998885
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=346.18 Aligned_cols=191 Identities=25% Similarity=0.405 Sum_probs=166.6
Q ss_pred ceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-------hcccceEEEEccCCCCCCCCCH
Q 000773 725 EVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-------ETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 725 ~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998763 47999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000773 798 KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgL 877 (1293)
+||+.+... ....++++++++.+|+.+..++.++ +|||||||||+|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987531 0112357899999999888877655 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 878 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 878 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |+++..|+++
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999999865 899999999975 67788999999985 8999999863
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=334.38 Aligned_cols=210 Identities=24% Similarity=0.369 Sum_probs=170.6
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC------ceeEEEEEcCccCCh---hcccceEEEEcc
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG------YIEGDIRISGFPKKQ---ETFARISGYCEQ 787 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~------~~~G~i~~~g~~~~~---~~~~~~~~~v~q 787 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+... ..+++.++|++|
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q 90 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQ 90 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecc
Confidence 34567999999999999999999999999999999999976532 127999999987532 234456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh----
Q 000773 788 NDIHSPQVTVKESLIYSAFLRLA-KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELV---- 862 (1293)
Q Consensus 788 ~~~~~~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~---- 862 (1293)
++..++.+||+||+.+....... .....++..++++++++.+|+.+..++.+. .|||||||||+||++|+
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~~~ 165 (272)
T PRK13547 91 AAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT-----TLSGGELARVQFARVLAQLWP 165 (272)
T ss_pred cCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcccc
Confidence 98766779999999875321110 011112233457889999999877776544 79999999999999999
Q ss_pred -----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 863 -----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 863 -----~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.+
T Consensus 166 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 166 PHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred ccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 599999999999999999999999999999876 899999999975 56678999999985 8999998864
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=320.19 Aligned_cols=209 Identities=21% Similarity=0.329 Sum_probs=173.3
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC-C-C-ceeEEEEEcCccCC---hh---c-ccceEEEEccC
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT-G-G-YIEGDIRISGFPKK---QE---T-FARISGYCEQN 788 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~-~-~-~~~G~i~~~g~~~~---~~---~-~~~~~~~v~q~ 788 (1293)
..++++||||++++||++||+|.|||||||+.++|.|..+ + + ..+|+|.++|.++. ++ . +.+.+++++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4579999999999999999999999999999999999765 2 3 35689999998642 22 1 23579999999
Q ss_pred C--CCCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 789 D--IHSPQVTVKESLIYSAFLRLAKEV-SKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 789 ~--~~~~~lTv~e~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
+ .+.|.+||.+.+.-....+. .. .+++..+++.++++.+|+.+-....-. .+.+|||||||||.||.||+.+|
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~--YPhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKS--YPHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhh--CCcccCCcHHHHHHHHHHHhCCC
Confidence 6 57899999988765544322 22 355666788999999999864322222 23489999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
++||.||||++||...+.+|+++|+++.+ .|.++|++|||+. -+.+.+|||.||.. |++++.|+.+
T Consensus 173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYa-G~iVE~g~~~ 239 (316)
T COG0444 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYA-GRIVEEGPVE 239 (316)
T ss_pred CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEEC-cEEEEeCCHH
Confidence 99999999999999999999999999986 4999999999986 47889999999985 9999999974
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=334.33 Aligned_cols=215 Identities=23% Similarity=0.347 Sum_probs=177.8
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
-+.++|+++... .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~-----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYP-----------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcC-----------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 367777776431 0235699999999999999999999999999999999998663 479999999876
Q ss_pred Ch---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000773 774 KQ---ETFARISGYCEQNDI-HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 849 (1293)
.. ..+++.++|++|++. .++.+||+||+.+..... ....++...+++++++.+|+.+..++.++ .|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCH
Confidence 43 234567999999974 677899999998764322 12334444567899999999887777654 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEE
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIY 928 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~ 928 (1293)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++ ++ ..+|++++|.+ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999776 589999999976 34 57999999975 89998
Q ss_pred eCCC
Q 000773 929 SGPL 932 (1293)
Q Consensus 929 ~g~~ 932 (1293)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=338.68 Aligned_cols=222 Identities=16% Similarity=0.218 Sum_probs=175.5
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC--CceeEEEEEcCcc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIRISGFP 772 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~--~~~~G~i~~~g~~ 772 (1293)
++++|++...... .+.+.+|+||||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 5677776654321 1235699999999999999999999999999999999997642 2357999999987
Q ss_pred CCh---hc----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCccc---ccc
Q 000773 773 KKQ---ET----FARISGYCEQNDI--HSPQVTVKESLIYSAFLRLAKE---VSKEDKIIFVEEVMDLVELESL---KDA 837 (1293)
Q Consensus 773 ~~~---~~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~---~~~ 837 (1293)
+.. .. +++.++||+|++. +.|.+||.+++........... ...++..+++.++++.+||.+. .++
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 532 11 1346999999975 6788999999975422111000 1112334567899999999753 344
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhH
Q 000773 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 916 (1293)
Q Consensus 838 ~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 916 (1293)
.+ .+|||||||||+||+||+.+|++|+|||||+|||+.++.+++++|+++.++ |.|||++||+++ .+.+.+|+
T Consensus 155 ~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 FP-----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred Cc-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 43 479999999999999999999999999999999999999999999999875 899999999975 46678999
Q ss_pred hheeecCcEEEEeCCC
Q 000773 917 LLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 917 v~~l~~~G~~~~~g~~ 932 (1293)
+++|.+ |++++.|+.
T Consensus 229 i~vm~~-G~ive~g~~ 243 (330)
T PRK15093 229 INVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEC-CEEEEECCH
Confidence 999985 999999985
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.06 Aligned_cols=208 Identities=27% Similarity=0.368 Sum_probs=171.6
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 68 (241)
T PRK14250 4 IEFKEVSYSS-------------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIK 68 (241)
T ss_pred EEEEeEEEEe-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5666766543 34569999999999999999999999999999999999865 35799999998753
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000773 775 Q---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgG 850 (1293)
. ...++.++|++|++.+++ .||+||+.+....+ . . ...++.++++.+|+. +..++.+ ..||||
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G 135 (241)
T PRK14250 69 TIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDV-----KNLSGG 135 (241)
T ss_pred hcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCc-----ccCCHH
Confidence 2 234567999999998886 69999987643221 1 1 123467889999996 4555544 379999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..
T Consensus 136 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (241)
T PRK14250 136 EAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEY 213 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 999999999999999999999999999999999999999998764 899999999975 56778999999985 899988
Q ss_pred CCC
Q 000773 930 GPL 932 (1293)
Q Consensus 930 g~~ 932 (1293)
|++
T Consensus 214 ~~~ 216 (241)
T PRK14250 214 AKT 216 (241)
T ss_pred CCH
Confidence 875
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=316.43 Aligned_cols=189 Identities=57% Similarity=0.944 Sum_probs=158.6
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++..... .+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~ 74 (192)
T cd03232 4 LTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD 74 (192)
T ss_pred EEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH
Confidence 5677877655310 0124699999999999999999999999999999999996432245899999998764
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000773 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKR 854 (1293)
Q Consensus 775 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqr 854 (1293)
...++.++|++|++.+++.+|++||+.+.... + +||||||||
T Consensus 75 -~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qr 116 (192)
T cd03232 75 -KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKR 116 (192)
T ss_pred -HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHH
Confidence 33456799999999999999999999864210 0 399999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 855 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 855 v~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++.++.+.+|++++|.++|++++.|
T Consensus 117 v~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999999999887799999999998634678899999997548998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=337.01 Aligned_cols=219 Identities=19% Similarity=0.310 Sum_probs=174.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.+.++|+++...... ...+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 367788876542100 0013599999999999999999999999999999999998763 479999999875
Q ss_pred C--------hhcccceEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000773 774 K--------QETFARISGYCEQNDIH-SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPG 843 (1293)
Q Consensus 774 ~--------~~~~~~~~~~v~q~~~~-~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~ 843 (1293)
. ....++.++|++|++.. +...||+||+.+..... ....++..++++++++.+++. +..++.++
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~--- 149 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPF--- 149 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChh---
Confidence 2 12345679999999732 23469999998764321 123344445678899999994 56666544
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+
T Consensus 150 --~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 150 --ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 79999999999999999999999999999999999999999999998764 899999999975 56788999999985
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 899988875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=325.62 Aligned_cols=199 Identities=26% Similarity=0.373 Sum_probs=170.6
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHH
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVTVKES 800 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~ 800 (1293)
+|+|+|+++++||+++|+||||||||||+++|+|..+ +..|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 8999999999999999999999999999999999866 3579999999876431 234579999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000773 801 LIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880 (1293)
Q Consensus 801 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~ 880 (1293)
+.+..... .....+..+.+.++++.+|+.+..++.+. .||||||||++||+||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764322 12233344457889999999887777654 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 881 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 881 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998765 899999999975 56778999999985 899988875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=328.24 Aligned_cols=221 Identities=21% Similarity=0.237 Sum_probs=176.5
Q ss_pred ceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC---CceeEEEEE
Q 000773 692 PLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIRI 768 (1293)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~ 768 (1293)
+..+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~-------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (267)
T PRK14237 18 EIALSTKDLHVYY-------------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84 (267)
T ss_pred CeEEEEeeEEEEE-------------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence 3457788887654 345699999999999999999999999999999999997642 145899999
Q ss_pred cCccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000773 769 SGFPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPG 843 (1293)
Q Consensus 769 ~g~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 843 (1293)
+|.+... ...++.++|++|++.+++ .||+||+.+..... .....++...++.++++.+++.+..+.... ..
T Consensus 85 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 160 (267)
T PRK14237 85 RGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-KS 160 (267)
T ss_pred CCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-CC
Confidence 9987632 123567999999988887 59999998764321 112233344567888999998532111111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||+++ ++.+.+|++++|.+
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~- 237 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL- 237 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999986 4799999999975 57788999999975
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 238 G~i~~~g~~ 246 (267)
T PRK14237 238 GDLIEYDKT 246 (267)
T ss_pred CEEEEeCCH
Confidence 899999885
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=329.08 Aligned_cols=209 Identities=20% Similarity=0.284 Sum_probs=166.7
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--CC-ceeEEEEEcCccCCh-----hcccceEEEEccCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIRISGFPKKQ-----ETFARISGYCEQND 789 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~ 789 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|.++.. ...++.++|++|++
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 34569999999999999999999999999999999999754 21 357999999987532 12456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
.+++. ||+||+.+....+.. ....++....++++++.+|+.+....... ..+.+||||||||++|||+|+.+|++|+
T Consensus 96 ~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lll 172 (251)
T PRK14244 96 NPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLL 172 (251)
T ss_pred ccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88886 999999876433211 11222333457788999998652111111 1234799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 173 lDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 173 MDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999985 4899999999975 56778999999985 899988875
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=282.97 Aligned_cols=212 Identities=25% Similarity=0.344 Sum_probs=179.5
Q ss_pred ccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC------h---hcccce
Q 000773 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK------Q---ETFARI 781 (1293)
Q Consensus 711 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~------~---~~~~~~ 781 (1293)
++.+..||..++|.||+++.+.||.+.++||||||||||++.|.-... +.+|+..|.|...+ . ...++.
T Consensus 6 ~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~ 83 (242)
T COG4161 6 NGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRDLRRN 83 (242)
T ss_pred cccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEecccccccccCccHHHHHHHHHh
Confidence 455567788999999999999999999999999999999999986544 34788888775321 1 235678
Q ss_pred EEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000773 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVEL 861 (1293)
Q Consensus 782 ~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL 861 (1293)
+|+|+|+-.++|.+||.|||.-+. ++. ...++++.+.++.++++.+.|.+.+|+..- .|||||+|||+|||||
T Consensus 84 vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~pl-----hlsggqqqrvaiaral 156 (242)
T COG4161 84 VGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPL-----HLSGGQQQRVAIARAL 156 (242)
T ss_pred hhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCce-----ecccchhhhHHHHHHH
Confidence 999999999999999999996532 232 235677777888999999999999998754 6999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 862 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 862 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+.+|++|++||||+.|||+-..+++++|++++..|.|-++++|..+ -....+.+++.|. .|+|++.|+.+
T Consensus 157 mmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme-~g~ive~g~a~ 226 (242)
T COG4161 157 MMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYME-NGHIVEQGDAS 226 (242)
T ss_pred hcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeee-cCeeEeecchh
Confidence 9999999999999999999999999999999999999999999754 2345578888887 59999999854
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=326.20 Aligned_cols=196 Identities=23% Similarity=0.315 Sum_probs=166.2
Q ss_pred ceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHH
Q 000773 725 EVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVTVKESLIY 803 (1293)
Q Consensus 725 ~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~ 803 (1293)
||||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 8999999999999999999999999999999866 3579999999875431 124569999999999999999999976
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 000773 804 SAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883 (1293)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~ 883 (1293)
...... ... +....+++++++.+|+.+..++.+. .||||||||++||+|++.+|++++|||||+|||+.++.
T Consensus 95 ~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPGL--KLN-AAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred cccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 532111 111 2234557899999999887777765 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 884 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 884 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
.+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999998764 899999999975 56778999999985 899998875
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=334.41 Aligned_cols=219 Identities=21% Similarity=0.297 Sum_probs=177.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++..+... ..+++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecc
Confidence 56777776542100 00135699999999999999999999999999999999998763 5799999998764
Q ss_pred h----hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000773 775 Q----ETFARISGYCEQNDI-HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 775 ~----~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 849 (1293)
. ...++.+||++|++. .+...||.|++.|..... .....+..++++++++.+||.+..++.++ +|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 147 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLSG 147 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCH
Confidence 2 234567999999974 233469999998864322 22344445568899999999988887765 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEE
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIY 928 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~ 928 (1293)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|.+ |++++
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~~ 224 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 999999999976 344 4999999985 89999
Q ss_pred eCCCC
Q 000773 929 SGPLG 933 (1293)
Q Consensus 929 ~g~~~ 933 (1293)
.|+++
T Consensus 225 ~g~~~ 229 (280)
T PRK13633 225 EGTPK 229 (280)
T ss_pred ecCHH
Confidence 98853
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=342.44 Aligned_cols=214 Identities=27% Similarity=0.501 Sum_probs=178.4
Q ss_pred cceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcC
Q 000773 691 TPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 770 (1293)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 770 (1293)
.++.+..+|+++..+ +++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 345666678877653 234799999999999999999999999999999999998874 589999999
Q ss_pred ccCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc------cccccC
Q 000773 771 FPKK---QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK------DAIVGL 841 (1293)
Q Consensus 771 ~~~~---~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~------~~~~~~ 841 (1293)
.+.. ...+++.++||+|++.+++. |++||+.++. .+.++++ +.++++..|+.+.. |+.+|+
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~-----~~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR-----PDASDEE----IIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC-----CcCCHHH----HHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 45688999999999998875 9999998742 1223333 56777777776654 445553
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
+.++|||||+|||++||||+.+++++++||||++||.++.+.|++.|.++++ ++|||++||++ .....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEec
Confidence 4578999999999999999999999999999999999999999999999986 59999999986 4667899999998
Q ss_pred cCcEEEEeCCCC
Q 000773 922 RGGQVIYSGPLG 933 (1293)
Q Consensus 922 ~~G~~~~~g~~~ 933 (1293)
+ |+++..|..+
T Consensus 529 ~-G~l~~~g~~~ 539 (559)
T COG4988 529 N-GRLVEQGTHE 539 (559)
T ss_pred C-CceeccCCHH
Confidence 5 8999999864
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=328.43 Aligned_cols=215 Identities=22% Similarity=0.246 Sum_probs=173.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g 770 (1293)
.+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWY-------------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEE-------------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 35667776543 3456999999999999999999999999999999999975431 2579999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 841 (1293)
.++.. ...++.++|++|++.+++ +|++||+.+...... ....++...+++++++.+++.+ ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 123567999999998887 899999987653321 1123333455778899998742 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
...||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 347999999999999999999999999999999999999999999999876 689999999975 5677899999997
Q ss_pred cCcEEEEeCCC
Q 000773 922 RGGQVIYSGPL 932 (1293)
Q Consensus 922 ~~G~~~~~g~~ 932 (1293)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 899998885
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=331.67 Aligned_cols=223 Identities=18% Similarity=0.261 Sum_probs=176.8
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++....+.. ....+.+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 577777765521100 0001134699999999999999999999999999999999998763 5799999998764
Q ss_pred h---hcccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCC
Q 000773 775 Q---ETFARISGYCEQNDI--HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLS 848 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lS 848 (1293)
. ...++.++|++|++. +++.+|+.|++.+...... .....+..+.++++++.+|+. +..++.+. .||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPH-----MLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCch-----hcC
Confidence 2 122356999999975 5788899999987644321 122333345678999999994 55555443 799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEE
Q 000773 849 IEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927 (1293)
Q Consensus 849 gGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~ 927 (1293)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 56677999999985 8999
Q ss_pred EeCCC
Q 000773 928 YSGPL 932 (1293)
Q Consensus 928 ~~g~~ 932 (1293)
..|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=329.83 Aligned_cols=214 Identities=21% Similarity=0.282 Sum_probs=173.1
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--CC-ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~g~ 771 (1293)
+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.++|.
T Consensus 13 l~i~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~ 79 (259)
T PRK14274 13 YQINGMNLWY-------------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGS 79 (259)
T ss_pred EEEeeEEEEE-------------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCE
Confidence 6777776543 34569999999999999999999999999999999999754 21 14799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 842 (1293)
+... ...++.+||++|++.+++. ||+||+.+....+ .....++..++++++++.+++.+ ..++.
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~---- 152 (259)
T PRK14274 80 NILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ---- 152 (259)
T ss_pred EccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCC----
Confidence 7631 2345679999999988875 9999998764322 11123333455778899998853 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
..+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+
T Consensus 153 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~ 229 (259)
T PRK14274 153 -ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM 229 (259)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999865 799999999975 56788999999975
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|+++..|++
T Consensus 230 -G~i~~~g~~ 238 (259)
T PRK14274 230 -GELVECNDT 238 (259)
T ss_pred -CEEEEECCH
Confidence 899999885
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=360.86 Aligned_cols=123 Identities=26% Similarity=0.344 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CEEE
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVANP---SIIF 869 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p---~ill 869 (1293)
++||.|++.|...+. + .....+.++.+||.. ..++.+. .||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988865432 1 122467899999976 3455543 79999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee-----cCcEEEEeCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGQVIYSGPL 932 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~~G~~~~~g~~ 932 (1293)
|||||+|||+.+...+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999864 457899999994 46999999985
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=331.59 Aligned_cols=214 Identities=21% Similarity=0.248 Sum_probs=172.0
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC---CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~~g 770 (1293)
.+.++|+++.. +++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISY-------------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEE-------------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 46778877654 335699999999999999999999999999999999997542 13579999999
Q ss_pred ccCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000773 771 FPKK-----QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGL 841 (1293)
Q Consensus 771 ~~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 841 (1293)
.+.. ....++.++|++|++.+++. ||+||+.+.+..+. ... +..++++++++.+++. +..++.
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~--- 151 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES--- 151 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC---
Confidence 8753 12345679999999988884 99999988654321 112 2233467788888774 233433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++...+|++++|.
T Consensus 152 --~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 152 --GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 347999999999999999999999999999999999999999999999864 799999999975 5778899999998
Q ss_pred c----------CcEEEEeCCC
Q 000773 922 R----------GGQVIYSGPL 932 (1293)
Q Consensus 922 ~----------~G~~~~~g~~ 932 (1293)
+ .|++++.|++
T Consensus 228 ~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 228 AEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccccccceEEEeCCH
Confidence 5 2678888875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=330.94 Aligned_cols=216 Identities=24% Similarity=0.308 Sum_probs=177.6
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++.... +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 3677777765421 123589999999999999999999999999999999998763 579999999876
Q ss_pred Ch---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000773 774 KQ---ETFARISGYCEQNDI-HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 849 (1293)
.. ...++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..++.++ .|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPN-----ALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcc-----cCCH
Confidence 42 234567999999975 677889999998764322 12333344567889999999887776654 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEE
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIY 928 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~ 928 (1293)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++. .+|++++|.+ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 899999999986 454 4999999985 89999
Q ss_pred eCCCC
Q 000773 929 SGPLG 933 (1293)
Q Consensus 929 ~g~~~ 933 (1293)
.|+.+
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 98864
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=320.52 Aligned_cols=200 Identities=25% Similarity=0.359 Sum_probs=165.7
Q ss_pred cccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCC
Q 000773 710 MKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQND 789 (1293)
Q Consensus 710 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~ 789 (1293)
+++++++++++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+..
T Consensus 25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~ 93 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGG 93 (224)
T ss_pred hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccc
Confidence 4566677888899999999999999999999999999999999999866 358999999976421 11123
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
.+.+.+||+||+.+...... ....+..++++++++.+++.+..++.++ +||||||||++|||+|+.+|++++
T Consensus 94 ~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~lll 165 (224)
T cd03220 94 GFNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILL 165 (224)
T ss_pred cCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEE
Confidence 45578999999987654321 2233334457889999999887777655 799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 166 lDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999998777899999999975 56678999999975 8887754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=332.65 Aligned_cols=216 Identities=25% Similarity=0.337 Sum_probs=177.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCc-eeEEEEEcCccC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIRISGFPK 773 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~-~~G~i~~~g~~~ 773 (1293)
++++|+++..+. ..+.+|++||+++++||++||+||||||||||+++|+|..++.. ..|+|.++|.+.
T Consensus 6 l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 6 VEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred EEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 677777765421 12459999999999999999999999999999999999765321 138999999876
Q ss_pred Ch---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000773 774 KQ---ETFARISGYCEQNDI-HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSg 849 (1293)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++..++++++++.+||.+..++.+. .|||
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~ 146 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPA-----NLSG 146 (282)
T ss_pred CcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCH
Confidence 43 234567999999974 677899999998754322 23445555668899999999887777654 7999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEE
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIY 928 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~ 928 (1293)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+ ..+|++++|.+ |++++
T Consensus 147 G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~~ 223 (282)
T PRK13640 147 GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLLA 223 (282)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999975 34 67999999975 89999
Q ss_pred eCCC
Q 000773 929 SGPL 932 (1293)
Q Consensus 929 ~g~~ 932 (1293)
.|++
T Consensus 224 ~g~~ 227 (282)
T PRK13640 224 QGSP 227 (282)
T ss_pred eCCH
Confidence 9985
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=328.10 Aligned_cols=214 Identities=25% Similarity=0.295 Sum_probs=171.5
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--CC-ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~g~ 771 (1293)
+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~ 72 (252)
T PRK14239 6 LQVSDLSVYY-------------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72 (252)
T ss_pred EEEEeeEEEE-------------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCE
Confidence 5677776543 34569999999999999999999999999999999999632 21 24799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 842 (1293)
+... ..+++.++|++|++.+++ +||+||+.+....+. ....+.....++++++.+++.+ ..++.
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (252)
T PRK14239 73 NIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS---- 145 (252)
T ss_pred ECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC----
Confidence 7631 124567999999998887 899999987643321 1122223345678888888743 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+
T Consensus 146 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~ 222 (252)
T PRK14239 146 -ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD 222 (252)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999865 699999999975 57788999999985
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 223 -G~i~~~g~~ 231 (252)
T PRK14239 223 -GDLIEYNDT 231 (252)
T ss_pred -CEEEEeCCH
Confidence 899998875
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=327.14 Aligned_cols=214 Identities=22% Similarity=0.294 Sum_probs=172.0
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~ 771 (1293)
+.++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 4 ISVKDLDLFY-------------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred EEEEEEEEEE-------------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 5666766543 3456999999999999999999999999999999999964321 24799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 842 (1293)
+... ...++.++|++|++.+++ +|++||+.+....+. ....++..+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 143 (250)
T PRK14240 71 DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS---- 143 (250)
T ss_pred EccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC----
Confidence 7642 124567999999998887 899999988643321 1123333455778888888742 23443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+
T Consensus 144 -~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~ 220 (250)
T PRK14240 144 -ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLN 220 (250)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999854 799999999975 56778999999985
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 221 -G~i~~~~~~ 229 (250)
T PRK14240 221 -GEIVEFGDT 229 (250)
T ss_pred -CEEEEeCCH
Confidence 899988874
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=362.35 Aligned_cols=210 Identities=26% Similarity=0.350 Sum_probs=176.2
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+|+||++++||++||+|||||||||||++|+|..++ .+|+|.++|.+.... ..++.++|++|++.++
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (501)
T PRK10762 14 FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLI 91 (501)
T ss_pred eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCCCCHHHHHhCCEEEEEcchhcc
Confidence 3446799999999999999999999999999999999998763 479999999875321 1245699999999999
Q ss_pred CCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000773 793 PQVTVKESLIYSAFLRL-AKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlD 871 (1293)
+.+||+||+.+....+. ......++..++++++++.+|+.+..++.++ .|||||||||+||+||+.+|++|+||
T Consensus 92 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLD 166 (501)
T PRK10762 92 PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMD 166 (501)
T ss_pred CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999987543211 0112233334567899999999988777765 69999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCC
Q 000773 872 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRN 935 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~ 935 (1293)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |+++..|+.++.
T Consensus 167 EPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~~ 228 (501)
T PRK10762 167 EPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREVADL 228 (501)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCcC
Confidence 999999999999999999999877999999999975 57788999999985 899999987643
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=322.87 Aligned_cols=201 Identities=23% Similarity=0.314 Sum_probs=166.0
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC--ceeEEEEEcCccCChhcc-cceEEEEccCCC--CCCCCC
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG--YIEGDIRISGFPKKQETF-ARISGYCEQNDI--HSPQVT 796 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~~v~q~~~--~~~~lT 796 (1293)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999986531 157999999987654322 357999999984 567899
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE---SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
+.|++.+...... ...++..++++++++.+++. +..++.+ ..|||||||||+|||||+.+|++|+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999976543221 11233345678999999997 3445544 37999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999975 56678999999975 899988875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=300.41 Aligned_cols=193 Identities=21% Similarity=0.361 Sum_probs=167.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcccc----ceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ----KTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~----~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++++|||||||||.+.++.|+++|+ +|+|.+||.+++..... .-+||+||++..|..|||+|||.-..+.+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~ 108 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence 47899999999999999999999999 99999999999876543 347999999999999999999987766442
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
...+ ..+.+...+.+|++|+|.|.++++-.. ||||||||+.||
T Consensus 109 ~d~~--------------------------------~~~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EIA 151 (243)
T COG1137 109 KDLK--------------------------------KAERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEIA 151 (243)
T ss_pred cchh--------------------------------HHHHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHHH
Confidence 1100 001233467899999999999887654 999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|||+.+|++++||||++|+||.+..+|.+.++.+.. +|.-|++| .|...|....|||..++++|++..+|+++++.+
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLIT-DHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLIT-DHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEc-cccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999999999999999999999975 68999986 667789999999999999999999999999864
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=313.01 Aligned_cols=190 Identities=50% Similarity=0.853 Sum_probs=159.9
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCC--CCCceeEEEEEcCc
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK--TGGYIEGDIRISGF 771 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~--~~~~~~G~i~~~g~ 771 (1293)
.++++++++...... +...+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 467788776553100 001256999999999999999999999999999999999986 5 45899999998
Q ss_pred cCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000773 772 PKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQ 851 (1293)
Q Consensus 772 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGe 851 (1293)
+......++.++|++|++.+++.+|++||+.+..... .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445677999999999999999999997532100 399999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 852 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 852 rqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
|||++|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++.++.+.+|++++|.+ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986457778999999985 8887654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=367.48 Aligned_cols=215 Identities=28% Similarity=0.460 Sum_probs=177.1
Q ss_pred cceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcC
Q 000773 691 TPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 770 (1293)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 770 (1293)
..-.++++|++|+... ++..+|+|+|++|+|||.+||+|+||||||||+|+|.|..++ .+|+|.+||
T Consensus 468 ~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~dg 534 (709)
T COG2274 468 LQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLDG 534 (709)
T ss_pred cCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECC
Confidence 3457899999988753 223699999999999999999999999999999999998774 589999999
Q ss_pred ccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------ccccccccc
Q 000773 771 FPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-------ESLKDAIVG 840 (1293)
Q Consensus 771 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-------~~~~~~~~~ 840 (1293)
.+... ..+|+.+|||+|++.++. -|++||+.+.. ...+.++ +.++++..|. ..-.|+.+|
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e~----i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDEE----IIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHHH----HHHHHHHhCcHHHHHhcccccccccc
Confidence 98643 567899999999998875 59999997642 2233333 2333333333 334567777
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhhee
Q 000773 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 841 ~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
+ +..+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|+++. +|+|+|+++|+++ ..+.+|++++|
T Consensus 605 E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 605 E-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred c-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEc
Confidence 5 345899999999999999999999999999999999999999999999985 4799999999864 78899999999
Q ss_pred ecCcEEEEeCCCC
Q 000773 921 KRGGQVIYSGPLG 933 (1293)
Q Consensus 921 ~~~G~~~~~g~~~ 933 (1293)
++ |+++.+|+.+
T Consensus 681 ~~-Gkiv~~gs~~ 692 (709)
T COG2274 681 DQ-GKIVEQGSHE 692 (709)
T ss_pred cC-CceeccCCHH
Confidence 75 9999999964
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=325.99 Aligned_cols=204 Identities=23% Similarity=0.244 Sum_probs=166.2
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCccCCh----hcccceEEEEccCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFPKKQ----ETFARISGYCEQNDI 790 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~ 790 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 14 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 4456999999999999999999999999999999999975531 357999999987531 234567999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 791 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
+++ .||.||+.+..... .....+...+++.+.++.+++.+ ..++. ..+|||||||||+|||||+.+|+
T Consensus 94 ~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~ 165 (249)
T PRK14253 94 PFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSH-----AFGLSGGQQQRLCIARTIAMEPD 165 (249)
T ss_pred cCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcC-----cccCCHHHHHHHHHHHHHHcCCC
Confidence 887 89999998764322 11122233345677888888753 23333 34799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 166 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 228 (249)
T PRK14253 166 VILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDT 228 (249)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999875 589999999975 56778999999985 899998874
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=326.11 Aligned_cols=205 Identities=24% Similarity=0.292 Sum_probs=166.4
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCc---eeEEEEEcCccCCh-----hcccceEEEEccCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY---IEGDIRISGFPKKQ-----ETFARISGYCEQND 789 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~---~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~ 789 (1293)
+++.+|+|+||++++||+++|+||||||||||+|+|+|..++.+ .+|+|.++|.+... ..+++.++|++|++
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 34579999999999999999999999999999999999765322 37999999987532 13456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
.+++.+|+.||+.+...... ....++..+.++++++.+++. +..++. ++.||||||||++||++|+.+|
T Consensus 95 ~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p 167 (252)
T PRK14272 95 NPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP-----ATGLSGGQQQRLCIARALAVEP 167 (252)
T ss_pred ccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC-----cccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999987543221 112233334566777777653 233443 3479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|.+ |++++.|+.
T Consensus 168 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 168 EILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999864 799999999975 56678999999985 899998875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=327.28 Aligned_cols=215 Identities=22% Similarity=0.284 Sum_probs=173.8
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC-c--eeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG-Y--IEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~-~--~~G~i~~~g~ 771 (1293)
+.++|+++.. +++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|.
T Consensus 8 l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 8 IKVKDLSFYY-------------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred EEEEEEEEEE-------------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 5677776543 3456999999999999999999999999999999999975532 2 4799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 842 (1293)
+... ...++.++|++|++.+++ +||+||+.+....+. ...+.+..+.++++++.+++. +..++.
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 147 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS---- 147 (259)
T ss_pred eccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC----
Confidence 7532 223567999999998887 899999987654321 112233334577888988884 233333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+
T Consensus 148 -~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~ 224 (259)
T PRK14260 148 -ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFST 224 (259)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEec
Confidence 347999999999999999999999999999999999999999999999865 699999999986 67788999999973
Q ss_pred ----CcEEEEeCCC
Q 000773 923 ----GGQVIYSGPL 932 (1293)
Q Consensus 923 ----~G~~~~~g~~ 932 (1293)
+|++++.|++
T Consensus 225 ~~~~~G~i~~~~~~ 238 (259)
T PRK14260 225 DESRIGQMVEFGVT 238 (259)
T ss_pred cCCCCceEEEeCCH
Confidence 4899999885
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=362.34 Aligned_cols=209 Identities=26% Similarity=0.335 Sum_probs=174.8
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+|+||++++||+++|+||||||||||+|+|+|...+ .+|+|.++|.+.... ..++.++|++|++.++
T Consensus 15 ~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~ 92 (510)
T PRK09700 15 FGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYNKLDHKLAAQLGIGIIYQELSVI 92 (510)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEECCCCCHHHHHHCCeEEEeeccccc
Confidence 3456799999999999999999999999999999999998753 479999999876431 1235699999999999
Q ss_pred CCCCHHHHHHHHHHhc--CCC--CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 793 PQVTVKESLIYSAFLR--LAK--EVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~--~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
+.+||+||+.+..... ... ....++...+++++++.+|+.+..++.++ +|||||||||+||+||+.+|++|
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~ll 167 (510)
T PRK09700 93 DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVI 167 (510)
T ss_pred CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999998643211 000 01223334568899999999888787765 79999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~ 934 (1293)
+|||||+|||+.++..+++.|++++++|+|||++||+++ .+...+|++++|.+ |++++.|++++
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 231 (510)
T PRK09700 168 IMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMVSD 231 (510)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecchhh
Confidence 999999999999999999999999878999999999975 56678999999985 89999998754
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=325.86 Aligned_cols=203 Identities=26% Similarity=0.333 Sum_probs=166.4
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCccCCh-----hcccceEEEEccCCC
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFPKKQ-----ETFARISGYCEQNDI 790 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~ 790 (1293)
++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+... ...++.++|++|++.
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 456999999999999999999999999999999999975421 257999999987532 123567999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000773 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866 (1293)
Q Consensus 791 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ 866 (1293)
+++ .|++||+.+...... ....+...+.++++++.+++.+ ..++. ..+||||||||++||+||+.+|+
T Consensus 95 ~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~Gq~qr~~la~al~~~p~ 166 (250)
T PRK14262 95 PFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKP-----GTRLSGGQQQRLCIARALAVEPE 166 (250)
T ss_pred cCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCC-----hhhcCHHHHHHHHHHHHHhCCCC
Confidence 887 899999987643321 1122233345678888888854 23333 34799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 167 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 167 VILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999999999999999999999999865 799999999975 57788999999985 899988875
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=370.77 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=107.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000773 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-KDAIVGLPGVTGLSIEQRKRLTIAVELV---ANPS 866 (1293)
Q Consensus 791 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGerqrv~ia~aL~---~~p~ 866 (1293)
.+...||.|+|.+...-........++..+++ ++++.+||.+. .++.+. +||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999876542211111223333445 57889999875 566544 79999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee-----cCcEEEEeCCCC
Q 000773 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGQVIYSGPLG 933 (1293)
Q Consensus 867 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~~G~~~~~g~~~ 933 (1293)
+++|||||+|||+.+...+++.|++++++|.|||+++|+++ ..+.+|++++|. ++|+++..|+++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~--~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH--VVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999975 448899999995 358999999864
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=327.08 Aligned_cols=214 Identities=26% Similarity=0.312 Sum_probs=172.2
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCcc--
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP-- 772 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~-- 772 (1293)
++++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 7 l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 71 (258)
T PRK11701 7 LSVRGLTKLY-------------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDGQ 71 (258)
T ss_pred EEEeeeEEEc-------------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCcccc
Confidence 5677776543 345699999999999999999999999999999999998663 47999999986
Q ss_pred ---CChh---c----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccc
Q 000773 773 ---KKQE---T----FARISGYCEQNDI--HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIV 839 (1293)
Q Consensus 773 ---~~~~---~----~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~ 839 (1293)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+....+.++++.+++.+ ..++.+
T Consensus 72 ~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK11701 72 LRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDLP 149 (258)
T ss_pred ccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCCC
Confidence 4321 1 2346999999974 6778899999876432111 1122233445788999999963 555544
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhh
Q 000773 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELL 918 (1293)
Q Consensus 840 ~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~ 918 (1293)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+...+|+++
T Consensus 150 -----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~ 223 (258)
T PRK11701 150 -----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLL 223 (258)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 379999999999999999999999999999999999999999999998765 899999999975 4666899999
Q ss_pred eeecCcEEEEeCCC
Q 000773 919 LLKRGGQVIYSGPL 932 (1293)
Q Consensus 919 ~l~~~G~~~~~g~~ 932 (1293)
+|.+ |++++.|+.
T Consensus 224 ~l~~-g~i~~~~~~ 236 (258)
T PRK11701 224 VMKQ-GRVVESGLT 236 (258)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 899998875
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=311.02 Aligned_cols=180 Identities=26% Similarity=0.329 Sum_probs=151.0
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-----hcccceEEEEccCCC-C
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-----ETFARISGYCEQNDI-H 791 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~-~ 791 (1293)
+++.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. .
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 345699999999999999999999999999999999998763 47999999987531 123567999999973 3
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 000773 792 SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMD 871 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlD 871 (1293)
+...||+||+.+..... ....++..++++++++.+|+.+..++.+. .||||||||++|||||+.+|++++||
T Consensus 81 ~~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 33579999998864322 12333444567899999999887777654 79999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000773 872 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 907 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 907 (1293)
|||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=318.30 Aligned_cols=195 Identities=25% Similarity=0.388 Sum_probs=166.5
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh------cccceEEEEccCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE------TFARISGYCEQNDIHSP 793 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~------~~~~~~~~v~q~~~~~~ 793 (1293)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 569999999999999999999999999999999999765 3589999999875321 24567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
.+|+.||+.+...... ....++...+++++++.+|+.+..++.+. .||+|||||++|||+|+.+|++++||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPH-----NLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988654321 12344445568899999999877776654 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcEE
Q 000773 874 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~ 926 (1293)
|+|||+.++..+.+.|+++++ .|+|||+++|+++ ..+.+|++++|.+ |++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999876 4899999999964 5678999999975 664
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=326.66 Aligned_cols=215 Identities=24% Similarity=0.348 Sum_probs=177.2
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++.... ..++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~ 72 (277)
T PRK13642 5 LEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLT 72 (277)
T ss_pred EEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECC
Confidence 677777765421 012359999999999999999999999999999999999876 35799999998764
Q ss_pred h---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 775 Q---ETFARISGYCEQNDI-HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~-~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
. ...++.+||++|++. .++..||.||+.+..... ....++..++++++++.+|+.+..++.+. .||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 144 (277)
T PRK13642 73 AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPA-----RLSGG 144 (277)
T ss_pred cCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHH
Confidence 3 234567999999974 677889999998754321 12344444567899999999887777644 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|.+ |+++..
T Consensus 145 ~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (277)
T PRK13642 145 QKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIKE 221 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999875 999999999975 34 46999999985 899998
Q ss_pred CCC
Q 000773 930 GPL 932 (1293)
Q Consensus 930 g~~ 932 (1293)
|+.
T Consensus 222 g~~ 224 (277)
T PRK13642 222 AAP 224 (277)
T ss_pred CCH
Confidence 875
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=317.45 Aligned_cols=201 Identities=22% Similarity=0.287 Sum_probs=169.1
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
-+.++|++... +++.+++++||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR-------------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec-------------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 36677776543 345699999999999999999999999999999999998763 479999999876
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000773 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853 (1293)
Q Consensus 774 ~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerq 853 (1293)
.....++.++|++|++.+++.+|++||+.+....+. ... .+.++++++.+++.+..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~---~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RRA---KQMPGSALAIVGLAGYEDTLVR-----QLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---CcH---HHHHHHHHHHcCChhhccCChh-----hCCHHHHH
Confidence 543334568999999999999999999987653321 111 2346788999999877777654 79999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 854 rv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
|++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999986 6788899988875
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=334.12 Aligned_cols=211 Identities=26% Similarity=0.398 Sum_probs=174.7
Q ss_pred eeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCcc
Q 000773 693 LAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 772 (1293)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~ 772 (1293)
-.++|+|++.++. +++++|+++||+|++||.+||+|+|||||||++|+|.+..+ .+|+|.+||.+
T Consensus 350 ~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~d 414 (591)
T KOG0057|consen 350 GSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQD 414 (591)
T ss_pred CcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCee
Confidence 3589999987653 23459999999999999999999999999999999999765 37999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000773 773 KKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLP 842 (1293)
Q Consensus 773 ~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~ 842 (1293)
+++ +..|+.|||||||..+|. -||.+|+.|+. ...+.++ |-++.+..|+.+ -..+.+|+.
T Consensus 415 ik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGer 484 (591)
T KOG0057|consen 415 IKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDEE----VVEACKRAGLHDVISRLPDGYQTLVGER 484 (591)
T ss_pred HhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHHH----HHHHHHHcCcHHHHHhccccchhhHhhc
Confidence 754 467889999999988875 49999998853 2233333 455566666544 334556653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
...|||||||||+||||+++||+|+++|||||.||..+..++++.++.. ..|+|+|++.|+. +....||+|++|++
T Consensus 485 -G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~n 560 (591)
T KOG0057|consen 485 -GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDN 560 (591)
T ss_pred -ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEEC
Confidence 3469999999999999999999999999999999999999999999983 4589999999985 58899999999985
Q ss_pred CcEEEEeCCCC
Q 000773 923 GGQVIYSGPLG 933 (1293)
Q Consensus 923 ~G~~~~~g~~~ 933 (1293)
|++...|+.+
T Consensus 561 -G~v~e~gth~ 570 (591)
T KOG0057|consen 561 -GTVKEYGTHS 570 (591)
T ss_pred -CeeEEeccHH
Confidence 8999999864
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=325.09 Aligned_cols=214 Identities=22% Similarity=0.291 Sum_probs=171.1
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC---CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~~g 770 (1293)
.++++++++.. +++.+|+|+||+|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~-------------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFY-------------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEE-------------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 46777776543 345699999999999999999999999999999999997542 13579999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 841 (1293)
.+... ...++.++|++|++.+++. ||+||+.+....+. ... +..++++++++.+|+.+ ..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87531 2345679999999988875 99999987654321 122 22345788999998853 33443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+...+|+++++.
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 347999999999999999999999999999999999999999999999976 489999999975 5667789976543
Q ss_pred cCcEEEEeCCC
Q 000773 922 RGGQVIYSGPL 932 (1293)
Q Consensus 922 ~~G~~~~~g~~ 932 (1293)
++|+++..|+.
T Consensus 254 ~~G~i~~~g~~ 264 (285)
T PRK14254 254 TGGELVEFDDT 264 (285)
T ss_pred eCCEEEEeCCH
Confidence 35899988874
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=316.35 Aligned_cols=177 Identities=24% Similarity=0.324 Sum_probs=152.2
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~l 795 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+
T Consensus 12 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL 89 (204)
T ss_pred CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchHHhhhheEEeCCccccCcCC
Confidence 445699999999999999999999999999999999998763 47999999987542 23456789999999999999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
|+.||+.+....+. . +..++++++++.+|+.+..++.++ .||||||||++||+||+++|++++|||||+
T Consensus 90 tv~e~l~~~~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 90 TALENLRFYQRLHG--P----GDDEALWEALAQVGLAGFEDVPVR-----QLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred cHHHHHHHHHHhcC--c----cHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999987653321 1 112457889999999877776654 799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000773 876 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 907 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 907 (1293)
|||+.++..+.+.|++++++|+|||++||+++
T Consensus 159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 190 (204)
T PRK13538 159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDL 190 (204)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecChh
Confidence 99999999999999998877899999999975
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=330.78 Aligned_cols=221 Identities=19% Similarity=0.245 Sum_probs=175.7
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC---CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~~g 770 (1293)
.+.++|+++.... +.+.+|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 4788888876531 234699999999999999999999999999999999997532 23579999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHHHcCCcccccccccCCCC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKED-KIIFVEEVMDLVELESLKDAIVGLPGV 844 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~ 844 (1293)
.++.. ...++.++|+||++.+++ .|++||+.|..... ..++++ ..+.+.++++.+++.+-.++.++. ..
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AG 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-Cc
Confidence 98742 234667999999998875 79999999764321 122222 233467788888875332233332 34
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
.+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.+|++++|.+ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 699999999975 45667999999985 8
Q ss_pred EEEEeCCCC
Q 000773 925 QVIYSGPLG 933 (1293)
Q Consensus 925 ~~~~~g~~~ 933 (1293)
+++..|++.
T Consensus 301 ~i~e~g~~~ 309 (329)
T PRK14257 301 WIEEAGETK 309 (329)
T ss_pred EEEEeCCHH
Confidence 999999863
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.10 Aligned_cols=219 Identities=23% Similarity=0.294 Sum_probs=175.1
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g 770 (1293)
.+..+|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGF-------------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEE-------------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 35777776654 3457999999999999999999999999999999999976531 3589999999
Q ss_pred ccCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000773 771 FPKKQ----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTG 846 (1293)
Q Consensus 771 ~~~~~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 846 (1293)
.+... ...++.++|++|++.+++ .|++||+.+..... ...+.++....+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234567999999998888 89999998764322 112333434456788899998653211111 12347
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEE
Q 000773 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926 (1293)
Q Consensus 847 lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~ 926 (1293)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999975 56788999999985 899
Q ss_pred EEeCCC
Q 000773 927 IYSGPL 932 (1293)
Q Consensus 927 ~~~g~~ 932 (1293)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 998885
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=314.67 Aligned_cols=187 Identities=28% Similarity=0.324 Sum_probs=159.0
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ 794 (1293)
++++.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (201)
T cd03231 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTT 87 (201)
T ss_pred eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCC
Confidence 3456799999999999999999999999999999999998763 47999999987532 2345679999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
+|++||+.+.... . ..++++++++.+|+.+..++.+. .||||||||++||+||+.+|++++|||||
T Consensus 88 ~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 88 LSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred cCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999999874211 1 12346889999999887776654 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhhee
Q 000773 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
+|||+.++..+.+.|+++.++|+|+|++||++. +....+++++.+
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999998877999999999975 567777777665
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=323.92 Aligned_cols=215 Identities=22% Similarity=0.279 Sum_probs=174.1
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC---CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~~g 770 (1293)
.++++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFY-------------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEE-------------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 46778887654 234699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~ 841 (1293)
.+... ...++.++|++|++.+++. |++||+.+...... ....++..+.++++++.+++.+ ..++.
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 165 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN--- 165 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC---
Confidence 87642 1345679999999988886 99999987643321 1122233345778888888853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
...||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|.
T Consensus 166 --~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 166 --AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred --cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999975 799999999975 5677899999998
Q ss_pred cCcEEEEeCCC
Q 000773 922 RGGQVIYSGPL 932 (1293)
Q Consensus 922 ~~G~~~~~g~~ 932 (1293)
+ |+++..|+.
T Consensus 242 ~-G~i~~~g~~ 251 (272)
T PRK14236 242 M-GKLVEYGDT 251 (272)
T ss_pred C-CEEEecCCH
Confidence 5 899998875
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=328.79 Aligned_cols=215 Identities=21% Similarity=0.283 Sum_probs=171.7
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--C-CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~g 770 (1293)
.+.++++++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYY-------------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 46777777643 33459999999999999999999999999999999999642 1 12579999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 841 (1293)
.++.. ...++.++|++|++.+++. ||+||+.+....+.. .+.....+++.++++.+|+. +..++.
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988875 999999886433211 12222334567888888874 333443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999865 689999999975 5677899999998
Q ss_pred cCcEEEEeCCC
Q 000773 922 RGGQVIYSGPL 932 (1293)
Q Consensus 922 ~~G~~~~~g~~ 932 (1293)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=324.19 Aligned_cols=214 Identities=25% Similarity=0.268 Sum_probs=171.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~ 771 (1293)
+.++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 7 i~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14261 7 LSTKNLNLWY-------------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGE 73 (253)
T ss_pred EEEeeeEEEE-------------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 5677776543 3456999999999999999999999999999999999964321 24799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 842 (1293)
++.. ...++.++|++|++.+++. ||+||+.+....+.. ....+....+.++++.+++.+ ..++.
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 146 (253)
T PRK14261 74 NIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS---- 146 (253)
T ss_pred EccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC----
Confidence 7542 2335679999999988885 999999986543211 122233345778888888743 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+
T Consensus 147 -~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~ 223 (253)
T PRK14261 147 -ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL 223 (253)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999875 689999999975 46678999999985
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 224 -G~i~~~g~~ 232 (253)
T PRK14261 224 -GKLIEFDKT 232 (253)
T ss_pred -CEEEEcCCH
Confidence 899988875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=357.87 Aligned_cols=211 Identities=23% Similarity=0.353 Sum_probs=174.0
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQNDIHS 792 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~ 792 (1293)
++++.+|+||||++++||+++|+||||||||||+++|+|..++++.+|+|.++|.+.... ..++.+||++|++.++
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 11 FGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90 (500)
T ss_pred eCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccC
Confidence 345679999999999999999999999999999999999765423579999999876431 1235699999999999
Q ss_pred CCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 793 PQVTVKESLIYSAFLRLAK-EVSKEDKIIFVEEVMDLVELESLK-DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+.+||+||+.+........ ....++..++++++++.+|+.+.. ++.++ .|||||||||+||+||+.+|++|+|
T Consensus 91 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~iA~al~~~p~lllL 165 (500)
T TIGR02633 91 PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG-----DYGGGQQQLVEIAKALNKQARLLIL 165 (500)
T ss_pred CCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999999998754322111 122333345678999999997654 44444 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~ 934 (1293)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++..|+.+.
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 166 DEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 9999999999999999999999888999999999975 56778999999985 89999888754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=323.81 Aligned_cols=214 Identities=24% Similarity=0.297 Sum_probs=171.2
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC--C-ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~--~-~~~G~i~~~g~ 771 (1293)
+.++|+++.. +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ . +.+|+|.++|.
T Consensus 5 l~~~~l~~~~-------------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~ 71 (251)
T PRK14251 5 ISAKDVHLSY-------------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ 71 (251)
T ss_pred EEEEeeEEEE-------------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCE
Confidence 5677776543 345699999999999999999999999999999999997641 1 25799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 842 (1293)
+... ...++.++|++|++.+++ .||+||+.+...... ....+...+.++++++.+++.. ..++.
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 144 (251)
T PRK14251 72 NIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN---- 144 (251)
T ss_pred EcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC----
Confidence 7532 124567999999998886 799999987543221 1122223345778889988842 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
..+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+
T Consensus 145 -~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~ 221 (251)
T PRK14251 145 -AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN 221 (251)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999854 799999999975 56778999999975
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 222 -G~i~~~~~~ 230 (251)
T PRK14251 222 -GDLIEAGPT 230 (251)
T ss_pred -CEEEEeCCH
Confidence 899988875
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=357.50 Aligned_cols=211 Identities=26% Similarity=0.343 Sum_probs=176.0
Q ss_pred ccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccCCC
Q 000773 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQNDI 790 (1293)
Q Consensus 715 ~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~~ 790 (1293)
++++++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.
T Consensus 6 ~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~ 83 (491)
T PRK10982 6 KSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELN 83 (491)
T ss_pred EEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccc
Confidence 344556799999999999999999999999999999999998763 47999999987642 123456999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 791 HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 791 ~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+++.+||+||+.+............++..++++++++.+|+.+..++.++ +|||||||||+||+||+.+|++|+|
T Consensus 84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 84 LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999875321111011233334567899999999877777655 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGR 934 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~ 934 (1293)
||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |+++..|+.+.
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 9999999999999999999999878999999999975 56778999999985 89999998754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=336.48 Aligned_cols=224 Identities=25% Similarity=0.388 Sum_probs=190.6
Q ss_pred ccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEc
Q 000773 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCE 786 (1293)
Q Consensus 711 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~ 786 (1293)
++.+++++..++|+||||++++||++||+|.||||||||+|+|+|... +.+|+|.++|++... .....-|+.|.
T Consensus 12 ~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~ 89 (500)
T COG1129 12 RGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATVH 89 (500)
T ss_pred ecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence 455567788899999999999999999999999999999999999776 458999999987642 23445689999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRL-AKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
|+..+.|+|||.||+.++...+. ..-.+.+...+++.++++.+|+....++.++ +||+||||.|.|||||..++
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999987654433 2334556666778999999999644777766 69999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC-CC-ChhHHHHHH
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL-GR-NSHKVIEYY 943 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~-~~-~~~~~~~~~ 943 (1293)
+||+||||||.|+......+.+.+++++++|.+||++||.++ ++++.+||+.+|.+ |+.+..++. ++ ..+++.+..
T Consensus 165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv~~M 242 (500)
T COG1129 165 RVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVRLM 242 (500)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999986 89999999999985 899988883 43 334555554
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=323.37 Aligned_cols=204 Identities=22% Similarity=0.245 Sum_probs=165.0
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCccCCh-----hcccceEEEEccCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFPKKQ-----ETFARISGYCEQND 789 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~ 789 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+... ...++.++|++|++
T Consensus 15 ~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 15 HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence 3456999999999999999999999999999999999976532 236999999987532 13456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
.+++. |++||+.+....+.. ...++..+.++++++.+++.+ ..++. ..+||||||||++|||||+.+|
T Consensus 95 ~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~Gq~qrv~laral~~~p 166 (251)
T PRK14249 95 NPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHKS-----GLALSGGQQQRLCIARVLAIEP 166 (251)
T ss_pred ccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCC
Confidence 98875 999999876543211 112222344677788888753 23333 3479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
++++|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 167 ~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14249 167 EVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRT 230 (251)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCH
Confidence 9999999999999999999999999985 5899999999975 56677899999974 899998875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=326.94 Aligned_cols=214 Identities=21% Similarity=0.276 Sum_probs=171.1
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--C-CceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~g~ 771 (1293)
+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|.
T Consensus 22 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 88 (268)
T PRK14248 22 LEVKDLSIYY-------------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGL 88 (268)
T ss_pred EEEEEEEEEe-------------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCE
Confidence 6777777643 34569999999999999999999999999999999999642 1 135799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 842 (1293)
+... ...++.++|++|++.+++. |++||+.+...... ..........+.+.++.+++. +..++.
T Consensus 89 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 161 (268)
T PRK14248 89 NILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS---- 161 (268)
T ss_pred EcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC----
Confidence 7632 1245679999999988875 99999987643221 111222234467788888874 233443
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+
T Consensus 162 -~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~ 238 (268)
T PRK14248 162 -ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLN 238 (268)
T ss_pred -cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999865 689999999975 56778999999985
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 239 -G~i~~~~~~ 247 (268)
T PRK14248 239 -GDLVEYDQT 247 (268)
T ss_pred -CEEEEeCCH
Confidence 899998875
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=326.42 Aligned_cols=218 Identities=25% Similarity=0.405 Sum_probs=171.9
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++... +++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 467777776441 235699999999999999999999999999999999998663 579999999876
Q ss_pred ChhcccceEEEEccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 774 KQETFARISGYCEQNDIHS--PQVTVKESLIYSAFLRLA-KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 774 ~~~~~~~~~~~v~q~~~~~--~~lTv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
.....++.++|++|++.+. ...+++|++.+....... ......+...+++++++.+|+.+..++.++ .||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHH
Confidence 4322234689999997653 234788887653211000 001112223456788999999887777665 69999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999975 567788988655 4 8999988
Q ss_pred CCC
Q 000773 931 PLG 933 (1293)
Q Consensus 931 ~~~ 933 (1293)
+.+
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 865
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=308.03 Aligned_cols=186 Identities=28% Similarity=0.434 Sum_probs=164.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-------ccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-------PQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+|||.|+||||||||+|+|+|+.+|+ +|.|.+||+.+.+.. .++++|||+|+-.+||.+||+.|+.|+..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 58999999999999999999999999 999999998764422 35789999999999999999999999864
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
... ...-|.+.+.||++|..++..++ |||||||||
T Consensus 103 ~~~----------------------------------------~~~fd~iv~lLGI~hLL~R~P~~-----LSGGEkQRV 137 (352)
T COG4148 103 KSM----------------------------------------RAQFDQLVALLGIEHLLDRYPGT-----LSGGEKQRV 137 (352)
T ss_pred ccc----------------------------------------hHhHHHHHHHhCcHHHHhhCCCc-----cCcchhhHH
Confidence 210 01135678999999998876654 999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
+|+|||++.|++|+||||.+.||-....+++-.|++++++.+..|+.+ +|..+|+.+++|+|++|++|++...|+.+++
T Consensus 138 AIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV-SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v 216 (352)
T COG4148 138 AIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV-SHSLDEVLRLADRVVVLENGKVKASGPLEEV 216 (352)
T ss_pred HHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE-ecCHHHHHhhhheEEEecCCeEEecCcHHHH
Confidence 999999999999999999999999999999999999999888889886 5667899999999999999999999999988
Q ss_pred HH
Q 000773 234 LE 235 (1293)
Q Consensus 234 ~~ 235 (1293)
.+
T Consensus 217 ~~ 218 (352)
T COG4148 217 WG 218 (352)
T ss_pred hc
Confidence 64
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=338.38 Aligned_cols=191 Identities=27% Similarity=0.357 Sum_probs=164.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++.+.. .++.++||+|++.+++.+||+||+.|+.+..+..
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP- 107 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999988 999999999886533 3467999999999999999999999986532110
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
. . +.+..++++++.+||++..++.++ .|||||||||+|||||
T Consensus 108 ---------~----------~--------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvalARAL 149 (356)
T PRK11650 108 ---------K----------A--------------EIEERVAEAARILELEPLLDRKPR-----ELSGGQRQRVAMGRAI 149 (356)
T ss_pred ---------H----------H--------------HHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHH
Confidence 0 0 011235678999999988887765 4999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||++||+.++..+.+.|+++.++.++|+|+++| +..++..++|++++|++|+++..|+++++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTH-d~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTH-DQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999998766899999755 557899999999999999999999998874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=357.81 Aligned_cols=211 Identities=21% Similarity=0.354 Sum_probs=178.3
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+|+||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 12 l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 76 (510)
T PRK15439 12 LCARSISKQY-------------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPCA 76 (510)
T ss_pred EEEEeEEEEe-------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5677776543 445699999999999999999999999999999999998763 4799999998754
Q ss_pred hh---c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 775 QE---T-FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 775 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
.. . .++.+||++|++.+++.+||+||+.+... . .++..++++++++.+|+.+..++.++ +||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 144 (510)
T PRK15439 77 RLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSAG-----SLEVA 144 (510)
T ss_pred CCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCChh-----hCCHH
Confidence 21 1 23458999999999999999999987421 1 12223457889999999887777765 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
|||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.+ |++++.|
T Consensus 145 ~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g 222 (510)
T PRK15439 145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSG 222 (510)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 999999999999999999999999999999999999999999888999999999975 56778999999985 8999998
Q ss_pred CCCC
Q 000773 931 PLGR 934 (1293)
Q Consensus 931 ~~~~ 934 (1293)
+.++
T Consensus 223 ~~~~ 226 (510)
T PRK15439 223 KTAD 226 (510)
T ss_pred ChHH
Confidence 8753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=324.07 Aligned_cols=221 Identities=22% Similarity=0.269 Sum_probs=174.6
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g 770 (1293)
.++++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++. +..|+|.++|
T Consensus 7 ~l~~~nl~~~~-------------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYY-------------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEe-------------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 36777777654 3346999999999999999999999999999999999976532 1369999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVT 845 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 845 (1293)
.+... ...++.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+.... ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87521 234567999999988888 899999987643221 11223334557889999988542111111 1234
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecC-
Q 000773 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG- 923 (1293)
Q Consensus 846 ~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~- 923 (1293)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ ++.+.+|++++|.++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999875 4899999999975 577889999999742
Q ss_pred ---cEEEEeCCC
Q 000773 924 ---GQVIYSGPL 932 (1293)
Q Consensus 924 ---G~~~~~g~~ 932 (1293)
|++++.|++
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999886
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=323.23 Aligned_cols=208 Identities=20% Similarity=0.230 Sum_probs=169.0
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCccCCh-----hcccceEEEEccC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFPKKQ-----ETFARISGYCEQN 788 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~ 788 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+... ...++.++|++|+
T Consensus 18 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred eCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecC
Confidence 35567999999999999999999999999999999999976431 257999999987532 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
+.++ .+|++||+.+....+. . ..+....++++++.+++.+..+...+ ...+.||||||||++|||||+++|++|
T Consensus 98 ~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~ll 171 (261)
T PRK14263 98 PNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVL 171 (261)
T ss_pred Cccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9887 5999999988754331 1 12223457889999998543222221 124579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee-------cCcEEEEeCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-------RGGQVIYSGPL 932 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-------~~G~~~~~g~~ 932 (1293)
+|||||+|||+.++..+.+.|++++ +++|||+++|+++ ++.+.+|++++|. ++|+++..|+.
T Consensus 172 llDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 172 LLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 9999999999999999999999986 4799999999975 5778899999996 35999999885
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=320.57 Aligned_cols=213 Identities=20% Similarity=0.264 Sum_probs=171.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC--ceeEEEEEcCc
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG--YIEGDIRISGF 771 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g~ 771 (1293)
.++++|+++.. ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 46677776543 235899999999999999999999999999999999986531 15799999998
Q ss_pred cCChhc-ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCC
Q 000773 772 PKKQET-FARISGYCEQNDI--HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES---LKDAIVGLPGVT 845 (1293)
Q Consensus 772 ~~~~~~-~~~~~~~v~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~ 845 (1293)
++.... .++.++|++|++. +.+.+|+.+++.+.+.... .... ..++.++++.+++.+ ..++.+ .
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~-----~ 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPAD--DATLTAALEAVGLENAARVLKLYP-----F 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CChH--HHHHHHHHHHcCCCChhhhhhcCC-----c
Confidence 764322 2356999999974 4567899998866432211 1122 245788999999976 334443 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 846 ~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-G 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998764 899999999975 46678999999975 8
Q ss_pred EEEEeCCC
Q 000773 925 QVIYSGPL 932 (1293)
Q Consensus 925 ~~~~~g~~ 932 (1293)
+++..|+.
T Consensus 218 ~i~~~~~~ 225 (254)
T PRK10418 218 RIVEQGDV 225 (254)
T ss_pred EEEEecCH
Confidence 99998875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=355.44 Aligned_cols=216 Identities=28% Similarity=0.463 Sum_probs=178.1
Q ss_pred cceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcC
Q 000773 691 TPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 770 (1293)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 770 (1293)
....++|+||+++++..+ +..||+|+|+.|++||.+||+|||||||||++++|.+..+ |.+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcC
Confidence 345789999999876543 4569999999999999999999999999999999999877 4589999999
Q ss_pred ccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCccccccccc
Q 000773 771 FPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDL-------VELESLKDAIVG 840 (1293)
Q Consensus 771 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~l~~~~~~~~~ 840 (1293)
.+++. ..++..+|.|.|+|.++ ..|++||+.|+. .+.+.++ ++++.+. ..|.+-.|+.+|
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDATREE----IEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----CcccHHH----HHHHHHHccHHHHHHhhHHhhccccc
Confidence 98754 34567899999999776 579999998741 1223332 2333333 234556688888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhhee
Q 000773 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 841 ~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
..++ +||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +|+|.|+++|+++ ..+.+|++++|
T Consensus 485 e~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS--tIrnaD~I~v~ 560 (1228)
T KOG0055|consen 485 ERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS--TIRNADKIAVM 560 (1228)
T ss_pred CCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh--hhhccCEEEEE
Confidence 6554 599999999999999999999999999999999999999999998865 5899999999975 55669999999
Q ss_pred ecCcEEEEeCCCC
Q 000773 921 KRGGQVIYSGPLG 933 (1293)
Q Consensus 921 ~~~G~~~~~g~~~ 933 (1293)
.+ |++++.|..+
T Consensus 561 ~~-G~IvE~G~h~ 572 (1228)
T KOG0055|consen 561 EE-GKIVEQGTHD 572 (1228)
T ss_pred EC-CEEEEecCHH
Confidence 85 9999999975
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=336.77 Aligned_cols=191 Identities=26% Similarity=0.388 Sum_probs=164.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-cceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-QKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.|+.+.++...
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~ 110 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence 47999999999999999999999988 9999999998865433 4679999999999999999999999875432100
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
. +.++.++++++.+||.+..|+.+. .|||||||||+|||||
T Consensus 111 --------------------~--------------~~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~QRVaLARaL 151 (351)
T PRK11432 111 --------------------E--------------ERKQRVKEALELVDLAGFEDRYVD-----QISGGQQQRVALARAL 151 (351)
T ss_pred --------------------H--------------HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 0 012245678999999887776664 5999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||++||+.++..+.+.|+++.++.++|+|+++ |+..++..++|||++|++|+++..|+++++.
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vT-Hd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVT-HDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999877789999874 5567899999999999999999999998874
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=325.43 Aligned_cols=203 Identities=26% Similarity=0.386 Sum_probs=169.0
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh------hcccceEEEEccCC--CC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ------ETFARISGYCEQND--IH 791 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~------~~~~~~~~~v~q~~--~~ 791 (1293)
+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++ .+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 569999999999999999999999999999999999765 358999999987532 12356799999997 46
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 792 SPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 792 ~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
.+..|+.|++.+..... ......+...+++++++.+|+. +..++.++ .||||||||++||+||+.+|++|+|
T Consensus 103 ~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 103 NPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRPP-----QLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCCc-----cCChHHHHHHHHHHHHhcCCCEEEE
Confidence 67899999987643211 1123334445688999999996 46666543 7999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.+
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 237 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPVG 237 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCChh
Confidence 9999999999999999999998765 899999999975 56678999999974 8999998864
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=302.01 Aligned_cols=189 Identities=27% Similarity=0.311 Sum_probs=160.7
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----ccceEEeecccc--ccCCCCCHHHHHHHHhhcc
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----PQKTSAYISQND--VHVGEMTVKETLDFSARCL 75 (1293)
Q Consensus 2 ~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~~~~ 75 (1293)
.+|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+.+|+|+| .+-|..||++.|.-+....
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 6899999999999999999999998 999999998765532 456789999997 4788899999997665432
Q ss_pred CCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCcc-ccCcccCCCcccccccccchhhH
Q 000773 76 GVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDI-CKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
+..+ .++.+.++|+.+||++ .++ +++.+||||||||++
T Consensus 113 ~~~~------------------------------------~~~~i~~~L~~VgL~~~~l~-----R~P~eLSGGQ~QRia 151 (252)
T COG1124 113 GLSK------------------------------------SQQRIAELLDQVGLPPSFLD-----RRPHELSGGQRQRIA 151 (252)
T ss_pred CccH------------------------------------HHHHHHHHHHHcCCCHHHHh-----cCchhcChhHHHHHH
Confidence 2100 0112566899999975 443 455679999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||||+.+|++|++|||||+||+..+..|++.|.++.++++.|+|++ +|+...+.++||||+||++|++++.++.+++.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~I-sHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFI-SHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEE-eCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999999999999999995 67788999999999999999999999999986
Q ss_pred H
Q 000773 235 E 235 (1293)
Q Consensus 235 ~ 235 (1293)
+
T Consensus 231 ~ 231 (252)
T COG1124 231 S 231 (252)
T ss_pred c
Confidence 4
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=318.67 Aligned_cols=209 Identities=21% Similarity=0.342 Sum_probs=167.8
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++.. +++.+++|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 8 i~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 72 (225)
T PRK10247 8 LQLQNVGYLA-------------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDIS 72 (225)
T ss_pred EEEeccEEee-------------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcC
Confidence 5677776543 34569999999999999999999999999999999999765 35799999998653
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000773 775 Q---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgG 850 (1293)
. ..+++.++|++|++.+++ .|++||+.+....+. . ... .++++++++.+++. ...++.++ .||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~-~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G 141 (225)
T PRK10247 73 TLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN--Q-QPD--PAIFLDDLERFALPDTILTKNIA-----ELSGG 141 (225)
T ss_pred cCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC--C-ChH--HHHHHHHHHHcCCChHHhcCCcc-----cCCHH
Confidence 2 224567899999998887 499999987543321 1 111 23467899999995 45565544 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+ +.+|++++|.+.+..+.+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~ 219 (225)
T PRK10247 142 EKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQE 219 (225)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhh
Confidence 999999999999999999999999999999999999999998764 899999999975 34 579999999644444444
Q ss_pred CC
Q 000773 930 GP 931 (1293)
Q Consensus 930 g~ 931 (1293)
|.
T Consensus 220 ~~ 221 (225)
T PRK10247 220 AR 221 (225)
T ss_pred hh
Confidence 43
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=333.80 Aligned_cols=191 Identities=23% Similarity=0.304 Sum_probs=162.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|+.+|+ +|+|.++|.++.... .++.++|++|+..+++.+||+||+.++...
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 47999999999999999999999988 999999999876532 245799999999999999999999987543
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+.. .. +.++.+.++++.+||.+..|..++ .|||||||||+
T Consensus 110 ~~~~--------------------~~--------------~~~~~v~e~l~~vgL~~~~~~~~~-----~LSgGqkQRV~ 150 (343)
T TIGR02314 110 DNTP--------------------KD--------------EIKRKVTELLALVGLGDKHDSYPS-----NLSGGQKQRVA 150 (343)
T ss_pred cCCC--------------------HH--------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHH
Confidence 2110 00 012235678999999988877665 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||||+.+|++++|||||||||+.++..+++.|+++.++.|.|+|+++ |..+.+.+.||++++|++|++++.|+++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliT-H~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLIT-HEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999876689999975 5567888999999999999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=321.60 Aligned_cols=214 Identities=23% Similarity=0.283 Sum_probs=169.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--CC-ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~~-~~~G~i~~~g~ 771 (1293)
+.++|++... +++.+|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 72 (252)
T PRK14255 6 ITSSDVHLFY-------------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQ 72 (252)
T ss_pred EEEEeEEEEE-------------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCE
Confidence 5667776543 34569999999999999999999999999999999999643 21 24799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000773 772 PKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~~ 842 (1293)
+... ...++.++|++|++.+++ .|++||+.+....+.. ...+...+.+.+.++.+++. +..++.
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~---- 145 (252)
T PRK14255 73 NIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES---- 145 (252)
T ss_pred EcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC----
Confidence 7531 234567999999998888 6999999876433211 11222223456778888764 223333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|.+
T Consensus 146 -~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~ 222 (252)
T PRK14255 146 -ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT 222 (252)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 347999999999999999999999999999999999999999999999865 589999999975 56778999999975
Q ss_pred CcEEEEeCCC
Q 000773 923 GGQVIYSGPL 932 (1293)
Q Consensus 923 ~G~~~~~g~~ 932 (1293)
|+++..|++
T Consensus 223 -G~i~~~~~~ 231 (252)
T PRK14255 223 -GNLIEFADT 231 (252)
T ss_pred -CEEEEeCCH
Confidence 899988875
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=314.20 Aligned_cols=191 Identities=26% Similarity=0.399 Sum_probs=165.2
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccC----CccccceEEeeccccc-cCCCCCHHHHHHHHhhccC
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLN----EFVPQKTSAYISQNDV-HVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 2 ~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~----~~~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1293)
++|+||||||||||+++|+|+++|. +|+|.++|.++. ....++.+|||+|+|. .+..-||.|.+.|+.+..+
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 7899999999999999999999998 899999998865 2345678999999973 4556699999999987654
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
... .+.+++++.+++.+||.+.+++.+- .|||||||||+||
T Consensus 110 ~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r~p~-----~LSGGqkqRvaIA 150 (235)
T COG1122 110 LPR----------------------------------EEIEERVAEALELVGLEELLDRPPF-----NLSGGQKQRVAIA 150 (235)
T ss_pred CCH----------------------------------HHHHHHHHHHHHHcCchhhccCCcc-----ccCCcceeeHHhh
Confidence 311 0124467889999999998887664 4999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
.+|+.+|++++|||||||||+..+.++++.++++.++.++|+|++ +|+.+.+..++||+++|++|+++++|++.++.+
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~-tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-THDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE-eCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999999999988778899986 567889999999999999999999999887754
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=320.41 Aligned_cols=207 Identities=24% Similarity=0.298 Sum_probs=166.9
Q ss_pred cccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC--Cc--eeEEEEEcCccCCh---hcccceEEEEccC
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG--GY--IEGDIRISGFPKKQ---ETFARISGYCEQN 788 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~--~~--~~G~i~~~g~~~~~---~~~~~~~~~v~q~ 788 (1293)
+++++.+|+|+||++++||+++|+||||||||||+++|+|...+ |. +.|++.++|.+... ...++.++|++|+
T Consensus 19 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~ 98 (257)
T PRK14246 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQ 98 (257)
T ss_pred ecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccC
Confidence 34567799999999999999999999999999999999997543 21 23566666665421 2345679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000773 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLPGVTGLSIEQRKRLTIAVELVAN 864 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~ 864 (1293)
+.+++.+|++||+.+...... ....++...+++++++.+++.+ ..++. +..||||||||++|||||+.+
T Consensus 99 ~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~ 171 (257)
T PRK14246 99 PNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALK 171 (257)
T ss_pred CccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcC
Confidence 999999999999988643221 1123344456788999999863 33433 347999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 865 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 865 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|.+ |+++..|+.
T Consensus 172 P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~ 236 (257)
T PRK14246 172 PKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSS 236 (257)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999864 699999999975 46688999999985 899998875
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=321.68 Aligned_cols=220 Identities=22% Similarity=0.287 Sum_probs=172.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++++++.. +++.+|+|||+++++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 8 l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 8 LEIKNLHASV-------------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESIL 74 (252)
T ss_pred EEEEeEEEEe-------------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcc
Confidence 6677776543 334699999999999999999999999999999999996211145799999998754
Q ss_pred hh---cccc-eEEEEccCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000773 775 QE---TFAR-ISGYCEQNDIHSPQVTVKESLIYSAFLRLA----KEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVT 845 (1293)
Q Consensus 775 ~~---~~~~-~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~ 845 (1293)
.. ..++ .++|++|++.+++.+|+.+++.+....... ......+...++.++++.+|+. +..++.++ .
T Consensus 75 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 150 (252)
T CHL00131 75 DLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----E 150 (252)
T ss_pred cCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----c
Confidence 31 2222 478999999999999999998765332110 0111222334577889999996 35555443 1
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-HhHhheeecCc
Q 000773 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGG 924 (1293)
Q Consensus 846 ~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~~G 924 (1293)
+|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|
T Consensus 151 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~G 228 (252)
T CHL00131 151 GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-NG 228 (252)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-CC
Confidence 49999999999999999999999999999999999999999999999877999999999965 34444 79999997 48
Q ss_pred EEEEeCCCC
Q 000773 925 QVIYSGPLG 933 (1293)
Q Consensus 925 ~~~~~g~~~ 933 (1293)
++++.|+++
T Consensus 229 ~i~~~~~~~ 237 (252)
T CHL00131 229 KIIKTGDAE 237 (252)
T ss_pred EEEEecChh
Confidence 999998863
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=324.34 Aligned_cols=215 Identities=20% Similarity=0.208 Sum_probs=170.3
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--C-CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~g 770 (1293)
-+.++|+++.. +++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWY-------------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEE-------------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 36778877643 33569999999999999999999999999999999999754 1 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 841 (1293)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+.....+.++++.+++. +..++.
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87531 234567999999998887 499999987643221 111222234456777777542 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|.
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999875 799999999975 4677899999997
Q ss_pred cCcEEEEeCCC
Q 000773 922 RGGQVIYSGPL 932 (1293)
Q Consensus 922 ~~G~~~~~g~~ 932 (1293)
+ |+++..|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=319.99 Aligned_cols=198 Identities=25% Similarity=0.356 Sum_probs=167.9
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHH
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTVK 798 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~ 798 (1293)
+|+|+||++++||+++|+||||||||||+++|+|..+ .+|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 27999999987642 22345689999999888899999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 000773 799 ESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVA-------NPSIIFMD 871 (1293)
Q Consensus 799 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~-------~p~illlD 871 (1293)
||+.+.... ....++..++++++++.+|+.+..++.++ .||||||||++||+||+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875211 11223334567899999999877776654 799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 872 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 872 EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |++++.|+.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999877999999999975 57788999999985 8999988753
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=355.45 Aligned_cols=216 Identities=28% Similarity=0.363 Sum_probs=177.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~ 69 (501)
T PRK11288 5 LSFDGIGKTF-------------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEMR 69 (501)
T ss_pred EEEeeeEEEE-------------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 5666666543 345699999999999999999999999999999999998653 4799999998753
Q ss_pred h----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 775 Q----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 775 ~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
. ..+++.+||++|++.+++.+||+||+.+............++..++++++++.+|+.+..++.++ +||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCHH
Confidence 2 12356799999999999999999999875321111112233444567899999999877666654 79999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++...+|++++|.+ |+++..+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~ 222 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeec
Confidence 999999999999999999999999999999999999999999878999999999975 56778999999985 8888766
Q ss_pred CC
Q 000773 931 PL 932 (1293)
Q Consensus 931 ~~ 932 (1293)
+.
T Consensus 223 ~~ 224 (501)
T PRK11288 223 DD 224 (501)
T ss_pred Cc
Confidence 53
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=335.89 Aligned_cols=192 Identities=24% Similarity=0.376 Sum_probs=164.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.+.. .++.++||+|++.+||.+||+||+.|+.+.++..
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~- 107 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG- 107 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999988 999999999876533 3467999999999999999999999986532110
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.. +.+..++++++.+||++..|+.+. .|||||||||+|||||
T Consensus 108 -------------------~~--------------~~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 108 -------------------RA--------------EVAERVAELLDLVGLPGSERKYPG-----QLSGGQQQRVALARAL 149 (353)
T ss_pred -------------------HH--------------HHHHHHHHHHHHcCCCchhhCChh-----hCCHHHHHHHHHHHHH
Confidence 00 012246778999999988887665 5999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
+.+|++++|||||++||+.++..+.+.|+++.++.+.|+|+++| ...++..++||+++|++|++++.|+++++.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTH-d~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH-DQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999998777899999755 5578999999999999999999999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=334.39 Aligned_cols=192 Identities=22% Similarity=0.327 Sum_probs=164.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-------QKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.|+.+
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999988 9999999998865432 4679999999999999999999999865
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
..+... . +..+.+.++++.+||++..++.++ .|||||||||
T Consensus 98 ~~~~~~--------------------~--------------~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV 138 (363)
T TIGR01186 98 LLGWPE--------------------Q--------------ERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRV 138 (363)
T ss_pred HcCCCH--------------------H--------------HHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHH
Confidence 432100 0 012235678999999887777665 4999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|+++ |..+++.+++|||++|++|+++..|+++++
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vT-Hd~~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT-HDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999776689999974 556788999999999999999999999887
Q ss_pred HH
Q 000773 234 LE 235 (1293)
Q Consensus 234 ~~ 235 (1293)
..
T Consensus 218 ~~ 219 (363)
T TIGR01186 218 LR 219 (363)
T ss_pred Hh
Confidence 53
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=321.70 Aligned_cols=196 Identities=24% Similarity=0.418 Sum_probs=154.6
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 5699999999999999999999999999999999998753 47999999987532 234567999999988765 69
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKI-----IFVEEVMDLV--ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
|.||+.+... ....+... ....+.++.+ ++....+.. +.+|||||||||+|||||+.+|++|+
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999976321 11111110 0112233333 333333333 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||||+|||+.++..+.+.|+++++ |+|||++||+++ ++ ..+|++++|.+ |++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999999864 899999999975 34 56999999985 899998875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=312.91 Aligned_cols=187 Identities=28% Similarity=0.379 Sum_probs=155.8
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 796 (1293)
++++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+......++.++|++|++.+++.+|
T Consensus 12 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~t 89 (207)
T PRK13539 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALT 89 (207)
T ss_pred ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCc
Confidence 344569999999999999999999999999999999999865 357999999987532224567899999998889999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
|+||+.+...... ... +.++++++.+|+.+..++.++ .||||||||++||+||+.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~---~~~----~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 90 VAENLEFWAAFLG---GEE----LDIAAALEAVGLAPLAHLPFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred HHHHHHHHHHhcC---CcH----HHHHHHHHHcCCHHHHcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999987543221 111 236889999999876666554 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhhee
Q 000773 877 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
||+.++..+.+.|++++++|+|||++||+++ ++. . |+++.+
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~ 198 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDL 198 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEee
Confidence 9999999999999998877999999999975 333 3 766655
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=323.90 Aligned_cols=214 Identities=20% Similarity=0.233 Sum_probs=171.1
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g 770 (1293)
-+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~-------------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFY-------------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEe-------------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 46777777643 3456999999999999999999999999999999999975321 2479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIVGL 841 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~~~ 841 (1293)
.+... ..+++.++|++|++.+++. ||.||+.+....+. ... +..+.+++.++.+++. +..++.
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~--- 158 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDKLKEK--- 158 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHHhcCC---
Confidence 87531 2345679999999988875 99999987643221 111 1223456778888774 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 842 ~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|.
T Consensus 159 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 234 (274)
T PRK14265 159 --GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFN 234 (274)
T ss_pred --cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 347999999999999999999999999999999999999999999999865 799999999975 5778899999997
Q ss_pred --------cCcEEEEeCCC
Q 000773 922 --------RGGQVIYSGPL 932 (1293)
Q Consensus 922 --------~~G~~~~~g~~ 932 (1293)
++|++++.|++
T Consensus 235 ~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 235 TEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccccccCceEEEeCCH
Confidence 25899999986
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=304.68 Aligned_cols=204 Identities=25% Similarity=0.332 Sum_probs=170.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcccc----ceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ----KTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~----~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+|+|+|.++|+ +|+|.++|++++....+ .-++--+|...+|++|||.||+..++..+.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 57999999999999999999999998 99999999999876543 335678999999999999999998865432
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
. +...... +.. ..+..+..+.+..+|+.+||.+.+|+..|+ ||+|||||+.||
T Consensus 109 ~---~~~~l~~----------~~~---------~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIA 161 (250)
T COG0411 109 G---LSGLLGR----------PRA---------RKEEREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIA 161 (250)
T ss_pred h---hhhhhcc----------ccc---------hhhHHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHH
Confidence 1 0000000 000 000112234567899999999999999987 999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|||+.+|++|+||||.+||.+....++.+.|+++.++.|.|++++ .|+++.+..+||||+||+.|+++.+|+++++.+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillI-EHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLI-EHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEE-EeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999999999999999999988777888884 788999999999999999999999999999864
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=303.96 Aligned_cols=159 Identities=30% Similarity=0.478 Sum_probs=142.0
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCCCC
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lT 796 (1293)
++.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLT 89 (173)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccchHhhhccEEEEecCCccccCCc
Confidence 34699999999999999999999999999999999998653 47999999987543 234567999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
+.||+. ||||||||++|||||+.+|++++|||||+|
T Consensus 90 v~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~ 125 (173)
T cd03230 90 VRENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSG 125 (173)
T ss_pred HHHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 999862 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 877 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
||+.++..+.+.|++++++|.|+|++||+++ ++.+.+|++++|.+ |+
T Consensus 126 LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~-g~ 172 (173)
T cd03230 126 LDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN-GR 172 (173)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC-CC
Confidence 9999999999999999877899999999975 56668999999985 54
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=320.99 Aligned_cols=204 Identities=25% Similarity=0.321 Sum_probs=164.1
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCcc-----CCh---h----cccceEEEE
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP-----KKQ---E----TFARISGYC 785 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~-----~~~---~----~~~~~~~~v 785 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+ ... . ..++.++|+
T Consensus 14 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~ 91 (253)
T TIGR02323 14 GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFV 91 (253)
T ss_pred CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccccccccccCCHHHHHHhhhcceEEE
Confidence 345689999999999999999999999999999999998763 47999999876 321 1 123468999
Q ss_pred ccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 000773 786 EQNDI--HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELV 862 (1293)
Q Consensus 786 ~q~~~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~ 862 (1293)
+|++. +.+.+|+.||+.+..... .. ....+....++++++.+|+. +..++.+. .|||||||||+|||||+
T Consensus 92 ~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~LSgG~~qrv~laral~ 164 (253)
T TIGR02323 92 HQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDLPR-----AFSGGMQQRLQIARNLV 164 (253)
T ss_pred EeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcCch-----hcCHHHHHHHHHHHHHh
Confidence 99974 456789999986542211 11 11112335678899999996 35565543 79999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 863 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 863 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+...+|++++|.+ |++++.|+.
T Consensus 165 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 165 TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999998764 899999999975 56668999999985 899998874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=322.40 Aligned_cols=213 Identities=20% Similarity=0.242 Sum_probs=169.8
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC--C-ceeEEEEEcCc
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIRISGF 771 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~--~-~~~G~i~~~g~ 771 (1293)
+.++|+++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|...+ . +.+|+|.++|.
T Consensus 11 l~i~~v~~~~-------------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 77 (264)
T PRK14243 11 LRTENLNVYY-------------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGK 77 (264)
T ss_pred EEEeeeEEEE-------------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCE
Confidence 5677776543 335699999999999999999999999999999999996431 1 25799999998
Q ss_pred cCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000773 772 PKK-----QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES----LKDAIVGLP 842 (1293)
Q Consensus 772 ~~~-----~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~~~~~~~~ 842 (1293)
++. ....++.++|++|++.+++ .|++||+.+....+. .. .+..++++++++.+++.+ ..++.
T Consensus 78 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~---- 148 (264)
T PRK14243 78 NLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQS---- 148 (264)
T ss_pred EccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCC----
Confidence 752 1234567999999998887 499999987643221 11 122234567778877743 22333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+
T Consensus 149 -~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~ 225 (264)
T PRK14243 149 -GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNV 225 (264)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEec
Confidence 347999999999999999999999999999999999999999999999875 589999999975 67888999999972
Q ss_pred --------CcEEEEeCCC
Q 000773 923 --------GGQVIYSGPL 932 (1293)
Q Consensus 923 --------~G~~~~~g~~ 932 (1293)
.|++++.|+.
T Consensus 226 ~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 226 ELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred ccccccccCceEEEeCCH
Confidence 4899998875
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=329.73 Aligned_cols=191 Identities=28% Similarity=0.395 Sum_probs=163.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||||++.+++.+||+||+.|.+...+..
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 99999999987542 23467999999999999999999999865543210
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
. . +....++.+++.+||.+..++.+++ ||||||||++||+|
T Consensus 112 ~--------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~a 152 (306)
T PRK13537 112 A--------------------A--------------AARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLARA 152 (306)
T ss_pred H--------------------H--------------HHHHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHHH
Confidence 0 0 0112346688999999888888865 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|+.+|++++|||||+|||+.++..+++.|+++++ .|+|||++. |..+++.++||||++|++|++++.|+++++.+
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~s-H~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTT-HFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEC-CCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999965 589999975 55678999999999999999999999998764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=329.65 Aligned_cols=212 Identities=25% Similarity=0.398 Sum_probs=176.9
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|++++.+. ...++|+|+|+++++||.+||+|+||||||||++.|+|..+ +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~-----------~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPG-----------QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCC-----------CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 5788888876643 23469999999999999999999999999999999999766 3589999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD-------AIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-------~~~~~~~ 843 (1293)
.. ..+++.+++++|...+|. -|+|+||..+. .+.++++ +.++++.+||.+... +.+|+ +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCCHHH----HHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 43 345678899999988875 49999997642 1234443 578899999987543 34554 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
.+.||||||||++|||+|++|.++++|||||.|||+.+.+++++.|.+-++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 578999999999999999999999999999999999999999999988764 899999999864 6788999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|++++.|...
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 9999999864
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=333.98 Aligned_cols=192 Identities=22% Similarity=0.332 Sum_probs=164.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCcee--EEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVR--GEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~--G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+|||||||||||++|+|+.+|+ + |+|.++|.++.... .++.++||+|++.+++.+||+||+.|+.+..+.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 7 99999998876433 246799999999999999999999998653221
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
. .. +.+..++++++.+||++..|+.++ +|||||||||+|||
T Consensus 110 ~--------------------~~--------------~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvaLAR 150 (362)
T TIGR03258 110 P--------------------KA--------------DIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIAR 150 (362)
T ss_pred C--------------------HH--------------HHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHHHHH
Confidence 0 00 012245778999999988887775 49999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhC-CCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVT-DATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~-~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
||+.+|++++|||||+|||+.++.++.+.|+++.++. |+|+|+++ |+.+++..++|||++|++|+++..|+++++.+
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vT-Hd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVT-HDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998764 78988874 55678999999999999999999999998743
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=315.73 Aligned_cols=194 Identities=18% Similarity=0.279 Sum_probs=164.2
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
+++.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|. +++++|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcH
Confidence 456799999999999999999999999999999999998663 4799999984 3567777777888999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000773 798 KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgL 877 (1293)
.||+.+..... ..+.++....++++++.+++.+..++.++ .||||||||++||+||+.+|++|+|||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVK-----KYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998754332 12334444456788888899877776544 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 878 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 878 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|+.+
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999777999999999965 56678999999974 8999988854
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=335.12 Aligned_cols=191 Identities=25% Similarity=0.352 Sum_probs=163.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++.... .++.++||+|++.++|.+||+||+.|+.+.++..
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 117 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP- 117 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC-
Confidence 47999999999999999999999988 999999999876533 3467999999999999999999999986532110
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.. +.++.++++++.+||++..++.+. +|||||||||+|||||
T Consensus 118 -------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~QRVaLARaL 159 (375)
T PRK09452 118 -------------------AA--------------EITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQRVAIARAV 159 (375)
T ss_pred -------------------HH--------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHH
Confidence 00 012235678999999988877664 5999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||++||..++..+.+.|+++.++.++|+|+++ |+..++..++|+|++|++|+++..|+++++.
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vT-Hd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVT-HDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999877789999875 5567899999999999999999999998874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=361.26 Aligned_cols=210 Identities=24% Similarity=0.426 Sum_probs=173.7
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++... +++.+|+|+|++++|||.+||+||||||||||+++|+|.. + .+|+|.+||.+.
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 588999975321 2356999999999999999999999999999999999987 4 379999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 843 (1293)
++ ..+++.++||+|++.+++. |++||+.++. ++.++++ ++++++..++.+ -.|+.+|..
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~-----~~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~- 482 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN-----PDASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQ- 482 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhcccccccccccC-
Confidence 53 4567889999999998865 9999998741 1233333 455666665543 346777754
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|+||+||||||+||+.+++.+.+.|+++. +++|+|+++|++ +..+.+|++++|++
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl--~~i~~aD~Iivl~~- 558 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQL--EDLAQWDQIWVMQD- 558 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecCh--HHHHhCCEEEEEeC-
Confidence 45799999999999999999999999999999999999999999999885 589999999997 46778999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|+++..|+.+
T Consensus 559 G~i~e~G~~~ 568 (588)
T PRK11174 559 GQIVQQGDYA 568 (588)
T ss_pred CeEeecCCHH
Confidence 8999999853
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=348.23 Aligned_cols=123 Identities=25% Similarity=0.341 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCEEE
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-KDAIVGLPGVTGLSIEQRKRLTIAVELVA---NPSIIF 869 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~lSgGerqrv~ia~aL~~---~p~ill 869 (1293)
++||.|.+.|...+. .. ....++++.+||... .++.+ +.||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 478888887764431 11 124578899999753 45544 3799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee-----cCcEEEEeCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGQVIYSGPL 932 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~~G~~~~~g~~ 932 (1293)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ....+|+++.|. ++|++++.|++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999864 457799999993 47999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=327.04 Aligned_cols=221 Identities=24% Similarity=0.314 Sum_probs=170.8
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC---CceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~---~~~~G~i~~~g 770 (1293)
.+.++|+++.. +++.+|+++||++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~-------------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYY-------------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEe-------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 46677776543 345699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC---------CCC-HHHHHHHHHHHHHHcCCcccc
Q 000773 771 FPKKQ-----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAK---------EVS-KEDKIIFVEEVMDLVELESLK 835 (1293)
Q Consensus 771 ~~~~~-----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~---------~~~-~~~~~~~~~~~l~~l~l~~~~ 835 (1293)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+...+.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 123567999999998887 49999998764321100 011 122234578889999884321
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHh
Q 000773 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 915 (1293)
Q Consensus 836 ~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 915 (1293)
+.... ..+.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 11111 12357999999999999999999999999999999999999999999999976 589999999975 4677899
Q ss_pred Hhh-eeecCcEEEEeCCC
Q 000773 916 ELL-LLKRGGQVIYSGPL 932 (1293)
Q Consensus 916 ~v~-~l~~~G~~~~~g~~ 932 (1293)
+++ +|. +|++++.|+.
T Consensus 268 ~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDT 284 (305)
T ss_pred EEEEEec-CCEEEEeCCH
Confidence 975 555 5899999885
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=295.93 Aligned_cols=191 Identities=24% Similarity=0.369 Sum_probs=159.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP----QKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||+|||||||+|+|..++. +|+|.++|++++.... +.-++||||....|+.|||+|||..++....
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~ 107 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence 58999999999999999999999986 8999999999987654 3458999999999999999999998765432
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHh-CCccccCcccCCCcccccccccchhhHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKIL-GLDICKDTIVGDEMNRGISGGQKKRVTT 155 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1293)
... . .+...+.+.+.| .|.+.++++-|+ |||||||-++|
T Consensus 108 ~~~-~----------------------------------~~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAi 147 (237)
T COG0410 108 DKE-A----------------------------------QERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAI 147 (237)
T ss_pred ccc-c----------------------------------ccccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHHH
Confidence 100 0 000022333333 244445666665 99999999999
Q ss_pred HHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 156 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 156 a~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
||||+++|++|+|||||.||-|.-..+|++.|+++.++.+.||+++ .|....+.+.+||.++|.+|++++.|+.+++.+
T Consensus 148 aRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLV-EQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLV-EQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred HHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEE-eccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999988767788885 899999999999999999999999999998853
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=321.61 Aligned_cols=195 Identities=26% Similarity=0.385 Sum_probs=156.0
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCH
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
.+++|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 699999999999999999999999999999999998763 57999999976532 234567999999998876 699
Q ss_pred HHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 798 KESLIYSAFLRLAKEVSKEDKI-----IFVEEVMDLV--ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
+||+.+... .....+.. ..+++.++.+ ++.+..+.. +..||||||||++||+||+.+|++++|
T Consensus 93 ~enl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRP-----GATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999976421 11111111 1123444444 454444443 347999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||||+|||+.++..+.+.|+++++ |+|||++||+++ ++ ..+|++++|.+ |+++..|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 999999999999999999999864 899999999975 44 45999999985 889888774
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=304.25 Aligned_cols=190 Identities=27% Similarity=0.433 Sum_probs=166.6
Q ss_pred ceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-------hcccceEEEEccCCCCCCCCCH
Q 000773 725 EVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-------ETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 725 ~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
++++..+.-.++||-|+||||||||+|+|+|...+ .+|.|.+||....+ ...+|++|||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP--deG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP--DEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc--cccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 57888877579999999999999999999998774 48999999975321 1246789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000773 798 KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgL 877 (1293)
+.||.|+.... .. ...+++.+.+|+.++.++... .|||||||||+|+|||+++|++|+||||.++|
T Consensus 94 rgNL~YG~~~~-----~~----~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS-----MR----AQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc-----ch----HhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999975421 11 235789999999999999866 69999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 878 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 878 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|...+.+++-.|++++++ ...|+.+||.++ |+..++|++++|.+ |+|...|+.
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~ 213 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPL 213 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcH
Confidence 999999999999999977 889999999975 79999999999985 999999996
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=332.20 Aligned_cols=192 Identities=22% Similarity=0.310 Sum_probs=161.2
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKE 799 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 799 (1293)
+.+|+|+||++++||++||+|||||||||||++|+|..++ .+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 4699999999999999999999999999999999998763 479999998641 1222345667899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000773 800 SLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879 (1293)
Q Consensus 800 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~ 879 (1293)
|+.+..... ..+.++..++++++++.+++.+..++.++ .||||||||++|||||+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 998754322 12334444557789999999887777654 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 880 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 880 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
.++..+.+.|++++++|+|||++||+++ .+.+.+|++++|.+ |++++.|+++
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999998877999999999975 56778999999985 8999998864
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=330.31 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=183.0
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC--ceeEEEEEcCc
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG--YIEGDIRISGF 771 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~--~~~G~i~~~g~ 771 (1293)
-++.+|++...... .+...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~---------~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATD---------GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecC---------CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 35677776554321 12347999999999999999999999999999999999976533 35799999998
Q ss_pred cCCh---h----cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000773 772 PKKQ---E----TFARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842 (1293)
Q Consensus 772 ~~~~---~----~~~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 842 (1293)
+... . .+.+.++|++|++ .+.|-+|+.+.+.-....+.. .+.++..+++.++++.+||.+.... ..
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6421 1 1336799999996 467789999888765554432 3367777889999999999876655 22
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheee
Q 000773 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 843 ~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
.+++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.++ |.++|++|||+. -+.+.+||+++|.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 34589999999999999999999999999999999999999999999999854 999999999986 3778899999998
Q ss_pred cCcEEEEeCCCC
Q 000773 922 RGGQVIYSGPLG 933 (1293)
Q Consensus 922 ~~G~~~~~g~~~ 933 (1293)
+ |++++.|+.+
T Consensus 230 ~-G~iVE~G~~~ 240 (539)
T COG1123 230 K-GEIVETGPTE 240 (539)
T ss_pred C-CEEEEecCHH
Confidence 5 9999999964
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=307.09 Aligned_cols=177 Identities=25% Similarity=0.339 Sum_probs=151.5
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~ 794 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 87 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPE 87 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEEeccCcccccC
Confidence 3456799999999999999999999999999999999998653 57999999987532 2234678999999989899
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
+|+.||+.+....+. . + .+.++++++.+++.+..++.++ .||||||||++||+|++.+|++++|||||
T Consensus 88 ~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 88 LSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred CcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999987643321 1 1 2346789999999887777654 79999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000773 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 907 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 907 (1293)
+|||+.++..+.+.|++++++|.|||++||++.
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 156 TALDKAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 999999999999999998777999999999874
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=315.24 Aligned_cols=195 Identities=24% Similarity=0.421 Sum_probs=159.1
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 469999999999999999999999999999999999865 347999999986532 223567999999998876 69
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG------LPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
|.||+.+.. . .... ..+.++++.+++.+..+..+. ......||||||||++||+||+.+|++|+|
T Consensus 94 v~e~l~~~~--~---~~~~----~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGA--P---LADD----ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCC--C---CCCH----HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999987531 1 1111 235677888888776665431 112357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||||+|||+.++..+.+.|++++++ +|||++||+++ ..+.+|++++|.+ |++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-CeEeecC
Confidence 9999999999999999999998764 89999999975 3478999999985 8887654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=318.36 Aligned_cols=208 Identities=24% Similarity=0.292 Sum_probs=165.6
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCC--C-CceeEEEEEcCccCCh-----hcccceEEEEccCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIRISGFPKKQ-----ETFARISGYCEQND 789 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~--~-~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~ 789 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|.++.. ...++.++|++|++
T Consensus 14 ~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 34569999999999999999999999999999999999643 1 1257999999987532 23456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 790 IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 790 ~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
.+++. |+.||+.+..... .....+...+++.++++.+|+.+....... .....||||||||++|||||+.+|++|+
T Consensus 94 ~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lll 169 (250)
T PRK14266 94 NPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLD-KSALGLSGGQQQRLCIARTIAVSPEVIL 169 (250)
T ss_pred ccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88875 9999998754322 111223334567888999988542111111 1245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++...+|++++|.+ |++++.|+.
T Consensus 170 lDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14266 170 MDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLT 229 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCH
Confidence 9999999999999999999999864 899999999975 57777888888875 899998875
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=317.92 Aligned_cols=209 Identities=26% Similarity=0.293 Sum_probs=162.8
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---c-ccceEEEEccCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---T-FARISGYCEQNDIHSP 793 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~ 793 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.... . .++.++|++|++.+++
T Consensus 12 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (248)
T PRK09580 12 EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIP 91 (248)
T ss_pred CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhcc
Confidence 34569999999999999999999999999999999999742113579999999875321 1 2346899999999888
Q ss_pred CCCHHHHHHHHHH-hcCC-C--CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 000773 794 QVTVKESLIYSAF-LRLA-K--EVSKEDKIIFVEEVMDLVELE-SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSII 868 (1293)
Q Consensus 794 ~lTv~e~l~~~~~-~~~~-~--~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~il 868 (1293)
.+|+.+++.+... ++.. . .....+...++++.++.+++. +..++.+. +.|||||||||+|||||+.+|++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~il 167 (248)
T PRK09580 92 GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELC 167 (248)
T ss_pred chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEE
Confidence 8888776653211 1110 0 011222345577889999984 44444432 269999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH-HhHhheeecCcEEEEeCCC
Q 000773 869 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 869 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~~G~~~~~g~~ 932 (1293)
+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +|++++.|+.
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 168 ILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CCeEEEeCCH
Confidence 999999999999999999999999877899999999965 34444 79999987 5899999875
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=286.77 Aligned_cols=228 Identities=25% Similarity=0.313 Sum_probs=190.9
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++.+|+.+++.. ++.||++||++|++||+.+||||||||||||.++|+|.+....++|+|.++|+++.
T Consensus 4 L~I~dLhv~v~~------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~ 71 (251)
T COG0396 4 LEIKDLHVEVEG------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL 71 (251)
T ss_pred eEEeeeEEEecC------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccc
Confidence 567777776631 25899999999999999999999999999999999998876677899999999864
Q ss_pred h----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCH
Q 000773 775 Q----ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSI 849 (1293)
Q Consensus 775 ~----~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSg 849 (1293)
. +..+.-+...+|.|.-+|..|+.+.|..+...+........+....+++.++.+++.. ..++.+.. ++||
T Consensus 72 ~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSG 147 (251)
T COG0396 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFSG 147 (251)
T ss_pred cCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcCc
Confidence 3 2334557889999999999999999987765433221112344556889999999987 67777663 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHH--hHhheeecCcEEE
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLLKRGGQVI 927 (1293)
Q Consensus 850 Gerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~v~~l~~~G~~~ 927 (1293)
|||||..|+..++.+|++.+||||-||||..+-+.|-+.+.++++.|.+++++||.. .+.++. |++.+|.+ |+|+
T Consensus 148 GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrIv 224 (251)
T COG0396 148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRIV 224 (251)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999999999999974 577777 99999985 9999
Q ss_pred EeCCCCCChhHHHHHHHhC
Q 000773 928 YSGPLGRNSHKVIEYYEAI 946 (1293)
Q Consensus 928 ~~g~~~~~~~~~~~~~~~~ 946 (1293)
..|.+ ++.+.++..
T Consensus 225 ~sG~~-----el~~~le~~ 238 (251)
T COG0396 225 KSGDP-----ELAEELEEK 238 (251)
T ss_pred ecCCH-----HHHHHHHHh
Confidence 99985 567777765
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=307.03 Aligned_cols=184 Identities=24% Similarity=0.337 Sum_probs=155.1
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQV 795 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~l 795 (1293)
+++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|+..+++.+
T Consensus 12 ~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 89 (200)
T PRK13540 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP--EKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYL 89 (200)
T ss_pred CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeeEEECCCccccCHHHHHhheEEeccccccCcCC
Confidence 345699999999999999999999999999999999998763 57999999987642 23456799999999888999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
||+||+.+.... . .. ...++++++.+++.+..++.++ .||||||||++|||||+.+|++|+|||||+
T Consensus 90 tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 90 TLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred CHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999999875321 1 11 1246889999999876666554 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhh
Q 000773 876 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 918 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 918 (1293)
|||+.++..+.+.|++++++|+|||++||++. ....+|..+
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999998777999999999964 445566543
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=307.38 Aligned_cols=192 Identities=25% Similarity=0.350 Sum_probs=170.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-------QKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+.+|||-||||||||+++|.++++|+ +|+|.++|.++..... ++.+++|+|+..++|..||.||..|+.+
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 47899999999999999999999998 9999999998765432 3578999999999999999999999998
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
.++.+.. +.+++..+.|+..||+...+.... +||||+||||
T Consensus 133 v~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp~-----eLSGGMqQRV 173 (386)
T COG4175 133 VQGVPKA----------------------------------EREERALEALELVGLEGYADKYPN-----ELSGGMQQRV 173 (386)
T ss_pred ecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCcc-----cccchHHHHH
Confidence 8765321 112345678999999988877664 5999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
.|||||+.+|+|+++|||+|+|||--+.++.+.|.++.++.++||+.+ +|+.+|++++.|||.+|++|+|+..|+++|+
T Consensus 174 GLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFi-tHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 174 GLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI-THDLDEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEE-ecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999988889999995 6788999999999999999999999999999
Q ss_pred HH
Q 000773 234 LE 235 (1293)
Q Consensus 234 ~~ 235 (1293)
..
T Consensus 253 l~ 254 (386)
T COG4175 253 LL 254 (386)
T ss_pred Hc
Confidence 74
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=312.03 Aligned_cols=191 Identities=25% Similarity=0.305 Sum_probs=155.8
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEc--Cc--cCCh---hc----ccceEEEEccC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS--GF--PKKQ---ET----FARISGYCEQN 788 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~--g~--~~~~---~~----~~~~~~~v~q~ 788 (1293)
+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++ |. +... .. .++.++|++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 4699999999999999999999999999999999998663 47999998 42 3211 11 23468999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
+.+++.+||+|++.+..... ....++..+++.++++.+|+.+ ..+..+ .+||||||||++||+||+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP-----ATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999998754322 1223333456788999999975 335443 47999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheee
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999877999999999953 3556789887763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=303.13 Aligned_cols=160 Identities=30% Similarity=0.426 Sum_probs=142.1
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-----hcccceEEEEccCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-----ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~~v~q~~~~~ 792 (1293)
+++.+++++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 11 ~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (178)
T cd03229 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF 88 (178)
T ss_pred CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccC
Confidence 34569999999999999999999999999999999999866 357999999987532 23456799999999998
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDE 872 (1293)
+.+|++||+.+. ||||||||++||+||+.+|++++|||
T Consensus 89 ~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDE 126 (178)
T cd03229 89 PHLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126 (178)
T ss_pred CCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 899999987531 89999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 873 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
||+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|++
T Consensus 127 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 99999999999999999999877 899999999975 46668999999975
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=282.51 Aligned_cols=185 Identities=24% Similarity=0.381 Sum_probs=158.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
++-|+||||||||||||+|.+..+|+ +|+|.+||.+++... .++++|+|+||..+++..||.||+.|..+.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 46789999999999999999999998 999999999986543 357899999999999999999999999877
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+... .+.++.+.++|+..||.+..+... .+|||||||||+
T Consensus 107 ~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSGGEQQRva 147 (223)
T COG2884 107 IGKPP----------------------------------REIRRRVSEVLDLVGLKHKARALP-----SQLSGGEQQRVA 147 (223)
T ss_pred cCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcCc-----cccCchHHHHHH
Confidence 65321 112445778899999998776544 569999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcC
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~ 229 (1293)
||||++.+|++|+.||||..||+..+.++++++.++.+ .|+||++++ |+..-+..+-.|++.|++|+++....
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~AT-Hd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMAT-HDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEe-ccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999976 699999975 55666666778999999999986543
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=318.35 Aligned_cols=215 Identities=22% Similarity=0.248 Sum_probs=171.1
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCC--C-ceeEEEEEcC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIRISG 770 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~--~-~~~G~i~~~g 770 (1293)
.+.++|+++.. +++.+|+|+||++++||+++|+||||||||||+++|+|...+ + +.+|+|.++|
T Consensus 16 ~l~~~~l~~~~-------------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 16 KSEVNKLNFYY-------------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred eEEEEEEEEEE-------------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 46778877644 335699999999999999999999999999999999997653 1 2589999998
Q ss_pred ccCC-------hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccc
Q 000773 771 FPKK-------QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE----SLKDAIV 839 (1293)
Q Consensus 771 ~~~~-------~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----~~~~~~~ 839 (1293)
.+.. ...+++.++|++|++.+++. |++||+.+...... ....+...+.++++++.+++. +..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 158 (265)
T PRK14252 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLGDL- 158 (265)
T ss_pred ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHhCC-
Confidence 7642 12345679999999998886 99999987643221 111122234567788888774 223333
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhhe
Q 000773 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 919 (1293)
Q Consensus 840 ~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 919 (1293)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 159 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~ 232 (265)
T PRK14252 159 ----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAY 232 (265)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEE
Confidence 347999999999999999999999999999999999999999999999875 699999999975 56678999999
Q ss_pred eecCcEEEEeCCC
Q 000773 920 LKRGGQVIYSGPL 932 (1293)
Q Consensus 920 l~~~G~~~~~g~~ 932 (1293)
|.+ |+++..|+.
T Consensus 233 l~~-G~i~~~g~~ 244 (265)
T PRK14252 233 MYM-GELIEFGAT 244 (265)
T ss_pred EEC-CEEEEeCCH
Confidence 975 899998875
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=319.72 Aligned_cols=196 Identities=29% Similarity=0.434 Sum_probs=153.8
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999865 357999999977532 223456999999988876 69
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI-------VGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
|+||+.+.... ...++ .++.++..++.+..+.. .. ..+..|||||||||+||++|+.+|++|+
T Consensus 93 v~e~l~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPD-----ATDEE----VEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCC-----CCHHH----HHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999764211 11111 12233333332221111 11 1235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||||+|||+.++..+.+.|++++ +|+|||++||+++ ++ +.+|++++|.+ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 7899999999975 34 57999999985 899988874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.79 Aligned_cols=247 Identities=23% Similarity=0.325 Sum_probs=198.1
Q ss_pred cccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEcc
Q 000773 712 EQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQ 787 (1293)
Q Consensus 712 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q 787 (1293)
+..+.+++..+++|||+++++||+.||+|.||||||||+++|.|...| .+|+|.++|++..- ...+..||+|.|
T Consensus 9 ~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P--~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQ 86 (501)
T COG3845 9 GITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP--DSGEIRVDGKEVRIKSPRDAIRLGIGMVHQ 86 (501)
T ss_pred ccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC--CcceEEECCEEeccCCHHHHHHcCCcEEee
Confidence 344556778899999999999999999999999999999999998774 58999999987532 334567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 788 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
+..+.|++||.||+..+.........+.++..++++++.+..|+.--.|.+++ .||-||||||.|-++|.++|++
T Consensus 87 HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG~qQRVEIlKaLyr~a~i 161 (501)
T COG3845 87 HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRGARL 161 (501)
T ss_pred ccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcchhHHHHHHHHHhcCCCE
Confidence 99999999999999887543222234556667789999999999888888877 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCC-CCC-ChhHHHHHHHh
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP-LGR-NSHKVIEYYEA 945 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~-~~~-~~~~~~~~~~~ 945 (1293)
|+|||||+-|-|...+++++++++++++|+|||++||..+ |+.+.+||+.+|.+ |+++-.-+ ..+ ..+++.+..-.
T Consensus 162 LILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt~~~~~~~t~~ela~lMvG 239 (501)
T COG3845 162 LILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGTVDPVAETTEEELAELMVG 239 (501)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEeeecCCCCCCHHHHHHHhcC
Confidence 9999999999999999999999999999999999999986 79999999999975 88876555 322 33344443321
Q ss_pred -CCCCCCCCCCCCcccchhhccc
Q 000773 946 -IPGVPKIKEKYNPATWMLEVSS 967 (1293)
Q Consensus 946 -~~~~~~~~~~~n~a~~~~~~~~ 967 (1293)
....+.......|.+.++++.+
T Consensus 240 ~~v~~~~~~~~~~pg~~vL~V~~ 262 (501)
T COG3845 240 REVVLRVVKPPSTPGEVVLEVED 262 (501)
T ss_pred CccccccccCCCCCCCeEEEEee
Confidence 1011111234556677776643
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=317.22 Aligned_cols=210 Identities=20% Similarity=0.307 Sum_probs=171.0
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
+.++|+++.... +...+|+|+|++|++||+++|+||||||||||+++|+|... .+|+|.++|.++.
T Consensus 3 i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~ 68 (275)
T cd03289 3 MTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWN 68 (275)
T ss_pred EEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhh
Confidence 577888765521 23459999999999999999999999999999999999865 3699999998764
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCCC
Q 000773 775 Q---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL------PGVT 845 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~~~ 845 (1293)
. ..+++.++|++|++.+++. |++||+.... .... +.+.+.++.+||.+..+..++. ++..
T Consensus 69 ~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~ 137 (275)
T cd03289 69 SVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGC 137 (275)
T ss_pred hCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCC
Confidence 2 2356679999999999875 9999996321 1122 2356788889998766655431 1234
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 846 ~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
.||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|+++ ....+|++++|.+ |+
T Consensus 138 ~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G~ 213 (275)
T cd03289 138 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-NK 213 (275)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-Ce
Confidence 699999999999999999999999999999999999999999999875 4899999999974 4456999999975 89
Q ss_pred EEEeCCCC
Q 000773 926 VIYSGPLG 933 (1293)
Q Consensus 926 ~~~~g~~~ 933 (1293)
+++.|+++
T Consensus 214 i~~~g~~~ 221 (275)
T cd03289 214 VRQYDSIQ 221 (275)
T ss_pred EeecCCHH
Confidence 99999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=326.84 Aligned_cols=192 Identities=26% Similarity=0.385 Sum_probs=162.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.++..+..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 99999999877532 12456899999999999999999999865533210
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
. . +.+..++++++.+||++..++.+++ |||||||||+||+|
T Consensus 98 ~--------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 138 (302)
T TIGR01188 98 K--------------------D--------------EAEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAAS 138 (302)
T ss_pred H--------------------H--------------HHHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHH
Confidence 0 0 0112356789999999888887765 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEF 236 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~ 236 (1293)
|+.+|++++|||||+|||+.++..+++.|+++++ .|+|+|++. |..+++.+.||++++|++|++++.|+++++.+.
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~s-H~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTT-HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEC-CCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999999999999999999975 488999975 456789999999999999999999999887653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=315.29 Aligned_cols=192 Identities=27% Similarity=0.366 Sum_probs=158.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 47999999999999999999999987 999999998875422 245689999999999999999999886432
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.... +.. +.+..++++++.+||.+..++.+++ |||||||||+
T Consensus 105 ~~~~-------------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~ 146 (235)
T cd03261 105 HTRL-------------------SEE--------------EIREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRVA 146 (235)
T ss_pred ccCC-------------------CHH--------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHH
Confidence 1000 000 0012346678999998877777654 9999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||+||+.+|++++|||||+|||+.++..+++.|++++++.++|+|++.| ..+++.++||++++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH-~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTH-DLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEec-CHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999999999999999999999987655889988755 456788899999999999999999987753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=316.99 Aligned_cols=180 Identities=21% Similarity=0.261 Sum_probs=137.1
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKES 800 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 800 (1293)
+++.+++..++.-+..+++|+||+||||++|++.|...+ ..|.+.+++ +.+++|-.|...-+-++.|-+-
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNAV 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc--------cceecchhHhhhhHHHHHhHHH
Confidence 588999999999999999999999999999999996553 356665543 4568999998665545555442
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000773 801 LIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879 (1293)
Q Consensus 801 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~ 879 (1293)
.+....+ ...++++ +++-+..+||.. .+... +.+||||||-||++|.....+|.+|+|||||+.||-
T Consensus 448 -d~~~~~~--pG~~~ee----~r~hl~~~Gl~g~la~~s-----i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 448 -DFMEKSF--PGKTEEE----IRRHLGSFGLSGELALQS-----IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDR 515 (582)
T ss_pred -HHHHHhC--CCCCHHH----HHHHHHhcCCCchhhhcc-----ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccH
Confidence 2322222 2334443 467788899864 33322 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEE
Q 000773 880 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927 (1293)
Q Consensus 880 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~ 927 (1293)
.+-..+.+.|+.. +..||++||+.+ -+-..|+.+.+..+ |++.
T Consensus 516 dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~-g~vt 558 (582)
T KOG0062|consen 516 DSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVED-GKVT 558 (582)
T ss_pred HHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcC-CcEE
Confidence 9999998888775 468999999854 35566788888875 6654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=349.39 Aligned_cols=206 Identities=23% Similarity=0.285 Sum_probs=169.1
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcC-----------------------ccC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG-----------------------FPK 773 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g-----------------------~~~ 773 (1293)
++++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++| .++
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 10 FDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred ECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccc
Confidence 345679999999999999999999999999999999999741013579999872 111
Q ss_pred ----------Ch---hcccceEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000773 774 ----------KQ---ETFARISGYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839 (1293)
Q Consensus 774 ----------~~---~~~~~~~~~v~q~-~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 839 (1293)
.. ...++.++|++|+ +.+++.+||+||+.+..... ....++..+++.++++.+|+.+..++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 166 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIA 166 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCc
Confidence 00 1134568999997 67888999999998864332 1233444567889999999988777765
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhh
Q 000773 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELL 918 (1293)
Q Consensus 840 ~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~ 918 (1293)
+ +|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+.+.+|+++
T Consensus 167 ~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~-~~~~~~d~i~ 240 (520)
T TIGR03269 167 R-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE-VIEDLSDKAI 240 (520)
T ss_pred c-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEE
Confidence 4 79999999999999999999999999999999999999999999999654 899999999975 4667899999
Q ss_pred eeecCcEEEEeCCC
Q 000773 919 LLKRGGQVIYSGPL 932 (1293)
Q Consensus 919 ~l~~~G~~~~~g~~ 932 (1293)
+|.+ |++++.|+.
T Consensus 241 ~l~~-G~i~~~g~~ 253 (520)
T TIGR03269 241 WLEN-GEIKEEGTP 253 (520)
T ss_pred EEeC-CEEeeecCH
Confidence 9985 899888875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=314.18 Aligned_cols=197 Identities=25% Similarity=0.377 Sum_probs=155.7
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+.+++|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++. |
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 92 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-T 92 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-H
Confidence 4599999999999999999999999999999999998763 47999999976532 2345679999999988775 9
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc------cCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV------GLPGVTGLSIEQRKRLTIAVELVANPSIIFM 870 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~------~~~~~~~lSgGerqrv~ia~aL~~~p~illl 870 (1293)
++||+.+... ..... .+++.++.+++.+..+... ....+.+|||||||||+||++|+.+|++++|
T Consensus 93 v~~~~~~~~~-----~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llll 163 (229)
T cd03254 93 IMENIRLGRP-----NATDE----EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILIL 163 (229)
T ss_pred HHHHHhccCC-----CCCHH----HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976421 11111 2334445555443332221 0112457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 871 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 871 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
||||+|||+.++..+++.|++++ +|+|||++||+++ ++ ..+|++++|.+ |++++.|+.
T Consensus 164 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g~~~~~~~~ 221 (229)
T cd03254 164 DEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-GKIIEEGTH 221 (229)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999986 5899999999975 34 56999999985 899887764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=309.10 Aligned_cols=194 Identities=26% Similarity=0.394 Sum_probs=159.2
Q ss_pred eeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCC--CCCHHHHHHHHH
Q 000773 728 SAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSP--QVTVKESLIYSA 805 (1293)
Q Consensus 728 ~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~--~lTv~e~l~~~~ 805 (1293)
|++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.+++ .+|+.||+.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP--AKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 46899999999999999999999999998663 47999999987542 3467999999987643 489999997743
Q ss_pred HhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 000773 806 FLRLA-KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884 (1293)
Q Consensus 806 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~ 884 (1293)
..... ......+...++.++++.+++.+..++.++ +||||||||++||++|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 001112223457889999999877776654 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 885 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+.+.|++++++|+|||++||+++ ++.+.+|+++++ + |++++.|+.+
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 99999999877999999999975 577889999988 5 8999998865
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=330.63 Aligned_cols=191 Identities=24% Similarity=0.309 Sum_probs=163.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.++||+|++.+|+.+||.||+.|+.+..+..
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~- 122 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP- 122 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC-
Confidence 47999999999999999999999988 999999999876533 3567999999999999999999999986532110
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.. +.++.++++++.+||.+..++.+. +|||||||||+|||||
T Consensus 123 -------------------~~--------------~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~QRVaLARAL 164 (377)
T PRK11607 123 -------------------KA--------------EIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQRVALARSL 164 (377)
T ss_pred -------------------HH--------------HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 00 012245678999999887776664 5999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||++||..++..+.+.|+++.++.+.|+|+++ |+..++..++||+++|++|+++..|+++++.
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vT-Hd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT-HDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc-CCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999999999999999998776789999974 5567899999999999999999999998874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=328.00 Aligned_cols=195 Identities=26% Similarity=0.380 Sum_probs=163.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|++.+++.+||+||+.|+.+......
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 47999999999999999999999988 999999999876433 24679999999999999999999999764311000
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
. . +.. +.++.++++++.+||++..|+.+. .|||||||||+|||||
T Consensus 107 ~---~-------------~~~--------------~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalArAL 151 (353)
T PRK10851 107 R---P-------------NAA--------------AIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQKQRVALARAL 151 (353)
T ss_pred C---C-------------CHH--------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHH
Confidence 0 0 000 012245678999999887777665 5999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++ +|+..++..++|||++|++|++++.|+++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~v-THd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFV-THDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999987668899886 45567899999999999999999999998874
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=314.55 Aligned_cols=197 Identities=26% Similarity=0.354 Sum_probs=163.2
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.. +++.+|+++||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 5 l~~~~l~~~~-------------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~--- 66 (251)
T PRK09544 5 VSLENVSVSF-------------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK--- 66 (251)
T ss_pred EEEeceEEEE-------------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc---
Confidence 5666666543 345699999999999999999999999999999999998763 4799999862
Q ss_pred hhcccceEEEEccCCCCCCCC--CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000773 775 QETFARISGYCEQNDIHSPQV--TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852 (1293)
Q Consensus 775 ~~~~~~~~~~v~q~~~~~~~l--Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGer 852 (1293)
..++|++|++.+++.+ |+.+++.+. .... .+++.++++.+|+.+..++.+. .||||||
T Consensus 67 -----~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~ 126 (251)
T PRK09544 67 -----LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPMQ-----KLSGGET 126 (251)
T ss_pred -----cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCChh-----hCCHHHH
Confidence 3589999998877764 777776431 1111 1236788999999887777654 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCC
Q 000773 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931 (1293)
Q Consensus 853 qrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~ 931 (1293)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. + +++..|+
T Consensus 127 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g~ 203 (251)
T PRK09544 127 QRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSGT 203 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeCC
Confidence 9999999999999999999999999999999999999998766 899999999975 5678899999994 4 6888887
Q ss_pred C
Q 000773 932 L 932 (1293)
Q Consensus 932 ~ 932 (1293)
.
T Consensus 204 ~ 204 (251)
T PRK09544 204 P 204 (251)
T ss_pred H
Confidence 5
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=278.48 Aligned_cols=200 Identities=23% Similarity=0.371 Sum_probs=168.8
Q ss_pred cccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccC
Q 000773 712 EQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQN 788 (1293)
Q Consensus 712 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~ 788 (1293)
+++...++.++|+++||++++||..+|.||||||||||+|+++...++ .+|.+++.|++.+. ..+++.++||.|.
T Consensus 8 q~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 8 QVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred HHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcC
Confidence 334444567899999999999999999999999999999999998774 58999999998653 5678889999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK-DAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 789 ~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
+.+++. ||++|+.|.-.+|..+. ++ ....+.++.+++.+.. ++. +..||||||||++|+|.|..-|+|
T Consensus 86 paLfg~-tVeDNlifP~~~r~rr~-dr----~aa~~llar~~l~~~~L~k~-----it~lSGGE~QriAliR~Lq~~P~I 154 (223)
T COG4619 86 PALFGD-TVEDNLIFPWQIRNRRP-DR----AAALDLLARFALPDSILTKN-----ITELSGGEKQRIALIRNLQFMPKI 154 (223)
T ss_pred cccccc-chhhccccchHHhccCC-Ch----HHHHHHHHHcCCchhhhcch-----hhhccchHHHHHHHHHHhhcCCce
Confidence 999986 99999999877765332 11 2356788899987632 332 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHHHHhHhheeecCcEE
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~ 926 (1293)
|+||||||.||+.+++.|-++|.++. ++.+.|+.+||+++ +..+.+|+++-+.. |++
T Consensus 155 LLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~-G~~ 212 (223)
T COG4619 155 LLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP-GHA 212 (223)
T ss_pred EEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc-Ccc
Confidence 99999999999999999999999987 56899999999986 56889999999985 553
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=361.53 Aligned_cols=209 Identities=28% Similarity=0.364 Sum_probs=174.9
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|++++.+. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEc
Confidence 5899999987631 235699999999999999999999999999999999998763 589999999986
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
++ ..+++.+|||+|++.+++. |++||+.++. + .+++ .+.++++..|+.+. .|+.+|+.
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~- 585 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG- 585 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 53 4567889999999999865 9999998631 1 2332 25677777777643 35666643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++ ++|+|+++|++ +..+.+|++++|++
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~--~~i~~~D~Iivl~~- 659 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRL--STIRNADRIYVLDA- 659 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecCh--HHHHcCCEEEEEEC-
Confidence 4679999999999999999999999999999999999999999999876 58999999996 46678999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|+++..|+.+
T Consensus 660 G~iv~~G~~~ 669 (686)
T TIGR03797 660 GRVVQQGTYD 669 (686)
T ss_pred CEEEEECCHH
Confidence 9999999853
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=348.14 Aligned_cols=204 Identities=22% Similarity=0.278 Sum_probs=168.8
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCC---ceeEEEEEcCccCChh------cc-cceEEEEccCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIRISGFPKKQE------TF-ARISGYCEQND 789 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~---~~~G~i~~~g~~~~~~------~~-~~~~~~v~q~~ 789 (1293)
+.+|+||||++++||++||+||||||||||+++|+|..++. +.+|+|.++|.++... .. ++.+||++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999976531 2579999999875321 11 24699999997
Q ss_pred C--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc---ccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000773 790 I--HSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL---KDAIVGLPGVTGLSIEQRKRLTIAVELVAN 864 (1293)
Q Consensus 790 ~--~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~~~~~~~~lSgGerqrv~ia~aL~~~ 864 (1293)
. +.+.+|++|++.+...... ..+..+..++++++++.+|+.+. .++.++ +|||||||||+|||||+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~-----~LSgGe~qrv~iAraL~~~ 174 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDYPH-----QLSGGERQRVMIAMALLTR 174 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhCCc-----ccCHHHHHHHHHHHHHhcC
Confidence 4 6678899999876432211 12344445668899999999763 455544 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 865 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 865 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|++|+|||||+|||+.++..++++|++++++ |+|||++||+++ .+...+|++++|.+ |++++.|+.
T Consensus 175 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~ 241 (529)
T PRK15134 175 PELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN-GRCVEQNRA 241 (529)
T ss_pred CCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999765 899999999975 56778999999985 899998875
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=300.59 Aligned_cols=160 Identities=24% Similarity=0.466 Sum_probs=141.5
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEccCC---CCCCC
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQND---IHSPQ 794 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q~~---~~~~~ 794 (1293)
+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++ .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 89999999999999999999999999999999998763 47999999987643 12356799999984 57888
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
+|++||+.+... ||||||||++||+||+.+|++++|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999875310 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
+|||+.++..+.+.|++++++|+|+|+++|+++ ++.+.+|++++|.+ |+
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 999999999999999999777899999999975 57778999999975 65
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=351.48 Aligned_cols=219 Identities=20% Similarity=0.280 Sum_probs=176.7
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC-
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK- 773 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~- 773 (1293)
++.+|+++..... .+...+|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|...
T Consensus 13 l~v~~l~~~y~~~---------~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~~ 81 (623)
T PRK10261 13 LAVENLNIAFMQE---------QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLLR 81 (623)
T ss_pred EEEeceEEEecCC---------CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEec
Confidence 6778887655311 1134699999999999999999999999999999999998653 468888887532
Q ss_pred ------------Chh---cc-cceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--
Q 000773 774 ------------KQE---TF-ARISGYCEQND--IHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-- 833 (1293)
Q Consensus 774 ------------~~~---~~-~~~~~~v~q~~--~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-- 833 (1293)
... .. ++.+|||+|++ .+++.+||.||+.+...... ..+.++..+++.++++.+||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~ 159 (623)
T PRK10261 82 RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQ 159 (623)
T ss_pred cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChh
Confidence 111 11 24689999997 67889999999998754321 2334444567889999999953
Q ss_pred -cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHH
Q 000773 834 -LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIF 911 (1293)
Q Consensus 834 -~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~ 911 (1293)
..++.+. +|||||||||+||+||+.+|++|||||||++||+.++..+.++|++++++ |+|||++||+++ .+.
T Consensus 160 ~~~~~~~~-----~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~ 233 (623)
T PRK10261 160 TILSRYPH-----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVA 233 (623)
T ss_pred hHHhCCCc-----cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHH
Confidence 3455544 79999999999999999999999999999999999999999999999865 899999999975 567
Q ss_pred HHHhHhheeecCcEEEEeCCCC
Q 000773 912 EAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 912 ~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
+.+|++++|.+ |++++.|+.+
T Consensus 234 ~~adri~vl~~-G~i~~~g~~~ 254 (623)
T PRK10261 234 EIADRVLVMYQ-GEAVETGSVE 254 (623)
T ss_pred HhCCEEEEeeC-CeecccCCHH
Confidence 88999999985 8999888753
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=325.39 Aligned_cols=191 Identities=28% Similarity=0.380 Sum_probs=162.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+|++.+.....+..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 99999999887542 23567999999999999999999998755432110
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
. . +.+..++.+++.+||.+..++.+++ ||||||||++||+|
T Consensus 146 ~--------------------~--------------~~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~a 186 (340)
T PRK13536 146 T--------------------R--------------EIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARA 186 (340)
T ss_pred H--------------------H--------------HHHHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHHH
Confidence 0 0 0011245678899999888888865 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|+++|++++|||||+|||+.++..+++.|+++++ .|+|||++. |..+++.++||||++|++|++++.|+++++.+
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisS-H~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTT-HFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEC-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999976 589999975 55678999999999999999999999998865
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=330.36 Aligned_cols=191 Identities=22% Similarity=0.355 Sum_probs=162.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+||+.|+.+..+..
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 106 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 106 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCC-
Confidence 47999999999999999999999988 999999998876432 2456999999999999999999999876432110
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.. +.+..++++++.+||++..++.+++ |||||||||+|||||
T Consensus 107 -------------------~~--------------~~~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~QRvaLAraL 148 (369)
T PRK11000 107 -------------------KE--------------EINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTL 148 (369)
T ss_pred -------------------HH--------------HHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHHH
Confidence 00 0112356789999998877777754 999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|+++| ..+++..++|++++|++|+++..|+++++.
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTH-d~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998766889998755 556888999999999999999999998874
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=355.89 Aligned_cols=212 Identities=24% Similarity=0.354 Sum_probs=175.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|++|..+. +++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEEh
Confidence 5899999887531 235699999999999999999999999999999999998764 479999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 843 (1293)
++ ..+++.++|+||++.+++ -|++||+.++. +...++++ ++++++..|+.+ -.|+.+|..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~----i~~al~~~~l~~~i~~lp~Gldt~ig~~- 477 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSREQ----IEEAARMAYAMDFINKMDNGLDTVIGEN- 477 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHHH----HHHHHHHhCcHHHHHhcccccCceeCCC-
Confidence 53 356778999999999886 59999997631 11223332 556677766543 246667753
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||++ +..+.+|+|++|++
T Consensus 478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~~- 553 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVED- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC-
Confidence 46799999999999999999999999999999999999999999999875 479999999997 46788999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 554 g~i~e~g~~ 562 (582)
T PRK11176 554 GEIVERGTH 562 (582)
T ss_pred CEEEEeCCH
Confidence 899999985
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=355.54 Aligned_cols=211 Identities=28% Similarity=0.484 Sum_probs=175.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++|+|+++..+. ++++|+|+||+++|||.+||+||||||||||++.|.|..++ .+|+|.+||.++
T Consensus 328 ~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~dI 393 (567)
T COG1132 328 SIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGIDI 393 (567)
T ss_pred eEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEeh
Confidence 5899999887532 46799999999999999999999999999999999998764 589999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE-------LESLKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------l~~~~~~~~~~~~ 843 (1293)
++ ..+++.++||+|++.+|. -||+||+.++. .+.++++ +.++++..+ +.+..|+.+|. +
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~ee----i~~a~k~a~~~d~I~~lp~g~dt~vge-~ 462 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDEE----IEEALKLANAHEFIANLPDGYDTIVGE-R 462 (567)
T ss_pred hhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhChHHHHHhCcccccceecC-C
Confidence 54 456788999999999988 79999998752 1133433 333333332 33356888883 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++||||++++|++|+||||||+||+.+...+++.++++. +++|+|+++|+++ ....+|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~- 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN- 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC-
Confidence 56799999999999999999999999999999999999999999999876 5789999999975 5566999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|++++.|+.+
T Consensus 539 G~i~e~G~h~ 548 (567)
T COG1132 539 GRIVERGTHE 548 (567)
T ss_pred CEEEEecCHH
Confidence 8999999863
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=352.81 Aligned_cols=211 Identities=27% Similarity=0.433 Sum_probs=176.0
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+. +++.+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 338 ~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~i 404 (574)
T PRK11160 338 SLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQPI 404 (574)
T ss_pred eEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEh
Confidence 5899999886531 124699999999999999999999999999999999998763 579999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc------cccccCCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK------DAIVGLPGV 844 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~------~~~~~~~~~ 844 (1293)
++ ..+++.++||+|++.+++ .|++||+.++. + ..+++ .+.++++..++.+.. |+.+|. +.
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~~----~i~~al~~~~l~~~i~~p~GldT~vge-~g 473 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NASDE----ALIEVLQQVGLEKLLEDDKGLNAWLGE-GG 473 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-ccCHH----HHHHHHHHcCCHHHHcCccccCchhcC-CC
Confidence 53 356778999999998886 49999997642 1 22222 367788888887643 455554 34
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++ ....+|++++|++ |
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~-G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN-G 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-C
Confidence 6799999999999999999999999999999999999999999999885 4899999999975 4567999999985 8
Q ss_pred EEEEeCCC
Q 000773 925 QVIYSGPL 932 (1293)
Q Consensus 925 ~~~~~g~~ 932 (1293)
+++..|+.
T Consensus 550 ~i~~~g~~ 557 (574)
T PRK11160 550 QIIEQGTH 557 (574)
T ss_pred eEEEeCCH
Confidence 99999985
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=314.84 Aligned_cols=196 Identities=26% Similarity=0.404 Sum_probs=154.7
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++ .|
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 90 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DT 90 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-ch
Confidence 469999999999999999999999999999999999865 357999999986532 234567999999998875 69
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI-------VGLPGVTGLSIEQRKRLTIAVELVANPSIIF 869 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~~~~~lSgGerqrv~ia~aL~~~p~ill 869 (1293)
|+||+.+... ....++ +.+.++..++.+..+.. .. ...+.||||||||++||+||+.+|++|+
T Consensus 91 v~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~~~rl~la~aL~~~p~lll 160 (236)
T cd03253 91 IGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGEKQRVAIARAILKNPPILL 160 (236)
T ss_pred HHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999976421 111211 22333344433221111 11 1245799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCC
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 870 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|||||+|||+.+...+.+.|+++++ |+|||+++|+++ .+ ..+|++++|.+ |+++..|+.
T Consensus 161 lDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~i~~~~~~ 219 (236)
T cd03253 161 LDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GRIVERGTH 219 (236)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CEEEeeCCH
Confidence 9999999999999999999999876 999999999975 34 55999999985 899888764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=307.94 Aligned_cols=209 Identities=22% Similarity=0.330 Sum_probs=163.9
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++.... +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhH
Confidence 567777654421 12469999999999999999999999999999999999865 35799999998753
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc------cCCCCC
Q 000773 775 Q---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV------GLPGVT 845 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~------~~~~~~ 845 (1293)
. ..+++.++|++|++.+++ .||+||+.+.. .... ..+.+.++.+++.+..++.. ......
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~ 138 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGE 138 (221)
T ss_pred hCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 2 234567999999998775 59999986421 1122 22456677777665433210 011345
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 846 ~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++ ..+|++++|.+ |+
T Consensus 139 ~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 214 (221)
T cd03244 139 NLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLDK-GR 214 (221)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEEC-Ce
Confidence 8999999999999999999999999999999999999999999999864 689999999975 34 55999999985 89
Q ss_pred EEEeCC
Q 000773 926 VIYSGP 931 (1293)
Q Consensus 926 ~~~~g~ 931 (1293)
+++.|+
T Consensus 215 ~~~~~~ 220 (221)
T cd03244 215 VVEFDS 220 (221)
T ss_pred EEecCC
Confidence 988775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=285.58 Aligned_cols=211 Identities=24% Similarity=0.364 Sum_probs=177.8
Q ss_pred cccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcC-ccCCh---hc-ccceEEEEc
Q 000773 712 EQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG-FPKKQ---ET-FARISGYCE 786 (1293)
Q Consensus 712 ~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g-~~~~~---~~-~~~~~~~v~ 786 (1293)
++++++++.++|+++||++.|||+-+|+|||||||||++++|+|...+ ..|++.++| .++.. .. .+.-||--+
T Consensus 10 ~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp--~~G~v~f~g~~dl~~~~e~~IAr~GIGRKF 87 (249)
T COG4674 10 GVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP--QEGEVLFDGDTDLTKLPEHRIARAGIGRKF 87 (249)
T ss_pred ceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC--CcceEEEcCchhhccCCHHHHHHhccCccc
Confidence 334456778899999999999999999999999999999999997763 479999999 55432 12 234588999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHH
Q 000773 787 QNDIHSPQVTVKESLIYSAFLRLA------KEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVE 860 (1293)
Q Consensus 787 q~~~~~~~lTv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~a 860 (1293)
|.|..|+.+||+|||..+...... .... .+..++++++++..||.+.+|...+ .||.||||++.|++.
T Consensus 88 Q~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL~~~~~~~A~-----~LSHGqKQwLEIGMl 161 (249)
T COG4674 88 QKPTVFENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGLGDERDRLAA-----LLSHGQKQWLEIGML 161 (249)
T ss_pred cCCeehhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHcccchhhhhhhh-----hhccchhhhhhhhee
Confidence 999999999999999986532210 1112 2334578999999999999998877 599999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 861 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 861 L~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
++++|++|+||||++|+-.......-++|++++. +++|+++.||+. -+.+++|+|.+|.+ |.+...|+.+
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~-G~VL~EGsld 231 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE-GSVLAEGSLD 231 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec-cceeecccHH
Confidence 9999999999999999999999999999999975 689999999975 47788999999985 8999999875
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=353.64 Aligned_cols=210 Identities=25% Similarity=0.382 Sum_probs=176.2
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+ +++.+|+|+|+++++||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 340 ~i~~~~v~f~y~------------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYR------------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeC------------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEh
Confidence 588999988763 123599999999999999999999999999999999998764 479999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
++ ..+++.++||||++.+++. |++||+.++. ..+++ +++++++.+|+.+. .|+.++. .
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~ 473 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGE-Q 473 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccC-C
Confidence 53 4567889999999999986 9999998742 12232 25677888887643 3555654 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++.+ ++|+|+++|++ +....+|++++|++
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~--~~l~~~D~ii~l~~- 549 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRL--STIVEADTILVLHR- 549 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecch--HHHHhCCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999998864 69999999997 46678999999985
Q ss_pred cEEEEeCCCC
Q 000773 924 GQVIYSGPLG 933 (1293)
Q Consensus 924 G~~~~~g~~~ 933 (1293)
|+++..|+.+
T Consensus 550 G~i~~~G~~~ 559 (592)
T PRK10790 550 GQAVEQGTHQ 559 (592)
T ss_pred CEEEEEcCHH
Confidence 9999999863
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=302.39 Aligned_cols=174 Identities=26% Similarity=0.315 Sum_probs=146.8
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh---c-ccceEEEEccCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE---T-FARISGYCEQNDIHSP 793 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~-~~~~~~~v~q~~~~~~ 793 (1293)
+++.+|+|+||++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.... . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (200)
T cd03217 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90 (200)
T ss_pred CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc
Confidence 34569999999999999999999999999999999999742114579999999876431 1 2345999999998888
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
..|+++++. .. .+.||||||||++|||+|+.+|++++||||
T Consensus 91 ~~~~~~~l~----------------------------------~~-----~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 91 GVKNADFLR----------------------------------YV-----NEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred CccHHHHHh----------------------------------hc-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 888887650 00 126999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHH-HHhHhheeecCcEEEEeCCC
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~~~G~~~~~g~~ 932 (1293)
|+|||+.++..+.+.|++++++|+|||++||+++ .+.+ .+|++++|.+ |+++..|+.
T Consensus 132 t~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~~~ 189 (200)
T cd03217 132 DSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSGDK 189 (200)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEccH
Confidence 9999999999999999999877899999999975 3444 6999999985 899998853
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=295.75 Aligned_cols=155 Identities=30% Similarity=0.494 Sum_probs=137.9
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 796 (1293)
+.+++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++. |
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-t 91 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP--TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-S 91 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-c
Confidence 4599999999999999999999999999999999998663 47999999987532 2345679999999988774 9
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
|+||+ ||||||||++||+||+.+|++++|||||+|
T Consensus 92 v~~~l---------------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 92 IAENI---------------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred HHHHC---------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 98876 899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 877 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
||+.++..+.+.|++++++|+|||+++|+++ ..+.+|++++|.+ |+
T Consensus 127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-G~ 172 (173)
T cd03246 127 LDVEGERALNQAIAALKAAGATRIVIAHRPE--TLASADRILVLED-GR 172 (173)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEEEC-CC
Confidence 9999999999999999877999999999974 4468999999975 65
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=296.23 Aligned_cols=215 Identities=24% Similarity=0.440 Sum_probs=177.7
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
-+.++|++. .+++++||+|||++|+|||-.+|+|||||||||||++++|...++ +|.+.+.|++.
T Consensus 31 li~l~~v~v-------------~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~~~ 95 (257)
T COG1119 31 LIELKNVSV-------------RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRF 95 (257)
T ss_pred eEEecceEE-------------EECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeeeec
Confidence 466666654 456789999999999999999999999999999999999976643 78999998875
Q ss_pred Ch----hcccceEEEEccC--CCCCCCCCHHHHHHHHHH--hcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000773 774 KQ----ETFARISGYCEQN--DIHSPQVTVKESLIYSAF--LRLAK-EVSKEDKIIFVEEVMDLVELESLKDAIVGLPGV 844 (1293)
Q Consensus 774 ~~----~~~~~~~~~v~q~--~~~~~~lTv~e~l~~~~~--~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 844 (1293)
.. ...++.||+|.-. ..+.++.+|+|-+.-+.. .-... ..+ ++...++..+++.+|+.+.+|+..+
T Consensus 96 G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~-~~~~~~a~~lle~~g~~~la~r~~~---- 170 (257)
T COG1119 96 GKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT-AEDLAAAQWLLELLGAKHLADRPFG---- 170 (257)
T ss_pred cCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCC-HHHHHHHHHHHHHcchhhhccCchh----
Confidence 33 3467889999753 345567888887753322 22222 233 3445678899999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
.||-||||||-|||||+++|.+||||||++|||...++.+.+.|.+++.. +.++|++||+++ |+...|++++++++
T Consensus 171 -~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~ 248 (257)
T COG1119 171 -SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE 248 (257)
T ss_pred -hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeC
Confidence 69999999999999999999999999999999999999999999999865 789999999986 78899999999985
Q ss_pred CcEEEEeCC
Q 000773 923 GGQVIYSGP 931 (1293)
Q Consensus 923 ~G~~~~~g~ 931 (1293)
|+++++|.
T Consensus 249 -g~v~~~g~ 256 (257)
T COG1119 249 -GEVVAQGK 256 (257)
T ss_pred -Cceeeccc
Confidence 89998874
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=307.55 Aligned_cols=190 Identities=28% Similarity=0.359 Sum_probs=157.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+|++.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999876432 12356899999999999999999998865432110
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
.. +.+..++++++.+||++..++.+++ ||||||||++||+|
T Consensus 105 --------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~a 145 (220)
T cd03265 105 --------------------GA--------------ERRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARS 145 (220)
T ss_pred --------------------HH--------------HHHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHH
Confidence 00 0112356689999998877777754 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
++.+|++++|||||+|||+.++..+.+.|+++++++++|+|++.| ..+++.+.+|++++|++|+++..|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH-~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH-YMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999999997755889888754 55688889999999999999999887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=325.23 Aligned_cols=191 Identities=24% Similarity=0.319 Sum_probs=161.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999998876432 245799999999999999999999987543
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+.. ..+ .+..++++++.+||++..++.++ .|||||||||+
T Consensus 110 ~~~~--------------------~~~--------------~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~ 150 (343)
T PRK11153 110 AGTP--------------------KAE--------------IKARVTELLELVGLSDKADRYPA-----QLSGGQKQRVA 150 (343)
T ss_pred cCCC--------------------HHH--------------HHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHH
Confidence 2110 000 01235668899999887777665 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||||+.+|++++|||||+|||+.++..+++.|++++++.|+|+|+++| ..+++.++||++++|++|++++.|+.+++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH-~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH-EMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999998766889999755 456888899999999999999999988874
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=296.90 Aligned_cols=161 Identities=27% Similarity=0.510 Sum_probs=140.6
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEccCCCCCCCCCHH
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHSPQVTVK 798 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~q~~~~~~~lTv~ 798 (1293)
.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++ .|++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 92 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP--QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLR 92 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHH
Confidence 599999999999999999999999999999999998653 47999999986532 234567999999988775 6998
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 000773 799 ESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878 (1293)
Q Consensus 799 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD 878 (1293)
||+ ...||||||||++|||||+.+|++|+|||||+|||
T Consensus 93 ~~i------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD 130 (178)
T cd03247 93 NNL------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130 (178)
T ss_pred Hhh------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 876 12699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 879 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 879 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
+.++..+++.|++++ +++|||+++|+++ .+ +.+|++++|.+ |++++.|
T Consensus 131 ~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 131 PITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 999999999999985 5899999999975 34 57999999985 8887654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=318.36 Aligned_cols=224 Identities=30% Similarity=0.438 Sum_probs=184.5
Q ss_pred CccccccceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeE
Q 000773 685 GMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEG 764 (1293)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G 764 (1293)
.+.+|.+...++.+++++-. + ..++.+|+|+||++.+||.+||+||||||||||.|+|.|.-. +..|
T Consensus 325 ~m~LP~P~g~L~Ve~l~~~P---P--------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G 391 (580)
T COG4618 325 RMPLPAPQGALSVERLTAAP---P--------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSG 391 (580)
T ss_pred CCCCCCCCceeeEeeeeecC---C--------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCC
Confidence 35667677788999998732 2 134689999999999999999999999999999999999765 3579
Q ss_pred EEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHcCCccccc
Q 000773 765 DIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKI-----IFVEEVMDLVELESLKD 836 (1293)
Q Consensus 765 ~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~l~~~~~ 836 (1293)
.|.+||.+.++ +.+-+.+||.||+-.+|+. ||.||+. |...+.+.+... ..+.|++ +.+.+-.|
T Consensus 392 ~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~GYd 463 (580)
T COG4618 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQGYD 463 (580)
T ss_pred cEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcCCcc
Confidence 99999988754 3456789999999999875 9999995 333333333211 1122322 45666788
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhH
Q 000773 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 916 (1293)
Q Consensus 837 ~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 916 (1293)
+.+|.. ..+||||||||+++||||-.+|.+++||||-|+||......+.+.|.+++++|+|+|+++|+|+ +...+|+
T Consensus 464 T~iG~~-G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dk 540 (580)
T COG4618 464 TRIGEG-GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDK 540 (580)
T ss_pred CccCCC-CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcce
Confidence 999964 4689999999999999999999999999999999999999999999999999999999999985 7788999
Q ss_pred hheeecCcEEEEeCCCC
Q 000773 917 LLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 917 v~~l~~~G~~~~~g~~~ 933 (1293)
+++|. +|++..+|+.+
T Consensus 541 ilvl~-~G~~~~FG~r~ 556 (580)
T COG4618 541 ILVLQ-DGRIAAFGPRE 556 (580)
T ss_pred eeeec-CChHHhcCCHH
Confidence 99997 59999999974
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=313.62 Aligned_cols=206 Identities=23% Similarity=0.362 Sum_probs=161.6
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++++++..+.. +++.+|+++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 12 l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 79 (226)
T cd03248 12 VKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP--QGGQVLLDGKPIS 79 (226)
T ss_pred EEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCcEEEECCCchH
Confidence 6778887655210 123599999999999999999999999999999999998653 4799999998653
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCH-HH--HHHHHHHHHHHc--CCcccccccccCCCCCC
Q 000773 775 Q---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSK-ED--KIIFVEEVMDLV--ELESLKDAIVGLPGVTG 846 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~-~~--~~~~~~~~l~~l--~l~~~~~~~~~~~~~~~ 846 (1293)
. ...++.++|++|++.+++ .||+||+.+.... ..... .+ ....+++.++.+ |+.+..+..+ +.
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~ 150 (226)
T cd03248 80 QYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQ 150 (226)
T ss_pred HcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----Cc
Confidence 2 234567999999998876 5999999764321 11000 01 112245777777 6766555543 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 847 lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++ ..+|++++|.+ |+
T Consensus 151 LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 225 (226)
T cd03248 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GR 225 (226)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-Cc
Confidence 999999999999999999999999999999999999999999999865 689999999975 34 56999999975 65
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=305.37 Aligned_cols=185 Identities=28% Similarity=0.388 Sum_probs=153.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~- 103 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP- 103 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCC-
Confidence 47999999999999999999999987 999999998875422 2456899999998898999999998864321100
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.. +.++.++++++.+||.+..++.+++ ||||||||++|||||
T Consensus 104 -------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al 145 (213)
T cd03259 104 -------------------KA--------------EIRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARAL 145 (213)
T ss_pred -------------------HH--------------HHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHH
Confidence 00 0012345678899998877776654 999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
+.+|++++|||||+|||+.++..+++.|++++++.++|+|++.| ..+++.+.||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH-~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH-DQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec-CHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999987656889988755 456788899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=274.70 Aligned_cols=190 Identities=25% Similarity=0.369 Sum_probs=162.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
.++++||||||||||||+++|.++|. .|+|.+||++++.... .-|.|+|++.++|-+||.||+.|+.++++..+.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~ 107 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA 107 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCc--cceeEeccCccchhhHHHHHHHHHHHhcCCCHH
Confidence 36899999999999999999999998 9999999998875433 348999999999999999999999998875321
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
. ...++++.+...||++..+..| -+|||||||||.|||||+
T Consensus 108 ~----------------------------------R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa 148 (259)
T COG4525 108 Q----------------------------------RREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALA 148 (259)
T ss_pred H----------------------------------HHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhh
Confidence 0 1234567889999988766555 469999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecC--CeEEEEcChhhHHH
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSE--GQIVYQGPRERVLE 235 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~--G~i~~~G~~~~~~~ 235 (1293)
.+|++|+||||+++||+-+++++.++|-++.+..|+.++++ +|...|+.-+++++++|+. |+|+..-++.-...
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli-TH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI-THDIEEALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE-eccHHHHHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 99999999999999999999999999999888889999885 5677888889999999974 89998777664433
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=357.51 Aligned_cols=209 Identities=28% Similarity=0.420 Sum_probs=173.4
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|++++.+. +++.+|+|+|+++++||.+||+||||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i 543 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIPR 543 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEeH
Confidence 5899999987632 235699999999999999999999999999999999998764 479999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
++ ..+++.+|||+|++.+++ .|++||+.++. ...++++ +.++++..++.+. .|+.+++.
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~~~----i~~al~~~~l~~~i~~lp~gl~t~i~e~- 612 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPDAD----LVRACKDAAIHDVITSRPGGYDAELAEG- 612 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCHHH----HHHHHHHhCCHHHHHhCcCcccceeccC-
Confidence 43 456788999999999885 59999997531 1223332 4566777666543 35666643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|++ .++|+|+++|+++ ....+|++++|++
T Consensus 613 G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~- 686 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER- 686 (710)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 468999999999999999999999999999999999999999999976 4899999999964 5677999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 687 G~i~~~G~~ 695 (710)
T TIGR03796 687 GKVVQRGTH 695 (710)
T ss_pred CEEEEecCH
Confidence 899999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=298.68 Aligned_cols=167 Identities=30% Similarity=0.488 Sum_probs=139.9
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~ 794 (1293)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|
T Consensus 10 ~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~i~~~~q------- 80 (180)
T cd03214 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP--SSGEILLDGKDLASLSPKELARKIAYVPQ------- 80 (180)
T ss_pred CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECCcCCHHHHHHHHhHHHH-------
Confidence 345699999999999999999999999999999999998663 57999999987532 122344666666
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPt 874 (1293)
+++.+|+.+..++.+ +.||||||||++|||+|+.+|++++|||||
T Consensus 81 ------------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~ 125 (180)
T cd03214 81 ------------------------------ALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPT 125 (180)
T ss_pred ------------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 455667665555443 379999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 875 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 126 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 126 SHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999776 899999999975 56688999999985 8887643
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=348.47 Aligned_cols=194 Identities=29% Similarity=0.441 Sum_probs=160.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
.+||+|+||||||||+|+|+|+++|. +|+|.+||.++++.. .++.++||+|++.+|.. |++||+.++.....
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~- 575 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEAT- 575 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCCC-
Confidence 37999999999999999999999998 999999999987654 46889999999988866 99999988643211
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
.+ +..+++...+. .+ -..+++..+||.+| |.+.+||||||||++|||
T Consensus 576 ---~e---------------------~i~~A~~~ag~-----~~---fI~~lP~gy~t~v~-E~G~~LSGGQrQrlalAR 622 (709)
T COG2274 576 ---DE---------------------EIIEAAQLAGA-----HE---FIENLPMGYDTPVG-EGGANLSGGQRQRLALAR 622 (709)
T ss_pred ---HH---------------------HHHHHHHHhCc-----HH---HHHhcccccccccc-cCCCCCCHHHHHHHHHHH
Confidence 11 11122222111 11 12357888999999 477889999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEF 236 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~ 236 (1293)
||+++|+||+||||||+||+.+.+.+.+.|.++. .|+|+|++.|+++ ..+.||||+||++|+++++|+++|+.+.
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccch--HhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999999999999999986 4689999888874 7889999999999999999999999863
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=325.73 Aligned_cols=191 Identities=22% Similarity=0.331 Sum_probs=161.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-------QKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+++.+||+||+.++..
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999998764321 2469999999999999999999998765
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
..+... . +.+..++++++.+||.+..++.+. .|||||||||
T Consensus 133 ~~~~~~--------------------~--------------~~~~~~~e~L~~~gL~~~~~~~~~-----~LSgGq~QRv 173 (400)
T PRK10070 133 LAGINA--------------------E--------------ERREKALDALRQVGLENYAHSYPD-----ELSGGMRQRV 173 (400)
T ss_pred hcCCCH--------------------H--------------HHHHHHHHHHHHcCCChhhhcCcc-----cCCHHHHHHH
Confidence 322100 0 001235668999999887777665 4999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
+|||||+.+|+++||||||+|||+.++..+.+.|+++.++.++|+|+++| ..+++.+++|++++|++|+++..|+++++
T Consensus 174 ~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTH-d~~~~~~~~Dri~vL~~G~i~~~g~~~~l 252 (400)
T PRK10070 174 GLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH-DLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252 (400)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEEC-CHHHHHHhCCEEEEEECCEEEecCCHHHH
Confidence 99999999999999999999999999999999999987666889998755 56788899999999999999999998876
Q ss_pred H
Q 000773 234 L 234 (1293)
Q Consensus 234 ~ 234 (1293)
.
T Consensus 253 ~ 253 (400)
T PRK10070 253 L 253 (400)
T ss_pred H
Confidence 4
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=357.34 Aligned_cols=210 Identities=22% Similarity=0.393 Sum_probs=173.8
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+ +++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.++
T Consensus 473 ~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEH
Confidence 578999988753 134699999999999999999999999999999999998764 589999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 843 (1293)
++ ..+++.+|||+|++.+++. |++||+.++.. ...++++ +.++++..++.+ -.|+.++. +
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e-~ 608 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSE-E 608 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecC-C
Confidence 43 4567889999999998865 99999986421 1223322 456666666543 24666664 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|++|+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 4679999999999999999999999999999999999999999999885 4799999999974 6688999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 899999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=296.58 Aligned_cols=179 Identities=21% Similarity=0.335 Sum_probs=137.9
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCC--CCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQND--IHSPQV 795 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~--~~~~~l 795 (1293)
+.++++++++|-|.-...+||+||||.||||||++|.|...+ ..|+..-| .+-.||+..|+. .+-..-
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn--------hrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN--------HRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc--------ceeeeechhhhhHHhhcccc
Confidence 567789999999999999999999999999999999998774 35654322 233578888863 344566
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 000773 796 TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS 875 (1293)
Q Consensus 796 Tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPts 875 (1293)
|.-|.|.-.. +.+-++ +...+-.+||...++++- ++.||||||-||++|..-+..|+||||||||+
T Consensus 668 tp~EyLqr~F------Nlpyq~----ARK~LG~fGL~sHAHTik----ikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 668 TPVEYLQRKF------NLPYQE----ARKQLGTFGLASHAHTIK----IKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred CHHHHHHHhc------CCChHH----HHHHhhhhhhhhccceEe----eeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 7777664221 233333 456788999998888763 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 876 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 876 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
+||..+...+-+.|++. ...||+++||-+. +.+.-+.+.++.+.|
T Consensus 734 NLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~ 778 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQG 778 (807)
T ss_pred CcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCC
Confidence 99999999999888876 4589999998653 444445566665544
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=353.66 Aligned_cols=210 Identities=28% Similarity=0.414 Sum_probs=171.3
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+.. +++.+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 58999999876421 134699999999999999999999999999999999998764 479999999986
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
++ ..+++.++||+|++.+++ .|++||+.++. ...+++ .+.++++..++.+. .|+.+|+ +
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige-~ 614 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGE-K 614 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccC-C
Confidence 53 346778999999999886 59999997642 122222 25667777776543 4566664 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|+||+||||||+||+.++..+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~- 688 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK- 688 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999988 22 235899999999964 6678999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 689 G~ive~Gt~ 697 (711)
T TIGR00958 689 GSVVEMGTH 697 (711)
T ss_pred CEEEEeeCH
Confidence 899999985
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=308.24 Aligned_cols=195 Identities=27% Similarity=0.411 Sum_probs=158.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++........
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 47999999999999999999999887 999999998765432 23568999999998889999999988654221000
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
+. ... +....++.+++.+||++..++.+++ ||||||||++||+||
T Consensus 107 ~~----------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al 151 (239)
T cd03296 107 RP----------------PEA--------------EIRAKVHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARAL 151 (239)
T ss_pred cC----------------CHH--------------HHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHHH
Confidence 00 000 0012345678999998777776654 999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.+.+|++++|++|++++.|+++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD-QEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999977558899997665 46788899999999999999999987763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=343.47 Aligned_cols=197 Identities=18% Similarity=0.205 Sum_probs=164.3
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCC--
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIH-- 791 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~-- 791 (1293)
++++.+|+|+|+++++||+++|+||||||||||+|+|+|...+ .+|+|.++|.+... ...++.++|++|++..
T Consensus 13 ~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p--~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (490)
T PRK10938 13 LSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL--LSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDM 90 (490)
T ss_pred cCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCceEEECCcccccCCHHHHHHHhceeccCcchhh
Confidence 3445699999999999999999999999999999999998653 47999998875432 2234568999998643
Q ss_pred C------CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 792 S------PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 792 ~------~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
+ ..+||+|++.+. .+..++++++++.+|+.+..++.++ .|||||||||+||+||+.+|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 91 LSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK-----YLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred cccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCC
Confidence 1 147888876431 1122457889999999888887765 69999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 866 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|++++|.+ |+++..|+.+
T Consensus 155 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 220 (490)
T PRK10938 155 DLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD-CTLAETGERE 220 (490)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999877999999999975 57788999999985 8999988753
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=312.38 Aligned_cols=191 Identities=24% Similarity=0.347 Sum_probs=159.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-------ccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-------PQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999987 899999998775421 13468999999999989999999988654
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
..+.. .. +....++++++.+||.+..++.+++ ||||||||+
T Consensus 129 ~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv 169 (269)
T cd03294 129 VQGVP--------------------RA--------------EREERAAEALELVGLEGWEHKYPDE-----LSGGMQQRV 169 (269)
T ss_pred hcCCC--------------------HH--------------HHHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHH
Confidence 22100 00 0012345678999998877877764 999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
+||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++.|+ .+++.+.+|++++|++|++++.|+++++
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~-~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD-LDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999976568899987655 5678889999999999999999998876
Q ss_pred H
Q 000773 234 L 234 (1293)
Q Consensus 234 ~ 234 (1293)
.
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 4
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=352.81 Aligned_cols=211 Identities=26% Similarity=0.450 Sum_probs=175.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|++++.+. +++.+|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEh
Confidence 5899999987631 234699999999999999999999999999999999998764 579999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 843 (1293)
++ ..+++.++||+|++.+++. |++||+.+.. ...++++ +.++++..++.+ -.|+.+|+.
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~- 598 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGER- 598 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCC-----CCCCHHH----HHHHHHHcChHHHHHhCcccccceecCC-
Confidence 53 4567889999999998875 9999997631 1223332 456666666544 345666643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++ ..+.+|++++|++
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~- 674 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN- 674 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 45799999999999999999999999999999999999999999999886 4799999999974 6688999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 675 G~i~e~G~~ 683 (694)
T TIGR03375 675 GRIVADGPK 683 (694)
T ss_pred CEEEeeCCH
Confidence 999999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=323.28 Aligned_cols=192 Identities=30% Similarity=0.438 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc---cccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF---VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
.++|+|+||||||||+++|+|+.+|+ +|+|.+||.+..+. .++++++||+|+|.+++. |+|||+.++.....
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~~s- 423 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPDAS- 423 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCcCC-
Confidence 37999999999999999999999987 99999999887654 467899999999998876 99999998643110
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
+.++.+..+. ..+.+.+.-++..||.+|+ .+++|||||+|||++||
T Consensus 424 ---------------------~e~i~~al~~------------a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLAR 469 (559)
T COG4988 424 ---------------------DEEIIAALDQ------------AGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALAR 469 (559)
T ss_pred ---------------------HHHHHHHHHH------------hcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHH
Confidence 0111111110 0112222224567899984 77889999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
||+.+++++++||||++||.++++.+.+.|.++++ ++|+++++|++ +....+|+|++|++|++++.|.++++.+
T Consensus 470 All~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999999986 58888887775 4667899999999999999999999854
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=313.62 Aligned_cols=192 Identities=28% Similarity=0.401 Sum_probs=157.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-----cccceEEeeccccc-cCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-----VPQKTSAYISQNDV-HVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++. .+...||+|++.|+...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 47999999999999999999999988 99999999887642 22467899999863 33457999999886542
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc--cccCcccCCCcccccccccchh
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD--ICKDTIVGDEMNRGISGGQKKR 152 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqrqR 152 (1293)
.+.. .. +.+..++++++.+||+ +..|+.+. .||||||||
T Consensus 112 ~~~~--------------------~~--------------~~~~~~~~~l~~~gL~~~~~~~~~~~-----~LSgGq~qr 152 (287)
T PRK13637 112 LGLS--------------------EE--------------EIENRVKRAMNIVGLDYEDYKDKSPF-----ELSGGQKRR 152 (287)
T ss_pred CCCC--------------------HH--------------HHHHHHHHHHHHcCCCchhhccCCcc-----cCCHHHHHH
Confidence 2110 00 0112356789999997 55666654 599999999
Q ss_pred hHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhh
Q 000773 153 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRER 232 (1293)
Q Consensus 153 v~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~ 232 (1293)
++||+||+.+|++++|||||+|||+.++..+++.|++++++.|+|||+++|+ .+++.++||||++|++|++++.|++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~drv~~l~~G~i~~~g~~~~ 231 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS-MEDVAKLADRIIVMNKGKCELQGTPRE 231 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999977668999997554 567888999999999999999999988
Q ss_pred HHH
Q 000773 233 VLE 235 (1293)
Q Consensus 233 ~~~ 235 (1293)
+.+
T Consensus 232 ~~~ 234 (287)
T PRK13637 232 VFK 234 (287)
T ss_pred HHh
Confidence 743
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=317.03 Aligned_cols=191 Identities=28% Similarity=0.375 Sum_probs=159.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999876432 12467999999999999999999998654322100
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
..+ .+..++.+++.+||++..++.+++ ||||||||++||+|
T Consensus 109 --------------------~~~--------------~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 149 (303)
T TIGR01288 109 --------------------TRE--------------IEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARA 149 (303)
T ss_pred --------------------HHH--------------HHHHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHHH
Confidence 000 011245678899999888887765 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|+.+|++++|||||+|||+.++..+++.|+++++ .|+|+|++.| ..+++.++||++++|++|++++.|+++++.+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH-~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTH-FMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999976 5889998755 5568889999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=307.21 Aligned_cols=200 Identities=23% Similarity=0.315 Sum_probs=158.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc----cceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP----QKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.++.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 47999999999999999999999887 9999999988754321 3458999999999999999999988754221
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
....... ...... .+....++++++.+||++..++.++ .|||||||||+||
T Consensus 105 ~~~~~~~----------~~~~~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la 155 (236)
T cd03219 105 GSGLLLA----------RARREE--------------REARERAEELLERVGLADLADRPAG-----ELSYGQQRRLEIA 155 (236)
T ss_pred ccccccc----------cccccH--------------HHHHHHHHHHHHHcCccchhhCChh-----hCCHHHHHHHHHH
Confidence 0000000 000000 0012235678899999877777665 4999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||+.+|++++|||||+|||+.++..+++.|+++++ .++|+|++.|+ .+++.+.||++++|++|++++.|+++++.
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHD-MDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999999999999999999876 58899887554 56788899999999999999999987763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=295.75 Aligned_cols=178 Identities=19% Similarity=0.246 Sum_probs=147.7
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKE 799 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 799 (1293)
+.+++ +|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ++.++|++|++.+++.+||+|
T Consensus 14 ~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~ 89 (195)
T PRK13541 14 KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP--SSGNIYYKNCNINNIA-KPYCTYIGHNLGLKLEMTVFE 89 (195)
T ss_pred cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCcccChhh-hhhEEeccCCcCCCccCCHHH
Confidence 34555 9999999999999999999999999999998663 5899999998764322 345899999988888999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000773 800 SLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879 (1293)
Q Consensus 800 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~ 879 (1293)
|+.+..... . . .++++++++.+++.+..++.++ .||||||||++||+||+.+|++++|||||+|||+
T Consensus 90 ~l~~~~~~~---~--~---~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 90 NLKFWSEIY---N--S---AETLYAAIHYFKLHDLLDEKCY-----SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred HHHHHHHhc---c--c---HHHHHHHHHHcCCHhhhccChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 998754321 1 1 1246788899999877776544 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhH
Q 000773 880 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 916 (1293)
Q Consensus 880 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 916 (1293)
.++..+.+.|++..++|+|||+++|+++ ..+.+|-
T Consensus 157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~ 191 (195)
T PRK13541 157 ENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQI 191 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhe
Confidence 9999999999877677999999999975 3344443
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=322.39 Aligned_cols=186 Identities=25% Similarity=0.407 Sum_probs=159.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-------cccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-------VPQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.++||+|++.+++.+||+||+.|+.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 47999999999999999999999987 99999999876431 124679999999999999999999987532
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
.. .+..++++++.+||++..++.++ .|||||||||
T Consensus 103 ~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRv 137 (352)
T PRK11144 103 KS----------------------------------------MVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRV 137 (352)
T ss_pred hh----------------------------------------hHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHH
Confidence 00 01124567899999887777765 4999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|+++| ..+++..++|++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTH-d~~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSH-SLDEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEec-CHHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 99999999999999999999999999999999999998766889988755 45688999999999999999999999887
Q ss_pred HH
Q 000773 234 LE 235 (1293)
Q Consensus 234 ~~ 235 (1293)
..
T Consensus 217 ~~ 218 (352)
T PRK11144 217 WA 218 (352)
T ss_pred Hh
Confidence 53
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-33 Score=302.79 Aligned_cols=185 Identities=28% Similarity=0.376 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. .++.++|++|++.+++.+||+||+.++....+...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~- 105 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPK- 105 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCH-
Confidence 47999999999999999999999887 9999999987753 34578999999988888999999988654321100
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
. .....++.+++.+||.+..++.++ .||||||||++||+||+
T Consensus 106 -------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~ 147 (220)
T cd03293 106 -------------------A--------------EARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALA 147 (220)
T ss_pred -------------------H--------------HHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHH
Confidence 0 001234668899999877777665 49999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEec--CCeEEEEcCh
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLS--EGQIVYQGPR 230 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~--~G~i~~~G~~ 230 (1293)
.+|++++|||||+|||+.++..+++.|+++.++.++|+|++.|+ ..++.+.+|++++|+ +|++++.++.
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~-~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD-IDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC-HHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999999999999876568899987665 457888999999999 7999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=331.34 Aligned_cols=193 Identities=23% Similarity=0.446 Sum_probs=159.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc---cceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP---QKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
.||++||||+||||+.++|..++.|+ +|+|.+||.|+.+.+. ++.+|+|.|||.+|.. ||+|||.|+...-
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~-- 569 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDNA-- 569 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCCC--
Confidence 48999999999999999999999998 9999999999887654 5789999999999976 9999999986511
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
+ +.++ ..++.+. ...+. ..++++.+||.||+ .+.+||||||||++|||
T Consensus 570 -t-------------------~e~i---~~AAk~A-----Nah~F---I~~~p~gY~T~VGE-kG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 570 -T-------------------DEEI---EAAAKMA-----NAHEF---ITNFPDGYNTVVGE-KGSQLSGGQKQRIAIAR 617 (716)
T ss_pred -C-------------------HHHH---HHHHHHh-----ChHHH---HHhCccccccccCC-ccccccchHHHHHHHHH
Confidence 0 0111 1111110 11112 23588999999995 55679999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
||+.||.||||||.||+||+++...+.+.|.++.+ ++|+|++.|+. ...+.+|+|+++++|++++.|+++|+++
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL--STV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL--STVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh--hHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999999998865 58998876654 4778899999999999999999999875
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=343.87 Aligned_cols=212 Identities=29% Similarity=0.441 Sum_probs=171.2
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+. +++.+|+|+|++++|||.++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 316 ~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP--TSGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeh
Confidence 5889999886531 235699999999999999999999999999999999998763 479999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 843 (1293)
.. ..+++.++||+|++.+++. |++||+.+.. ...++++ +.++++..++.+ -.|+.++. .
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~gl~t~~~~-~ 451 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEK----IIEAAKLAGVHELILRLPDGYDTVIGP-G 451 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHH----HHHHHHHhChHHHHHhCccccccccCC-C
Confidence 43 3456789999999999876 9999997421 1123322 233444444332 22455553 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ..+.+|++++|++
T Consensus 452 g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~- 528 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD- 528 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 4679999999999999999999999999999999999999999999998766899999999974 5678999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 529 G~i~~~g~~ 537 (544)
T TIGR01842 529 GRIARFGER 537 (544)
T ss_pred CEEEeeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=305.79 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=158.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999987 999999998875421 145689999999999999999999886542
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+.. ..+ ....++++++.+||++..++.+. .||||||||++
T Consensus 110 ~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 150 (233)
T cd03258 110 AGVP--------------------KAE--------------IEERVLELLELVGLEDKADAYPA-----QLSGGQKQRVG 150 (233)
T ss_pred cCCC--------------------HHH--------------HHHHHHHHHHHCCChhhhhcChh-----hCCHHHHHHHH
Confidence 2100 000 01134567899999887777664 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||+||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.+.+|++++|++|++++.|+.+++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE-MEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999877568899997665 46788899999999999999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=289.67 Aligned_cols=202 Identities=26% Similarity=0.421 Sum_probs=170.7
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh--hcccceEEEEc-cCCCCCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCE-QNDIHSPQVT 796 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~~v~-q~~~~~~~lT 796 (1293)
..+++||||+|++|++++++|||||||||+||+|+|...+ .+|.|.++|..+-. ..+-+.+++|+ |.-.+...+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p--~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP--TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc--CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 4589999999999999999999999999999999998763 58999999986532 23334566654 5556666777
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
+.|.+....... +.+.++-.++.+++.+.+++....+..+. .||-|||.|+.||.+|+++|++|||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr-----~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVR-----KLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhh-----hccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888776543332 45666667788999999999988777654 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 877 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
||..++..|.+.|++..++ +.||+.+||+.+ ++...||||++++. |+++|+|+.+
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccHH
Confidence 9999999999999998754 999999999987 79999999999985 9999999973
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=315.75 Aligned_cols=190 Identities=25% Similarity=0.394 Sum_probs=160.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||.||+.+.+...+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999988 99999999887542 22457999999999999999999999866543210
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
. . +....++++++.+||.+..|+.++. ||||||||++||+|
T Consensus 107 ~--------------------~--------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~a 147 (301)
T TIGR03522 107 G--------------------Q--------------LLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQA 147 (301)
T ss_pred H--------------------H--------------HHHHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHHH
Confidence 0 0 0012346689999999888887764 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|+.+|++++|||||+|||+.++..+++.|+++++ ++|||++. |..+++.++|||+++|++|++++.|+.+++.+
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~s-H~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILST-HIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEc-CCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999853 68888875 55678999999999999999999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=321.32 Aligned_cols=190 Identities=27% Similarity=0.454 Sum_probs=160.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-------cccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-------VPQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.|+..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 47999999999999999999999987 99999999887432 124569999999999999999999998653
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
.... . +.+..++++++.+||.+..|+.+++ |||||||||
T Consensus 102 ~~~~-------~-----------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqRv 140 (354)
T TIGR02142 102 RARP-------S-----------------------------ERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRV 140 (354)
T ss_pred ccCh-------h-----------------------------HHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHH
Confidence 2100 0 0012346688999998888777654 999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
+|||||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|+++|+ .+++..++|++++|++|+++..|+++++
T Consensus 141 alAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~-~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 141 AIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS-LQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 999999999999999999999999999999999999987668899887554 5688889999999999999999998887
Q ss_pred HH
Q 000773 234 LE 235 (1293)
Q Consensus 234 ~~ 235 (1293)
..
T Consensus 220 ~~ 221 (354)
T TIGR02142 220 WA 221 (354)
T ss_pred hc
Confidence 43
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=306.06 Aligned_cols=199 Identities=26% Similarity=0.388 Sum_probs=158.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 47999999999999999999999887 899999998875432 245689999999889989999999875421
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.. .... .. ...... .....++++++.+||.+..++.++ .|||||||||+
T Consensus 106 ~~--~~~~---~~------~~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 154 (241)
T cd03256 106 RR--STWR---SL------FGLFPK---------------EEKQRALAALERVGLLDKAYQRAD-----QLSGGQQQRVA 154 (241)
T ss_pred cc--hhhh---hh------cccCcH---------------HHHHHHHHHHHHcCChhhhCCCcc-----cCCHHHHHHHH
Confidence 10 0000 00 000000 011235667899999877776664 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++.|+ .+++.+++|++++|++|++++.|+++++.
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~-~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 155 IARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ-VDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999999876568899987555 56788899999999999999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=298.82 Aligned_cols=198 Identities=24% Similarity=0.328 Sum_probs=156.8
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++.... ..+.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA--EEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCeEEECCEEh
Confidence 3677777765421 123699999999999999999999999999999999998663 479999999875
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
.. ...++.++|++|++.+++ .|++||+.+.. ....+ .+.+.++ + +. ....||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~---~----~~-----~~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR---V----SE-----GGLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh---c----cC-----CCCcCCHH
Confidence 32 234567999999998876 59999996421 11211 1233333 2 22 23479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeC
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g 930 (1293)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||+++ .+ ..+|++++|.+ |+++..|
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~~-g~i~~~g 205 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMDA-GEVKEYD 205 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999999985 4899999999975 34 45899999985 8888877
Q ss_pred C
Q 000773 931 P 931 (1293)
Q Consensus 931 ~ 931 (1293)
+
T Consensus 206 ~ 206 (207)
T cd03369 206 H 206 (207)
T ss_pred C
Confidence 5
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-31 Score=337.45 Aligned_cols=216 Identities=26% Similarity=0.388 Sum_probs=187.4
Q ss_pred ccccccccc-cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh----hcccceEEEEcc
Q 000773 713 QGVAEDKLR-LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----ETFARISGYCEQ 787 (1293)
Q Consensus 713 ~~~~~~~~~-iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~~v~q 787 (1293)
+.+.++++. +++++|+.|++||+.|++|+|||||||++|+|+|..+ +.+|++.++|.+... ...++.+|||||
T Consensus 570 L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ 647 (885)
T KOG0059|consen 570 LSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDITVSTDFQQVRKQLGYCPQ 647 (885)
T ss_pred eeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCccccccchhhhhhhcccCCc
Confidence 333444444 9999999999999999999999999999999999876 458999999988643 225677999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 000773 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSI 867 (1293)
Q Consensus 788 ~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~i 867 (1293)
+|.+.+.+|.||++.+.++++. .+..+..+.++.+++.+||.+.+|+.++ .+|||+|||+++|.||+.+|++
T Consensus 648 ~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 648 FDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred hhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCE
Confidence 9999999999999999998875 3445555668999999999999999876 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCCCChhHHHHHHH
Q 000773 868 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYE 944 (1293)
Q Consensus 868 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~~~~~~~~~~~~ 944 (1293)
++|||||+|+||.+++.++++++++.++|+.||.|||..+ |...+|||+.+|.+ |+...-|++ +++...|.
T Consensus 720 i~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ciGs~----q~LKsrfG 790 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCIGSP----QELKSRYG 790 (885)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEecCh----HHHHhhcC
Confidence 9999999999999999999999999988889999999864 56678999999986 899999986 44555553
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=318.90 Aligned_cols=191 Identities=24% Similarity=0.334 Sum_probs=160.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCc----ccCCcc-------ccceEEeeccccccCCCCCHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGY----RLNEFV-------PQKTSAYISQNDVHVGEMTVKETLD 69 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~----~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~ 69 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|. ++.... .++.++||+|++.+++.+||+||+.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 47999999999999999999999987 999999996 332211 1246999999999999999999999
Q ss_pred HHhhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCccccccccc
Q 000773 70 FSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQ 149 (1293)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1293)
++....+... . +.+..++++++.+||++..|+.+++ |||||
T Consensus 129 ~~~~~~g~~~--------------------~--------------~~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq 169 (382)
T TIGR03415 129 FGLEMQGMPE--------------------A--------------ERRKRVDEQLELVGLAQWADKKPGE-----LSGGM 169 (382)
T ss_pred HHHHhcCCCH--------------------H--------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHH
Confidence 8864322100 0 0112356689999998887777654 99999
Q ss_pred chhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcC
Q 000773 150 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229 (1293)
Q Consensus 150 rqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~ 229 (1293)
||||+|||||+.+|++++|||||+|||+.++.++.+.|+++.++.++|+|+++| ..+++.+++|||++|++|+++..|+
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTH-dl~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSH-DLDEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999997766899999754 5678899999999999999999999
Q ss_pred hhhHH
Q 000773 230 RERVL 234 (1293)
Q Consensus 230 ~~~~~ 234 (1293)
++++.
T Consensus 249 ~~ei~ 253 (382)
T TIGR03415 249 PEEIV 253 (382)
T ss_pred HHHHh
Confidence 98875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=303.79 Aligned_cols=189 Identities=22% Similarity=0.375 Sum_probs=156.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----PQKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 47999999999999999999999987 999999998765432 12468999999999999999999987643211
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
.. .. +....++.+++.+||++..++.++ .||||||||++||
T Consensus 105 ~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 145 (232)
T cd03218 105 LS--------------------KK--------------EREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIA 145 (232)
T ss_pred CC--------------------HH--------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHH
Confidence 00 00 001234667889999887777665 4999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
+||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|+ .+++.+.+|++++|++|++++.|+.+++
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 999999999999999999999999999999999875 57898887554 5688999999999999999999988765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=312.96 Aligned_cols=210 Identities=22% Similarity=0.332 Sum_probs=162.2
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+. .++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 19 ~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 85 (257)
T cd03288 19 EIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDI 85 (257)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEh
Confidence 4678888765421 12469999999999999999999999999999999999865 3579999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI-------VGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-------~~~~~ 843 (1293)
.. ...++.++|++|++.+++ .|++||+.... ..... .+.++++..++.+..+.. .+ ..
T Consensus 86 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~----~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~ 153 (257)
T cd03288 86 SKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDD----RLWEALEIAQLKNMVKSLPGGLDAVVT-EG 153 (257)
T ss_pred hhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHH----HHHHHHHHhCcHHHHhhcccccCcEec-cC
Confidence 43 234567999999998876 59999885310 11111 123344444443322221 11 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++|||||+.+|++|+|||||+|||+.++..+.+.++++. +++|||+++|+++ .+ ..+|++++|.+
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~-~~~dri~~l~~- 229 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TI-LDADLVLVLSR- 229 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HH-HhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999875 4899999999976 34 45999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 230 G~i~~~g~~ 238 (257)
T cd03288 230 GILVECDTP 238 (257)
T ss_pred CEEEEeCCH
Confidence 899998875
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=299.59 Aligned_cols=185 Identities=27% Similarity=0.365 Sum_probs=153.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~- 103 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP- 103 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCC-
Confidence 47899999999999999999999887 999999998875432 2356999999998888899999998864322100
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.. +.++.++++++.+||.+..++.+++ ||||||||++|||||
T Consensus 104 -------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~laral 145 (213)
T cd03301 104 -------------------KD--------------EIDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRAI 145 (213)
T ss_pred -------------------HH--------------HHHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 0112346678899998877777754 999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ ..++.+.+|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~-~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD-QVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999987568899997665 46788899999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=284.19 Aligned_cols=152 Identities=30% Similarity=0.396 Sum_probs=134.0
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKE 799 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 799 (1293)
+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|. +.++|++|++.++ ..|++|
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~ 82 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW--GSGRIGMPEG--------EDLLFLPQRPYLP-LGTLRE 82 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCC--------ceEEEECCCCccc-cccHHH
Confidence 4699999999999999999999999999999999998663 4799999873 4689999998764 679999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 000773 800 SLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879 (1293)
Q Consensus 800 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~ 879 (1293)
|+.+. . ...||||||||++|||||+.+|++++|||||+|||+
T Consensus 83 nl~~~---------------------------------~-----~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 83 QLIYP---------------------------------W-----DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred Hhhcc---------------------------------C-----CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 98642 0 136999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 880 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 880 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
.++..+.+.|+++ ++|+|++||+++ ....+|++++|+++|.
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 9999999999876 689999999975 4578999999988763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=302.26 Aligned_cols=180 Identities=23% Similarity=0.365 Sum_probs=148.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 47999999999999999999999987 999999998765321 235689999999999999999999887543
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+.. .. +.+..++++++.+||++..++.++ .|||||||||+
T Consensus 108 ~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ 148 (216)
T TIGR00960 108 IGVP--------------------PR--------------DANERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVA 148 (216)
T ss_pred cCCC--------------------HH--------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHH
Confidence 2110 00 001234667899999887777665 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQI 224 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i 224 (1293)
|||||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.| ..+++.+.||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH-~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATH-DINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-CHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999865 4789888755 45678889999999999974
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=315.82 Aligned_cols=184 Identities=28% Similarity=0.406 Sum_probs=157.6
Q ss_pred EECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHH
Q 000773 738 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKE 816 (1293)
Q Consensus 738 i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~ 816 (1293)
|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+||+||+.|....+ ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p--~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP--DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC--CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 6899999999999999998763 58999999987643 223567999999999999999999999875432 12334
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 000773 817 DKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 895 (1293)
Q Consensus 817 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~- 895 (1293)
+..++++++++.+++.+..++.+. +|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 444568899999999988887654 79999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 896 GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 896 g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
|+|||++||+++ ++...+|++++|.+ |+++..|+++
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 899999999975 67788999999985 8999998864
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=316.88 Aligned_cols=188 Identities=28% Similarity=0.348 Sum_probs=158.9
Q ss_pred EeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCcchh
Q 000773 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTRYE 82 (1293)
Q Consensus 4 ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 82 (1293)
|+|||||||||||++|+|+.+|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.|+.+..+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~---- 73 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP---- 73 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC----
Confidence 68999999999999999999988 999999998875432 2457999999999999999999999875432110
Q ss_pred hhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHhcC
Q 000773 83 LLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGP 162 (1293)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~~~ 162 (1293)
.. +.+..++++++.+||++..++.+. .|||||||||+|||||+.+
T Consensus 74 ----------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~ 118 (325)
T TIGR01187 74 ----------------RA--------------EIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFK 118 (325)
T ss_pred ----------------HH--------------HHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhC
Confidence 00 001235668899999887777664 5999999999999999999
Q ss_pred CcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 163 TKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 163 p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|++++|||||+|||+.++..+.+.|+++.++.++|+|+++| ...++..++|++++|++|+++..|+++++.
T Consensus 119 p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH-d~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 119 PKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH-DQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999998766899999755 456888999999999999999999998874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=322.80 Aligned_cols=194 Identities=23% Similarity=0.407 Sum_probs=161.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||||+|+|+++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|++.++.....
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~- 106 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR- 106 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhc-
Confidence 47999999999999999999999987 999999998876432 34679999999998889999999988642110
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
..+. .+.. +.++.+++.++.+||.+..++.+.+ ||||||||++|||
T Consensus 107 -~~~~-------------~~~~---------------~~~~~v~~~le~vgl~~~~~~~~~~-----LSgGerQRv~IAr 152 (402)
T PRK09536 107 -SRFD-------------TWTE---------------TDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLAR 152 (402)
T ss_pred -cccc-------------CCCH---------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHH
Confidence 0000 0000 0123467789999999888877754 9999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||+++|++++|||||+|||+.++.++++.|+++++ .++|+|+++ |..+++.++|||+++|++|++++.|+++++.
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivs-Hdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAI-HDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEE-CCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999986 588999875 5567899999999999999999999998864
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=299.19 Aligned_cols=183 Identities=24% Similarity=0.362 Sum_probs=151.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. ..++.++|++|++.+++.+||+||+.+.....+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~- 102 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKK- 102 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCCh-
Confidence 47999999999999999999999887 9999999987654 234578999999998999999999987654321100
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
. +.++.++++++.+||++..++.++ .||||||||++||+|++
T Consensus 103 -------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~ 144 (210)
T cd03269 103 -------------------E--------------EARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKVQFIAAVI 144 (210)
T ss_pred -------------------H--------------HHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHHHHHHHHh
Confidence 0 011234667899999877777665 49999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
.+|++++|||||+|||+.++..+.+.|+++++ +++|+|++.| ..+++.+.+|++++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH-~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTH-QMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECC-CHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 4788888755 556788899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=285.00 Aligned_cols=148 Identities=28% Similarity=0.447 Sum_probs=129.6
Q ss_pred cccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChh----cccceEEEEccCCCCCC
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE----TFARISGYCEQNDIHSP 793 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~----~~~~~~~~v~q~~~~~~ 793 (1293)
+++++++++|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|
T Consensus 11 ~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q------ 82 (163)
T cd03216 11 GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP--DSGEILVDGKEVSFASPRDARRAGIAMVYQ------ 82 (163)
T ss_pred CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEECCcCCHHHHHhcCeEEEEe------
Confidence 345699999999999999999999999999999999998763 579999999875421 12345777776
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 794 ~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
||||||||++|||||+.+|++++||||
T Consensus 83 -----------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP 109 (163)
T cd03216 83 -----------------------------------------------------LSVGERQMVEIARALARNARLLILDEP 109 (163)
T ss_pred -----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEE
Q 000773 874 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIY 928 (1293)
Q Consensus 874 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~ 928 (1293)
|+|||+.++..+.+.|++++++|.|||+++|++. ++.+.+|++++|.+ |++++
T Consensus 110 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 110 TAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 9999999999999999999877999999999964 46678999999975 88764
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=297.67 Aligned_cols=180 Identities=25% Similarity=0.378 Sum_probs=150.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-cccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-- 102 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-- 102 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--
Confidence 47999999999999999999999887 99999999876532 2245689999999889999999999876432110
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.+..++.+++.+||.+..++.+++ |||||||||+||+|+
T Consensus 103 ------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~al 141 (208)
T cd03268 103 ------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALAL 141 (208)
T ss_pred ------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHHH
Confidence 011245578889998777776654 999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
+.+|++++|||||+|||+.++..+.+.|+++++ +++|+|++.| ..+++.+.+|++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH-~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSH-LLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcC-CHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999876 5889888755 456788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=304.13 Aligned_cols=191 Identities=27% Similarity=0.379 Sum_probs=157.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 899999998765422 245689999999999999999999876432210
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCcc--ccCcccCCCcccccccccchhhHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDI--CKDTIVGDEMNRGISGGQKKRVTT 155 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqrqRv~i 155 (1293)
. .. +....+.++++.+||++ ..++.+ ..|||||||||+|
T Consensus 106 ~--------------------~~--------------~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~l 146 (242)
T cd03295 106 P--------------------KE--------------KIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGV 146 (242)
T ss_pred C--------------------HH--------------HHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHH
Confidence 0 00 00123456789999985 555555 4599999999999
Q ss_pred HHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 156 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 156 a~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|++ +++.+.+|++++|++|++++.|+++++.
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999765588999876654 5788899999999999999999887763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=301.38 Aligned_cols=180 Identities=25% Similarity=0.371 Sum_probs=148.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-------ccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-------PQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 47999999999999999999999987 999999998875432 13568999999999999999999998754
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
..+... . +.+..++++++.+||++..++.++ .||||||||+
T Consensus 109 ~~~~~~--------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 149 (218)
T cd03255 109 LAGVPK--------------------K--------------ERRERAEELLERVGLGDRLNHYPS-----ELSGGQQQRV 149 (218)
T ss_pred hcCCCH--------------------H--------------HHHHHHHHHHHHcCCchhhhcChh-----hcCHHHHHHH
Confidence 321100 0 001234667899999877777665 4999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQI 224 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i 224 (1293)
+|||||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|++ +++. .||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999765588999986665 4555 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=340.41 Aligned_cols=210 Identities=26% Similarity=0.397 Sum_probs=172.8
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+. ++.+|+|+|++++|||+++|+|+||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEh
Confidence 5889999887631 23599999999999999999999999999999999998764 589999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
.+ ..+++.++|++|++.+++ .|++||+.++. .+.++++ +.++++..++.+. .|+.++. +
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~ 468 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR-----PDATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-R 468 (588)
T ss_pred hhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC-----CCCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-C
Confidence 53 456778999999999886 59999997641 1223332 4556666665442 3555554 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
.+.||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|++||++ +..+.+|++++|++
T Consensus 469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~--~~~~~~D~ii~l~~- 544 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRL--STVRNADRILVFDN- 544 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecH--HHHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999875 479999999996 46788999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 545 G~i~~~g~~ 553 (588)
T PRK13657 545 GRVVESGSF 553 (588)
T ss_pred CEEEEeCCH
Confidence 899998885
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=297.16 Aligned_cols=177 Identities=23% Similarity=0.385 Sum_probs=140.3
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKES 800 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 800 (1293)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++|++|++.++ ..|++||
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g----------~i~~~~q~~~l~-~~t~~en 85 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG----------SIAYVSQEPWIQ-NGTIREN 85 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----------EEEEEecCchhc-cCcHHHH
Confidence 69999999999999999999999999999999999866 3579999998 489999999887 5699999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 000773 801 LIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA-------IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEP 873 (1293)
Q Consensus 801 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEP 873 (1293)
+.+... ...+ ...+.++.+++.+..+. ... .....||+|||||++|||+|+.+|++++||||
T Consensus 86 l~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 86 ILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 976321 1111 12334444444322211 111 12457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 874 TSGLDARAAAIVMR-TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 874 tsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
|+|||+.++..+.+ +++++.++|+|||+++|+++ .+. .+|++++|.+ |
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~-~~d~i~~l~~-G 203 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLP-HADQIVVLDN-G 203 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHh-hCCEEEEEeC-C
Confidence 99999999999988 56766666899999999975 344 4999999975 5
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=308.25 Aligned_cols=192 Identities=22% Similarity=0.356 Sum_probs=158.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||.||+.++...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999987 999999998775321 235689999999999999999999876431
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
... . +..+ .+..++.+++.+||.+..++.+++ ||||||||++
T Consensus 112 ~~~---~----------------~~~~--------------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~ 153 (269)
T PRK11831 112 HTQ---L----------------PAPL--------------LHSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRAA 153 (269)
T ss_pred ccC---C----------------CHHH--------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHH
Confidence 100 0 0000 012245678899998877777754 9999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++.| ..+++.+.+|++++|++|++++.|+++++.
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH-~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH-DVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEec-CHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999987655889998755 456788899999999999999999988764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=310.49 Aligned_cols=190 Identities=22% Similarity=0.319 Sum_probs=156.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-------VPQKTSAYISQND--VHVGEMTVKETLDFS 71 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~lTV~e~l~f~ 71 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|+++... ..++.++||+|++ .++ ..||+||+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~ 110 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFG 110 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHH
Confidence 47999999999999999999999987 99999999987421 1235689999986 344 56999999987
Q ss_pred hhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccc
Q 000773 72 ARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQK 150 (1293)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1293)
....+.. .. +.++.++++++.+||. +..++.+. .||||||
T Consensus 111 ~~~~~~~--------------------~~--------------~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~ 151 (290)
T PRK13634 111 PMNFGVS--------------------EE--------------DAKQKAREMIELVGLPEELLARSPF-----ELSGGQM 151 (290)
T ss_pred HHHcCCC--------------------HH--------------HHHHHHHHHHHHCCCChhhhhCCcc-----cCCHHHH
Confidence 5422110 00 0112356789999997 55676664 4999999
Q ss_pred hhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcCh
Q 000773 151 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 151 qRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~ 230 (1293)
|||+|||||+.+|++++|||||+|||+.++..+++.|++++++.|.|||+++| ..+++.+.+|||++|++|++++.|++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitH-d~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTH-SMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999997766889999755 55688899999999999999999998
Q ss_pred hhHH
Q 000773 231 ERVL 234 (1293)
Q Consensus 231 ~~~~ 234 (1293)
+++.
T Consensus 231 ~~~~ 234 (290)
T PRK13634 231 REIF 234 (290)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=311.25 Aligned_cols=202 Identities=24% Similarity=0.371 Sum_probs=160.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-------VPQKTSAYISQND--VHVGEMTVKETLDFS 71 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~lTV~e~l~f~ 71 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+++.. ..++.++||+|++ .+++ .||.|++.|+
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~ 109 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFG 109 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhH
Confidence 47999999999999999999999988 99999999987421 1245789999986 4554 6999999987
Q ss_pred hhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccc
Q 000773 72 ARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQK 150 (1293)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1293)
....+.. .. +.+..+.++++.+||. +..++.+ +.||||||
T Consensus 110 ~~~~~~~--------------------~~--------------~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGqk 150 (288)
T PRK13643 110 PQNFGIP--------------------KE--------------KAEKIAAEKLEMVGLADEFWEKSP-----FELSGGQM 150 (288)
T ss_pred HHHcCCC--------------------HH--------------HHHHHHHHHHHHcCCChhhccCCc-----ccCCHHHH
Confidence 6432110 00 0112356678899996 4556555 45999999
Q ss_pred hhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcCh
Q 000773 151 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 151 qRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~ 230 (1293)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+ .+++.++||||++|++|++++.|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd-~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHL-MDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999875 58899997554 5678889999999999999999999
Q ss_pred hhHHH---HHHhCCCCCCCC
Q 000773 231 ERVLE---FFESCGFCCPER 247 (1293)
Q Consensus 231 ~~~~~---~f~~~G~~~~~~ 247 (1293)
+++.+ .+...|+.+|..
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHHcCHHHHHHcCCCCChH
Confidence 88743 234456655543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=305.79 Aligned_cols=198 Identities=24% Similarity=0.341 Sum_probs=156.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 47999999999999999999999887 999999998765321 245689999999899999999999875321
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.. .... .. . ...+. +.+..++++++.+||.+..++.+. .|||||||||+
T Consensus 107 ~~--~~~~---~~---~---~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ 155 (243)
T TIGR02315 107 YK--PTWR---SL---L---GRFSE---------------EDKERALSALERVGLADKAYQRAD-----QLSGGQQQRVA 155 (243)
T ss_pred cc--cchh---hh---h---ccccH---------------HHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHH
Confidence 00 0000 00 0 00000 012235667899999877776664 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
|||||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|+++|+ .+++.++||++++|++|++++.|+++++
T Consensus 156 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~-~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 156 IARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-VDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999999876568898887555 5678889999999999999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=300.41 Aligned_cols=188 Identities=23% Similarity=0.400 Sum_probs=153.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----PQKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++.....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 47999999999999999999999987 999999998775432 13468999999999999999999988653211
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHh-CCccccCcccCCCcccccccccchhhHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKIL-GLDICKDTIVGDEMNRGISGGQKKRVTT 155 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1293)
. .. .+..++.+++.+ ++++..++.++ .||||||||++|
T Consensus 105 ~-------~~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv~l 143 (222)
T cd03224 105 R-------AK-----------------------------RKARLERVYELFPRLKERRKQLAG-----TLSGGEQQMLAI 143 (222)
T ss_pred c-------hh-----------------------------HHHHHHHHHHHHHhhhhhhhCchh-----hCCHHHHHHHHH
Confidence 0 00 011123456666 46666666654 499999999999
Q ss_pred HHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 156 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 156 a~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||||+.+|++++|||||+|||+.++..+++.|+++++ .++|+|++.|+ ..++.+.+|++++|++|++++.|+.+++.
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQN-ARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999999999999876 57899987554 56788999999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-32 Score=276.28 Aligned_cols=193 Identities=30% Similarity=0.446 Sum_probs=158.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcccc---ceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~---~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
|++|+||||||||||||+|+|.+.|+ +|++.+||.+++..... +..+..||+..+-...||+|.+.+|..-...
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 57999999999999999999999988 99999999998765432 4568999998877777999999998653321
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
+. .++ +..++.++.|...++.+.+.+.+ ..|||||||||.+||
T Consensus 106 g~-----------------~~~---------------e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlAR 148 (259)
T COG4559 106 GR-----------------EPE---------------EDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLAR 148 (259)
T ss_pred CC-----------------Cch---------------hhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHH
Confidence 11 010 12234566788888877766655 459999999999999
Q ss_pred HHhc------CCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChh
Q 000773 158 MIVG------PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231 (1293)
Q Consensus 158 al~~------~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~ 231 (1293)
.|++ ++++|+||||||+||...+..+++..++++++ |..|+++ .|+.+.+..+||||++|++||++..|+++
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~V-LHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAV-LHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEE-EccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 9986 34589999999999999999999999999985 5677775 56778899999999999999999999999
Q ss_pred hHHH
Q 000773 232 RVLE 235 (1293)
Q Consensus 232 ~~~~ 235 (1293)
+++.
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 8763
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-32 Score=301.10 Aligned_cols=186 Identities=19% Similarity=0.277 Sum_probs=152.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-------QKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999887 9999999988754321 2468999999988999999999988653
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
..+.. .. +.+..++++++.+||++..++.++ .||||||||+
T Consensus 114 ~~~~~--------------------~~--------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrl 154 (233)
T PRK11629 114 IGKKK--------------------PA--------------EINSRALEMLAAVGLEHRANHRPS-----ELSGGERQRV 154 (233)
T ss_pred hcCCC--------------------HH--------------HHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHH
Confidence 21100 00 001234667899999877776664 4999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcCh
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~ 230 (1293)
+||+|++.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++.|++ +++.. +|++++|++|++++.|+.
T Consensus 155 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 155 AIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999998765688999986664 45554 689999999999988764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-32 Score=347.78 Aligned_cols=211 Identities=28% Similarity=0.444 Sum_probs=173.6
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+. +++.+|+|+|++++|||.+||+|+||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 455 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~i 521 (694)
T TIGR01846 455 AITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVDL 521 (694)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEeh
Confidence 5889999887531 234699999999999999999999999999999999998763 479999999986
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
++ ..+++.++||+|++.+++ .|++||+.+.. ...+.++ +.++++..++.+. .|+.++..
T Consensus 522 ~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~~~----i~~a~~~~~l~~~i~~lp~gl~t~i~~~- 590 (694)
T TIGR01846 522 AIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPFEH----VIHAAKLAGAHDFISELPQGYNTEVGEK- 590 (694)
T ss_pred hhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCHHH----HHHHHHHcChHHHHHhCcCccCcEecCC-
Confidence 53 356778999999998886 59999997531 1223332 4455666665432 45666643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++ ....+|++++|++
T Consensus 591 g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~- 666 (694)
T TIGR01846 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK- 666 (694)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC-
Confidence 46899999999999999999999999999999999999999999999985 5899999999974 5567999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 667 G~i~~~g~~ 675 (694)
T TIGR01846 667 GQIAESGRH 675 (694)
T ss_pred CEEEEeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-32 Score=287.76 Aligned_cols=151 Identities=32% Similarity=0.544 Sum_probs=133.5
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCH
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
.+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~ 92 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP--TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTI 92 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chH
Confidence 699999999999999999999999999999999998663 47999999987532 234567999999987765 588
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 000773 798 KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877 (1293)
Q Consensus 798 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgL 877 (1293)
.||+ ||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~e~l---------------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gL 127 (171)
T cd03228 93 RENI---------------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSAL 127 (171)
T ss_pred HHHh---------------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCC
Confidence 8775 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 878 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 878 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
|+.++..+.+.|+++.+ ++|||++||+++ ++.. +|++++|.+
T Consensus 128 D~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~ 169 (171)
T cd03228 128 DPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDD 169 (171)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcC
Confidence 99999999999999864 799999999975 4544 999999975
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-32 Score=298.89 Aligned_cols=200 Identities=23% Similarity=0.264 Sum_probs=156.3
Q ss_pred cccceeeeee-----cCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 000773 722 LLNEVTSAFR-----PGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 722 iL~~vs~~i~-----~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 796 (1293)
.+++++++++ +||+++|+||||||||||+++|+|...+ .+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p--~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP--DEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5566666664 7999999999999999999999998663 4799999874 4899999988778899
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876 (1293)
Q Consensus 797 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsg 876 (1293)
|+|++.+...... .. ...++++++.+++.+..++.++ .|||||||||+||+||+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~~---~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----TH---PYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----cc---HHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999875432110 11 1235688999999887777655 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHHHhHhheeecCcEEE--EeCCCCCChhHHHHHHHhC
Q 000773 877 LDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI--YSGPLGRNSHKVIEYYEAI 946 (1293)
Q Consensus 877 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~--~~g~~~~~~~~~~~~~~~~ 946 (1293)
||+.++..+.+.|++++++ |+|||+++|+++ .+...+|++++|.+ +..+ ..+++....+.+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 9999999999999998764 899999999964 46667999999963 3323 2333332223445555544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-32 Score=296.91 Aligned_cols=177 Identities=25% Similarity=0.340 Sum_probs=146.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccc-cCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDV-HVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||+||+.++......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~-- 102 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDA-- 102 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcCc--
Confidence 47999999999999999999999987 9999999988754334457999999974 34467999999875431100
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.+..++++++.+||.+..++.++ .||||||||++|||||
T Consensus 103 ------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral 141 (205)
T cd03226 103 ------------------------------------GNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAAL 141 (205)
T ss_pred ------------------------------------cHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHH
Confidence 01124567899999887777765 4999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEE
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV 225 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~ 225 (1293)
+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|+ .+++.+.+|++++|++|+++
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~-~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHD-YEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999875 48899987655 46788899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=342.88 Aligned_cols=212 Identities=23% Similarity=0.377 Sum_probs=174.6
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|++++.+. .++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 330 ~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEeH
Confidence 5889999887531 124699999999999999999999999999999999998764 479999999875
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
++ ..+++.++|++|++.+++. |++||+.++. +++.+++ +++++++.+|+.+. .|+.++..
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~- 466 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFND-TIANNIAYGR----TEQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGEN- 466 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccc-cHHHHHhcCC----CCCCCHH----HHHHHHHHcChHHHHHhCcCcccceecCC-
Confidence 43 4466789999999988755 9999997641 1123332 25677777777543 35556643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
.+.||||||||++||||++++|++++||||||+||+.+++.+++.|++++ +++|+|++||++ +....+|++++|++
T Consensus 467 g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~- 542 (571)
T TIGR02203 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDD- 542 (571)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeC-
Confidence 45799999999999999999999999999999999999999999999875 479999999996 46788999999975
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 543 g~i~~~g~~ 551 (571)
T TIGR02203 543 GRIVERGTH 551 (571)
T ss_pred CEEEeeCCH
Confidence 899988885
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=313.64 Aligned_cols=193 Identities=21% Similarity=0.239 Sum_probs=158.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeecccc--ccCCCCCHHHHHHHHh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQND--VHVGEMTVKETLDFSA 72 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1293)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.+.. .++.++||+|++ .+++.+||.|++.+..
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999987 999999999876432 235799999997 5888999999998865
Q ss_pred hccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccch
Q 000773 73 RCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQKK 151 (1293)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1293)
...... .+.. +.++.++++++.+||. +..++.. ..|||||||
T Consensus 126 ~~~~~~------------------~~~~--------------~~~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~Q 168 (331)
T PRK15079 126 RTYHPK------------------LSRQ--------------EVKDRVKAMMLKVGLLPNLINRYP-----HEFSGGQCQ 168 (331)
T ss_pred HHhccC------------------CCHH--------------HHHHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHH
Confidence 421100 0000 0122356678999994 3455544 569999999
Q ss_pred hhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChh
Q 000773 152 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231 (1293)
Q Consensus 152 Rv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~ 231 (1293)
||+|||||+.+|+++++||||+|||+.++.++++.|+++.++.+.|+|++ +|+...+.+++|||++|++|++++.|+.+
T Consensus 169 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~i-THdl~~~~~~~dri~vl~~G~ive~g~~~ 247 (331)
T PRK15079 169 RIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFI-AHDLAVVKHISDRVLVMYLGHAVELGTYD 247 (331)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999987668899886 55667888899999999999999999998
Q ss_pred hHH
Q 000773 232 RVL 234 (1293)
Q Consensus 232 ~~~ 234 (1293)
++.
T Consensus 248 ~i~ 250 (331)
T PRK15079 248 EVY 250 (331)
T ss_pred HHH
Confidence 875
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=296.94 Aligned_cols=187 Identities=25% Similarity=0.354 Sum_probs=147.5
Q ss_pred cccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCCh-------hcccceEEEEccCCCCC
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ-------ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 720 ~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~~v~q~~~~~ 792 (1293)
+.+++|+||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 5699999999999999999999999999999999998653 47999999986532 12345799999999877
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA-------IVGLPGVTGLSIEQRKRLTIAVELVANP 865 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~~~~lSgGerqrv~ia~aL~~~p 865 (1293)
..|++||+.+... ...+ ...++++.+++.+..+. ..+. .+..||||||||++||++|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999976421 1111 12455666666443221 1111 24579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeec
Q 000773 866 SIIFMDEPTSGLDARAAAIVMR--TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 866 ~illlDEPtsgLD~~~~~~i~~--~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
++|+|||||+|||+.++..+++ +++.+.++|.|+|++||+++ .+ ..+|++++|.+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~ 216 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD 216 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC
Confidence 9999999999999999999998 67766666899999999975 34 57999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=296.93 Aligned_cols=183 Identities=27% Similarity=0.426 Sum_probs=151.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc--ccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV--PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999999987 999999998765422 2456899999999999999999998765422100
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
..+ .++.++.+++.+||++..++.+++ ||||||||++||||
T Consensus 104 --------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 144 (211)
T cd03264 104 --------------------SKE--------------VKARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQA 144 (211)
T ss_pred --------------------HHH--------------HHHHHHHHHHHCCCHHHHhCchhh-----CCHHHHHHHHHHHH
Confidence 000 012346678899998777777654 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++. |...++.+.+||+++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vs-H~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILST-HIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEc-CCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 47888865 5556788899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=296.83 Aligned_cols=185 Identities=23% Similarity=0.363 Sum_probs=152.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++......
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-- 100 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK-- 100 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC--
Confidence 47999999999999999999999987 999999998875432 245689999999999999999999875321100
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
. .. ..+..++++++.+||.+..++.+. .||||||||++||||+
T Consensus 101 -~---~~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~al 143 (211)
T cd03298 101 -L---TA----------------------------EDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALARVL 143 (211)
T ss_pred -c---cH----------------------------HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHH
Confidence 0 00 001234667899999877777665 4999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
+.+|++++|||||+|||+.++..+.+.|+++++++++|+|++.| ...++.+.+|++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH-~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH-QPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec-CHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999997666889998755 556788899999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=337.94 Aligned_cols=187 Identities=25% Similarity=0.407 Sum_probs=155.4
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+. ++.+|+|+|+++++||++||+||||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 334 ~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~~i 399 (529)
T TIGR02868 334 TLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGVSV 399 (529)
T ss_pred eEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEh
Confidence 5899999987631 23599999999999999999999999999999999998764 589999999876
Q ss_pred Ch--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCC
Q 000773 774 KQ--ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPGV 844 (1293)
Q Consensus 774 ~~--~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~~ 844 (1293)
++ ..+++.++||||++.+++. |++||+.++. ...++++ ++++++..++.+ -.|+.+|+. .
T Consensus 400 ~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~-----~~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~-G 468 (529)
T TIGR02868 400 SSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR-----PDATDEE----LWAALERVGLADWLRSLPDGLDTVLGEG-G 468 (529)
T ss_pred hhHHHHHHhheEEEccCcccccc-cHHHHHhccC-----CCCCHHH----HHHHHHHcCCHHHHHhCcccccchhccc-c
Confidence 53 4466789999999999865 9999998741 1223332 567777777654 346777753 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 906 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 906 (1293)
.+||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|++
T Consensus 469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 5799999999999999999999999999999999999999999999864 579999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-32 Score=300.23 Aligned_cols=191 Identities=23% Similarity=0.338 Sum_probs=156.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc--ccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV--PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~--~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... ..+.++|++|++.+++.+|++||+.+.....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 105 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence 47999999999999999999999987 999999998765322 1246899999998888999999998754322100
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
.. +....++++++.+||++..++.+++ ||||||||++||||
T Consensus 106 --------------------~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~lara 146 (236)
T TIGR03864 106 --------------------RA--------------EARERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIARA 146 (236)
T ss_pred --------------------HH--------------HHHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHH
Confidence 00 0011345678899998877777654 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|+.+|++++|||||+|||+.++..+.+.|+++++++++|+|++.|++ +++. .+|++++|++|++++.|+++++.+
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999999999999999999999999998765688999876655 4555 599999999999999999877654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=299.35 Aligned_cols=184 Identities=29% Similarity=0.429 Sum_probs=152.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999887532 22457999999999999899999998754322100
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
.. +....++++++.+||.+..++.+++ ||||||||++||||
T Consensus 110 --------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 150 (218)
T cd03266 110 --------------------GD--------------ELTARLEELADRLGMEELLDRRVGG-----FSTGMRQKVAIARA 150 (218)
T ss_pred --------------------HH--------------HHHHHHHHHHHHcCCHHHHhhhhhh-----cCHHHHHHHHHHHH
Confidence 00 0112356688999998877776654 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
++.+|++++|||||+|||+.++..+.+.|+++++ .++|+|+++|+ .+++.+.+|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~-~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999865 58899987655 46788899999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=300.17 Aligned_cols=190 Identities=26% Similarity=0.340 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+.++...... .
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~-~- 85 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLP-D- 85 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhccc-C-
Confidence 47999999999999999999999987 9999999988754322 248999999999999999999876321000 0
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
. ... +.+..++++++.+||++..++.+++ ||||||||++||++|+
T Consensus 86 ~----------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~ 130 (230)
T TIGR01184 86 L----------------SKS--------------ERRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALS 130 (230)
T ss_pred C----------------CHH--------------HHHHHHHHHHHHcCCHHHHcCChhh-----CCHHHHHHHHHHHHHH
Confidence 0 000 0012345678999998877777654 9999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.+.+|++++|++|++++.|+..++
T Consensus 131 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 131 IRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD-VDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999999999999999999999999877668899987555 5678889999999999999988865543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=299.25 Aligned_cols=188 Identities=28% Similarity=0.439 Sum_probs=155.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999987 99999999886532 22456899999998888999999998865432110
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
.. +.+..++++++.+||.+..++.+++ ||||||||++||||
T Consensus 107 --------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 147 (220)
T cd03263 107 --------------------KS--------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIA 147 (220)
T ss_pred --------------------HH--------------HHHHHHHHHHHHcCCHHHHhChhhh-----CCHHHHHHHHHHHH
Confidence 00 0012245678899998877777654 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
++.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|+ .+++.+.+|++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~-~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHS-MDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCC-HHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999864 4888887555 5678889999999999999999987764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.5e-33 Score=306.22 Aligned_cols=217 Identities=25% Similarity=0.375 Sum_probs=177.1
Q ss_pred cceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcC
Q 000773 691 TPLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 770 (1293)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g 770 (1293)
....++|+|+++..+ .++++|+||||++.||+.+||+|||||||||++++|.+..+ ..+|.|.+||
T Consensus 534 ~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iDg 599 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDG 599 (790)
T ss_pred cCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEcC
Confidence 345789999998764 35789999999999999999999999999999999998654 3479999999
Q ss_pred ccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH--HHHH-HHcCCcccccccccCCCC
Q 000773 771 FPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFV--EEVM-DLVELESLKDAIVGLPGV 844 (1293)
Q Consensus 771 ~~~~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~l-~~l~l~~~~~~~~~~~~~ 844 (1293)
++++. ...++.||.||||..++.+ |+..|+.|+. . ..+.++..+.+ ..+- +.++..+-.++.+|..+.
T Consensus 600 qdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak---~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 600 QDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK---P--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL 673 (790)
T ss_pred chHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC---C--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc
Confidence 98754 4577889999999988754 8889988742 1 22333322211 1121 246777778888886544
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCc
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G 924 (1293)
.|||||||||+|||+++++|.+++|||.||.||..+.++|+..|.++++ ++|-|++.|+.+ ..-.+|.++++++ |
T Consensus 674 -kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLS--TivnAD~ILvi~~-G 748 (790)
T KOG0056|consen 674 -KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLS--TIVNADLILVISN-G 748 (790)
T ss_pred -ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeeh--heecccEEEEEeC-C
Confidence 5999999999999999999999999999999999999999999999975 799999999976 4456899999985 9
Q ss_pred EEEEeCCC
Q 000773 925 QVIYSGPL 932 (1293)
Q Consensus 925 ~~~~~g~~ 932 (1293)
+|++.|..
T Consensus 749 ~IvErG~H 756 (790)
T KOG0056|consen 749 RIVERGRH 756 (790)
T ss_pred eEeecCcH
Confidence 99999875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-32 Score=297.55 Aligned_cols=188 Identities=35% Similarity=0.542 Sum_probs=153.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC---CCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN---RDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~---~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+++|+|.++ |+ +|+|.++|.++.....++.++|++|++.+++.+||+||+.++......
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~ 111 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP 111 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcc
Confidence 479999999999999999999998 66 999999998875444466799999999999999999999987543211
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHH-HHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY-TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
.... ... .....+. .++.+++++..++.++ .||||||||++||
T Consensus 112 ~~~~---~~~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 155 (226)
T cd03234 112 RKSS---DAI----------------------------RKKRVEDVLLRDLALTRIGGNLVK-----GISGGERRRVSIA 155 (226)
T ss_pred cccc---hHH----------------------------HHHHHHHHHHHhhcchhhhccccc-----CcCHHHHHHHHHH
Confidence 0000 000 0011233 6888888776666665 4999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
|+|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|+++|++..++.+.+|++++|++|++++.|
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999875 48899998777656899999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=301.06 Aligned_cols=189 Identities=22% Similarity=0.333 Sum_probs=152.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCC-----CCCCceeEEEEECCcccCCcc-----ccceEEeeccccccCCCCCHHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKL-----NRDLKVRGEITYNGYRLNEFV-----PQKTSAYISQNDVHVGEMTVKETLDF 70 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~-----~~~~~~~G~v~~~g~~~~~~~-----~~~~~~yv~Q~~~~~~~lTV~e~l~f 70 (1293)
+++|+||||||||||+++|+|.+ +|+ +|+|.++|.++.... .++.++|++|++.++ .+||+||+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~ 103 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY 103 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence 47999999999999999999999 776 899999998765322 245689999998887 7899999988
Q ss_pred HhhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccc
Q 000773 71 SARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQK 150 (1293)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1293)
+....+... .. +.++.++++++.+||.+..++.+. +.+||||||
T Consensus 104 ~~~~~~~~~-------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~ 147 (227)
T cd03260 104 GLRLHGIKL-------------------KE--------------ELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQ 147 (227)
T ss_pred HHHhcCCCc-------------------HH--------------HHHHHHHHHHHHcCCChHHhccCC---cccCCHHHH
Confidence 654221000 00 001234567889999876665530 245999999
Q ss_pred hhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcCh
Q 000773 151 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 151 qRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~ 230 (1293)
||++||+||+.+|++++|||||+|||+.++..+++.|+++++ . +|+|++.|+ .+++.+.||++++|++|++++.|++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~-~~~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHN-MQQAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEecc-HHHHHHhCCEEEEEeCCEEEEecCc
Confidence 999999999999999999999999999999999999999875 3 788887554 5678889999999999999999987
Q ss_pred hh
Q 000773 231 ER 232 (1293)
Q Consensus 231 ~~ 232 (1293)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-32 Score=306.78 Aligned_cols=190 Identities=22% Similarity=0.324 Sum_probs=157.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccc-cCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDV-HVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++. .++..||+||+.|+....+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 47999999999999999999999987 999999998875422 2356899999973 6777899999988654221
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
.. .. +.++.++++++.+||++..++.++ .||||||||++||
T Consensus 112 ~~--------------------~~--------------~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv~lA 152 (279)
T PRK13650 112 IP--------------------HE--------------EMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRVAIA 152 (279)
T ss_pred CC--------------------HH--------------HHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHH
Confidence 10 00 011235668999999887777665 4999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||+.+|++++|||||+|||+.++..+++.|++++++.|+|+|+++|+. +++ ..+|++++|++|+++..|+++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999876689999986664 456 579999999999999999988764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-32 Score=305.93 Aligned_cols=189 Identities=24% Similarity=0.326 Sum_probs=155.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccc-cCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDV-HVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++..||+||+.|+....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 47999999999999999999999987 999999998875432 2356899999863 4456799999988643211
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
.. .. +.+..++.+++.+||.+..++.+.+ |||||||||+||
T Consensus 110 ~~--------------------~~--------------~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgG~~qrv~la 150 (274)
T PRK13647 110 LD--------------------KD--------------EVERRVEEALKAVRMWDFRDKPPYH-----LSYGQKKRVAIA 150 (274)
T ss_pred CC--------------------HH--------------HHHHHHHHHHHHCCCHHHhcCChhh-----CCHHHHHHHHHH
Confidence 00 00 0112356678999998877777754 999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
|||+.+|++++|||||+|||+.++..+++.|+++++ .|+|+|+++| ..+++.+.|||+++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH-~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATH-DVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999999976 4889998755 45678889999999999999999998654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.5e-32 Score=336.55 Aligned_cols=211 Identities=23% Similarity=0.388 Sum_probs=171.4
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+. +++.+|+|+|+++++||.++|+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p--~~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV--SEGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC--CCCEEEECCEEH
Confidence 4788888776531 234699999999999999999999999999999999998763 579999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 843 (1293)
.. ..+++.++|++|++.+++. |++||+.++. ...++++ ++++++..++.+ -.|+.+|. +
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~-~ 448 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR-----PDATQQE----IEHVARLASVHDDILRLPQGYDTEVGE-R 448 (569)
T ss_pred hhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC-----CCCCHHH----HHHHHHHcCCHHHHHhCcCcccceecC-C
Confidence 43 3456789999999998875 9999997631 1223322 345566655543 23555554 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|++++|||||++||+.++..+.+.|+++. +|+|+|+++|+++ ....+|++++|++
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~- 524 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQH- 524 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeC-
Confidence 45799999999999999999999999999999999999999999999875 5899999999974 5677999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 525 G~i~~~g~~ 533 (569)
T PRK10789 525 GHIAQRGNH 533 (569)
T ss_pred CEEEEecCH
Confidence 899999985
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-32 Score=295.33 Aligned_cols=183 Identities=27% Similarity=0.409 Sum_probs=151.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-------cccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-------VPQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence 47999999999999999999999987 99999999876421 124568999999999989999999987642
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
... . .. .+..++++++.+||++..++.++ .||||||||+
T Consensus 102 ~~~-----~------~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 140 (214)
T cd03297 102 RKR-----N------RE-------------------------DRISVDELLDLLGLDHLLNRYPA-----QLSGGEKQRV 140 (214)
T ss_pred hCC-----H------HH-------------------------HHHHHHHHHHHcCCHhHhhcCcc-----cCCHHHHHHH
Confidence 110 0 00 01124567889999876666664 4999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
+||+|++.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.+.+|++++|++|++++.|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD-LSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC-HHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999977558898887554 56788899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-32 Score=301.07 Aligned_cols=190 Identities=20% Similarity=0.331 Sum_probs=156.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhhc-
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-----VPQKTSAYISQNDVHVGEMTVKETLDFSARC- 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~- 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 47999999999999999999999887 99999999887542 1245689999999888899999999875421
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+. ... +.++.++++++.+||++..++.+. .||||||||++
T Consensus 106 ~~~--------------------~~~--------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~ 146 (240)
T PRK09493 106 RGA--------------------SKE--------------EAEKQARELLAKVGLAERAHHYPS-----ELSGGQQQRVA 146 (240)
T ss_pred cCC--------------------CHH--------------HHHHHHHHHHHHcCChHHHhcChh-----hcCHHHHHHHH
Confidence 100 000 011234667899999877777664 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||||++.+|++++|||||+|||+.++..+.+.|+++++ +++|+|+++|+ .+++.+.||++++|++|++++.|+.+++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHE-IGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999999875 48899987665 46788899999999999999999988764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-32 Score=312.28 Aligned_cols=191 Identities=24% Similarity=0.381 Sum_probs=158.2
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 2 ~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+||+|+|||||||++|+|.+... + +|+|.+||+++.+.. .++.+|||||+..+|.+ ||.+||.+|-.-.
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~sa--- 452 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPSA--- 452 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCCc---
Confidence 69999999999999999999987 4 899999999886543 46789999999988876 9999999975322
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
.++.+.+.|+... .++ ....|++.++|.||+ .+..|||||||||+||||
T Consensus 453 -s~eeV~e~~k~a~---------------------------~hd--~i~~l~~GY~T~VGe-rG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 453 -SDEEVVEACKRAG---------------------------LHD--VISRLPDGYQTLVGE-RGLMLSGGEKQRVSLARA 501 (591)
T ss_pred -CHHHHHHHHHHcC---------------------------cHH--HHHhccccchhhHhh-cccccccchHHHHHHHHH
Confidence 1222333333221 011 123578899999995 566699999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
++.+|+|+++|||||+||+++..++++.+.+. ..++|+|++.|.. ...+.||+|++|++|++.+.|+++|++.
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999999999999884 3589999988765 4778999999999999999999999875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-32 Score=302.52 Aligned_cols=191 Identities=21% Similarity=0.300 Sum_probs=155.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-----------cccceEEeeccccccCCCCCHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-----------VPQKTSAYISQNDVHVGEMTVKETLD 69 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-----------~~~~~~~yv~Q~~~~~~~lTV~e~l~ 69 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 47999999999999999999999887 89999999876431 12456899999998898899999998
Q ss_pred HHhhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCccccccccc
Q 000773 70 FSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQ 149 (1293)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1293)
++........ .. +....++++++.+||.+..|+.++ .|||||
T Consensus 108 ~~~~~~~~~~-------------------~~--------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~Gq 149 (250)
T PRK11264 108 EGPVIVKGEP-------------------KE--------------EATARARELLAKVGLAGKETSYPR-----RLSGGQ 149 (250)
T ss_pred HHHHHhcCCC-------------------HH--------------HHHHHHHHHHHHcCCcchhhCChh-----hCChHH
Confidence 7532110000 00 011234567889999877776664 499999
Q ss_pred chhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcC
Q 000773 150 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229 (1293)
Q Consensus 150 rqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~ 229 (1293)
||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.| ..+++.+.+|++++|++|++++.|+
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH-~~~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTH-EMSFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeC-CHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999875 4789888755 4567888999999999999999999
Q ss_pred hhhHH
Q 000773 230 RERVL 234 (1293)
Q Consensus 230 ~~~~~ 234 (1293)
.+++.
T Consensus 228 ~~~~~ 232 (250)
T PRK11264 228 AKALF 232 (250)
T ss_pred HHHHh
Confidence 87763
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.9e-32 Score=308.20 Aligned_cols=191 Identities=20% Similarity=0.288 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-------VPQKTSAYISQND--VHVGEMTVKETLDFS 71 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~lTV~e~l~f~ 71 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .+++ .||.||+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~ 110 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG 110 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence 47999999999999999999999988 99999999887532 1245789999986 4554 5999999986
Q ss_pred hhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccc
Q 000773 72 ARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQK 150 (1293)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1293)
....+.. .. +....++++++.+||. +..++.+. .||||||
T Consensus 111 ~~~~~~~--------------------~~--------------~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~ 151 (286)
T PRK13646 111 PKNFKMN--------------------LD--------------EVKNYAHRLLMDLGFSRDVMSQSPF-----QMSGGQM 151 (286)
T ss_pred HHHcCCC--------------------HH--------------HHHHHHHHHHHHcCCChhhhhCCcc-----cCCHHHH
Confidence 5321110 00 0112356678999996 56666554 5999999
Q ss_pred hhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcCh
Q 000773 151 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 151 qRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~ 230 (1293)
||++|||||+.+|++++|||||+|||+.++..+.+.|+++.++.|+|+|+++|+ .+++.+.+||+++|++|++++.|++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~-~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD-MNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999976668999997554 5678889999999999999999998
Q ss_pred hhHHH
Q 000773 231 ERVLE 235 (1293)
Q Consensus 231 ~~~~~ 235 (1293)
+++.+
T Consensus 231 ~~~~~ 235 (286)
T PRK13646 231 KELFK 235 (286)
T ss_pred HHHHh
Confidence 87643
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=309.97 Aligned_cols=190 Identities=22% Similarity=0.327 Sum_probs=153.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCC---------------------------ccccceEEeec
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE---------------------------FVPQKTSAYIS 53 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~---------------------------~~~~~~~~yv~ 53 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+... ...++.+|||+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 47999999999999999999999987 8999999865421 11245689999
Q ss_pred ccc-ccCCCCCHHHHHHHHhhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-c
Q 000773 54 QND-VHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-I 131 (1293)
Q Consensus 54 Q~~-~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~ 131 (1293)
|++ ..+...||+|++.|+....+.. .. +..+.++++++.+||+ +
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~~gL~~~ 157 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVS--------------------KE--------------EAKKRAAKYIELVGLDES 157 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCC--------------------HH--------------HHHHHHHHHHHHcCCChh
Confidence 985 3344579999999875432110 00 0112356788999996 5
Q ss_pred ccCcccCCCcccccccccchhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHH
Q 000773 132 CKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFD 211 (1293)
Q Consensus 132 ~~~t~vg~~~~~~LSGGqrqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~ 211 (1293)
..++.+. .|||||||||+||++|+.+|++++|||||+|||+.++..+++.|+++.+ .|+|||++. |..+++.+
T Consensus 158 ~~~~~~~-----~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivt-Hd~~~~~~ 230 (305)
T PRK13651 158 YLQRSPF-----ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVT-HDLDNVLE 230 (305)
T ss_pred hhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-eCHHHHHH
Confidence 6676664 4999999999999999999999999999999999999999999999875 588988874 55667889
Q ss_pred hccceEEecCCeEEEEcChhhHH
Q 000773 212 LFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 212 ~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
.+|||++|++|++++.|+++++.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999988864
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-32 Score=301.16 Aligned_cols=180 Identities=22% Similarity=0.287 Sum_probs=151.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+||+.++...
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~------ 108 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVIDNVGLGLKG------ 108 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHHHHHhcccc------
Confidence 47999999999999999999999987 9999999976532 345689999999888889999999874210
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
. .+..++++++.+||.+..+..++ .||||||||++|||+|+
T Consensus 109 -----~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 109 -----Q-----------------------------WRDAALQALAAVGLADRANEWPA-----ALSGGQKQRVALARALI 149 (257)
T ss_pred -----h-----------------------------HHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHh
Confidence 0 00123557888999877676664 49999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChh
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~ 231 (1293)
.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|+ .+++.+.+|++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd-~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD-VSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999876668899887554 55778899999999999999988754
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-32 Score=309.51 Aligned_cols=189 Identities=21% Similarity=0.392 Sum_probs=153.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-------------------cccceEEeecccc--ccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-------------------VPQKTSAYISQND--VHV 59 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-------------------~~~~~~~yv~Q~~--~~~ 59 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.+. ..++.++||+|++ .++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 47999999999999999999999987 99999999876432 1245799999986 455
Q ss_pred CCCCHHHHHHHHhhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccC
Q 000773 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVG 138 (1293)
Q Consensus 60 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg 138 (1293)
+ .||+||+.|+....+. . .. +....++++++.+||+ +..++.+
T Consensus 131 ~-~tv~eni~~~~~~~~~-~-------------------~~--------------~~~~~~~~~l~~~gL~~~~~~~~~- 174 (320)
T PRK13631 131 K-DTIEKDIMFGPVALGV-K-------------------KS--------------EAKKLAKFYLNKMGLDDSYLERSP- 174 (320)
T ss_pred c-chHHHHHHhhHHhcCC-C-------------------HH--------------HHHHHHHHHHHHcCCChhHhcCCc-
Confidence 5 5999999886532110 0 00 0112345678899996 4555544
Q ss_pred CCcccccccccchhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEE
Q 000773 139 DEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIIL 218 (1293)
Q Consensus 139 ~~~~~~LSGGqrqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~ 218 (1293)
..|||||||||+|||||+.+|++++|||||+|||+.++..+++.|+++.+ +|+|+|+++|+ .+++.+.|||+++
T Consensus 175 ----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd-~~~~~~~adri~v 248 (320)
T PRK13631 175 ----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHT-MEHVLEVADEVIV 248 (320)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecC-HHHHHHhCCEEEE
Confidence 45999999999999999999999999999999999999999999999875 58899987554 5678889999999
Q ss_pred ecCCeEEEEcChhhHH
Q 000773 219 LSEGQIVYQGPRERVL 234 (1293)
Q Consensus 219 L~~G~i~~~G~~~~~~ 234 (1293)
|++|++++.|+++++.
T Consensus 249 l~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 249 MDKGKILKTGTPYEIF 264 (320)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=297.73 Aligned_cols=191 Identities=21% Similarity=0.372 Sum_probs=158.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++.... .
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~-- 100 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-L-- 100 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-c--
Confidence 47999999999999999999999987 899999998765432 2356899999999999999999998753210 0
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
.. .. ..+..++++++.+||++..++.+++ ||||||||++||+|+
T Consensus 101 ~~------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~laral 144 (232)
T PRK10771 101 KL------NA-------------------------AQREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARCL 144 (232)
T ss_pred CC------CH-------------------------HHHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHHH
Confidence 00 00 0012356678999998877877754 999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|+ .+++.+.+|++++|++|++++.|+.+++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~-~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS-LEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999876568899987555 56788899999999999999999987764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=292.11 Aligned_cols=215 Identities=24% Similarity=0.304 Sum_probs=169.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC-C-CCceeEEEEECCcccCCccc-------cceEEeecccc--ccCCCCCHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN-R-DLKVRGEITYNGYRLNEFVP-------QKTSAYISQND--VHVGEMTVKETLD 69 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~-~-~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTV~e~l~ 69 (1293)
+++|+|.|||||||+.++|+|+++ + ....+|+|.++|.++..... .+.++|++|++ .+.|.+||.+.+.
T Consensus 33 ~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~ 112 (316)
T COG0444 33 ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA 112 (316)
T ss_pred EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHH
Confidence 479999999999999999999997 4 33568999999997644321 24789999996 5788899999987
Q ss_pred HHhhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCccccccccc
Q 000773 70 FSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQ 149 (1293)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 149 (1293)
-..+...... ...+..+.+.++|+.+||++-. .+-+.++.+|||||
T Consensus 113 E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhelSGGM 158 (316)
T COG0444 113 EVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGM 158 (316)
T ss_pred HHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH--HHHhhCCcccCCcH
Confidence 6554211000 0011233456789999998532 13356788999999
Q ss_pred chhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcC
Q 000773 150 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229 (1293)
Q Consensus 150 rqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~ 229 (1293)
||||.||.||+.+|+++|.||||++||...+.+|++.|+++.++.|.++|++ +|+...+.++||||+||+.|+|++.|+
T Consensus 159 rQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilI-THDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 159 RQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI-THDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 9999999999999999999999999999999999999999998889999995 677889999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCChhhHHHHhc
Q 000773 230 RERVLEFFESCGFCCPERKGTADFLQEVT 258 (1293)
Q Consensus 230 ~~~~~~~f~~~G~~~~~~~~~~~~~~~~~ 258 (1293)
.+++.+ .|.+..+...+..+.
T Consensus 238 ~~~i~~--------~P~HPYT~~Ll~s~P 258 (316)
T COG0444 238 VEEIFK--------NPKHPYTRGLLNSLP 258 (316)
T ss_pred HHHHhc--------CCCChHHHHHHHhCc
Confidence 998753 355555444444443
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-32 Score=339.18 Aligned_cols=210 Identities=26% Similarity=0.339 Sum_probs=168.9
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+ +++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 334 ~i~~~~v~~~y~------------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFA------------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP--TVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECC------------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC--CCCEEEECCEEh
Confidence 588999987652 124589999999999999999999999999999999998763 589999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-------~~~~~~~~~~ 843 (1293)
.. ..+++.++|++|++.+++ .|++||+.++. + ..++++ +.++++..++.+ -.|+.++. .
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~----~~~a~~~~~~~~~i~~l~~g~~t~~~~-~ 468 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEE----VYEAAKAAAAHDFILKRSNGYDTLVGE-R 468 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhCcHHHHHhccccccchhcC-C
Confidence 43 346678999999998886 69999997641 1 223332 233444444332 23445554 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..+||||||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ....+|++++|++
T Consensus 469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~- 544 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ- 544 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999874 5899999999974 4577999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 545 G~i~~~g~~ 553 (585)
T TIGR01192 545 GRLIEKGSF 553 (585)
T ss_pred CEEEEECCH
Confidence 899999885
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-32 Score=296.67 Aligned_cols=191 Identities=24% Similarity=0.281 Sum_probs=154.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCC----CCceeEEEEECCcccCCccc-cceEEeeccccc--cCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNR----DLKVRGEITYNGYRLNEFVP-QKTSAYISQNDV--HVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~----~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~--~~~~lTV~e~l~f~~~ 73 (1293)
+++|+||||||||||+++|+|.++| + +|+|.++|.++..... ++.++|++|++. +.+.+|+.|++.+...
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~ 90 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLR 90 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHH
Confidence 4799999999999999999999987 6 8999999988754332 247899999974 5567899999977543
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc---cccCcccCCCcccccccccc
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD---ICKDTIVGDEMNRGISGGQK 150 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~---~~~~t~vg~~~~~~LSGGqr 150 (1293)
..+.. .. ..+..++++++.+||. +..++.++ .||||||
T Consensus 91 ~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~LS~G~~ 131 (230)
T TIGR02770 91 SLGKL---------SK-------------------------QARALILEALEAVGLPDPEEVLKKYPF-----QLSGGML 131 (230)
T ss_pred HcCcc---------HH-------------------------HHHHHHHHHHHHcCCCchHHHHhCChh-----hcCHHHH
Confidence 21100 00 0012356678999997 34555554 4999999
Q ss_pred hhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcCh
Q 000773 151 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 151 qRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~ 230 (1293)
|||+||||++.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++...+|++++|++|+++..|++
T Consensus 132 qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-~~~~~~~~d~i~~l~~G~i~~~~~~ 210 (230)
T TIGR02770 132 QRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD-LGVVARIADEVAVMDDGRIVERGTV 210 (230)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999876557899987554 5678889999999999999999998
Q ss_pred hhHH
Q 000773 231 ERVL 234 (1293)
Q Consensus 231 ~~~~ 234 (1293)
+++.
T Consensus 211 ~~~~ 214 (230)
T TIGR02770 211 KEIF 214 (230)
T ss_pred HHHH
Confidence 8764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-32 Score=273.48 Aligned_cols=194 Identities=26% Similarity=0.393 Sum_probs=166.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc---cceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP---QKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~---~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+|+|+|||||||||||.+++.+++.+ +|+|+++|.++..... .+.++..-|++.....+||+|-+.||.-..
T Consensus 29 iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-- 103 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY-- 103 (252)
T ss_pred eeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc--
Confidence 58999999999999999999999988 9999999998876443 355688899998889999999999985321
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
++.+ +. .+.+..+++.++.|+|++..|+.+ .+||||||||.-||+
T Consensus 104 -SqGR--------------lt---------------~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAM 148 (252)
T COG4604 104 -SQGR--------------LT---------------KEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAM 148 (252)
T ss_pred -cCCC--------------Cc---------------hHHHHHHHHHHHHhcccchHHHhH-----Hhcccchhhhhhhhe
Confidence 1111 11 122345778899999998888766 459999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
.++++.+.++||||.+.||...+..+++.|++++++.|+|+++++| +-..+..++|+|+-|++|+++..|+++++++
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlH-DINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLH-DINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEe-cccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999999999999865 5567888999999999999999999999864
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-32 Score=296.50 Aligned_cols=181 Identities=22% Similarity=0.315 Sum_probs=147.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-------QKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999987 9999999988754321 2468999999988889999999988643
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
..... .. +....+.++++.+||.+..++.++ .||||||||+
T Consensus 110 ~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 150 (221)
T TIGR02211 110 IGKKS--------------------VK--------------EAKERAYEMLEKVGLEHRINHRPS-----ELSGGERQRV 150 (221)
T ss_pred hcCCC--------------------HH--------------HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHH
Confidence 21100 00 001224567889999877777665 4999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEE
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV 225 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~ 225 (1293)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|+++|++ +++ ..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999765688999986665 455 457999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=296.41 Aligned_cols=187 Identities=25% Similarity=0.304 Sum_probs=149.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeecccc--ccCCCCCHHHHHHHHh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQND--VHVGEMTVKETLDFSA 72 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1293)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 47999999999999999999999987 999999998875432 245799999998 4667899999998765
Q ss_pred hccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccch
Q 000773 73 RCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQKK 151 (1293)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1293)
........ . .. .+...+++++.+||. +..++.++ .|||||||
T Consensus 110 ~~~~~~~~--------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~q 152 (228)
T cd03257 110 RIHGKLSK--------K----------EA--------------RKEAVLLLLVGVGLPEEVLNRYPH-----ELSGGQRQ 152 (228)
T ss_pred HhccCCcH--------H----------HH--------------HHHHHHHHHHHCCCChhHhhCCch-----hcCHHHHH
Confidence 32211000 0 00 001123567888885 45666554 49999999
Q ss_pred hhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 152 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 152 Rv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
|++|||||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.+.+|++++|++|+++..|
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD-LGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-HHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999976558899997655 46778899999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=297.26 Aligned_cols=198 Identities=22% Similarity=0.350 Sum_probs=154.9
Q ss_pred ceeEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCc
Q 000773 692 PLAMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 771 (1293)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~ 771 (1293)
+..++++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|
T Consensus 37 ~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p--~~G~I~i~g- 98 (282)
T cd03291 37 DNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP--SEGKIKHSG- 98 (282)
T ss_pred CCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC-
Confidence 345788888762 13599999999999999999999999999999999998763 479999987
Q ss_pred cCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCC
Q 000773 772 PKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA-------IVGLPGV 844 (1293)
Q Consensus 772 ~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~~~~~ 844 (1293)
.++|++|++.+++. ||+||+.+... .... .+.+.++.+++.+..+. .++. ..
T Consensus 99 ---------~i~yv~q~~~l~~~-tv~enl~~~~~------~~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~ 157 (282)
T cd03291 99 ---------RISFSSQFSWIMPG-TIKENIIFGVS------YDEY----RYKSVVKACQLEEDITKFPEKDNTVLGE-GG 157 (282)
T ss_pred ---------EEEEEeCccccccc-CHHHHhhcccc------cCHH----HHHHHHHHhCCHHHHHhccccccceecC-CC
Confidence 38999999988775 99999976321 1111 12334444454332221 2211 23
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 845 ~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+ +++. ++.|||+++|+++ ....+|++++|.+
T Consensus 158 ~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~--~~~~~d~i~~l~~- 233 (282)
T cd03291 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE- 233 (282)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999998865 5554 4799999999975 3467999999975
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|++++.|+.
T Consensus 234 G~i~~~g~~ 242 (282)
T cd03291 234 GSSYFYGTF 242 (282)
T ss_pred CEEEEECCH
Confidence 899998885
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=299.72 Aligned_cols=186 Identities=26% Similarity=0.362 Sum_probs=153.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++... ...++|++|++.+++.+||+||+.++....+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~-- 101 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVE-- 101 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCC--
Confidence 47999999999999999999999987 99999999887532 235899999998888899999998764321100
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
.. +....++++++.+||.+..++.++ .||||||||++||+||+
T Consensus 102 ------------------~~--------------~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrl~laral~ 144 (255)
T PRK11248 102 ------------------KM--------------QRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQRVGIARALA 144 (255)
T ss_pred ------------------HH--------------HHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHh
Confidence 00 001235668899999877776664 49999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEec--CCeEEEEcChh
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLS--EGQIVYQGPRE 231 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~--~G~i~~~G~~~ 231 (1293)
.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++.| ..+++.+.||++++|+ +|+++..++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH-~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITH-DIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999986556889988755 5568889999999998 59999887653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=296.88 Aligned_cols=187 Identities=25% Similarity=0.342 Sum_probs=152.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----PQKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 47999999999999999999999987 999999998865432 13468999999999999999999988654211
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhC-CccccCcccCCCcccccccccchhhHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILG-LDICKDTIVGDEMNRGISGGQKKRVTT 155 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1293)
.. .+...+++++.++ +.+..++.++ .||||||||++|
T Consensus 105 ~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv~l 142 (230)
T TIGR03410 105 RR-------------------------------------SRKIPDEIYELFPVLKEMLGRRGG-----DLSGGQQQQLAI 142 (230)
T ss_pred cc-------------------------------------hHHHHHHHHHHHHhHHHHhhCChh-----hCCHHHHHHHHH
Confidence 00 0001233455555 4555555554 499999999999
Q ss_pred HHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 156 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 156 a~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
|+||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|+++|+ .+++.+.+|++++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY-LDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999999999999876557899987555 5678889999999999999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=335.86 Aligned_cols=212 Identities=25% Similarity=0.387 Sum_probs=172.8
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+.. +++.+|+|+|++++|||.++|+||||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p--~~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP--QSGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 58899998875321 124699999999999999999999999999999999998763 479999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
++ ..+++.++|+||++.+++ .|++||+.++. + ..+++ .++++++..|+.+. .|+.+++ .
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~ 473 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR----P-DATDE----EVEAAARAAHAHEFISALPEGYDTYLGE-R 473 (576)
T ss_pred HhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCC-C
Confidence 43 345678999999998875 59999997631 1 12222 25667777776543 2444543 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecC
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++||||++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||++ +....+|+++.|++
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~- 549 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQ- 549 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999985 489999999996 45678999999985
Q ss_pred cEEEEeCCC
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 G~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 550 g~~~~~g~~ 558 (576)
T TIGR02204 550 GRIVAQGTH 558 (576)
T ss_pred CEEEeeecH
Confidence 899998885
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=331.35 Aligned_cols=218 Identities=22% Similarity=0.362 Sum_probs=181.8
Q ss_pred EEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCC
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~ 774 (1293)
++++|+++..+.. .+.+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|++.+||.++.
T Consensus 5 l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~i~ 73 (648)
T PRK10535 5 LELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP--TSGTYRVAGQDVA 73 (648)
T ss_pred EEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcC
Confidence 6777877654210 1124699999999999999999999999999999999998763 4799999998764
Q ss_pred hh---c----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000773 775 QE---T----FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGL 847 (1293)
Q Consensus 775 ~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l 847 (1293)
.. . .++.++|++|++.+++.+|+.||+.+..... ....++..+++.++++.+|+.+..|+..+ .|
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~L 145 (648)
T PRK10535 74 TLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----QL 145 (648)
T ss_pred cCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----cC
Confidence 31 1 2457999999999999999999998754322 12334445568899999999887777654 79
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEE
Q 000773 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927 (1293)
Q Consensus 848 SgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~ 927 (1293)
|||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|+++|+++ ..+.+|++++|.+ |+++
T Consensus 146 S~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i~ 222 (648)
T PRK10535 146 SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEIV 222 (648)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999964 5567999999985 8999
Q ss_pred EeCCCCC
Q 000773 928 YSGPLGR 934 (1293)
Q Consensus 928 ~~g~~~~ 934 (1293)
+.|+.++
T Consensus 223 ~~g~~~~ 229 (648)
T PRK10535 223 RNPPAQE 229 (648)
T ss_pred eecCccc
Confidence 9998753
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=289.16 Aligned_cols=186 Identities=19% Similarity=0.211 Sum_probs=150.2
Q ss_pred cccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEE-EcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR-ISGFPKKQETFARISGYCEQNDIHSPQVTVKES 800 (1293)
Q Consensus 722 iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~ 800 (1293)
+|+||||++++||+++|+||||||||||+++|+|..++ .+|+|. ++|... .+.+++.+++.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP--DEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 79999999999999999999999999999999998653 479986 766432 12345678899999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 000773 801 LIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880 (1293)
Q Consensus 801 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~ 880 (1293)
+.+...... ...++. .+++.+.+++....++.++ .||||||||++||+||+.+|++++|||||+++|+.
T Consensus 70 l~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 988654331 222222 2344556777777777655 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCCCC
Q 000773 881 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 881 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~~~ 933 (1293)
++..+.+.+.+..+ ++|+|+++|+++ .+...+|++++|.+ |++++.|+.+
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 188 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA 188 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH
Confidence 99999998865433 478999999975 56678999999985 8999999874
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=308.87 Aligned_cols=199 Identities=21% Similarity=0.241 Sum_probs=159.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-------cceEEeecccc--ccCCCCCHHHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-------QKTSAYISQND--VHVGEMTVKETLDFS 71 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTV~e~l~f~ 71 (1293)
+++|+|+||||||||+++|+|+++|+...+|+|.++|.++..... ++.++||+|++ .+.+.+|+.+++.+.
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 479999999999999999999998742348999999998764321 24699999997 688899999999765
Q ss_pred hhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccch
Q 000773 72 ARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKK 151 (1293)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 151 (1293)
........ .. +....+.++++.+||++..+. + +.++++|||||||
T Consensus 124 ~~~~~~~~-------------------~~--------------~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~Q 168 (330)
T PRK09473 124 LMLHKGMS-------------------KA--------------EAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQ 168 (330)
T ss_pred HHHhcCCC-------------------HH--------------HHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHH
Confidence 43211000 00 011235667888998753322 2 2456789999999
Q ss_pred hhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChh
Q 000773 152 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231 (1293)
Q Consensus 152 Rv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~ 231 (1293)
||+||+||+.+|+++++||||+|||+.++.++++.|+++.++.+.|+|+++ |+.+.+.+++|||++|++|++++.|+.+
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iT-Hdl~~~~~~~Dri~vm~~G~ive~g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT-HDLGVVAGICDKVLVMYAGRTMEYGNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEE-CCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999876788999864 5566888899999999999999999998
Q ss_pred hHHH
Q 000773 232 RVLE 235 (1293)
Q Consensus 232 ~~~~ 235 (1293)
++.+
T Consensus 248 ~i~~ 251 (330)
T PRK09473 248 DVFY 251 (330)
T ss_pred HHHh
Confidence 8753
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=298.84 Aligned_cols=191 Identities=19% Similarity=0.360 Sum_probs=156.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----PQKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+..+...
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 47999999999999999999999887 999999998875432 23568999999988988999999987543210
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
. . ... +.+..++++++.+||.+..++.++ .||||||||++||
T Consensus 108 ~---------~----------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la 149 (241)
T PRK10895 108 D---------L----------SAE--------------QREDRANELMEEFHIEHLRDSMGQ-----SLSGGERRRVEIA 149 (241)
T ss_pred c---------c----------CHH--------------HHHHHHHHHHHHcCCHHHhhcchh-----hCCHHHHHHHHHH
Confidence 0 0 000 011234667889999876666654 5999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+|++.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|+ .+++.+.+|++++|++|++++.|+++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~-~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHN-VRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcC-HHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 999999999999999999999999999999999865 58899987655 46788999999999999999999987764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=304.20 Aligned_cols=190 Identities=25% Similarity=0.372 Sum_probs=157.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccc-cCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDV-HVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++. .++..||.||+.++....+
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 47999999999999999999999987 999999999876432 2456899999973 6667899999988654221
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
. +.. +.++.++.+++.+||++..++.++. ||||||||++||
T Consensus 112 ~--------------------~~~--------------~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~la 152 (279)
T PRK13635 112 V--------------------PRE--------------EMVERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAIA 152 (279)
T ss_pred C--------------------CHH--------------HHHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHH
Confidence 0 000 0012356688999998888877754 999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||+.+|++++|||||+|||+.++..+++.|++++++.++|+|++.|++ +++. .+|++++|++|++++.|+.+++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999876689999986665 4565 59999999999999999988765
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=291.39 Aligned_cols=186 Identities=22% Similarity=0.314 Sum_probs=153.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-cccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+....... .
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~-~ 101 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK-L 101 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC-c
Confidence 47999999999999999999999987 99999999887542 2345689999999999999999999875321100 0
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
. . ..+..++++++.+||++..++.+. .||||||||++|||++
T Consensus 102 ~-------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral 143 (213)
T TIGR01277 102 N-------------------A--------------EQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQRVALARCL 143 (213)
T ss_pred c-------------------H--------------HHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHHHHHHHHH
Confidence 0 0 001234567899999877777665 4999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcC
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~ 229 (1293)
+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|+ ..++.+.+|++++|++|++++.|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~-~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH-LSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999876558899987555 567788999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-32 Score=305.42 Aligned_cols=192 Identities=28% Similarity=0.379 Sum_probs=157.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCC--c---cccceEEeeccccc-cCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE--F---VPQKTSAYISQNDV-HVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~--~---~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++. .+...||+||+.++...
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 47999999999999999999999987 9999999988741 1 23457999999863 33457999999886432
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+. +.. +.+..++.+++.+||.+..++.+++ ||||||||++
T Consensus 111 ~~~--------------------~~~--------------~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrl~ 151 (283)
T PRK13636 111 LKL--------------------PED--------------EVRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRVA 151 (283)
T ss_pred cCC--------------------CHH--------------HHHHHHHHHHHHCCChhhhhCCccc-----CCHHHHHHHH
Confidence 110 000 0112356688999998877777654 9999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||||+.+|++++|||||+|||+.++..+.+.|++++++.|+|++++.| ..+++.+.|||+++|++|++++.|+++++.
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH-~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATH-DIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec-CHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998766889999755 556788899999999999999999998875
Q ss_pred H
Q 000773 235 E 235 (1293)
Q Consensus 235 ~ 235 (1293)
+
T Consensus 231 ~ 231 (283)
T PRK13636 231 A 231 (283)
T ss_pred c
Confidence 3
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=332.17 Aligned_cols=200 Identities=28% Similarity=0.452 Sum_probs=164.5
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|++++.+. +++++|+|+|++++|||.+||+||||||||||+|+|+|..++ .+|+|.+||.+.
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP--TEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEeh
Confidence 5889999887632 124699999999999999999999999999999999998764 479999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~~~~~ 843 (1293)
++ ..+++.++||+|++.+++ .|++||+.++. ...+++ .++++++..++.+. .|+.+|. .
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~ 455 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR-----PDASDA----EIRRALERAGLDEFVAALPQGLDTLIGE-G 455 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC-----CCCCHH----HHHHHHHHcCcHHHHHhCcccccchhcc-c
Confidence 43 456778999999999886 59999997642 112222 25667777776543 3566664 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhhee
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 844 ~~~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
...||||||||++|||||+++|++++||||||+||+.+++.+.+.++++. +++|+|+++|++ +..+.+|++++|
T Consensus 456 g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 45799999999999999999999999999999999999999999999875 589999999996 456789998875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=260.09 Aligned_cols=181 Identities=24% Similarity=0.344 Sum_probs=155.3
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 2 ~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
++|+|||||||||||-+++|+..|+ +|+|.+.|+++.+.. ..+.+|+|+|...++|++|..||+...+++
T Consensus 39 vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL 115 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL 115 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhh
Confidence 6899999999999999999999988 999999999886543 236789999999999999999999987776
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
++...+ +......+.|+.+||.+-.+. ++.+|||||+|||+
T Consensus 116 ~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVA 156 (228)
T COG4181 116 RGESSA----------------------------------DSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVA 156 (228)
T ss_pred cCCccc----------------------------------cHHHHHHHHHHHhCccccccc-----CccccCchHHHHHH
Confidence 542110 112234567899999876554 45679999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEE
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVY 226 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~ 226 (1293)
||||++..|+|||-||||..||..+...|.++|-.+.+++|.|.++++|+| .....|||.+-|.+|+++.
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999999999999988876 4778999999999999874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=307.69 Aligned_cols=193 Identities=19% Similarity=0.207 Sum_probs=158.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeecccc--ccCCCCCHHHHHHHHh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQND--VHVGEMTVKETLDFSA 72 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1293)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.... .++.++||+|++ .+.+.+||.+++....
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 47999999999999999999999887 899999998875432 245799999997 5888899999997754
Q ss_pred hccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCcc-ccCcccCCCcccccccccch
Q 000773 73 RCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDI-CKDTIVGDEMNRGISGGQKK 151 (1293)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrq 151 (1293)
...... ... +.+..+.++++.+||.+ ..++.+ ..|||||||
T Consensus 120 ~~~~~~-------------------~~~--------------~~~~~~~~~l~~~gL~~~~~~~~p-----~~LSgGq~Q 161 (327)
T PRK11308 120 LINTSL-------------------SAA--------------ERREKALAMMAKVGLRPEHYDRYP-----HMFSGGQRQ 161 (327)
T ss_pred HHccCC-------------------CHH--------------HHHHHHHHHHHHCCCChHHhcCCC-----ccCCHHHHH
Confidence 321100 000 01223567899999963 556555 459999999
Q ss_pred hhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChh
Q 000773 152 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231 (1293)
Q Consensus 152 Rv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~ 231 (1293)
||+|||||+.+|++|++||||+|||..++..+++.|+++.++.|.|+|++ +|+...+.+++|+|++|++|++++.|+.+
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~i-THdl~~~~~~adrv~vm~~G~ive~g~~~ 240 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFI-SHDLSVVEHIADEVMVMYLGRCVEKGTKE 240 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999987678899886 55667888899999999999999999998
Q ss_pred hHHH
Q 000773 232 RVLE 235 (1293)
Q Consensus 232 ~~~~ 235 (1293)
++.+
T Consensus 241 ~~~~ 244 (327)
T PRK11308 241 QIFN 244 (327)
T ss_pred HHhc
Confidence 8754
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-32 Score=276.98 Aligned_cols=193 Identities=26% Similarity=0.347 Sum_probs=169.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
|.+++|||||||||++++|.|+++|+ +|+|+++|.+++.. .+.++||.|.+.-+++.+||.|.|.|-+++++...
T Consensus 30 i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~- 104 (300)
T COG4152 30 IFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQE-IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPK- 104 (300)
T ss_pred EEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhh-hhhhcccChhhhccCccCcHHHHHHHHHHhcCCcH-
Confidence 57899999999999999999999998 99999999988654 34579999999999999999999999999877421
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
. +.+...+.+|+.+++......+|- .||.|++|++.+..+++
T Consensus 105 -------------------~--------------e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQKIQfisavi 146 (300)
T COG4152 105 -------------------A--------------EIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQKIQFISAVI 146 (300)
T ss_pred -------------------H--------------HHHHHHHHHHHhccccccccchHH-----HhhhhhhHHHHHHHHHh
Confidence 1 112345678999999887777664 59999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHHHHH
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~~f~ 238 (1293)
++|++++||||+|||||.+.+.+-+.+.++.. +|.|||.+. |-+..+.++||++++|++|+.|.+|+.+++...|+
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSs-H~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSS-HRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEec-chHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999999865 699999985 56789999999999999999999999999987654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=305.13 Aligned_cols=190 Identities=23% Similarity=0.355 Sum_probs=154.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-------cccceEEeeccccc-cCCCCCHHHHHHHHh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-------VPQKTSAYISQNDV-HVGEMTVKETLDFSA 72 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~ 72 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+..+||.||+.++.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 47999999999999999999999988 99999999877431 12356899999862 233579999998865
Q ss_pred hccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccch
Q 000773 73 RCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQKK 151 (1293)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1293)
...... .. +....++++++.+||. +..++.+++ |||||||
T Consensus 112 ~~~~~~--------------------~~--------------~~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~q 152 (287)
T PRK13641 112 KNFGFS--------------------ED--------------EAKEKALKWLKKVGLSEDLISKSPFE-----LSGGQMR 152 (287)
T ss_pred HHcCCC--------------------HH--------------HHHHHHHHHHHHcCCChhHhhCCccc-----CCHHHHH
Confidence 321100 00 0012356688999997 566776654 9999999
Q ss_pred hhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChh
Q 000773 152 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231 (1293)
Q Consensus 152 Rv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~ 231 (1293)
|++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|++. |..+++.+.||++++|++|++++.|+++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivs-H~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVT-HNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999865 588998864 5567888999999999999999999988
Q ss_pred hHH
Q 000773 232 RVL 234 (1293)
Q Consensus 232 ~~~ 234 (1293)
++.
T Consensus 231 ~~~ 233 (287)
T PRK13641 231 EIF 233 (287)
T ss_pred HHh
Confidence 764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-32 Score=340.33 Aligned_cols=192 Identities=27% Similarity=0.384 Sum_probs=154.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
.+||+||||||||||+++|+|++ |+ +|+|.+||.++.+.. .++.++||+|++++|.. |++|||.++....
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~~~-- 450 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNPDA-- 450 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCCCC--
Confidence 37999999999999999999999 76 899999999887643 35789999999998876 9999999863210
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
.+.++.+..+.+ ..++.++ .|++..||.+|+ .+..||||||||++|||
T Consensus 451 --------------------~~eei~~al~~a---------~l~~~i~--~lp~G~dT~vge-~G~~LSGGQrQRialAR 498 (588)
T PRK11174 451 --------------------SDEQLQQALENA---------WVSEFLP--LLPQGLDTPIGD-QAAGLSVGQAQRLALAR 498 (588)
T ss_pred --------------------CHHHHHHHHHHh---------CHHHHHH--hccccccccccc-CCCCCCHHHHHHHHHHH
Confidence 001111111111 0111222 356778999996 46779999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|++++|+|++||||||+||+.++..+.+.|+++. +++|+|++.|++ +..+.+|+|++|++|++++.|+++++.+
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 9999999999999999999999999999999875 478999988887 4667899999999999999999999864
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=293.18 Aligned_cols=180 Identities=24% Similarity=0.353 Sum_probs=148.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999887 999999998775421 235689999999999999999999886542
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+.. . . +.++.++++++.+||++..++.++ +||||||||++
T Consensus 106 ~~~~--~------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 146 (214)
T cd03292 106 TGVP--P------------------R--------------EIRKRVPAALELVGLSHKHRALPA-----ELSGGEQQRVA 146 (214)
T ss_pred cCCC--H------------------H--------------HHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHH
Confidence 2100 0 0 001234567888999887777665 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQI 224 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i 224 (1293)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++.|+ .+++.+.+|++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~-~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHA-KELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999865 47898887555 4677788999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=302.69 Aligned_cols=191 Identities=26% Similarity=0.395 Sum_probs=156.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccc-cCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDV-HVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+...||.||+.++....+
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 47999999999999999999999987 999999998775422 2356899999963 3446799999987643211
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
.. .. +.++.++.+++.+||.+..++.+++ ||||||||++||
T Consensus 109 ~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrl~la 149 (277)
T PRK13652 109 LD--------------------EE--------------TVAHRVSSALHMLGLEELRDRVPHH-----LSGGEKKRVAIA 149 (277)
T ss_pred CC--------------------HH--------------HHHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHHH
Confidence 00 00 0112356688999998877877754 999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.|+ .+++.+.|||+++|++|++++.|+++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~-~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ-LDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999999999999999999977558899987555 56888999999999999999999998875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=300.00 Aligned_cols=206 Identities=22% Similarity=0.288 Sum_probs=158.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----PQKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .+..++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 47999999999999999999999987 999999998875432 12347899999999999999999998643110
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
... ........ ...... ..+....++..++.+||.+..++.+++ ||||||||++||
T Consensus 110 ~~~---~~~~~~~~----~~~~~~------------~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la 165 (255)
T PRK11300 110 KTG---LFSGLLKT----PAFRRA------------ESEALDRAATWLERVGLLEHANRQAGN-----LAYGQQRRLEIA 165 (255)
T ss_pred cch---hhhhhccc----cccccc------------hhHHHHHHHHHHHhCChhhhhhCChhh-----CCHHHHHHHHHH
Confidence 000 00000000 000000 001112356678899998777777654 999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|+++|+ .+++.+.||++++|++|++++.|+++++.
T Consensus 166 ~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~-~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 166 RCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD-MKLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC-HHHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 999999999999999999999999999999999876558899997554 56888999999999999999999987753
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=298.99 Aligned_cols=191 Identities=27% Similarity=0.439 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++......
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 47999999999999999999999887 999999998765422 235689999998887889999999875431110
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
. . . +.+..++.+++.+||.+..++.+++ |||||||||+||+
T Consensus 107 -~-~------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGe~qrv~la~ 147 (258)
T PRK13548 107 -S-R------------------A--------------EDDALVAAALAQVDLAHLAGRDYPQ-----LSGGEQQRVQLAR 147 (258)
T ss_pred -C-c------------------H--------------HHHHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHHH
Confidence 0 0 0 0012245678899998877777754 9999999999999
Q ss_pred HHh------cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChh
Q 000773 158 MIV------GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231 (1293)
Q Consensus 158 al~------~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~ 231 (1293)
||+ .+|++++|||||+|||+.++..+.+.|+++++++++|+|++.| +..++.+.+|++++|++|++++.|+++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH-~~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH-DLNLAARYADRIVLLHQGRLVADGTPA 226 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC-CHHHHHHhcCEEEEEECCEEEeeCCHH
Confidence 999 5999999999999999999999999999987456889988755 456788899999999999999999987
Q ss_pred hHH
Q 000773 232 RVL 234 (1293)
Q Consensus 232 ~~~ 234 (1293)
++.
T Consensus 227 ~~~ 229 (258)
T PRK13548 227 EVL 229 (258)
T ss_pred HHh
Confidence 764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=300.01 Aligned_cols=192 Identities=22% Similarity=0.296 Sum_probs=155.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeecccc--ccCCCCCHHHHHHHHh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQND--VHVGEMTVKETLDFSA 72 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~lTV~e~l~f~~ 72 (1293)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+.+.+||+|++.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999987 999999998875432 235699999996 4667899999998754
Q ss_pred hccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccch
Q 000773 73 RCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQKK 151 (1293)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrq 151 (1293)
..... . ... +.+..++++++.+||. +..++.++ .|||||||
T Consensus 116 ~~~~~---------~----------~~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGe~q 157 (265)
T TIGR02769 116 RHLTS---------L----------DES--------------EQKARIAELLDMVGLRSEDADKLPR-----QLSGGQLQ 157 (265)
T ss_pred HHhcC---------C----------CHH--------------HHHHHHHHHHHHcCCChhhhhCChh-----hCCHHHHH
Confidence 31100 0 000 0112356678999996 56666554 59999999
Q ss_pred hhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChh
Q 000773 152 RVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231 (1293)
Q Consensus 152 Rv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~ 231 (1293)
|++|||||+.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++.| ..+.+.+.+|++++|++|++++.|+.+
T Consensus 158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH-~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC-CHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 9999999999999999999999999999999999999987656889998755 456788899999999999999999988
Q ss_pred hHH
Q 000773 232 RVL 234 (1293)
Q Consensus 232 ~~~ 234 (1293)
++.
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=298.58 Aligned_cols=191 Identities=23% Similarity=0.345 Sum_probs=156.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc----------------cccceEEeeccccccCCCCCH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF----------------VPQKTSAYISQNDVHVGEMTV 64 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~lTV 64 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++..||
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 47999999999999999999999987 99999999876432 124568999999999999999
Q ss_pred HHHHHHHhhcc-CCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCccc
Q 000773 65 KETLDFSARCL-GVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNR 143 (1293)
Q Consensus 65 ~e~l~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 143 (1293)
.||+.++.... +. ...+ .+..+++.++.+|+.+..++.+.
T Consensus 105 ~~nl~~~~~~~~~~--------------------~~~~--------------~~~~~~~~l~~~gl~~~~~~~~~----- 145 (252)
T TIGR03005 105 LDNVTEAPVLVLGM--------------------ARAE--------------AEKRAMELLDMVGLADKADHMPA----- 145 (252)
T ss_pred HHHHHHHHHHhcCC--------------------CHHH--------------HHHHHHHHHHHcCChhHhhcChh-----
Confidence 99998753210 00 0000 01124567888999877666554
Q ss_pred ccccccchhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCe
Q 000773 144 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQ 223 (1293)
Q Consensus 144 ~LSGGqrqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~ 223 (1293)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.+++||+++|++|+
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~-~~~~~~~~d~i~~l~~G~ 224 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE-MGFAREFADRVCFFDKGR 224 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-HHHHHHhcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999877568899997655 567888999999999999
Q ss_pred EEEEcChhhHH
Q 000773 224 IVYQGPRERVL 234 (1293)
Q Consensus 224 i~~~G~~~~~~ 234 (1293)
+++.|+.+++.
T Consensus 225 i~~~g~~~~~~ 235 (252)
T TIGR03005 225 IVEQGKPDEIF 235 (252)
T ss_pred EEEeCCHHHHh
Confidence 99999987764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=292.11 Aligned_cols=179 Identities=25% Similarity=0.374 Sum_probs=147.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999887 999999998875422 235689999999989899999999886542
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+.. ..+ .+..++++++.+||++..++.+. .||||||||++
T Consensus 107 ~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~ 147 (214)
T TIGR02673 107 RGKK--------------------ERE--------------IQRRVGAALRQVGLEHKADAFPE-----QLSGGEQQRVA 147 (214)
T ss_pred cCCC--------------------HHH--------------HHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHH
Confidence 2100 000 01234667889999876676665 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCe
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQ 223 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~ 223 (1293)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++.|+ .+++.++||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~-~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHD-LSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999865 47898887655 568888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=299.04 Aligned_cols=190 Identities=22% Similarity=0.293 Sum_probs=154.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCC----------------ccccceEEeeccccccCCCCCH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE----------------FVPQKTSAYISQNDVHVGEMTV 64 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~----------------~~~~~~~~yv~Q~~~~~~~lTV 64 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 47999999999999999999999987 8999999987642 0124568999999999999999
Q ss_pred HHHHHHHhh-ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCcccc-CcccCCCcc
Q 000773 65 KETLDFSAR-CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICK-DTIVGDEMN 142 (1293)
Q Consensus 65 ~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~vg~~~~ 142 (1293)
+||+.++.. .... ... +.+..+.++++.+||.+.. ++.+
T Consensus 110 ~enl~~~~~~~~~~--------------------~~~--------------~~~~~~~~~l~~~gl~~~~~~~~~----- 150 (257)
T PRK10619 110 LENVMEAPIQVLGL--------------------SKQ--------------EARERAVKYLAKVGIDERAQGKYP----- 150 (257)
T ss_pred HHHHHHHHHHhCCC--------------------CHH--------------HHHHHHHHHHHHcCCChhhhhCCc-----
Confidence 999987542 1100 000 0112345678999997643 5444
Q ss_pred cccccccchhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCC
Q 000773 143 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEG 222 (1293)
Q Consensus 143 ~~LSGGqrqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G 222 (1293)
..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|++.|+ ..++.+.|||+++|++|
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~-~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHE-MGFARHVSSHVIFLHQG 228 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhcCEEEEEECC
Confidence 45999999999999999999999999999999999999999999999875 58899887554 56788899999999999
Q ss_pred eEEEEcChhhHH
Q 000773 223 QIVYQGPRERVL 234 (1293)
Q Consensus 223 ~i~~~G~~~~~~ 234 (1293)
++++.|+++++.
T Consensus 229 ~i~~~~~~~~~~ 240 (257)
T PRK10619 229 KIEEEGAPEQLF 240 (257)
T ss_pred EEEEeCCHHHhh
Confidence 999999987764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=296.63 Aligned_cols=188 Identities=23% Similarity=0.380 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----PQKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 109 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE 109 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccC
Confidence 47999999999999999999999987 999999998875432 23568999999999998999999987542110
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHh-CCccccCcccCCCcccccccccchhhHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKIL-GLDICKDTIVGDEMNRGISGGQKKRVTT 155 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1293)
. ... +..++.+++.+ ++.+..++.+ ..||||||||++|
T Consensus 110 ---~----~~~-----------------------------~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrl~l 148 (237)
T PRK11614 110 ---R----DQF-----------------------------QERIKWVYELFPRLHERRIQRA-----GTMSGGEQQMLAI 148 (237)
T ss_pred ---h----hHH-----------------------------HHHHHHHHHHHHHHHHHHhCch-----hhCCHHHHHHHHH
Confidence 0 000 01123345555 3555455544 4599999999999
Q ss_pred HHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 156 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 156 a~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.| ..+++.+.+||+++|++|++++.|+++++.
T Consensus 149 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH-~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 149 GRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQ-NANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-cHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999999999999999999999999999999875 4889988755 456888999999999999999999988764
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-32 Score=262.92 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=157.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----------------ccceEEeeccccccCCCCCH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----------------PQKTSAYISQNDVHVGEMTV 64 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----------------~~~~~~yv~Q~~~~~~~lTV 64 (1293)
++.|+|.|||||||+|++|.-+..|+ .|.|.+||+.+.... .+.+.++|+|+..++..+||
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv 110 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV 110 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH
Confidence 46899999999999999999999888 999999998753211 12346899999999999999
Q ss_pred HHHHHHHhhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccc
Q 000773 65 KETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRG 144 (1293)
Q Consensus 65 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~ 144 (1293)
.||+.-+.... ...++ .+..+..+.+|...||.+.+|... ..
T Consensus 111 LeNViEaPvhV---------Lg~~k------------------------~ea~e~Ae~~L~kVGi~ek~~~YP-----~~ 152 (256)
T COG4598 111 LENVIEAPVHV---------LGVSK------------------------AEAIERAEKYLAKVGIAEKADAYP-----AH 152 (256)
T ss_pred HHHHHhcchHh---------hcCCH------------------------HHHHHHHHHHHHHhCchhhhhcCc-----cc
Confidence 99997543211 11111 112234577899999998877554 45
Q ss_pred cccccchhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeE
Q 000773 145 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQI 224 (1293)
Q Consensus 145 LSGGqrqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i 224 (1293)
|||||+||++|||||+.+|+++++|||||+|||.-.-++++.++++++ .|+|.+++ +|.+..+.+...+|+.|++|.|
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~V-THEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVV-THEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEE-eeehhHHHhhhhheEEeeccee
Confidence 999999999999999999999999999999999999999999999997 48998886 5567788889999999999999
Q ss_pred EEEcChhhHH
Q 000773 225 VYQGPRERVL 234 (1293)
Q Consensus 225 ~~~G~~~~~~ 234 (1293)
-++|+++++.
T Consensus 231 EE~G~P~qvf 240 (256)
T COG4598 231 EEEGPPEQVF 240 (256)
T ss_pred cccCChHHHh
Confidence 9999999874
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=299.13 Aligned_cols=190 Identities=22% Similarity=0.281 Sum_probs=155.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccc-cCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDV-HVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++. +++..|+++|+.+.....+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 47999999999999999999999987 999999998875422 2456899999974 6777899999988653211
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
.. ..+ ....++.+++.+||.+..++.++ .||||||||++||
T Consensus 114 ~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 154 (269)
T PRK13648 114 VP--------------------YDE--------------MHRRVSEALKQVDMLERADYEPN-----ALSGGQKQRVAIA 154 (269)
T ss_pred CC--------------------HHH--------------HHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHH
Confidence 00 000 01234567899999887776664 4999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||++.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|++ .++.. +||+++|++|++++.|+++++.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999998765588999987765 45654 9999999999999999988764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=295.59 Aligned_cols=186 Identities=20% Similarity=0.329 Sum_probs=152.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc---cccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF---VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.++|++|++.+++ .||+||+.++.....
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~- 105 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG- 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-
Confidence 47999999999999999999999987 99999999876532 22456899999988876 699999976432110
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccchhhHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
. .+..++.+++.+||+ +..++.++ .||||||||++||
T Consensus 106 -~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrl~la 143 (241)
T PRK14250 106 -E------------------------------------KNVDVEYYLSIVGLNKEYATRDVK-----NLSGGEAQRVSIA 143 (241)
T ss_pred -c------------------------------------HHHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHHH
Confidence 0 001234578888996 45555544 5999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+|++.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++.| +.+++.+.+|++++|++|+++..|+++++.
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH-~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH-NMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec-cHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999987655889988755 556788899999999999999999988764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=290.88 Aligned_cols=183 Identities=26% Similarity=0.365 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccCCCCCHHHHHHHHhhccCCCcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 80 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++.+|++||+.+.....+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~--- 100 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLGL--- 100 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCC---
Confidence 47999999999999999999999987 999999998765432 24689999999888889999999876432110
Q ss_pred hhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHHh
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al~ 160 (1293)
+ +..++.+++.+||++..|+.+++ ||||||||++||||++
T Consensus 101 -----------------~------------------~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral~ 140 (223)
T TIGR03740 101 -----------------P------------------DSRIDEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIALL 140 (223)
T ss_pred -----------------C------------------HHHHHHHHHHcCCcHHHhhhHhh-----CCHHHHHHHHHHHHHh
Confidence 0 01235578889998777776654 9999999999999999
Q ss_pred cCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhh
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRER 232 (1293)
Q Consensus 161 ~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~ 232 (1293)
.+|++++|||||+|||+.++..+.+.|+++++ .++|+|+++|+ .+++.+.+|++++|++|++++.|++.+
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~-~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHI-LSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCC-HHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999865 57898887665 457888999999999999999998643
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=293.16 Aligned_cols=182 Identities=25% Similarity=0.325 Sum_probs=149.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccc-------cceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-------QKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||.||+.+...
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 47999999999999999999999987 9999999987754321 2468999999988999999999987643
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhh
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 153 (1293)
..... .. +.+..++++++.+||.+..++.+++ ||||||||+
T Consensus 115 ~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrl 155 (228)
T PRK10584 115 LRGES--------------------SR--------------QSRNGAKALLEQLGLGKRLDHLPAQ-----LSGGEQQRV 155 (228)
T ss_pred hcCCC--------------------HH--------------HHHHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHHH
Confidence 21100 00 0112346678999998777776654 999999999
Q ss_pred HHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEE
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVY 226 (1293)
Q Consensus 154 ~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~ 226 (1293)
+||+||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|++ +++ +.+|++++|++|++++
T Consensus 156 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 156 ALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999998766688999976665 455 5599999999999875
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=300.42 Aligned_cols=190 Identities=27% Similarity=0.357 Sum_probs=155.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccc-cCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDV-HVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.++|++|++. .++.+||+||+.++.....
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 47999999999999999999999987 999999998875422 3457899999974 5677899999988643211
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
. ... +.+..++++++.+||.+..++.++ .||||||||++||
T Consensus 114 ~--------------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la 154 (271)
T PRK13632 114 V--------------------PPK--------------KMKDIIDDLAKKVGMEDYLDKEPQ-----NLSGGQKQRVAIA 154 (271)
T ss_pred C--------------------CHH--------------HHHHHHHHHHHHcCCHHHhhCCcc-----cCCHHHHHHHHHH
Confidence 0 000 011235668899999887777765 4999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|||+.+|++++|||||+|||+.++..+++.|+++++++++|+|++.|++. ++ ..+|++++|++|++++.|+.+++.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999987655689999877664 55 479999999999999999987754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=292.77 Aligned_cols=191 Identities=26% Similarity=0.392 Sum_probs=158.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++....+..
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~- 102 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVD- 102 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCC-
Confidence 47999999999999999999999987 899999998875422 2457899999999999999999998764321100
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
..+ ....+.++++.+||.+..++.+.+ ||||||||++||||+
T Consensus 103 -------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~laral 144 (235)
T cd03299 103 -------------------KKE--------------IERKVLEIAEMLGIDHLLNRKPET-----LSGGEQQRVAIARAL 144 (235)
T ss_pred -------------------HHH--------------HHHHHHHHHHHcCChhHHhcCccc-----CCHHHHHHHHHHHHH
Confidence 000 011245578889998877777754 999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||+|||+.++..+++.|++++.+.++|+|++.|++ +++.+.+|++++|++|++++.|+.+++.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999998765588999986654 6788899999999999999999987664
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=295.28 Aligned_cols=192 Identities=22% Similarity=0.368 Sum_probs=153.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRD--LKVRGEITYNGYRLNEF-----VPQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+||||||||||+++|+|.++|+ ...+|+|.++|.++... ..++.++|++|++.+++ +|++||+.+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~ 107 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPR 107 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHH
Confidence 47999999999999999999999763 12379999999887531 12457899999998888 999999988654
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc----cccCcccCCCccccccccc
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD----ICKDTIVGDEMNRGISGGQ 149 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1293)
..+... .. +.+..++.+++.+||. +..++.++ .|||||
T Consensus 108 ~~~~~~-------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgG~ 149 (247)
T TIGR00972 108 LHGIKD-------------------KK--------------ELDEIVEESLKKAALWDEVKDRLHDSAL-----GLSGGQ 149 (247)
T ss_pred hcCCCC-------------------HH--------------HHHHHHHHHHHHcCCCcchhhHhhCCcc-----cCCHHH
Confidence 321000 00 0012345678889997 55555554 599999
Q ss_pred chhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcC
Q 000773 150 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229 (1293)
Q Consensus 150 rqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~ 229 (1293)
|||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|+ .+++.+.+|++++|++|++++.|+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~-~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHN-MQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecC-HHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999865 3788887554 567888999999999999999999
Q ss_pred hhhHH
Q 000773 230 RERVL 234 (1293)
Q Consensus 230 ~~~~~ 234 (1293)
++++.
T Consensus 227 ~~~~~ 231 (247)
T TIGR00972 227 TEQIF 231 (247)
T ss_pred HHHHH
Confidence 88764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=294.92 Aligned_cols=196 Identities=21% Similarity=0.329 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----ccceEEeeccccccCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----PQKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 47999999999999999999999987 999999998775432 13458999999999999999999988643110
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
..+..... .... +.+..++..++.+|+++..++.+++ |||||||||+||
T Consensus 107 --~~~~~~~~----------~~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrv~la 155 (242)
T TIGR03411 107 --SVFASLFF----------RLSA--------------EEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEIG 155 (242)
T ss_pred --cccccccc----------ccHH--------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHH
Confidence 00000000 0000 0122356788999998877776654 999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~ 233 (1293)
||++.+|++++|||||+|||+.++..+++.|+++++ ++|+|++.|+ .+++.+.||++++|++|++++.|+.+++
T Consensus 156 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~-~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 156 MLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHD-MEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECC-HHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 999999999999999999999999999999999864 5788887554 5678889999999999999999988775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=328.76 Aligned_cols=196 Identities=20% Similarity=0.306 Sum_probs=158.8
Q ss_pred ccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 000773 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 717 ~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lT 796 (1293)
++++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|. +.+||++|++.+++.+|
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--------~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 11 FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP--SAGNVSLDPN--------ERLGKLRQDQFAFEEFT 80 (530)
T ss_pred eCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--------CEEEEEeccCCcCCCCc
Confidence 3456799999999999999999999999999999999997653 4799999873 34899999999999999
Q ss_pred HHHHHHHHHH-hc-----------CCC-CC----------------CHHHHHHHHHHHHHHcCCcccc-cccccCCCCCC
Q 000773 797 VKESLIYSAF-LR-----------LAK-EV----------------SKEDKIIFVEEVMDLVELESLK-DAIVGLPGVTG 846 (1293)
Q Consensus 797 v~e~l~~~~~-~~-----------~~~-~~----------------~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~ 846 (1293)
|+|++.+... .+ .+. .. ...+...+++++++.+|+.+.. ++.++ .
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~ 155 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMS-----E 155 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchh-----h
Confidence 9999986421 00 000 00 0011234578899999997543 33433 7
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEE
Q 000773 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926 (1293)
Q Consensus 847 lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~ 926 (1293)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||++||+++ .+.+.+|++++|.+ |++
T Consensus 156 LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~~~~d~i~~l~~-g~i 230 (530)
T PRK15064 156 VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLNSVCTHMADLDY-GEL 230 (530)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHHhhcceEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999864 5899999999975 56788999999985 788
Q ss_pred -EEeCCC
Q 000773 927 -IYSGPL 932 (1293)
Q Consensus 927 -~~~g~~ 932 (1293)
++.|+.
T Consensus 231 ~~~~g~~ 237 (530)
T PRK15064 231 RVYPGNY 237 (530)
T ss_pred EEecCCH
Confidence 577875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=305.43 Aligned_cols=196 Identities=21% Similarity=0.236 Sum_probs=156.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC-ceeEEEEECCcccCCccc-------cceEEeecccc--ccCCCCCHHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDL-KVRGEITYNGYRLNEFVP-------QKTSAYISQND--VHVGEMTVKETLDF 70 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~-~~~G~v~~~g~~~~~~~~-------~~~~~yv~Q~~--~~~~~lTV~e~l~f 70 (1293)
+++|+|+||||||||+++|+|++++.. ..+|+|.++|.++..... ++.++||+|++ .+.+.+||.+++..
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 479999999999999999999987421 248999999998754321 13589999997 47888999999876
Q ss_pred HhhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCcc---ccCcccCCCccccccc
Q 000773 71 SARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDI---CKDTIVGDEMNRGISG 147 (1293)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~~t~vg~~~~~~LSG 147 (1293)
........ .. .+.++.++++|+.+||.+ ..++ ++.+|||
T Consensus 115 ~l~~~~~~-------------------~~--------------~~~~~~~~~~L~~~gL~~~~~~l~~-----~p~~LSg 156 (326)
T PRK11022 115 AIKVHQGG-------------------NK--------------KTRRQRAIDLLNQVGIPDPASRLDV-----YPHQLSG 156 (326)
T ss_pred HHHHhcCC-------------------CH--------------HHHHHHHHHHHHHCCCCChHHHHhC-----CchhCCH
Confidence 54321000 00 001233567889999974 2333 4456999
Q ss_pred ccchhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEE
Q 000773 148 GQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQ 227 (1293)
Q Consensus 148 GqrqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~ 227 (1293)
||||||+||+||+.+|+++++||||+|||+.++..+++.|+++.++.|.|+|+++ |+.+.+.+++|||++|++|++++.
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iT-Hdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLIT-HDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999876789999864 556678889999999999999999
Q ss_pred cChhhHHH
Q 000773 228 GPRERVLE 235 (1293)
Q Consensus 228 G~~~~~~~ 235 (1293)
|+.+++.+
T Consensus 236 g~~~~~~~ 243 (326)
T PRK11022 236 GKAHDIFR 243 (326)
T ss_pred CCHHHHhh
Confidence 99988753
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=285.40 Aligned_cols=166 Identities=43% Similarity=0.742 Sum_probs=140.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeeccccccCCCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|.++|....+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--- 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---
Confidence 4799999999999999999999982112399999999887543 23467899999999999999999998753210
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
.++ ....||||||||++||+|
T Consensus 112 ------------------------------------------------------~~~-----~~~~LS~Ge~qrl~lara 132 (202)
T cd03233 112 ------------------------------------------------------GNE-----FVRGISGGERKRVSIAEA 132 (202)
T ss_pred ------------------------------------------------------ccc-----chhhCCHHHHHHHHHHHH
Confidence 112 224599999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
|+.+|++++|||||+|||+.++..+++.|++++++.+.|+++++||+.+++.+.+|++++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999976557787877788888899999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=299.90 Aligned_cols=189 Identities=27% Similarity=0.388 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc----ccceEEeeccccc-cCCCCCHHHHHHHHhhcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----PQKTSAYISQNDV-HVGEMTVKETLDFSARCL 75 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~ 75 (1293)
+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+...||.||+.++....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 47999999999999999999999987 999999998875421 2456899999975 366789999998764321
Q ss_pred CCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHH
Q 000773 76 GVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTT 155 (1293)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1293)
+. +.. +.++.++++++.+||++..++.+++ ||||||||++|
T Consensus 107 ~~--------------------~~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~l 147 (274)
T PRK13644 107 CL--------------------PPI--------------EIRKRVDRALAEIGLEKYRHRSPKT-----LSGGQGQCVAL 147 (274)
T ss_pred CC--------------------CHH--------------HHHHHHHHHHHHCCCHHHhcCCccc-----CCHHHHHHHHH
Confidence 10 000 0112356678999998877777654 99999999999
Q ss_pred HHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 156 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 156 a~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|+||+.+|++++|||||+|||+.++..+++.|+++.+ .|+|+|+++|++ +++ ..+|++++|++|++++.|+.+++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNL-EEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999875 588999976654 566 569999999999999999988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=298.86 Aligned_cols=201 Identities=24% Similarity=0.347 Sum_probs=158.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--------cccceEEeeccccccCCCCCHHHHHHHHh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--------VPQKTSAYISQNDVHVGEMTVKETLDFSA 72 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--------~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~ 72 (1293)
+++|+||||||||||+++|+|.++|+...+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 111 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA 111 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhh
Confidence 4799999999999999999999987523469999999876431 11346899999999899999999998754
Q ss_pred hccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchh
Q 000773 73 RCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKR 152 (1293)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 152 (1293)
....+ .. ... ....+. +.+..++++++.+||++..|+.+++ ||||||||
T Consensus 112 ~~~~~--~~------~~~---~~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr 160 (262)
T PRK09984 112 LGSTP--FW------RTC---FSWFTR---------------EQKQRALQALTRVGMVHFAHQRVST-----LSGGQQQR 160 (262)
T ss_pred ccccc--ch------hhh---cccccH---------------HHHHHHHHHHHHcCCHHHHhCCccc-----cCHHHHHH
Confidence 21000 00 000 000000 0122356789999998877777654 99999999
Q ss_pred hHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhh
Q 000773 153 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRER 232 (1293)
Q Consensus 153 v~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~ 232 (1293)
|+|||||+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|+++|+ .+++.+.+|++++|++|++++.|++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~-~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ-VDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999976568899997655 457888999999999999999999876
Q ss_pred H
Q 000773 233 V 233 (1293)
Q Consensus 233 ~ 233 (1293)
+
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 4
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=292.49 Aligned_cols=185 Identities=23% Similarity=0.296 Sum_probs=151.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc--cccceEEeec-cccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYIS-QNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~-Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+.... ..++.++|++ |++.+++.+||+|++.+.....+.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~ 125 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDL 125 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999987 99999999865321 2345789997 556778889999999876543211
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
.. .+ ....++.+++.+||++..|+.+++ ||||||||++||+
T Consensus 126 ~~--------------------~~--------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~la~ 166 (236)
T cd03267 126 PP--------------------AR--------------FKKRLDELSELLDLEELLDTPVRQ-----LSLGQRMRAEIAA 166 (236)
T ss_pred CH--------------------HH--------------HHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHH
Confidence 00 00 011245678889998888887754 9999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.+.+|++++|++|++++.|
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~-~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY-MKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC-HHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999977667899987655 45788899999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=298.92 Aligned_cols=190 Identities=27% Similarity=0.416 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-----cccceEEeecccccc-CCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-----VPQKTSAYISQNDVH-VGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~-~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.. +...|+.||+.+....
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~ 105 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN 105 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence 47999999999999999999999987 99999999887421 123568999998752 3456899999876432
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+.. ..+ ....++.+++.+||.+..++.++ .||||||||++
T Consensus 106 ~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~ 146 (271)
T PRK13638 106 LGVP--------------------EAE--------------ITRRVDEALTLVDAQHFRHQPIQ-----CLSHGQKKRVA 146 (271)
T ss_pred cCCC--------------------HHH--------------HHHHHHHHHHHcCCHhHhcCCch-----hCCHHHHHHHH
Confidence 1100 000 01124567888999877777665 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.| ..+++.+.+|++++|++|++++.|+++++.
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH-~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSH-DIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999875 4789888754 556788899999999999999999987764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=290.85 Aligned_cols=181 Identities=21% Similarity=0.277 Sum_probs=148.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc------ccceEEeeccccccCCCCCHHHHHHHHhhc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV------PQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 47999999999999999999999987 999999998775421 245689999999888899999999886532
Q ss_pred cCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhH
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.+.. ..+ .+..++..++.+||.+..++.++ .||||||||++
T Consensus 107 ~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 147 (222)
T PRK10908 107 AGAS--------------------GDD--------------IRRRVSAALDKVGLLDKAKNFPI-----QLSGGEQQRVG 147 (222)
T ss_pred cCCC--------------------HHH--------------HHHHHHHHHHHcCChhhhhCCch-----hCCHHHHHHHH
Confidence 2100 000 01124567888999877776664 49999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEE
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIV 225 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~ 225 (1293)
||||++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.| ..+++...+|++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH-~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATH-DIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeC-CHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999865 4788888755 556788899999999999975
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=327.97 Aligned_cols=193 Identities=29% Similarity=0.404 Sum_probs=157.4
Q ss_pred ccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 000773 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVK 798 (1293)
Q Consensus 719 ~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~ 798 (1293)
++.+|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.+++. ..+||++|++.+++.+||.
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p--~~G~i~~~~~--------~~i~~v~Q~~~~~~~~tv~ 88 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE--FEGEARPAPG--------IKVGYLPQEPQLDPEKTVR 88 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEecCC--------CEEEEEecCCCCCCCCcHH
Confidence 46799999999999999999999999999999999998663 4799998752 3589999999999999999
Q ss_pred HHHHHHHH-hc------------CCCCCC--------------------HHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000773 799 ESLIYSAF-LR------------LAKEVS--------------------KEDKIIFVEEVMDLVELESLKDAIVGLPGVT 845 (1293)
Q Consensus 799 e~l~~~~~-~~------------~~~~~~--------------------~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 845 (1293)
||+.+... .+ ...... ..+...+++++++.+|+.. .++.++
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~----- 162 (556)
T PRK11819 89 ENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVT----- 162 (556)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchh-----
Confidence 99987421 00 000000 0011345778899999953 566554
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcE
Q 000773 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 846 ~lSgGerqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~ 925 (1293)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||+++ .+...+|++++|.+ |+
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~-~~~~~~d~i~~l~~-g~ 237 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRY-FLDNVAGWILELDR-GR 237 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcCeEEEEeC-CE
Confidence 79999999999999999999999999999999999999999999986 259999999975 56778999999985 77
Q ss_pred EE-EeCCC
Q 000773 926 VI-YSGPL 932 (1293)
Q Consensus 926 ~~-~~g~~ 932 (1293)
++ +.|+.
T Consensus 238 i~~~~g~~ 245 (556)
T PRK11819 238 GIPWEGNY 245 (556)
T ss_pred EEEecCCH
Confidence 65 77765
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=289.99 Aligned_cols=179 Identities=28% Similarity=0.435 Sum_probs=145.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccc-cCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDV-HVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.+||+||+.++....+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 47999999999999999999999987 999999998765322 2456899999974 3667899999987643211
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
.. ..+ .+..++++++.+||.+..++.++ .|||||||||+||
T Consensus 106 ~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la 146 (211)
T cd03225 106 LP--------------------EEE--------------IEERVEEALELVGLEGLRDRSPF-----TLSGGQKQRVAIA 146 (211)
T ss_pred CC--------------------HHH--------------HHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHH
Confidence 00 000 01234567889999877776665 4999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCe
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQ 223 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~ 223 (1293)
|||+.+|++++|||||+|||+.++..+.+.|++++++ ++|+|++.|+ ..++..+||++++|++|+
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~-~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 147 GVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHD-LDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCC-HHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999998764 8899887655 567888899999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=300.82 Aligned_cols=194 Identities=25% Similarity=0.342 Sum_probs=156.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccc-cCCCCCHHHHHHHHhhccC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDV-HVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++..||+||+.|.....+
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~ 114 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA 114 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC
Confidence 47999999999999999999999886212399999999875422 2456899999974 5677899999987643211
Q ss_pred CCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHH
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia 156 (1293)
. ... +.++.++.+++.+||++..++.+. .||||||||++||
T Consensus 115 ~--------------------~~~--------------~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~G~~qrv~la 155 (282)
T PRK13640 115 V--------------------PRP--------------EMIKIVRDVLADVGMLDYIDSEPA-----NLSGGQKQRVAIA 155 (282)
T ss_pred C--------------------CHH--------------HHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHH
Confidence 0 000 011235667899999887777664 5999999999999
Q ss_pred HHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 157 ~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++.|++ +++ ..||++++|++|++++.|+++++.+
T Consensus 156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999765688999987665 455 5799999999999999999887643
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=298.54 Aligned_cols=195 Identities=23% Similarity=0.351 Sum_probs=157.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+|++.++......
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~ 111 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQP 111 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccc
Confidence 47999999999999999999999987 899999998765422 234689999999888889999999875211000
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
... .... ..+..++.+++.+||.+..++.+. .||||||||++|||
T Consensus 112 --~~~-------------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lar 156 (265)
T PRK10253 112 --LFT-------------RWRK---------------EDEEAVTKAMQATGITHLADQSVD-----TLSGGQRQRAWIAM 156 (265)
T ss_pred --ccc-------------CCCH---------------HHHHHHHHHHHHcCCHHHhcCCcc-----cCChHHHHHHHHHH
Confidence 000 0000 001234667889999877777665 49999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
|++.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.| ...++.+.+|++++|++|++++.|+++++.
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH-~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH-DLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999987655889988755 456788999999999999999999987764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=290.49 Aligned_cols=191 Identities=26% Similarity=0.336 Sum_probs=158.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc-ccceEEeeccccccCCCCCHHHHHHHHhhccCCCc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~- 103 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLP- 103 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcCCC-
Confidence 47999999999999999999999987 899999998875432 2457899999999888899999998865432110
Q ss_pred chhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHHH
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~al 159 (1293)
. . ..++.++.+++.+||.+..++.+. .||||||||++||||+
T Consensus 104 -~------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral 145 (232)
T cd03300 104 -K------------------A--------------EIKERVAEALDLVQLEGYANRKPS-----QLSGGQQQRVAIARAL 145 (232)
T ss_pred -H------------------H--------------HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHH
Confidence 0 0 001234567889999887777664 4999999999999999
Q ss_pred hcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 160 ~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|++ .++.+.+|++++|++|++++.|+.+++.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999998765588999976654 5778899999999999999999877654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=298.14 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=154.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCcc---ccceEEeeccccc--cCCCCCHHHHHHHHhhcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDV--HVGEMTVKETLDFSARCL 75 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~~~~~~yv~Q~~~--~~~~lTV~e~l~f~~~~~ 75 (1293)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++. +++.+||.|++.+.....
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 117 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN 117 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhc
Confidence 47999999999999999999999987 999999998775321 1346899999874 567889999998764421
Q ss_pred CCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccchhhH
Q 000773 76 GVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 154 (1293)
.... .. +....++.+++.+||. +..++.+. .|||||||||+
T Consensus 118 ~~~~-------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrv~ 159 (267)
T PRK15112 118 TDLE-------------------PE--------------QREKQIIETLRQVGLLPDHASYYPH-----MLAPGQKQRLG 159 (267)
T ss_pred cCCC-------------------HH--------------HHHHHHHHHHHHcCCChHHHhcCch-----hcCHHHHHHHH
Confidence 1000 00 0012346678999994 55565554 59999999999
Q ss_pred HHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||+||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++..+||++++|++|++++.|+++++.
T Consensus 160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH-LGMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC-HHHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999999999999999999977568898887555 56788899999999999999999887764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=290.57 Aligned_cols=185 Identities=26% Similarity=0.379 Sum_probs=146.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCccccceEEeeccccccC--CCCCHHHHHHHHhhccCCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHV--GEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~--~~lTV~e~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++. ..++.++|++|++.+. ..+||+||+.++......
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~- 100 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKG- 100 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCcHHHHHHhccccccc-
Confidence 47999999999999999999999987 999999998764 2345789999997653 347999999875431100
Q ss_pred cchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHHH
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~a 158 (1293)
.+.. ... +.+..++.+++.+||++..++.+++ ||||||||++||+|
T Consensus 101 -~~~~--------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~a 146 (213)
T cd03235 101 -LFRR--------------LSK--------------ADKAKVDEALERVGLSELADRQIGE-----LSGGQQQRVLLARA 146 (213)
T ss_pred -cccC--------------CCH--------------HHHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHH
Confidence 0000 000 0012356678999998777776654 99999999999999
Q ss_pred HhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEc
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228 (1293)
Q Consensus 159 l~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G 228 (1293)
|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|+ .+++.+.+|++++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~-~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHD-LGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999876 58898887554 56788899999999886 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=300.55 Aligned_cols=191 Identities=23% Similarity=0.347 Sum_probs=156.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc----cccceEEeeccccc-cCCCCCHHHHHHHHhhcc
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF----VPQKTSAYISQNDV-HVGEMTVKETLDFSARCL 75 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~----~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~~~~~ 75 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++. .+...||.|++.|+....
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 47999999999999999999999987 99999999887542 22467899999974 233469999998865422
Q ss_pred CCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHH
Q 000773 76 GVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTT 155 (1293)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~i 155 (1293)
+.. .. +.+..++.+++.+||++..++.+++ ||||||||++|
T Consensus 115 ~~~--------------------~~--------------~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~l 155 (280)
T PRK13633 115 GIP--------------------PE--------------EIRERVDESLKKVGMYEYRRHAPHL-----LSGGQKQRVAI 155 (280)
T ss_pred CCC--------------------HH--------------HHHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHH
Confidence 110 00 0112356789999999888887754 99999999999
Q ss_pred HHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHHH
Q 000773 156 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 156 a~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~~ 235 (1293)
|++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++.|++ +++.. +|++++|++|++++.|+++++..
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~-~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM-EEAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999999765689999986665 45654 99999999999999999888753
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=327.02 Aligned_cols=206 Identities=21% Similarity=0.272 Sum_probs=164.3
Q ss_pred eEEEeeeEEEEECCcccccccccccccccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEEEcCccC
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~~~g~~~ 773 (1293)
.++++|+++..+ +++.+|+|+|+++++||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 322 ~i~~~~v~f~y~------------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQ------------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP--QSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeC------------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEC
Confidence 588999988763 123589999999999999999999999999999999998763 589999999986
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIE 850 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgG 850 (1293)
.+ ..+++.++|++|++.+++. |++|| . ...+ .+.+++.++.+++.+..+...+.....+||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------KPAN----PALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHH-hhccc---c------CchH----HHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 53 3466789999999887754 67665 0 1111 22357788888887643321111113479999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEe
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 851 erqrv~ia~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~ 929 (1293)
||||++|||||+++|++|+||||||+||+.++..+.+.+.+..+ .|+|+|+++|++ +....+|++++|++ |+++..
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~-G~i~e~ 530 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRN-GQLSEL 530 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEEC-CEEEEe
Confidence 99999999999999999999999999999999999999876643 589999999996 46778999999986 777765
Q ss_pred C
Q 000773 930 G 930 (1293)
Q Consensus 930 g 930 (1293)
.
T Consensus 531 ~ 531 (547)
T PRK10522 531 T 531 (547)
T ss_pred c
Confidence 3
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=294.91 Aligned_cols=189 Identities=23% Similarity=0.303 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCC---------ccccceEEeeccccccCCCCCHHHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE---------FVPQKTSAYISQNDVHVGEMTVKETLDFS 71 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~---------~~~~~~~~yv~Q~~~~~~~lTV~e~l~f~ 71 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. ...++.++|++|++.+++.+||.||+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~ 106 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHH
Confidence 47999999999999999999999887 9999999987521 11245689999999999999999999753
Q ss_pred h-hccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccc
Q 000773 72 A-RCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQK 150 (1293)
Q Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 150 (1293)
. ...+.. ..+ ....++..++.+||++..++.++ .||||||
T Consensus 107 ~~~~~~~~--------------------~~~--------------~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 147 (242)
T PRK11124 107 PCRVLGLS--------------------KDQ--------------ALARAEKLLERLRLKPYADRFPL-----HLSGGQQ 147 (242)
T ss_pred HHHHcCCC--------------------HHH--------------HHHHHHHHHHHcCChhhhhCChh-----hCCHHHH
Confidence 2 111100 000 01234667889999877777665 4999999
Q ss_pred hhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcCh
Q 000773 151 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 151 qRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~ 230 (1293)
||++||||++.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++.|+ ..++.+.+|++++|++|++++.|++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~-~~~~~~~~d~i~~l~~g~i~~~~~~ 225 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHE-VEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhcCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999865 58898887655 4577788999999999999999987
Q ss_pred hhH
Q 000773 231 ERV 233 (1293)
Q Consensus 231 ~~~ 233 (1293)
+++
T Consensus 226 ~~~ 228 (242)
T PRK11124 226 SCF 228 (242)
T ss_pred HHh
Confidence 764
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=294.19 Aligned_cols=191 Identities=24% Similarity=0.252 Sum_probs=154.8
Q ss_pred ccccceeeeeecCcEEEEECCCCccHHHHHHHHhCCCCCCceeEEEE-----------EcCccCChh--c-c--cceEEE
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR-----------ISGFPKKQE--T-F--ARISGY 784 (1293)
Q Consensus 721 ~iL~~vs~~i~~Ge~~~i~G~nGaGKTTLl~~l~g~~~~~~~~G~i~-----------~~g~~~~~~--~-~--~~~~~~ 784 (1293)
.+|+|+| .+++||+++|+|||||||||||++|+|..++ .+|+|. ++|.+.... . . ...++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p--~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP--NLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5999999 5999999999999999999999999998763 479985 777765321 1 1 123789
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000773 785 CEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVAN 864 (1293)
Q Consensus 785 v~q~~~~~~~lTv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~lSgGerqrv~ia~aL~~~ 864 (1293)
++|+...++. ++.+++.+.. + ..+....+.++++.+|+.+..++.+. .||||||||++||++|+.+
T Consensus 92 ~~~~~~~~~~-~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 92 KPQYVDLIPK-AVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNID-----QLSGGELQRVAIAAALARD 157 (255)
T ss_pred ecchhccCch-HHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHhC
Confidence 9999888774 8888876532 1 12223457899999999877766544 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHhHhheeecCcEEEEeCC
Q 000773 865 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931 (1293)
Q Consensus 865 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~G~~~~~g~ 931 (1293)
|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|++++|. |++.+.|-
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~ 221 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGV 221 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCccee
Confidence 9999999999999999999999999999877999999999975 4556799999994 55665553
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=298.13 Aligned_cols=195 Identities=22% Similarity=0.344 Sum_probs=156.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc---cccceEEeeccccccCCCCCHHHHHHHHhhccCC
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF---VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||.||+.++.....
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~- 114 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH- 114 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCccccc-
Confidence 47999999999999999999999887 89999999876432 123568999999888888999999987532100
Q ss_pred CcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCccccCcccCCCcccccccccchhhHHHH
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ia~ 157 (1293)
... ...+. ..+..++.+++.+||++..++.+++ |||||||||+|||
T Consensus 115 -~~~-------------~~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~lar 160 (265)
T PRK10575 115 -GAL-------------GRFGA---------------ADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAM 160 (265)
T ss_pred -ccc-------------cCCCH---------------HHHHHHHHHHHHcCCHHHhcCCccc-----CCHHHHHHHHHHH
Confidence 000 00000 0012346678899998777777764 9999999999999
Q ss_pred HHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcChhhHH
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 158 al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~~~~~ 234 (1293)
||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++.+.+|++++|++|++++.|+.+++.
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~-~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD-INMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999876558898887555 56788999999999999999999887653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=301.72 Aligned_cols=191 Identities=21% Similarity=0.320 Sum_probs=152.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCC--------ccccceEEeeccccc-cCCCCCHHHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE--------FVPQKTSAYISQNDV-HVGEMTVKETLDFS 71 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~--------~~~~~~~~yv~Q~~~-~~~~lTV~e~l~f~ 71 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.. ...++.++|++|++. .+...||+||+.++
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 115 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence 47999999999999999999999987 8999999987642 112456899999973 22345999999886
Q ss_pred hhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccc
Q 000773 72 ARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQK 150 (1293)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1293)
....+.. ..+ ....++.+++.++|. +..++.++ .||||||
T Consensus 116 ~~~~~~~--------------------~~~--------------~~~~~~~ll~~~~L~~~~~~~~~~-----~LS~Gq~ 156 (289)
T PRK13645 116 PVNLGEN--------------------KQE--------------AYKKVPELLKLVQLPEDYVKRSPF-----ELSGGQK 156 (289)
T ss_pred HHHcCCC--------------------HHH--------------HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHH
Confidence 4321100 000 011245678888994 56666554 4999999
Q ss_pred hhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcCh
Q 000773 151 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 151 qRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~ 230 (1293)
||++|||||+.+|++++|||||+|||+.++..+++.|+++.++.++|+|++.|+ .+++.+.||++++|++|++++.|+.
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~-~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN-MDQVLRIADEVIVMHEGKVISIGSP 235 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999876568899987554 5678899999999999999999998
Q ss_pred hhHH
Q 000773 231 ERVL 234 (1293)
Q Consensus 231 ~~~~ 234 (1293)
+++.
T Consensus 236 ~~~~ 239 (289)
T PRK13645 236 FEIF 239 (289)
T ss_pred HHHh
Confidence 7764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=300.02 Aligned_cols=189 Identities=21% Similarity=0.330 Sum_probs=152.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeEEEEECCcccCCc-------cccceEEeecccc--ccCCCCCHHHHHHHH
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF-------VPQKTSAYISQND--VHVGEMTVKETLDFS 71 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~lTV~e~l~f~ 71 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++|++|++ .+++ .||+||+.+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~ 110 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFG 110 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHH
Confidence 47999999999999999999999987 99999999876532 1235689999986 3444 6999999876
Q ss_pred hhccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc-cccCcccCCCcccccccccc
Q 000773 72 ARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD-ICKDTIVGDEMNRGISGGQK 150 (1293)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqr 150 (1293)
....+.. ..+ .+..++.+++.+||. ...++.++ .||||||
T Consensus 111 ~~~~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~ 151 (280)
T PRK13649 111 PQNFGVS--------------------QEE--------------AEALAREKLALVGISESLFEKNPF-----ELSGGQM 151 (280)
T ss_pred HHHcCCC--------------------HHH--------------HHHHHHHHHHHcCCChhhhhCCcc-----cCCHHHH
Confidence 4321100 000 012345678889997 35566654 4999999
Q ss_pred hhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcCh
Q 000773 151 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 151 qRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~~ 230 (1293)
||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .++|||+++|+ .+++.+.+|++++|++|++++.|++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~-~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHL-MDDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecc-HHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999875 48899987655 4678889999999999999999998
Q ss_pred hhHH
Q 000773 231 ERVL 234 (1293)
Q Consensus 231 ~~~~ 234 (1293)
+++.
T Consensus 230 ~~~~ 233 (280)
T PRK13649 230 KDIF 233 (280)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=295.49 Aligned_cols=191 Identities=19% Similarity=0.294 Sum_probs=150.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC--ceeEEEEECCcccCCc-----cccceEEeeccccccCCCCCHHHHHHHHhh
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDL--KVRGEITYNGYRLNEF-----VPQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ~~~ilG~nGsGKSTLL~~l~G~~~~~~--~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~lTV~e~l~f~~~ 73 (1293)
+++|+||||||||||+++|+|..+|.. ..+|+|.++|.++... ..++.++|++|++.+++ +||+||+.++..
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~ 118 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPR 118 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHH
Confidence 479999999999999999999987410 1389999999876431 12456899999988887 899999988653
Q ss_pred ccCCCcchhhhhHhhHHhhhcCCCChhHHHHHHHHhhhccccchhhHHHHHHHhCCc----cccCcccCCCccccccccc
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLD----ICKDTIVGDEMNRGISGGQ 149 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGGq 149 (1293)
..+.. ..+ .+..++++++.+|+. +..++.+ ..|||||
T Consensus 119 ~~~~~--------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~ 159 (258)
T PRK14268 119 IHGAN--------------------KKD--------------LDGVVENALRSAALWDETSDRLKSPA-----LSLSGGQ 159 (258)
T ss_pred HcCCC--------------------HHH--------------HHHHHHHHHHHcCCCcchhhhhcCCh-----hhCCHHH
Confidence 22110 000 011245577888873 3345544 4599999
Q ss_pred chhhHHHHHHhcCCcEeEeeCCCccccHHHHHHHHHHHHHHHhhCCCEEEEEecCCChhHHHhccceEEecCCeEEEEcC
Q 000773 150 KKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229 (1293)
Q Consensus 150 rqRv~ia~al~~~p~vlllDEPtsgLD~~~~~~i~~~l~~l~~~~~~tii~~~~~~~~~~~~~~D~i~~L~~G~i~~~G~ 229 (1293)
||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++.|+ .+++.+.||++++|++|++++.|+
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~-~~~~~~~~d~i~~l~~G~i~~~~~ 236 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHN-MQQAARISDYTGFFLMGELIEFGQ 236 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECC-HHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999853 6888887554 567888999999999999999999
Q ss_pred hhhHH
Q 000773 230 RERVL 234 (1293)
Q Consensus 230 ~~~~~ 234 (1293)
++++.
T Consensus 237 ~~~~~ 241 (258)
T PRK14268 237 TRQIF 241 (258)
T ss_pred HHHHh
Confidence 88763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1293 | ||||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 6e-10 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 6e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-09 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-09 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 7e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 7e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-07 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 5e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-07 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-07 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 6e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 8e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 8e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-06 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 5e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-06 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 3e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 4e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 5e-05 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 6e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 8e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-04 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-04 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-04 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-04 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 8e-04 |
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1293 | |||
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 8e-27 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-11 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-23 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-10 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-22 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-12 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-22 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 2e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-22 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-09 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-18 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 8e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-07 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 9e-06 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 9e-16 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-04 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-17 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-16 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-11 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-07 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-14 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-08 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-06 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-07 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 8e-14 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-06 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-13 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 4e-13 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-05 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 7e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-09 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 8e-09 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 9e-09 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 9e-09 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 7e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 6e-04 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 7e-08 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 4e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 6e-07 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 9e-07 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-06 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 6e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 8e-06 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-05 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 4e-05 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 4e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 8e-05 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-04 |
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 8e-27
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 28/215 (13%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFA 779
L ++ G + A++G +G GK+TL+D+L G R G IE
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VY 65
Query: 780 RISGYCEQNDIHSPQVTVKESLIY--SAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDA 837
+ G+ Q +V + ++ S + + D + + +D + L L
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLTHLAKR 124
Query: 838 IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 896
T LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 125 EF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQN 179
Query: 897 RTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
TVV T HQP+ + ++ LLL + G
Sbjct: 180 MTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 37/241 (15%), Positives = 80/241 (33%), Gaps = 64/241 (26%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+ +LG GK+TLL L G +G+I ++ ++ Q
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY----------QSIGFVPQFFSSPF 79
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELAR-REKDAGIFPEAEIDLFMKATAMEGVESSLI 119
+V + + +G R ++ A+ + D + +A
Sbjct: 80 AYSVLDIV-----LMG---RSTHINTFAKPKSHDYQVAMQA------------------- 112
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI----VGPTKTLFMDEISTGL 175
L L L +SGGQ++ + +I K + +DE ++ L
Sbjct: 113 ----LDYLNLTHLAKREFTS-----LSGGQRQLI----LIARAIASECKLILLDEPTSAL 159
Query: 176 DSSTTYQIVKCLQQIVHVTDATILMSL--LQPAPETFDLFDDIILLSEGQIVYQGPRERV 233
D + ++ L + + T++ + + + +LL++ + G +
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV---VAIANKTLLLNKQNFKF-GETRNI 215
Query: 234 L 234
L
Sbjct: 216 L 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 16/166 (9%)
Query: 743 GAGKTTLMDVLAG--RKTGGYIEGDIRISGF-PKKQETFARIS-GYCEQNDIHSPQVTVK 798
GAGKTT + +++ + + G + + G ++ R Y + +
Sbjct: 51 GAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGI 106
Query: 799 ESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIA 858
E L + A + E+ + E ++ L V S ++L IA
Sbjct: 107 EYLRFVAGFYASSSSEIEEMV---ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIA 158
Query: 859 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 904
L+ NP + +DEPTSGLD A V + ++ G T++ + H
Sbjct: 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 47/237 (19%), Positives = 77/237 (32%), Gaps = 66/237 (27%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE----------FVPQKTSAYIS 53
L+GP +GKTT L ++ + G +T G + E ++P++ AY
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY-- 100
Query: 54 QNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEG 113
M E L F A + E+
Sbjct: 101 ------RNMQGIEYLRFVAGFYASSSS-----EIEEM----------------------- 126
Query: 114 VESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 173
+ +I GL V S G +++ ++ + +DE ++
Sbjct: 127 ------VERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTS 175
Query: 174 GLDSSTTYQIVKCLQQIVHVTDATILMS--LLQPAPETFDLFDDIILLSEGQIVYQG 228
GLD ++ K L+Q TIL+S + L D I L+ G IV G
Sbjct: 176 GLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEF---LCDRIALIHNGTIVETG 228
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 1e-22
Identities = 49/239 (20%), Positives = 101/239 (42%), Gaps = 31/239 (12%)
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR--KTGGYIEGDI 766
++ + G + +L +++ G L G++GAGKTTL+++L T G +
Sbjct: 23 QLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTV 78
Query: 767 RISGFPKKQETF------ARISGYCEQNDIH---SPQVTVKESLIYSAF---LRLAKEVS 814
+ G + + I G+ + V + ++ S + + +++
Sbjct: 79 NLFGKMPGKVGYSAETVRQHI-GFVSH-SLLEKFQEGERVID-VVISGAFKSIGVYQDID 135
Query: 815 KEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874
E + +++ LV + + +G LS +++R+ IA L+ P ++ +DEP
Sbjct: 136 DEIRNE-AHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPA 189
Query: 875 SGLDARAAAIVMRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+GLD A ++ + + ++ H +I F ++LLLK GQ I G
Sbjct: 190 AGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 8e-12
Identities = 48/251 (19%), Positives = 82/251 (32%), Gaps = 71/251 (28%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE-------------FVPQKTSA 50
L G +GKTTLL L G + G + FV
Sbjct: 52 LYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108
Query: 51 YISQNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATA 110
+ V + + S +G Y+ + + R +A
Sbjct: 109 KFQEG------ERVIDVV-ISGAFKSIG-VYQDIDDEIRN----------------EAHQ 144
Query: 111 MEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI----VGPTKTL 166
+ LK++G+ +G +S G+K+RV MI +G + L
Sbjct: 145 L------------LKLVGMSAKAQQYIGY-----LSTGEKQRV----MIARALMGQPQVL 183
Query: 167 FMDEISTGLDSSTTYQIVKCLQQIVH-VTDATILMSL--LQPAPETFDLFDDIILLSEGQ 223
+DE + GLD ++ L + ++ ++ F I+LL +GQ
Sbjct: 184 ILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITA---NFSKILLLKDGQ 240
Query: 224 IVYQGPRERVL 234
+ QG E +L
Sbjct: 241 SIQQGAVEDIL 251
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 38/194 (19%), Positives = 81/194 (41%), Gaps = 25/194 (12%)
Query: 737 ALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 794
G +G GKTTL+ ++ + +G+I +G P + +I + + I +
Sbjct: 39 NFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KVKGKI-FFLPEEIIVPRK 92
Query: 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKR 854
++V++ L A L K +++I + ++ VE+ LK + L G +R
Sbjct: 93 ISVEDYLKAVASLYGVKV--NKNEI---MDALESVEVLDLKKKLGELSQ--G----TIRR 141
Query: 855 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEA 913
+ +A L+ N I +D+P +D + V++++ + + G ++ +
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-----ELSY 196
Query: 914 FDELLLLKRGGQVI 927
D L + I
Sbjct: 197 CDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 2e-14
Identities = 37/231 (16%), Positives = 74/231 (32%), Gaps = 64/231 (27%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNE------FVPQKTSAYISQNDV 57
GP GKTTLL ++ L +GEI YNG + + F+P++
Sbjct: 40 FHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGKIFFLPEEIIVP------ 90
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
+++V++ L A GV + +
Sbjct: 91 --RKISVEDYLKAVASLYGVKVNKNEIMDA------------------------------ 118
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
L+ + + K + +S G +RV ++ + +D+ +D
Sbjct: 119 ------LESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQG 228
+ ++++K + +I+ I+ S E D L +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISS-----REELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 36/239 (15%)
Query: 706 MPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGD 765
M M+ Q VAE L ++ R G + L+G +GAGK+TL+ +AG +G +G
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGS 55
Query: 766 IRISGFPKKQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFV 822
I+ +G P + A Y Q V L K + +
Sbjct: 56 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-------DKTRTEL-L 107
Query: 823 EEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIA-------VELVANPSIIFMDEPTS 875
+V + L+ LS + +R+ +A + ++ +DEP +
Sbjct: 108 NDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN 162
Query: 876 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGP 931
LD + + + + G +V + H D+ LLK GG+++ SG
Sbjct: 163 SLDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 49/254 (19%), Positives = 78/254 (30%), Gaps = 80/254 (31%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQNDV 57
+ L+GP +GK+TLL +AG +G I + G L + AY+SQ
Sbjct: 28 ILHLVGPNGAGKSTLLARMAG----MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQT 83
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARR-EKDAGIFPEAEIDLFMKATAMEGVES 116
V L L + + + + A A++
Sbjct: 84 PPFATPVWHYL-----------------TLHQHDKTRTELLNDV-----AGALALDDKLG 121
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV--------TTGEMIVGPTKTLFM 168
L SGG+ +RV T + + L +
Sbjct: 122 RSTN--QL---------------------SGGEWQRVRLAAVVLQITPQANPAG-QLLLL 157
Query: 169 DEISTGLDSSTTYQIVKCLQQIVHVTDA--TILMSLLQPAPETFDL------FDDIILLS 220
DE LD + Q + + ++ I+MS DL LL
Sbjct: 158 DEPMNSLDVA--QQS-ALDKILSALSQQGLAIVMSS-------HDLNHTLRHAHRAWLLK 207
Query: 221 EGQIVYQGPRERVL 234
G+++ G RE VL
Sbjct: 208 GGKMLASGRREEVL 221
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 41/233 (17%), Positives = 84/233 (36%), Gaps = 35/233 (15%)
Query: 732 PGVLAALMGVSGAGKTTLMDVLAG-RKTGGYIE-GDIRISGFPKKQETFARISGYCEQN- 788
G ++G +G+GKTTL+ ++G G I + + R S +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI----RYSTNLPEAY 84
Query: 789 DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-ESLKDAIVGLPGVTGL 847
+I VTV + + K + ++ E++ ++L E + + L
Sbjct: 85 EIG---VTVNDIV---YLYEELKGLDRDL----FLEMLKALKLGEEILRRKLYK-----L 129
Query: 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 907
S Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 130 SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH--- 183
Query: 908 IDIFEAF---DELLLLKRGGQVIYSGPLGR--NSHKVIEYYEAIPGVPKIKEK 955
++ + G ++ + S V V I +K
Sbjct: 184 -ELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMDK 235
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 42/243 (17%), Positives = 77/243 (31%), Gaps = 73/243 (30%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQN-DVHVGEM 62
+LGP SGKTTLL A++G L G I NG + + Y + + + +
Sbjct: 35 ILGPNGSGKTTLLRAISGL----LPYSGNIFINGMEVRKIRNYI--RYSTNLPEAYEIGV 88
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV + + G+ + +E
Sbjct: 89 TVNDIVYLYEELKGLD----------------------------RDLFLE---------- 110
Query: 123 TLKILGLDICKDTIVGDEM-NRGI---SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
LK L L +E+ R + S GQ V T + + + +DE +D++
Sbjct: 111 MLKALKLG--------EEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162
Query: 179 TTYQIVKCLQQ----IVHVT-DATILMSLLQPAPETFDLFDDIILLSEGQIVYQ-GPRER 232
+ I + +++ + VT + + + G +
Sbjct: 163 RRHVISRYIKEYGKEGILVTHE----LD------MLNLYKEYKAYFLVGNRLQGPISVSE 212
Query: 233 VLE 235
+LE
Sbjct: 213 LLE 215
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 5e-18
Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 29/183 (15%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETF 778
+LN F + +MG +G GKTTL+ +LAG + G + +S P+K
Sbjct: 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK---- 421
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
I+ TV++ L + ++ + F +V+ + ++ + D
Sbjct: 422 --IA--------PKFPGTVRQ-LFFK---KIRGQFLNPQ---FQTDVVKPLRIDDIIDQE 464
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 897
V LS + +R+ I + L I +DEP++ LD+ I + +R + +
Sbjct: 465 VQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK 519
Query: 898 TVV 900
T
Sbjct: 520 TAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-14
Identities = 37/185 (20%), Positives = 71/185 (38%), Gaps = 25/185 (13%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEG---DIRISGFPKKQETFARISGYC 785
RPG + L+G +G GK+T + +LAG + G + I + + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 786 EQND--IHSPQVTVKESLIYSAFLRLAKE---VSKEDKIIFVEEVMDLVELESLKDAIVG 840
E + I PQ ++ E + E V+ + +++LE++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR--- 217
Query: 841 LPGVTGLSIE-----QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
IE + +R I + V + DEP+S LD + + +R+ +
Sbjct: 218 -------DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 896 GRTVV 900
+ V+
Sbjct: 271 TKYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 6e-07
Identities = 40/200 (20%), Positives = 61/200 (30%), Gaps = 62/200 (31%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG---YRLNEFVPQKTSAYISQNDVHVG 60
++G +GKTTL+ LAG L D G+ + PQK + V
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPD---EGQDIPKLNVSMK-----PQKIA-PKFPGTVR-- 431
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
LF K + + T
Sbjct: 432 ------------------------------------------QLFFKKIRGQFLNPQFQT 449
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
D +K L +D D V +SGG+ +RV + P +DE S LDS
Sbjct: 450 D-VVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQR 503
Query: 181 YQIVKCLQQIVHVTDATILM 200
K +++ + T +
Sbjct: 504 IICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 42/245 (17%), Positives = 74/245 (30%), Gaps = 69/245 (28%)
Query: 2 TLLLGPPSSGKTTLLLALAGKL-----NRDLKVRGEITYNGYRLNEFVPQKTSAYISQND 56
L+G GK+T L LAGK D + +R +E + + + +
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSE-LQNYFTKMLEDDI 164
Query: 57 --------VHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKA 108
V +K + L + + ++ R
Sbjct: 165 KAIIKPQYVDNIPRAIKGPVQKVGELLKL-RMEKSPEDVKR------------------- 204
Query: 109 TAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGI---SGGQKKRVTTGEMIVGPTKT 165
+KIL L+ + + R I SGG+ +R G V
Sbjct: 205 --------------YIKILQLE--------NVLKRDIEKLSGGELQRFAIGMSCVQEADV 242
Query: 166 LFMDEISTGLDSSTTYQIVKCLQQIVHVTDATIL----MSLLQPAPETFDLFDDIILLSE 221
DE S+ LD + ++ ++ T I +S+L L D + ++
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLD------YLSDFVCIIYG 296
Query: 222 GQIVY 226
VY
Sbjct: 297 VPSVY 301
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 29/183 (15%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETF 778
L + G + ++G +G GKTT + +LAG T G IE D+ ++ K Q
Sbjct: 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ--- 354
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
I + TV E L + SK + + E++ + + L D
Sbjct: 355 -YIK--------ADYEGTVYELL-------SKIDASKLNSNFYKTELLKPLGIIDLYDRE 398
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 897
V LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +
Sbjct: 399 VN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453
Query: 898 TVV 900
T +
Sbjct: 454 TAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 9e-16
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 26/197 (13%)
Query: 714 GVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIRIS 769
GV L L V + G++ ++G +G GK+T + +LAG+ G D I
Sbjct: 32 GVNAFVLYRLPVV----KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIR 87
Query: 770 GFPKK--QETFARISGYCEQNDI---HSPQVTVKESLI-YSAFLRLAKEVSKEDKIIFVE 823
F Q F ++ +I PQ LI + ++ + + K D+ +E
Sbjct: 88 AFRGNELQNYFEKLKN----GEIRPVVKPQYV---DLIPKAVKGKVIELLKKADETGKLE 140
Query: 824 EVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
EV+ +ELE++ + + LS + +R+ IA L+ N + F DEP+S LD R
Sbjct: 141 EVVKALELENVLER-----EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRL 195
Query: 884 IVMRTVRNTVDTGRTVV 900
R +R + G++V+
Sbjct: 196 NAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 80/270 (29%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
++GP GKTT + LAG G+I ++ + PQ YI + E T
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA--YKPQ----YIKAD----YEGT 363
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
V YELLS++ + ++ + + E+
Sbjct: 364 V----------------YELLSKIDASKLNSNFY-KTEL--------------------- 385
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI 183
LK LG+ D V + +SGG+ +RV ++ +DE S LD +
Sbjct: 386 LKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 440
Query: 184 VKCLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
+ ++ ++ + T L + ++ + D +++ EG+ G +
Sbjct: 441 SRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EGEPGKYGRALPPM---- 489
Query: 239 SCGFCCPERKGTADFLQE--VTSRKDQEQY 266
R+G FL +T R+D +
Sbjct: 490 ------GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 44/254 (17%), Positives = 78/254 (30%), Gaps = 92/254 (36%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDL---KVRGEITYNGYRLNE--------------FV 44
++GP +GK+T + LAG+L +L + +R NE V
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 45 PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDL 104
+ Y+ V G ELL + K
Sbjct: 110 VK--PQYVDLIPKAV-----------------KGKVIELLKKADETGK------------ 138
Query: 105 FMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGI---SGGQKKRVTTGEMI-- 159
+ +K L L+ + + R I SGG+ +RV I
Sbjct: 139 ---------------LEEVVKALELE--------NVLEREIQHLSGGELQRV----AIAA 171
Query: 160 --VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATIL----MSLLQPAPETFDLF 213
+ F DE S+ LD + ++++ + ++ +++L L
Sbjct: 172 ALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLD------YLS 225
Query: 214 DDIILLSEGQIVYQ 227
D I ++ VY
Sbjct: 226 DIIHVVYGEPGVYG 239
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 29/183 (15%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETF 778
L R G + ++G +G GKTT + +LAG T G +E D+ ++ K Q
Sbjct: 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ--- 424
Query: 779 ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
I + TV E L + SK + + E++ + + L D
Sbjct: 425 -YIK--------AEYEGTVYELL-------SKIDSSKLNSNFYKTELLKPLGIIDLYDRN 468
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 897
V LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +
Sbjct: 469 VE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523
Query: 898 TVV 900
T +
Sbjct: 524 TAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-16
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIRISGFPKK--Q 775
+ + G++ ++G +G GKTT + +LAG+ D I F Q
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLI-YSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
F R+ E + PQ L+ + ++ + + K D++ EEV+ +ELE++
Sbjct: 166 NYFERLKN-GEIRPVVKPQYV---DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENV 221
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
D + LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 895 TGRTVV 900
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 80/270 (29%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
++GP GKTT + LAG G++ ++ + PQ YI E T
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTVA--YKPQ----YIKAEY----EGT 433
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
V YELLS++ + ++ + + E+
Sbjct: 434 V----------------YELLSKIDSSKLNSNFY-KTEL--------------------- 455
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI 183
LK LG+ D V D +SGG+ +RV ++ +DE S LD +
Sbjct: 456 LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV 510
Query: 184 VKCLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
+ ++ ++ + T L + ++ + D +I+ EG+ G R L
Sbjct: 511 SRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLIVF-EGEPGRHG---RALPPM- 559
Query: 239 SCGFCCPERKGTADFLQE--VTSRKDQEQY 266
R+G FL +T R+D +
Sbjct: 560 ------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 47/204 (23%)
Query: 3 LLLGPPSSGKTTLLLALAGKLNRDL---KVRGEITYNGYRLNEFVPQKTSAYISQNDVHV 59
++GP +GKTT + LAG+L +L + +R NE Y +
Sbjct: 121 GIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE-----LQNYFERLKNGE 175
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
VK +LL + E+ ++ V+
Sbjct: 176 IRPVVKPQ------------YVDLLPKAV-------KGKVREL--------LKKVDEVGK 208
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGI---SGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
+ +K L L+ + ++R + SGG+ +RV ++ F DE S+ LD
Sbjct: 209 FEEVVKELELE--------NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
Query: 177 SSTTYQIVKCLQQIVHVTDATILM 200
++ + ++++ + +L+
Sbjct: 261 IRQRLKVARVIRRLAN-EGKAVLV 283
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 9e-17
Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 24/184 (13%)
Query: 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFAR 780
L + G + ++G +G GKTT +L G T EG + +
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------Q 330
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840
I Y Q + TV++ +L A + + F EEV + L L ++ V
Sbjct: 331 ILSYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN 384
Query: 841 -LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
L G G + ++L IA L + +D+P+S LD IV + ++ + V
Sbjct: 385 DLSG--G----ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Query: 900 VCTI 903
I
Sbjct: 439 TFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 4e-14
Identities = 38/185 (20%), Positives = 75/185 (40%), Gaps = 23/185 (12%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGY------ 784
+ + ++G +G GKTT++ +LAG + + + + K E R G
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYNYF 78
Query: 785 -----CEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
E +H Q S + + ++K D+ +EV +L+ + +L +
Sbjct: 79 KELYSNELKIVHKIQYVEYASKF--LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDA 136
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 899
+ LS +RL +A L+ + D+P+S LD R + + +R + + V
Sbjct: 137 NI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190
Query: 900 VCTIH 904
+ H
Sbjct: 191 IVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 52/270 (19%), Positives = 94/270 (34%), Gaps = 78/270 (28%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
+LGP GKTT L G++ D G +T L+ + PQ I N + T
Sbjct: 299 ILGPNGIGKTTFARILVGEITAD---EGSVTPEKQILS-YKPQ----RIFPN----YDGT 346
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
V++ L+ +++ + T E+
Sbjct: 347 VQQYLENASK-DALSTSSWFFEEV------------------------------------ 369
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI 183
K L L ++ V D +SGG+ +++ + +D+ S+ LD Y +
Sbjct: 370 TKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424
Query: 184 VKCLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
K ++++ A +S+ + D II+ +G+ G +
Sbjct: 425 AKAIKRVTRERKAVTFIIDHDLSIHD------YIADRIIVF-KGEPEKAGLATSPVTL-- 475
Query: 239 SCGFCCPERKGTADFLQE--VTSRKDQEQY 266
+ G +FL+E VT R+D E
Sbjct: 476 --------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 35/248 (14%), Positives = 83/248 (33%), Gaps = 73/248 (29%)
Query: 3 LLLGPPSSGKTTLLLALAGKL-----NRDLKVRGEITYNGYRLNE--FVPQKTSAYISQN 55
+LG GKTT+L LAG++ + + KV + +R E ++ + N
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE----LYSN 84
Query: 56 DVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVE 115
++ + ++ E S+ + + + ++
Sbjct: 85 ELKI-VHKIQYV--------------EYASKFLKGTVNEI---------------LTKID 114
Query: 116 SSLITDYTLKILGLDICKDTIVGDEMNRGI---SGGQKKRVTTGEMI----VGPTKTLFM 168
D ++L + + N+ SGG +R+ ++ +
Sbjct: 115 ERGKKDEVKELLNMT--------NLWNKDANILSGGGLQRL----LVAASLLREADVYIF 162
Query: 169 DEISTGLDSSTTYQIVKCLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQ 223
D+ S+ LD + K +++++ + ++ + +L L D I ++
Sbjct: 163 DQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVLD------YLTDLIHIIYGES 214
Query: 224 IVYQGPRE 231
VY +
Sbjct: 215 SVYGRVSK 222
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 5e-16
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
L V+ G + G +G+GK+TL+ ++AG T GD+ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 781 ISGYCEQNDIHSP--QV---TVKESLIYSAF----LRLAKEVSKEDKIIFVEEVMDLVEL 831
G Q P Q V + + AF ++ V++ M+ V L
Sbjct: 79 NIGIAFQY----PEDQFFAERVFDEV---AFAVKNFYPDRDPVPL-----VKKAMEFVGL 126
Query: 832 --ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 889
+S KD LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 127 DFDSFKDR-----VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 890 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
G+TV+ H + D +++L++ G+ ++ G
Sbjct: 182 EKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 45/247 (18%), Positives = 88/247 (35%), Gaps = 66/247 (26%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQN-DVHVGEM 62
+ G SGK+TLL +AG + G++ Y+G R + ++ Q +
Sbjct: 38 VAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE 94
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
V + + F+ + + K A
Sbjct: 95 RVFDEVAFAVKNFYPDR------DPVPLVKKA---------------------------- 120
Query: 123 TLKILGLDICKDTIVGDEMNR---GISGGQKKRVTTGEMIVG-----PTKTLFMDEISTG 174
++ +GLD +R +SGG+K+RV I P L +DE G
Sbjct: 121 -MEFVGLDF------DSFKDRVPFFLSGGEKRRVA----IASVIVHEP-DILILDEPLVG 168
Query: 175 LDSSTTYQIVKCLQQIVHVTDATILM---SLLQPAPETFDLFDDIILLSEGQIVYQGPRE 231
LD +++ +++ T+++ + + D +++L +G+ V+ G R
Sbjct: 169 LDREGKTDLLRIVEKW-KTLGKTVILISHDI----ETVINHVDRVVVLEKGKKVFDGTRM 223
Query: 232 RVLEFFE 238
LE ++
Sbjct: 224 EFLEKYD 230
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 31/222 (13%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFP--KKQETF 778
L + + G + A++G +G GK+TL G + + G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 779 ARIS---GYCEQNDIHSP--QV---TVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE 830
++ G Q+ P Q+ +V + + +F + ++ +++ V+ +
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDV---SFGAVNMKLPEDEIRKRVDNALKRTG 132
Query: 831 LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
+E LKD LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 133 IEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187
Query: 891 N-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ G T++ H + D + ++K G+VI G
Sbjct: 188 EMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 7e-10
Identities = 53/270 (19%), Positives = 96/270 (35%), Gaps = 68/270 (25%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG--- 60
+LG GK+TL G L G I ++ ++ +K + + +G
Sbjct: 39 ILGGNGVGKSTLFQNFNGIL---KPSSGRILFDNKPIDY--SRKGIMKLRE---SIGIVF 90
Query: 61 --------EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAME 112
+V + + F A + + E+ +R +A
Sbjct: 91 QDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------------------ 127
Query: 113 GVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEIS 172
LK G++ KD +S GQKKRV ++V K L +DE +
Sbjct: 128 -----------LKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 173 TGLDSSTTYQIVKCLQQIVHVTDATILMS---LLQPAPETFDLFDDIILLSEGQIVYQGP 229
GLD +I+K L ++ TI+++ + D++ ++ EG+++ QG
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDI----DIVPLYCDNVFVMKEGRVILQGN 227
Query: 230 RERVL---EFFESCGFCCPERKGTADFLQE 256
+ V E P + L+E
Sbjct: 228 PKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 1e-14
Identities = 105/720 (14%), Positives = 196/720 (27%), Gaps = 215/720 (29%)
Query: 175 LDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFD--DI---ILLSE--GQIVYQ 227
+D T + + I+ V + FD D D+ IL E I+
Sbjct: 7 MDFETGEHQYQY-KDILSV--------FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 228 GPR-ERVLEFFESCGFCCPERKGTADFLQEVTSRKDQEQY-WADRSKPYRYISVTEFANR 285
L F + + + F++EV + Y + +
Sbjct: 58 KDAVSGTLRLFWT--LLSKQEEMVQKFVEEV----LRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 286 FKSFHIGMHLENQLSVPFDKSQGHRAAIVFKKYTVPKMELLKACWDKEWLL-IKRNSFVY 344
+ ++ +NQ VF KY V +++ ++ LL ++ V
Sbjct: 112 YIEQRDRLYNDNQ---------------VFAKYNVSRLQPYLKL--RQALLELRPAKNVL 154
Query: 345 V------SKTVQLIIVAIIASTVFLRTRMH---------TRNENDGALFIGALLFSMIIN 389
+ KT + + + ++ +M N + L + L I
Sbjct: 155 IDGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 390 MFNGFAELAMTIQRFPVFYKQ--RDLMFHP-----------VWTF-TLPTFLLRIPI--- 432
+ ++ + I+ + R L+ V F L I
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 433 ----SIFESVVWVVVTYYTI-----GFAP-EASRFFKNFLLVFLIQQMAAAMFRLIAGVC 482
+ + + T+ ++ P E +L L V
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--------RPQDLPREVL 323
Query: 483 RTMIIANTGGALTLLVVFLLGGFIVPKGQIPNWWEWGYWVSPLAYGYNAFAVNEMYAPRW 542
T + ++ I W+ W
Sbjct: 324 TTN----------PRRLSIIAESIRDG---LATWD--NW--------------------- 347
Query: 543 MNRLASDNVTKLGAAVLNNFDIPAHRDWYWIGAAALSGFIVLFNVLFTFTLMYLNPPGK- 601
+ D +T + + LN + +R + LS F PP
Sbjct: 348 -KHVNCDKLTTIIESSLNVLEPAEYRKMFD----RLSVF----------------PPSAH 386
Query: 602 -PQAVLS------EEAAAEMVAEQEESKEEPRLVRPQSKKDSYPRSL------SSSDANN 648
P +LS ++ +V + LV Q K+ + S+ N
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQPKESTI--SIPSIYLELKVKLEN 441
Query: 649 SREMAIRRMCSRSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPP 708
+ R + N + +DD P + D Y+Y +
Sbjct: 442 EYALH-RSIVDHYNIPKTFDSDD------------------LIPPYL--DQ-YFYSHIGH 479
Query: 709 EMKEQGVAEDKLRLLNEVTSAFRPGVLAA---LMGVSGAGKTTLMDVLAG-RKTGGYI-E 763
+K E ++ L V FR L + ++++ L + YI +
Sbjct: 480 HLKNIEHPE-RMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 764 GDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVE 823
D + F E+N I S Y+ LR+A + ED+ IF E
Sbjct: 537 NDPKYERLVNAILDFLP---KIEENLICSK---------YTDLLRIA--LMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 4e-11
Identities = 72/508 (14%), Positives = 149/508 (29%), Gaps = 130/508 (25%)
Query: 3 LLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEM 62
L+ G SGKT +A + KV+ ++ + + LN + + +
Sbjct: 154 LIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLN----------LKNCNSPETVL 199
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITD- 121
+ + L + + S+ + K +AE+ +K + L+
Sbjct: 200 EMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK--SKPYENCLLVLLN 252
Query: 122 -YTLKIL-GLDI-CK------DTIVGDEMNRGISGGQKKRVTTGEMIVGPTKT------- 165
K ++ CK V D +S ++ + T
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTD----FLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 166 -----------------------LFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSL 202
+ + I GL + ++ V C + I SL
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-----TTIIESSL 363
Query: 203 --LQPAPETFDLFDDIILLSEG-QIVYQGPRERVLEFFESCGFCCPERKGTADFLQEVTS 259
L+PA E +FD + + I P +L + + + ++
Sbjct: 364 NVLEPA-EYRKMFDRLSVFPPSAHI----P-TILLSLI----WFDVIKSDVMVVVNKLHK 413
Query: 260 RKDQEQYWADRSKPYRYISVTEFANRFKSFHIGMHLENQLSVPFDKSQGHRAAIVFKKYT 319
E+ K S ++LE ++ + ++ HR+ + Y
Sbjct: 414 YSLVEKQP----KESTI-----------SIP-SIYLELKVKLE-NEYALHRSIV--DHYN 454
Query: 320 VPKMELLKACWDKEWLLIKRN-SFVYVS---KTVQLIIVAIIASTVFLRTRMHTRNENDG 375
+PK D + ++ K ++ + VFL R
Sbjct: 455 IPK----TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--------- 501
Query: 376 ALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQRDLMFHPVWT---FTLPTFLLRIPI 432
F+ + +N + T+Q+ FYK P + + FL +I
Sbjct: 502 --FLEQKIRHDSTA-WNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 433 SIFES----VVWVVVTYYTIGFAPEASR 456
++ S ++ + + EA +
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 81/597 (13%), Positives = 173/597 (28%), Gaps = 120/597 (20%)
Query: 602 PQAVLSEEAAAEMVAEQEESKEEPRL--VRPQSKKDSYPRSLSSSDANNSREMAIRRMCS 659
P+++LS+E ++ ++ RL +++ + + N + +
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP---I 98
Query: 660 RSNPNELSRNDDSNLEAAKGVAPKRGMVLPFTPLAMSFDSVYYYVDMPPEMKEQGVAEDK 719
++ + S +E F Y V K
Sbjct: 99 KTEQRQPSMMTRMYIEQ---RDRLYNDNQVFAK---------YNVSRLQPYL-------K 139
Query: 720 LR--LLNEVTSAFRPGVLAALMGVSGAGKTTL-MDVLAGRKTGGYIEGDI---------R 767
LR LL RP + GV G+GKT + +DV K ++ I
Sbjct: 140 LRQALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 768 ISGFPKKQETFARI--SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEV 825
+ + + ++D HS + ++ I + RL K E+ ++ + V
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 826 MDLVELESLKDAIVG---LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL-DARA 881
+ + + L +T R + A + I +D + L
Sbjct: 254 QNAKAWNAFN---LSCKIL--LT-----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 882 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLLKRGGQVIYSGPLGRNSHKV 939
+++++ + V T + + I D L V +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-----KLTTI 358
Query: 940 IE-------------YYE--AI--PGVPKIKEKYNPATWMLEVSSAAAEVRLGMDFADAY 982
IE ++ ++ P I W + S +V M +
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKS---DV---MVVVNKL 411
Query: 983 KSSSLCQRNKALVNELSTPPRGAKDLYFATQYSQSTWGQF-KSCLWKQWWTYWRSPDYNL 1041
SL ++ + P +Y + +S + YN+
Sbjct: 412 HKYSLVEKQPK--ESTISIP----SIYLELKVKLENEYALHRSIVDH----------YNI 455
Query: 1042 VR--CCFTLACALMIGTVFWKVG--TKREDTTDLTMIIGAMY-------AAILFVGISNC 1090
+ L + + +G K + + + ++ I +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 1091 STVQPVVAVERTVFYRE---RAAGMYSALPYAIAQVIVEIPYVLFQTTYYTLIVYAM 1144
++ + +++ FY+ Y L AI + +I L + Y L+ A+
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 6e-07
Identities = 67/525 (12%), Positives = 136/525 (25%), Gaps = 157/525 (29%)
Query: 47 KTSAYISQ-----NDVHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAE 101
T YI Q ND V F+ + +R + +L R+ + P
Sbjct: 108 MTRMYIEQRDRLYNDNQV----------FAKYNV---SRLQPYLKL--RQALLELRPAKN 152
Query: 102 IDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGI---SGGQKKRVTTGEM 158
+ + + G + + LD+C V +M+ I + E
Sbjct: 153 VLID----GVLGSGKT--------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ET 197
Query: 159 IVGPTKTLFMD---EISTGLDSSTTYQI------------------VKCLQQIV--HVTD 195
++ + L ++ D S+ ++ CL +V +V +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQN 255
Query: 196 ATILMSLLQPAPETFDL-------------FDDIILLSEGQIVYQGPRERVLEFFESCGF 242
A F+L D + + I L E
Sbjct: 256 AKAW--------NAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSL 306
Query: 243 CC-----------PERKGTADFLQEVTSRKDQEQYWADRSKPYRYISVTEFANRFKSFHI 291
E T + + ++ +++++ + +S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSL- 363
Query: 292 GMHLENQLSVPFDKSQGHRAAIVFKKYT-VPKMELLKACWDKEWLLIKRNSFVYVSKTVQ 350
N L P + + VF +P LL W + V
Sbjct: 364 -----NVLE-PAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDV-----------IKSDVM 405
Query: 351 LIIVAIIASTVFLRTRMHTRNENDGALFIGALLFSMIINMFNGFAELAMTIQRFPVFYKQ 410
+++ + + + + + I ++ + + + N +A + Y
Sbjct: 406 VVV------NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH----YNI 455
Query: 411 RDLMFHPVWTFTLPTFLLRIPISIFESVVWVVVTYYTIGF---APEASRFFKNFLLVFLI 467
P + + Y IG E F +VFL
Sbjct: 456 PKT--FDSDDLIPP----------YLDQYF----YSHIGHHLKNIEHPERMTLFRMVFL- 498
Query: 468 QQMAAAMFRLIAG-VCRTMIIANTGGAL--TLLVVFLLGGFIVPK 509
FR + + N G++ TL + +I
Sbjct: 499 ------DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 8e-14
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 39/204 (19%)
Query: 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQ- 775
+ L+ V+ + G + ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 776 ------ETFARISGYCEQNDIHS-PQVTVKE-----------SLIYSAFLRLAKEVSKED 817
TF Q ++TV E S + S F + KE+
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP--KEE 128
Query: 818 KII-FVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
+++ ++++ ++L L D G LS Q K + I L+ NP +I MDEP +G
Sbjct: 129 EMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 877 LDARAAAIVMRTVRNTVDTGRTVV 900
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 55/245 (22%), Positives = 88/245 (35%), Gaps = 56/245 (22%)
Query: 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQK-TSAYIS---QNDV 57
TL++GP SGK+TL+ + G L D G + + + P + I Q
Sbjct: 36 TLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQT-P 91
Query: 58 HV-GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116
EMTV E L C G L + + E E+ A +
Sbjct: 92 QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPK-------EEEM----VEKAFK---- 136
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE----MIVGPTKTLFMDEIS 172
L+ L L D G+ +SGGQ K V E ++ P K + MDE
Sbjct: 137 ------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRALMTNP-KMIVMDEPI 181
Query: 173 TGLDSSTTYQIVKCLQQIVHVTDATIL-----MSLLQPAPETFDLFDDIILLSEGQIVYQ 227
G+ + I + ++ T L + ++ + D + ++ GQI+ +
Sbjct: 182 AGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIV------LNYIDHLYVMFNGQIIAE 234
Query: 228 G-PRE 231
G E
Sbjct: 235 GRGEE 239
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 4e-13
Identities = 44/198 (22%), Positives = 84/198 (42%), Gaps = 27/198 (13%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG-YIEGDIRISGFPKKQETFA 779
L ++ + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 780 R---ISGYCEQ--NDIHSPQVTVKES----LIYSAFLRLAKEVSKEDKIIFVEEVMDLVE 830
R + G+ Q I P++T E+ ++ K++ E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 831 LESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
L D + P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 130 LG---DKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 891 NTVDTGRTVVCTIHQPSI 908
+ G ++V H+ +
Sbjct: 185 KINEGGTSIVMVTHEREL 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 26/212 (12%)
Query: 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGG-YIEGDIR 767
K + E+ + L V + G ++MG SG+GK+T+++++ + T G +I+
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 768 ISGFPKKQETFAR---ISGYCEQ--NDIHSPQVTVKES----LIYSAFLRLAKEVSKEDK 818
+ + T R I G+ Q N I P +T E+ LI+ ++ E ++
Sbjct: 69 TNDLDDDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKR- 124
Query: 819 IIFVEEVMDLVELESLKDAIVG-LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGL 877
E + + ELE + P LS Q++R+ IA L NP II D+PT L
Sbjct: 125 ---ALECLKMAELE---ERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 878 DARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 908
D++ +M+ ++ + G+TVV H ++
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-11
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 54/228 (23%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIRISGFPKK 774
L +V+ PG AL+G SGAGK+T++ D+ +G I+G DI
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR---IDGQDIS----QVT 122
Query: 775 QETFARISGYCEQ-----NDIHSPQVTVKESLIYSAFLRL-AKEVSKEDKIIFVEEVMDL 828
Q + G Q ND T+ +++ Y R+ A +EV
Sbjct: 123 QASLRSHIGVVPQDTVLFND------TIADNIRYG---RVTAGN----------DEVEAA 163
Query: 829 VELESLKDAIVGLP----------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
+ + DAI+ P G+ LS +++R+ IA ++ P II +DE TS LD
Sbjct: 164 AQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALD 222
Query: 879 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
+ ++ V RT + H+ S + A D++L++K G V
Sbjct: 223 TSNERAIQASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGCIV 267
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 7e-05
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 35/117 (29%)
Query: 134 DTIVGDEMNRG--ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ-- 189
T VG+ RG +SGG+K+RV I+ + +DE ++ LD+S I L +
Sbjct: 181 RTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC 237
Query: 190 -------IVH----VTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+ H V +A D I+++ +G IV +G E +L
Sbjct: 238 ANRTTIVVAHRLSTVVNA-----------------DQILVIKDGCIVERGRHEALLS 277
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 43/222 (19%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIRISGFPKKQETFARI 781
L + G AL+G +G+GK+T+ +L R Y EGDI+I G +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYN---- 87
Query: 782 SGYCEQNDIHS-----PQVTV--KESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
+N I S PQ T+ E++ Y+ + K + + EEV+ + L
Sbjct: 88 -----RNSIRSIIGIVPQDTILFNETIKYN--ILYGKLDATD------EEVIKATKSAQL 134
Query: 835 KDAIVGLP----------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
D I LP G+ LS +R+R+ IA L+ +P I+ DE TS LD++ +
Sbjct: 135 YDFIEALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193
Query: 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
+ V + + RT++ H+ S I A + ++LL +G V
Sbjct: 194 FQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNKGKIV 232
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 35/117 (29%)
Query: 134 DTIVGDEMNRGI--SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ-- 189
DTIVG+ +G+ SGG+++R+ ++ K + DE ++ LDS T Y K ++
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202
Query: 190 -------IVH----VTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
I H ++ A + IILL++G+IV +G + +L+
Sbjct: 203 KNRTLIIIAHRLSTISSA-----------------ESIILLNKGKIVEKGTHKDLLK 242
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.0 bits (150), Expect = 1e-09
Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 30/164 (18%)
Query: 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIRISGFPKKQETFAR 780
LLN+ + + G +G GK+TLM +A + G+ + + R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT------------ 497
Query: 781 ISGYCEQN-DIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
Y E + D +V + + E + E + D + D ++
Sbjct: 498 --VYVEHDIDGTHSDTSVLDFV-------------FESGVGTKEAIKDKLIEFGFTDEMI 542
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
+P ++ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 543 AMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 59.0 bits (144), Expect = 2e-09
Identities = 56/240 (23%), Positives = 96/240 (40%), Gaps = 66/240 (27%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIR- 767
D +L+ + + + G + ++G SG+GK+TL G+ I+G D+
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL---IDGHDLAL 75
Query: 768 ---------ISGFPKKQET--FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKE 816
+ Q+ R ++ +++ A
Sbjct: 76 ADPNWLRRQVGVVL--QDNVLLNR---------------SIIDNISL------ANPGMSV 112
Query: 817 DKII----------FVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPS 866
+K+I F+ E L + IVG G LS QR+R+ IA LV NP
Sbjct: 113 EKVIYAAKLAGAHDFISE------LREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPK 165
Query: 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
I+ DE TS LD + ++MR + GRTV+ H+ S + A D ++++++G V
Sbjct: 166 ILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-VKNA-DRIIVMEKGKIV 222
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 19/148 (12%)
Query: 737 ALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFARISGYCEQNDIHSP 793
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 794 QVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852
++V ++ A+ LR V + ++ V E+ + + + L D P LS +R
Sbjct: 84 HLSVYRNI---AYGLR---NVERVERDRRVREMAEKLGIAHLLDR---KPA--RLSGGER 132
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDAR 880
+R+ +A LV P ++ +DEP S +D +
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 8e-09
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 57/228 (25%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISGFPKKQ 775
L +++ +P + A G SG GK+T+ AG I I G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 776 ETFA----RISGYCEQ-----NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVM 826
+ +I G+ Q T++E+L Y L + + E ++
Sbjct: 69 ISLENWRSQI-GFVSQDSAIMAG------TIRENLTYG----LEGDYTDE-------DLW 110
Query: 827 DLVELESLKDAIVGLP----------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
+++L + + +P GV +S QR+RL IA + NP I+ +DE T+
Sbjct: 111 QVLDLAFARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 877 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924
LD+ + ++V + + +++ GRT + H+ S I +A D++ +++G
Sbjct: 170 LDSESESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKGQ 214
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 20/148 (13%)
Query: 737 ALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFARISGYCEQNDIHSP 793
++G +GAGKT ++++AG G I ++ ++ + QN P
Sbjct: 30 VILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK----HDIAFVYQNYSLFP 85
Query: 794 QVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852
+ VK++L F +R+ K + + V + +++E L D P LS ++
Sbjct: 86 HMNVKKNL---EFGMRMKK-IKDPKR---VLDTARDLKIEHLLDR---NPL--TLSGGEQ 133
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDAR 880
+R+ +A LV NP I+ +DEP S LD R
Sbjct: 134 QRVALARALVTNPKILLLDEPLSALDPR 161
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 17/162 (10%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
+ V+ R G + L+G SG+GKTT++ ++AG R T G + G R++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAI 838
R G QN +TV +++ +F LR + V K++ V E++ + LES +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNV---SFGLREKR-VPKDEMDARVRELLRFMRLESYANR- 141
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
P LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 142 --FP--HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 28/155 (18%)
Query: 738 LMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGF------PKKQET---FARISGYC 785
++G SGAGKTT M ++AG + G + D ++ P+ ++ F
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVF------- 88
Query: 786 EQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVT 845
Q P +T E++ + L K +SKE+ VEEV ++++ + + P
Sbjct: 89 -QTWALYPNLTAFENIAFP--LTNMK-MSKEEIRKRVEEVAKILDIHHVLNH---FPR-- 139
Query: 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
LN V+ G + ++G SGAGK+TL+ + R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 780 RIS-GYCEQ--NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
R G Q N + S TV ++ L L K++ V E++ LV L D
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LELDN-TPKDEVKRRVTELLSLVGLGDKHD 158
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
+ P + LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 159 S---YP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 19/128 (14%)
Query: 146 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATIL-----M 200
SGGQK+RV + K L D+ ++ LD +TT I++ L+ I TIL M
Sbjct: 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224
Query: 201 SLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGFCCPERKGTADFLQEVTSR 260
+++ + D + ++S G+++ Q V E F P+ F+Q
Sbjct: 225 DVVK------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQSTLHL 270
Query: 261 KDQEQYWA 268
E Y
Sbjct: 271 DIPEDYQE 278
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 43/220 (19%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
L ++ G L A+ G +GAGKT+L+ ++ G + EG I+ SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLR---LAKEVSKE--DKIIFVEEVMDLVE-LESL 834
IS +C Q S I ++ + + +I + L E +
Sbjct: 101 IS-FCSQ-----------NSWIMPGTIKENIIGVSYDEYRYRSVI---KACQLEEDISKF 145
Query: 835 KDA---IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 891
+ ++G G+T LS QR R+++A + + + +D P LD + +
Sbjct: 146 AEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204
Query: 892 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ +T + + ++ + D++L+L G + G
Sbjct: 205 KLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 241
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 7e-08
Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 12/180 (6%)
Query: 757 KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKE 816
K + + KK SG E+ + + +
Sbjct: 155 KVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFA 214
Query: 817 DKIIFVEEVMDLVELESLKDAIVGLPG----VTGLSIEQRKRLTIAVEL------VANPS 866
+ + + E+ V G +T LS +R L +A L S
Sbjct: 215 EFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEIS 274
Query: 867 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926
++ +DEPT LD ++ + + V+ H ++ +A D ++ +
Sbjct: 275 LLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADHVIRISLENGS 332
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 6e-04
Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 25/224 (11%)
Query: 24 NRDLKVRGEITYNGYRLNEFVPQKTSAYI-----SQNDVHVGEMTVKETLDFSARCLGVG 78
+ I YN + ++ Q I ++ V + + + + +
Sbjct: 118 AISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELK 177
Query: 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVG 138
EL + K + A E Y+ ++ + K +
Sbjct: 178 GGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFV 237
Query: 139 DEMNRGI-----SGGQKKRVT------TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL 187
+ SGG++ + + G L +DE + LD +++ +
Sbjct: 238 VWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIM 297
Query: 188 QQIVHVTDATILMSLLQPAPETFDLFDDIILL------SEGQIV 225
++ + IL+S E D D +I + S+ ++V
Sbjct: 298 ERYLKKIPQVILVSHD---EELKDAADHVIRISLENGSSKVEVV 338
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 45/207 (21%), Positives = 78/207 (37%), Gaps = 54/207 (26%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
L ++ + PG L+G +G+GK+TL+ EG+I+I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----------- 82
Query: 783 GYCEQNDIHS-------------PQVTVKESLIYSAFLR--LAKEVSKEDKIIFVEEVMD 827
S PQ + I+S R L + D+ I+ +V D
Sbjct: 83 ------SWDSITLEQWRKAFGVIPQ----KVFIFSGTFRKNLDPNAAHSDQEIW--KVAD 130
Query: 828 LVELESLKDAIVGLP---------GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLD 878
V L + I P G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 131 EVGL---RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
Query: 879 ARAAAIVMRTVRNTVDTGRTVVCTIHQ 905
I+ RT++ TV+ +
Sbjct: 188 PVTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 17/164 (10%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFA 779
LN+++ + PG + ++G SG GKTTL+ LAG + G I I
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 780 RISGYCEQNDIHS--PQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
R GY Q P +TV ++ A+ L K + +E +++L + L
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNI---AYGLGNGK-GRTAQERQRIEAMLELTGISELAG 133
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
P LS Q++R +A L +P +I +DEP S LD +
Sbjct: 134 R---YPH--ELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 60/236 (25%), Positives = 95/236 (40%), Gaps = 63/236 (26%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISGFPKK------ 774
L + + G AL+G SG GK+T + ++ Y ++G + I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 775 ---------QET--FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVE 823
QE FA T+ E++ Y +ED + +
Sbjct: 462 LREIIGVVSQEPVLFAT---------------TIAENIRYG----------REDVTM--D 494
Query: 824 EVMDLVELESLKDAIVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPT 874
E+ V+ + D I+ LP G G LS Q++R+ IA LV NP I+ +DE T
Sbjct: 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
S LD + A+V + GRT + H+ S + A D + GG ++ G
Sbjct: 555 SALDTESEAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFD-GGVIVEQG 606
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 54/208 (25%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISGFPKKQ 775
L ++ + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 776 ETFARISGYCEQNDIHS--P---QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE 830
+ Q I S P ++ E++ Y ++ VS ++I+
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYG---DNSRVVS-YEEIV---------- 1142
Query: 831 LESLKDA-----IVGLP-------GVTG--LSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
+ K+A I LP G G LS Q++R+ IA LV P I+ +DE TS
Sbjct: 1143 -RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201
Query: 877 LDARAAAIVMRTVRNTVDTGRTVVCTIH 904
LD + +V + + GRT + H
Sbjct: 1202 LDTESEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 56/226 (24%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
L ++ G L A+ G +GAGKT+L+ ++ G + EG I+ SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD------------L 828
IS +C Q S I ++ + IIF D L
Sbjct: 71 IS-FCSQ-----------FSWIMPGTIK--------ENIIFGVS-YDEYRYRSVIKACQL 109
Query: 829 VE-LESLKDA---IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
E + + ++G G+T LS QR R+++A + + + +D P LD
Sbjct: 110 EEDISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
Query: 885 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ + + +T + + ++ + D++L+L G + G
Sbjct: 169 IFESCVCKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYG 211
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-07
Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 54/220 (24%)
Query: 696 SFDSVYYYVDMPPEMKEQGVAEDKLR------------------LLNEVTSAFRPGVLAA 737
+ +++ +D+ E +++ L+ V+ + G A
Sbjct: 314 ACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVA 373
Query: 738 LMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISGFPKKQETFA---RISGYCEQ----- 787
L+G SG+GK+T+ ++ T Y G I + G + R Q
Sbjct: 374 LVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429
Query: 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEE------VMDLVE-LESLKDAIVG 840
ND T+ ++ Y+A E ++E +E+ M+ +E + D ++G
Sbjct: 430 ND------TIANNIAYAAEG----EYTREQ----IEQAARQAHAMEFIENMPQGLDTVIG 475
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
G + LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 476 ENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 46/217 (21%), Positives = 74/217 (34%), Gaps = 71/217 (32%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIRISGFPKK- 774
L +T PG + AL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 775 --------------QET--FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDK 818
QE F R + +E++ Y L + + E
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYG----LTRTPTME-- 124
Query: 819 IIFVEEVMDLVELESLKDAIVGLP----------GVTGLSIEQRKRLTIAVELVANPSII 868
E+ + D I G P G LS QR+ + +A L+ P ++
Sbjct: 125 -----EITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLL 178
Query: 869 FMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 904
+D TS LDA V R + + RTV+
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 6e-07
Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 59/192 (30%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIRI 768
+++ +L ++ + G A +G+SG GK+TL+ DV +G+ I+G +I+
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL---IDGHNIK- 406
Query: 769 SGFPKK----------QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDK 818
F Q+ S TVKE+++ +
Sbjct: 407 -DFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG----------RPT- 441
Query: 819 IIFVEEVMDLVELESLKDAIVGLP----------GVTGLSIEQRKRLTIAVELVANPSII 868
EEV++ ++ + D I+ LP GV LS Q++RL+IA + NP I+
Sbjct: 442 -ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPIL 499
Query: 869 FMDEPTSGLDAR 880
+DE TS LD
Sbjct: 500 ILDEATSALDLE 511
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 9e-07
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 22/157 (14%)
Query: 738 LMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFARISGYCEQNDIHSPQ 794
L+G SG+GK+TL+ +AG + T G I + ++ P K + QN P
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF----QNWALYPH 89
Query: 795 VTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853
+TV +++ AF L L K +E+ V EV ++ ++ L + P LS Q++
Sbjct: 90 MTVYKNI---AFPLELRK-APREEIDKKVREVAKMLHIDKLLNR---YPW--QLSGGQQQ 140
Query: 854 RLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 888
R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 54/220 (24%)
Query: 696 SFDSVYYYVDMPPEMKEQGVAEDKLR------------------LLNEVTSAFRPGVLAA 737
+ +++ +D E E D+ L + G A
Sbjct: 314 ACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVA 373
Query: 738 LMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISGFPKKQETFA---RISGYCEQ----- 787
L+G SG+GK+T+ ++ T Y EG I + G ++ T A Q
Sbjct: 374 LVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLF 429
Query: 788 NDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEE------VMDLVE-LESLKDAIVG 840
ND TV ++ Y+ +E S+E +EE MD + +++ D I+G
Sbjct: 430 ND------TVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIG 475
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 880
GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 476 ENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 1e-06
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKK 774
+ + + G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 775 QETFARISGYCEQNDIHSPQ-------VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD 827
I+ P+ +TV E+L+ A+ R KE K D +E +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD----LEWIFS 124
Query: 828 LV-ELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
L L+ + G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 887 RTVRNTVDTGRTV 899
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 20/156 (12%)
Query: 738 LMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFARISGYCEQNDIHSPQ 794
L+G SG GKTT + ++AG T G I GD ++ P K + + Q+ P
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF----QSYAVWPH 97
Query: 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKR 854
+TV E++ + L++ K K++ V +L+++E L + P LS QR+R
Sbjct: 98 MTVYENIAFP--LKIKK-FPKDEIDKRVRWAAELLQIEELLNR---YPA--QLSGGQRQR 149
Query: 855 LTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 888
+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 6e-06
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 58/228 (25%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQETFAR 780
LN +T + G L A++G G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 781 ISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMD------------L 828
++ Y Q ++ I + LR + I+F + ++ L
Sbjct: 68 VA-YVPQ-----------QAWIQNDSLR--------ENILFGCQ-LEEPYYRSVIQACAL 106
Query: 829 VE-LESLKDA---IVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+ LE L +G GV LS Q++R+++A + +N I D+P S +DA
Sbjct: 107 LPDLEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 885 VMRTV--RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSG 930
+ V + +T + H + D ++++ GG++ G
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMS-GGKISEMG 210
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-06
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 20/156 (12%)
Query: 738 LMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFARISGYCEQNDIHSPQ 794
L+G SG GKTT + +LAG + T G I D+ ++ P K + QN P
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF----QNYALYPH 89
Query: 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKR 854
+TV E++ + LR + +SK++ V E+ + +++L D P LS Q++R
Sbjct: 90 MTVFENIAFP--LRARR-ISKDEVEKRVVEIARKLLIDNLLDR---KPT--QLSGGQQQR 141
Query: 855 LTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 888
+ +A LV P ++ DEP S LDA R MR
Sbjct: 142 VALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 32/165 (19%)
Query: 738 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIRISGFPKKQETFARISGYCE---------- 786
L+G SG GKTT + ++AG + G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 787 QNDIHSPQVTVKESLIYSAF-LRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVT 845
Q+ P +TV +++ AF L+L K V +++ V EV +L+ L L + P
Sbjct: 88 QSYALYPHMTVYDNI---AFPLKLRK-VPRQEIDQRVREVAELLGLTELLNR---KPR-- 138
Query: 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 888
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 731 RPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISG---FPKKQETFARISG-- 783
G + ALMG +GAGK+TL +LAG Y G+I + G + AR G
Sbjct: 27 PKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDERAR-KGLF 83
Query: 784 YCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKI---IFVEEVMDLVELESLKDAIVG 840
Q + P VT+ FLRLA + ++ F +V +EL ++ +
Sbjct: 84 LAFQYPVEVPGVTIAN------FLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS 137
Query: 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 889
G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 138 RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 912
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 913 AFDELLLL-----KRGGQVI 927
A D ++ + +V+
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 36/189 (19%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIRISG---F 771
EDK +L ++ PG + A+MG +G+GK+TL LAGR+ Y G + G
Sbjct: 31 EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 772 PKKQETFARISG--YCEQNDIHSPQVTVKESLIYSAFLRLA----------KEVSKEDKI 819
E A G Q + P V+ + FL+ A + + + D
Sbjct: 88 ALSPEDRAG-EGIFMAFQYPVEIPGVSNQF------FLQTALNAVRSYRGQETLDRFDFQ 140
Query: 820 IFVEEVMDLVELES--LKDAI-VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSG 876
+EE + L+++ L ++ VG G G ++KR I V P + +DE SG
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQMAVLEPELCILDESDSG 194
Query: 877 LDARAAAIV 885
LD A +V
Sbjct: 195 LDIDALKVV 203
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1293 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-12 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-14 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-20 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-26 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-15 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-13 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-16 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-23 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-13 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-12 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-12 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-15 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-16 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-20 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 5e-13 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-20 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-13 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-12 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-14 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-11 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-14 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-12 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-04 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 115 bits (289), Expect = 4e-29
Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 26/251 (10%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ 775
+ + L+ V+ + G + ++G +G+GK+TL++V+ G + G + + + +
Sbjct: 15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA 74
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLR---------LAKEVSKEDKIIF-VEEV 825
E + Q ++TV E+L+ K + KE++++ ++
Sbjct: 75 ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKI 134
Query: 826 MDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 885
++ ++L L D G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 135 LEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 189
Query: 886 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYEA 945
V G T + H+ + D L ++ GQ+I G E +
Sbjct: 190 FNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR-------GEEEIKN 240
Query: 946 IPGVPKIKEKY 956
+ PK+ E Y
Sbjct: 241 VLSDPKVVEIY 251
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 83.1 bits (205), Expect = 5e-18
Identities = 50/236 (21%), Positives = 84/236 (35%), Gaps = 35/236 (14%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP----QKTSAYISQNDVHV 59
++GP SGK+TL+ + G L D G + + + P Q +
Sbjct: 35 IIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91
Query: 60 GEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLI 119
EMTV E L C G L + +++ M A +
Sbjct: 92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE-----------MVEKAFK------- 133
Query: 120 TDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 179
L+ L L D G+ +SGGQ K V G ++ K + MDE G+
Sbjct: 134 ---ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 185
Query: 180 TYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+ I + ++ T L+ + D + ++ GQI+ +G E ++
Sbjct: 186 AHDIFNHVLEL-KAKGITFLII-EHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 111 bits (280), Expect = 4e-28
Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 22/234 (9%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ 775
+ + + G + L+G +GAGKTT + +AG R G I + +
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDL-VELESL 834
+ P++TV E+L+ A+ R KE K D +E + L L+
Sbjct: 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD----LEWIFSLFPRLKER 132
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 894
+ G LS +++ L I L++ P ++ MDEP+ GL + V ++
Sbjct: 133 LKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 895 TGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGPLG--RNSHKVIEYY 943
G T++ + A +L+ GQ++ G ++ V + Y
Sbjct: 188 EGTTILLVEQ----NALGALKVAHYGYVLET-GQIVLEGKASELLDNEMVRKAY 236
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 66.5 bits (162), Expect = 2e-12
Identities = 49/233 (21%), Positives = 82/233 (35%), Gaps = 42/233 (18%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRD-LKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEM 62
L+G +GKTT L A+AG + K+ + + + A + + E+
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV E L A + E +FP
Sbjct: 97 TVYENLMMGAYNRKDKEGIK-----RDLEWIFSLFP------------------------ 127
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
L + G +SGG+++ + G ++ K L MDE S GL +
Sbjct: 128 -----RLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+ + +Q+I + TIL+ Q A + +L GQIV +G +L+
Sbjct: 178 VFEVIQKI-NQEGTTILLV-EQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (279), Expect = 4e-28
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 19/231 (8%)
Query: 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIR 767
K + E+ + L V + G ++MG SG+GK+T+++++ + T G + +I+
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 768 ISGFPKKQETFARIS--GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEV 825
+ + T R G+ Q P +T E++ + +S E++ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 826 MDLVEL-ESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884
+ + EL E + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 129 LKMAELEERFANHKPN-----QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183
Query: 885 VMRTVRNTVD-TGRTVVCTIHQPSIDIFEA--FDELLLLKRGGQVIYSGPL 932
+M+ ++ + G+TVV H DI A + ++ L + G+V L
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTH----DINVARFGERIIYL-KDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 72.2 bits (177), Expect = 2e-14
Identities = 34/233 (14%), Positives = 80/233 (34%), Gaps = 47/233 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-------AYISQND 56
++GP SGK+T+L + GE+ + + N+ + + ++ Q
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 57 VHVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVES 116
+ +T E ++ ++ ++ E+ ++ M +E
Sbjct: 93 NLIPLLTALENVEL-------PLIFKYRGAMSGEERRKRA---------LECLKMAELEE 136
Query: 117 SLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 176
+SGGQ++RV + + D+ + LD
Sbjct: 137 RFANHKP-------------------NQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 177 SSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229
S T +I++ L+++ T+++ + II L +G++ +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 106 bits (267), Expect = 2e-26
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 24/221 (10%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ 775
+N++ + G L+G SG GKTT + ++AG T EG I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EGRIYFGDRDVTY 72
Query: 776 -ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
R Q+ P +TV E++ AF K+ K++ V +L+++E L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENI---AFPLKIKKFPKDEIDKRVRWAAELLQIEEL 129
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 893
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 894 DTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGP 931
T + H D EA D + ++ R GQ++ G
Sbjct: 185 KLKVTTIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 87.9 bits (218), Expect = 7e-20
Identities = 49/252 (19%), Positives = 86/252 (34%), Gaps = 52/252 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ-KTSAYISQNDVHVGEM 62
LLGP GKTT L +AG G I + + P+ + + + Q+ M
Sbjct: 37 LLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
TV E + F + E+ +R + A
Sbjct: 94 TVYENIAFPLKIKKFPKD-----EIDKRVRWA---------------------------- 120
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
++L ++ + +SGGQ++RV IV L MDE + LD+
Sbjct: 121 -AELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
+ ++++ T + E + D I +++ GQ++ G V +
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEV--------Y 225
Query: 243 CCPERKGTADFL 254
P A F+
Sbjct: 226 LRPNSVFVATFI 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 106 bits (266), Expect = 8e-26
Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 20/209 (9%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
L + G + A+ G +G+GKT+L+ ++ G EG I+ SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 783 GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842
+C Q P T+KE++I+ E + + + D+ + + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFG---VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 902
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 903 IHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ D++L+L + G + G
Sbjct: 215 TSKME--HLRKADKILILHQ-GSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 75.3 bits (185), Expect = 3e-15
Identities = 40/235 (17%), Positives = 78/235 (33%), Gaps = 52/235 (22%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
M + G SGKT+LL+ + G+L G I ++G R++ F Q +
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG-RVS-FCSQ---------FSWIM 109
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
T+KE + F + + ++
Sbjct: 110 PGTIKENIIFGVS--------------YDEYRYKSVVKACQLQQD--------------- 140
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
I +T++G+ +SGGQ+ R++ + +D LD T
Sbjct: 141 -----ITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
Q+ + + + T ++ + E D I++L +G + G +
Sbjct: 195 EQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (260), Expect = 3e-25
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 28/231 (12%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKK 774
+L V+ R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 13 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDK 72
Query: 775 QETFARIS-----------GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVE 823
Q+ +TV E+++ +SK D
Sbjct: 73 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERAL 130
Query: 824 EVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883
+ + V ++ + A P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 131 KYLAKVGID--ERAQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 186
Query: 884 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGP 931
V+R ++ + G+T+V H ++ A ++ L G++ G
Sbjct: 187 EVLRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 68.3 bits (167), Expect = 5e-13
Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 36/253 (14%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
++G SGK+T L + G I NG +N + ++
Sbjct: 33 IIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVAD--------- 80
Query: 64 VKETLDFSARCLG-VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
K L L V + L S + E ++ K A E L
Sbjct: 81 -KNQLRLLRTRLTMVFQHFNLWSHMTVLENVM--EAPIQVLGLSKHDARERALKYL---- 133
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
+G+D + +SGGQ++RV+ + L DE ++ LD +
Sbjct: 134 --AKVGID----ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
+++ +QQ+ T+++ + + +I L +G+I +G E + F +
Sbjct: 188 VLRIMQQLAE-EGKTMVVVTHEMG-FARHVSSHVIFLHQGKIEEEGDPE---QVFGN--- 239
Query: 243 CCPERKGTADFLQ 255
P+ FL+
Sbjct: 240 --PQSPRLQQFLK 250
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 100 bits (251), Expect = 4e-24
Identities = 53/226 (23%), Positives = 96/226 (42%), Gaps = 15/226 (6%)
Query: 711 KEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIR 767
K ++ LN V+ G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 768 ISGFPKKQETFARIS-GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVM 826
++ + + T AR G Q+ TV ++ L L K++ V E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PLELDN-TPKDEVKRRVTELL 125
Query: 827 DLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 886
LV L D+ LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 887 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+++ G T++ H+ + + D + ++ G++I
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 76.1 bits (187), Expect = 9e-16
Identities = 46/238 (19%), Positives = 83/238 (34%), Gaps = 49/238 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS------AYISQNDV 57
++G +GK+TL+ + G + +G L + + I Q+
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 58 HVGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESS 117
+ TV + P+ E+ K E
Sbjct: 93 LLSSRTVFGNVALPLELDNT--------------------PKDEV----KRRVTE----- 123
Query: 118 LITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS 177
L ++GL D+ + +SGGQK+RV + K L DE ++ LD
Sbjct: 124 -----LLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 178 STTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+TT I++ L+ I TIL+ + + D + ++S G+++ Q V
Sbjct: 174 ATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 98.5 bits (245), Expect = 2e-23
Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ 775
K +L ++ G + L+G +GAGKTT + +++ + + G + + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 776 ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLK 835
++ Y + + E Y F+ S + VE ++ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIE---YLRFVAGFYASSSSEIEEMVERATEIAGLGEKI 127
Query: 836 DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 895
V S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 896 GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
G T++ + H ++ D + L+ G ++ +G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 70.0 bits (171), Expect = 1e-13
Identities = 52/257 (20%), Positives = 87/257 (33%), Gaps = 54/257 (21%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ--KTSAYISQNDVHVGE 61
L+GP +GKTT L ++ + G +T G + E + K +Y+ +
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89
Query: 62 MTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITD 121
M E L F A +EI+ + +
Sbjct: 90 MQGIEYLRFVAGFYAS--------------------SSSEIEE--------------MVE 115
Query: 122 YTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTY 181
+I GL V S G +++ ++ + +DE ++GLD
Sbjct: 116 RATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 182 QIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCG 241
++ K L+Q TIL+S E L D I L+ G IV G E + E
Sbjct: 171 EVRKILKQA-SQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKER----- 223
Query: 242 FCCPERKGTADFLQEVT 258
+ + + +EV
Sbjct: 224 ---YKAQNIEEVFEEVV 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 96.1 bits (239), Expect = 5e-23
Identities = 38/187 (20%), Positives = 80/187 (42%), Gaps = 16/187 (8%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS 782
L +T G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 783 GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLP 842
+ + I +++V++ L A L K E + + ++ VE+ LK
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE-----IMDALESVEVLDLKKK----- 122
Query: 843 GVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 901
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 902 TIHQPSI 908
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 64.2 bits (156), Expect = 6e-12
Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 52/221 (23%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+ GP GKTTLL ++ L +GEI YNG + + + ++ + +
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPR 83
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
+++V++ L A GV + +
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDA--------------------------------- 110
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
L+ + + K + +S G +RV ++ + +D+ +D +
Sbjct: 111 ---LESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSE 221
++++K + +I+ I+ S E D L +
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-----EELSYCDVNENLHK 197
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 95.8 bits (238), Expect = 1e-22
Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 28/219 (12%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP---KKQETFA 779
L ++ R G + L+G +GAGK+TL+ +AG +G +G I+ +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
Y Q V L + E+ + +V + L+
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL--------LNDVAGALALDDKLGRST 123
Query: 840 GLPGVTGLSIEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 893 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
G +V + H + LLK GG+++ SG
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 65.0 bits (158), Expect = 5e-12
Identities = 47/239 (19%), Positives = 82/239 (34%), Gaps = 54/239 (22%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
L+GP +GK+TLL +AG + +G I + G L + K + +H ++
Sbjct: 30 LVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSATKLA-------LHRAYLS 78
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
++T F+ + L+ + + +
Sbjct: 79 QQQTPPFAT------PVWHYLTLHQHDKTRTELLNDV----------------------- 109
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPT-------KTLFMDEISTGLD 176
L LD +SGG+ +RV +++ T + L +DE LD
Sbjct: 110 AGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 164
Query: 177 SSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+ + K L + I+MS T LL G+++ G RE VL
Sbjct: 165 VAQQSALDKILSAL-CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 95.3 bits (237), Expect = 3e-22
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 14/213 (6%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFA 779
L + G AL+G SG+GK+T+ ++ EG I + G ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE-LESLKDAI 838
QN +++ + + + MD + +++ D I
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 839 VGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 898
+G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRT 203
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ H+ S E DE+++++ G ++ G
Sbjct: 204 SLVIAHRLS--TIEQADEIVVVED-GIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 75.3 bits (185), Expect = 2e-15
Identities = 46/235 (19%), Positives = 87/235 (37%), Gaps = 38/235 (16%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
L+G SGK+T+ + + D G I +G+ L E+ ++
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVAL------ 93
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
V L ++ E + +A M
Sbjct: 94 ----------------VSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD---- 133
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
I +D DTI+G E +SGGQ++R+ ++ + L +DE ++ LD+ +
Sbjct: 134 ----FINKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
I L ++ + T L+ + T + D+I+++ +G IV +G +L
Sbjct: 189 RAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.5 bits (230), Expect = 3e-21
Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 19/221 (8%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE 776
+++ +L ++ + G A +G+SG GK+TL++++ G I I G K
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDF 85
Query: 777 TFARISGYCE--QNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVE-LES 833
+ Q D TVKE++ L + + +++++ ++ + + + +
Sbjct: 86 LTGSLRNQIGLVQQDNILFSDTVKENI------LLGRPTATDEEVVEAAKMANAHDFIMN 139
Query: 834 LK---DAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 890
L D VG GV LS Q++RL+IA + NP I+ +DE TS LD + +I+ +
Sbjct: 140 LPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD 198
Query: 891 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
+ RT + H+ S D++++++ G ++ +G
Sbjct: 199 V-LSKDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 78.7 bits (194), Expect = 2e-16
Identities = 50/237 (21%), Positives = 84/237 (35%), Gaps = 43/237 (18%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYIS--QNDVH 58
+G GK+TL+ + + G+I +G+ + +F+ I Q D
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 102
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
+ TVKE + G E+ K A
Sbjct: 103 LFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF------------------- 136
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
I+ L DT VG E +SGGQK+R++ + + L +DE ++ LD
Sbjct: 137 -------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 179 TTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+ I + L + D T L+ + T D I+++ G IV G ++
Sbjct: 189 SESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 90.7 bits (225), Expect = 1e-20
Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 13/218 (5%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP---K 773
D +L+ + + + G + ++G SG+GK+TL ++ + + I G
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
R G Q D ++ +++ + ++V K + D +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
+ GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
GRTV+ H+ S + D +++++ G+++ G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 68.0 bits (166), Expect = 5e-13
Identities = 45/237 (18%), Positives = 89/237 (37%), Gaps = 43/237 (18%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYIS--QNDVH 58
+ ++G SGK+TL + + ++ +G+ L P + D
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPENG---QVLIDGHDLALADPNWLRRQVGVVLQDNV 87
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
+ ++ + + + + EK A F
Sbjct: 88 LLNRSIIDNISLA-------------NPGMSVEKVIYAAKLAGAHDF------------- 121
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
I L +TIVG++ +SGGQ++R+ +V K L DE ++ LD
Sbjct: 122 -------ISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYE 173
Query: 179 TTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
+ + I++ + +I T+++ + T D II++ +G+IV QG + +L
Sbjct: 174 SEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.8 bits (220), Expect = 6e-20
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 12/213 (5%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP---KKQETFA 779
L +T RPG + AL+G +G+GK+T+ +L G + + G P +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIV 839
R Q + +++E++ Y + E + + L D V
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQKPTME-EITAAAVKSGAHSFISGLPQGYDTEV 145
Query: 840 GLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 898
G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R+
Sbjct: 146 DEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 899 VVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
V+ S + E D +L L+ GG + G
Sbjct: 205 VLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.4 bits (193), Expect = 2e-16
Identities = 43/235 (18%), Positives = 86/235 (36%), Gaps = 36/235 (15%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+T L+GP SGK+T+ L G++ +G L ++ + ++
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAA------ 92
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
VG ++ + G+ + ++ A G
Sbjct: 93 ----------------VGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH----- 131
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
I GL DT V E +SGGQ++ V ++ L +D+ ++ LD+++
Sbjct: 132 ---SFISGLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235
Q+ + L + ++L+ + D I+ L G I G ++++E
Sbjct: 188 LQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 87.7 bits (217), Expect = 8e-20
Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 20/219 (9%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET 777
++ + ++ G +G SG GK+TL+ ++AG +T + + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 778 FARIS-GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKD 836
A G Q+ P ++V E++ + L KE V +V ++++L L D
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLD 125
Query: 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 895
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 896 GRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGP 931
GRT++ H D EA D++++L G+V G
Sbjct: 181 GRTMIYVTH----DQVEAMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 68.1 bits (166), Expect = 4e-13
Identities = 45/252 (17%), Positives = 85/252 (33%), Gaps = 52/252 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHVGEM 62
+GP GK+TLL +AG G++ R+N+ P + + Q+ +
Sbjct: 31 FVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
+V E + F + G + I + E +
Sbjct: 88 SVAENMSFGLKLAG--------------------AKKEVI----NQRVNQVAEVLQLAHL 123
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
D + +SGGQ++RV G +V +DE + LD++ Q
Sbjct: 124 ---------------LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
+ + ++ T++ E L D I++L G++ G + +
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYHY------ 221
Query: 243 CCPERKGTADFL 254
P + A F+
Sbjct: 222 --PADRFVAGFI 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 83.4 bits (206), Expect = 3e-18
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 22/223 (9%)
Query: 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQ 775
++ + E++ + G L+G SG GKTT + ++AG + G I ++ P+K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 776 ETFARIS---GYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELE 832
Q+ P +TV +++ + LR + + V EV +L+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 833 SLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 892
L + LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 893 V-DTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGQVIYSGP 931
G T + H D EA D + ++ R G + G
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 66.5 bits (162), Expect = 2e-12
Identities = 48/251 (19%), Positives = 84/251 (33%), Gaps = 44/251 (17%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMT 63
LLGP GKTT L +AG RG+I + + ++ D + +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVA---DPEKGIFVPPKDRDIAMVF 87
Query: 64 VKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYT 123
L L ++ R+E + E
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQE--------------IDQRVRE----------V 123
Query: 124 LKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQI 183
++LGL + + +SGGQ++RV G IV + MDE + LD+ ++
Sbjct: 124 AELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 184 VKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGFC 243
L+++ T + E + D I +++ G + G + V +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGSPDEVYDK------- 230
Query: 244 CPERKGTADFL 254
P A F+
Sbjct: 231 -PANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 82.6 bits (204), Expect = 5e-18
Identities = 48/218 (22%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 717 EDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPK 773
+D ++L +++ +P + A G SG GK+T+ +L + T G I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 774 KQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES 833
+ + G+ Q+ + +++ + + F ++ + +
Sbjct: 72 EN--WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ- 128
Query: 834 LKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 893
+ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + +
Sbjct: 129 -LNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-L 185
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
GRT + H+ S D++ +++ GQ+ SG
Sbjct: 186 MKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 73.0 bits (179), Expect = 1e-14
Identities = 48/244 (19%), Positives = 79/244 (32%), Gaps = 45/244 (18%)
Query: 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYIS--QNDVH 58
+ GP GK+T+ L GEIT +G ++ + + I D
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA 86
Query: 59 VGEMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSL 118
+ T++E L + + +LA P+
Sbjct: 87 IMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ------------------ 128
Query: 119 ITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSS 178
+T VG E ISGGQ++R+ + K L +DE + LDS
Sbjct: 129 --------------LNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 179 TTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFE 238
+ + K L ++ T L+ + T D I + +GQI G E
Sbjct: 174 SESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGKHN---ELVA 226
Query: 239 SCGF 242
+
Sbjct: 227 THPL 230
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 82.4 bits (203), Expect = 7e-18
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 15/218 (6%)
Query: 719 KLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPKKQE 776
K+ L+ V G ++G SGAGKTT M ++AG + G + D R+ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 777 T--FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL 834
R G Q P +T E++ + + + VEEV ++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHV 133
Query: 835 KDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 893
+ LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 894 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
G T++ H P+ DIF D + +L G+++ G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 64.0 bits (155), Expect = 1e-11
Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 51/254 (20%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRD---LKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60
+LGP +GKTT + +AG L + + +L + + Q
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95
Query: 61 EMTVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLIT 120
+T E + F + + ++ E + I
Sbjct: 96 NLTAFENIAFPLTNMKMSKEE------------------------IRKRVEEVAKILDIH 131
Query: 121 DYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 180
+ R +SG Q++RV +V L +DE + LD+
Sbjct: 132 HV---------------LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 181 YQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESC 240
++++ T+L+ PA + F + D + +L +G++V G E + +
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDN---- 231
Query: 241 GFCCPERKGTADFL 254
P A +
Sbjct: 232 ----PVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 70.5 bits (172), Expect = 6e-14
Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 17/211 (8%)
Query: 723 LNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG-FPKKQETFARI 781
L+ ++ G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 782 SGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGL 841
+ QN P + VK+ +R+ K + V + +++E L D
Sbjct: 74 IAFVYQNYSLFPHMNVKK--NLEFGMRMKKIKDPKR----VLDTARDLKIEHLLDRN--- 124
Query: 842 PGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 900
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 901 CTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931
H + + D + ++ G++I G
Sbjct: 183 HITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 65.5 bits (159), Expect = 3e-12
Identities = 56/252 (22%), Positives = 90/252 (35%), Gaps = 55/252 (21%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQK-TSAYISQNDVHVGEM 62
+LGP +GKT L +AG D G I +G + + P+K A++ QN M
Sbjct: 31 ILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
VK+ L+F R + +R D
Sbjct: 88 NVKKNLEFGMRMKKIKDP--------KRVLDT---------------------------- 111
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
+ L ++ D +SGG+++RV +V K L +DE + LD T
Sbjct: 112 -ARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
+ L + T+L E + D I ++ +G+++ G E E FE
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPE---EIFEK--- 218
Query: 243 CCPERKGTADFL 254
P A F+
Sbjct: 219 --PVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.9 bits (168), Expect = 2e-13
Identities = 46/226 (20%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 737 ALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIRISGFPKKQETFARISGYCEQNDIHSP 793
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 794 QVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK 853
++V ++ Y V + ++ V E+ + + + L D LS +R+
Sbjct: 84 HLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQ 133
Query: 854 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFE 912
R+ +A LV P ++ +DEP S +D + ++M +R + ++ H +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAM 192
Query: 913 AFDELLLLKRGGQVIYSGP----LGRNSHKVIEYYEAIPGVPKIKE 954
DE+ ++ G+++ G + +V E+ A + K+ +
Sbjct: 193 LADEVAVM-LNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSK 237
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 65.4 bits (159), Expect = 4e-12
Identities = 47/252 (18%), Positives = 91/252 (36%), Gaps = 55/252 (21%)
Query: 4 LLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTS-AYISQNDVHVGEM 62
LLGP +GK+ L +AG + D RGE+ NG + P++ ++ Q+ +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 63 TVKETLDFSARCLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDY 122
+V + + R + R + E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 123 TLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQ 182
+ + D +SGG+++RV +V + L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 183 IVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFFESCGF 242
+++ L+ + D IL E L D++ ++ G+IV +G + +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 243 CCPERKGTADFL 254
+ A+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 22/199 (11%), Positives = 36/199 (18%), Gaps = 36/199 (18%)
Query: 737 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVT 796
+ G G GKTTL+ + R +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI--- 58
Query: 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLT 856
+ + +
Sbjct: 59 --------FSSKFFTSKKLVGSYGVNVQYFE-------------------ELAIPILERA 91
Query: 857 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 916
+I +DE + D VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 917 LLLLKRGGQVIYSGPLGRN 935
+ L G +I P R+
Sbjct: 149 IRRLP-GAVLIELTPENRD 166
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 3/83 (3%)
Query: 3 LLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEM 62
++ G P GKTTL+ + +L + R E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 63 TVKETLDFSARCLGVGTRYELLS 85
+ T GV +Y
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEEL 83
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1293 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.64 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.5 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.43 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.11 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.09 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.09 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.85 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.84 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.79 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.09 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.95 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.92 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.87 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.7 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.43 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.36 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.36 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.24 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.22 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.19 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.97 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.87 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.85 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.82 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.81 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.78 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.76 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.71 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.7 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.68 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.59 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.56 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.56 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.53 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.5 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.49 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.44 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.4 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.39 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.37 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.35 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.35 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.33 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.27 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.27 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.25 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.13 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.12 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.11 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.1 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.09 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.09 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.08 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.06 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.05 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.04 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.04 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.03 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.02 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.02 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.01 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.0 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.99 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.98 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.97 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.97 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.96 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.95 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.94 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.94 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.94 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.94 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.91 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.91 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.91 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.9 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.9 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.89 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.85 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.85 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.84 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.84 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.83 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.81 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.81 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.8 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.79 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.75 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.75 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.74 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.72 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.71 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.71 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.7 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.69 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.69 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.65 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.64 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.63 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.61 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.58 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.58 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.55 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.55 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.54 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.47 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.47 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.46 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.45 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.44 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.43 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.41 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.41 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.39 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.36 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.35 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.32 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.3 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.28 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.28 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.26 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.26 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.26 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.24 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.21 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.21 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.19 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.19 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.18 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.16 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.14 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.13 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.11 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.11 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.11 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.1 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.1 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.09 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.08 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.05 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.02 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.0 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.98 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.96 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.96 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.94 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.93 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.93 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.92 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.91 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.91 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.91 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.9 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.88 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.87 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.86 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.85 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.84 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.82 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.81 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.8 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.78 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.74 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.74 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.74 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.74 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.73 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.72 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.71 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.68 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.64 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.63 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.61 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.61 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.57 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.52 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.52 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.45 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.45 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.41 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.4 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.39 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.39 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.38 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.37 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.36 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.35 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.33 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.31 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.31 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.3 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.27 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.25 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.25 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.2 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.19 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.17 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.16 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.15 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.1 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.05 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.04 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.98 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.97 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.96 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.96 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.95 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.94 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.92 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.88 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.87 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.86 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.85 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.85 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.83 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.82 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.82 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.82 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.81 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.77 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.76 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.74 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.74 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.73 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.73 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.71 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.7 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.68 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.67 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.66 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.63 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.63 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.61 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.6 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.6 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.52 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.49 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.44 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.44 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.43 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.42 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.41 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.39 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.37 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.36 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.35 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.34 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.33 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.31 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.3 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.27 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.27 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.24 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.22 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.21 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.2 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.19 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.19 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.14 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.14 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.11 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.07 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.07 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.06 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.05 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.04 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.03 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.98 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.98 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.95 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.95 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.94 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.93 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.92 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.92 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.89 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.87 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.86 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.86 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.86 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.85 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.85 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.82 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.81 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.78 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.77 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.77 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.77 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.76 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.75 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.74 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.7 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.69 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.66 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.65 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.64 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.63 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.59 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.57 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.55 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.51 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.51 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.51 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.5 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.48 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.46 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 92.44 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 92.4 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.39 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.32 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.29 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.29 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.28 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.27 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.26 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.25 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.24 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.18 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.12 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.09 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.08 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.07 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.04 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.01 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.0 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.97 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.89 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.88 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.86 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.85 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.77 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.76 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.75 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.74 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.72 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.7 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.69 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.68 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.68 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.66 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.65 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 91.65 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.64 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.64 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.5 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.48 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.47 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.44 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.41 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 91.39 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.38 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.36 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.34 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.34 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.31 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.3 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.28 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.27 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.24 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.24 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.19 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.12 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.06 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 90.94 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.93 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.84 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.84 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.82 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.77 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.74 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.57 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.53 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.49 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.46 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.46 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.38 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.07 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.05 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.99 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.94 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.91 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.86 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.83 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.76 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.64 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.46 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.41 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.36 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 89.33 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.27 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.26 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.24 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.08 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.96 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 88.85 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.82 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.59 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.48 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.46 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.34 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 88.23 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.07 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.53 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.36 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.29 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.21 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.21 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 86.9 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 86.85 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.81 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.7 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 85.84 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.75 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.74 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.62 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.21 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 84.91 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 84.77 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.41 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 84.37 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 84.37 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.21 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.94 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.4 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.36 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.75 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.39 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 80.96 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=324.88 Aligned_cols=214 Identities=24% Similarity=0.336 Sum_probs=186.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
.++.+|++... +++.+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~y-------------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred CEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 18998699998-------------999998560668869989999999998099999999648788--989899999980
Q ss_pred CHH-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 900-------0134489972699889999999999999970378899999999999999998399432201126999887
Q 000773 774 KQE-------TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTG 846 (1293)
Q Consensus 774 ~~~-------~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~ 846 (1293)
... ..++.+|||+|++.++|.+||+|++.+...++ ..+.++..++++++++.+++.+..+..+. .
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----E 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----G
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 356644424532255120022122231011667633068772---99989999999999987599667629933-----4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCE
Q ss_conf 7988999999999995199778995999999999999999999998738-998999926998999999857521024968
Q 000773 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 847 lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~ 925 (1293)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|++. ++...+|++++|. +|+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-9999699999998-999
Q ss_pred EEEECCC
Q ss_conf 9993799
Q 000773 926 VIYSGPL 932 (1293)
Q Consensus 926 ~~~~g~~ 932 (1293)
+++.|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=331.44 Aligned_cols=214 Identities=23% Similarity=0.346 Sum_probs=187.3
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
.++.+|++.+. +++.+|++||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~y-------------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 49998799999-------------999998130678879989999999998299999999758999--878799916413
Q ss_pred CH-HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 90-00134489972699889999999999999970378899999999999999998399432201126999887798899
Q 000773 774 KQ-ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQR 852 (1293)
Q Consensus 774 ~~-~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 852 (1293)
.. ...++.+|||+|++.+++.+||+|++.|.+.++ ..++++..++++++++.++|.+..|..+. .||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHH
T ss_conf 547700015899800335342220999999999873---99999999999999987598556609954-----6999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECC
Q ss_conf 9999999995199778995999999999999999999998738-998999926998999999857521024968999379
Q 000773 853 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGP 931 (1293)
Q Consensus 853 kr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~ 931 (1293)
||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|+|+++|++. +....+|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000773 932 L 932 (1293)
Q Consensus 932 ~ 932 (1293)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=328.95 Aligned_cols=205 Identities=27% Similarity=0.365 Sum_probs=180.0
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHH-CCCCEEEEECCCCCCCCC
Q ss_conf 4344321101045661683999997999609999998969999981467999969217900-013448997269988999
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQ 794 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~ 794 (1293)
.++++.+|+|||+.+++||+++|+||||||||||+++++|..++ .+|+|.++|.+.... ..++.+|||+|++.+++.
T Consensus 9 ~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 86 (232)
T d2awna2 9 AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPH 86 (232)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCTTSCGGGTCEEEECSSCCC---
T ss_pred EECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEECCCCCHHHCEEEEECCCCCCCCC
T ss_conf 98999998111778869989999989998299999999658788--8888999999778886444322234334202643
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99999999999703788999999999999999983994322011269998877988999999999995199778995999
Q 000773 795 VTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 795 lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpt 874 (1293)
+||+|++.|...++. .++++..++++++++.+++.+..|..+. .||||||||++||++|+.+|++|+|||||
T Consensus 87 ~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL~~~P~illlDEPt 158 (232)
T d2awna2 87 LSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPL 158 (232)
T ss_dssp ---------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTT
T ss_pred HHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 337889789998759---9889999999999975788656648965-----69999999999999970399889975888
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCC
Q ss_conf 99999999999999999873-89989999269989999998575210249689993799
Q 000773 875 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~ 932 (1293)
+|||+.++..+++.|+++.+ .|.|+|+++|++. +....+|++++|. +|+++..|++
T Consensus 159 s~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 7889889989999999998742987999948999-9999699999997-9999998089
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=323.92 Aligned_cols=216 Identities=27% Similarity=0.374 Sum_probs=186.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
.++.+|+++..+ .++..+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEEEEEEEC-----------CCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 899975799988-----------9998998040789879989999989998099999999758688--874599999995
Q ss_pred CH------HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 90------001344899726998899999999999999703788999999999999999983994322011269998877
Q 000773 774 KQ------ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGL 847 (1293)
Q Consensus 774 ~~------~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~l 847 (1293)
.. ...++.+|||+|+..++|.+||+|++.|....+ ..++.+.+++++++++.+||.+..|..++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCEE
Q ss_conf 988999999999995199778995999999999999999999998738-9989999269989999998575210249689
Q 000773 848 SIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQV 926 (1293)
Q Consensus 848 SgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~ 926 (1293)
|||||||++|||||+.+|++|++||||+|||+.++..+++.++++.++ |.|+|+++|++. ++...+|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 993799
Q 000773 927 IYSGPL 932 (1293)
Q Consensus 927 ~~~g~~ 932 (1293)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=318.72 Aligned_cols=219 Identities=25% Similarity=0.376 Sum_probs=184.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 79963599997894201235443443211010456616839999979996099999989699999814679999692179
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~ 774 (1293)
++.+|+++..... .+...+|+|||+.+++||++||+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCC--CCCEEEECCEECC
T ss_conf 8999079994899---------8208987133778849979999889999821655750688777--7662699999857
Q ss_pred HH---C----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 00---0----13448997269988999999999999997037889999999999999999839943-2201126999887
Q 000773 775 QE---T----FARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-LKDAIVGLPGVTG 846 (1293)
Q Consensus 775 ~~---~----~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~ 846 (1293)
.. . +++.+|||+|+..++|.+||+|++.+....+.....+.+++.+.+.+.++.++|.+ ..+..+. .
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~-----~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----Q 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----G
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHH-----H
T ss_conf 68855512312555778804124176866888775788872247899999999999988762423455348802-----3
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCE
Q ss_conf 7988999999999995199778995999999999999999999998738-998999926998999999857521024968
Q 000773 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 847 lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~ 925 (1293)
||||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|+++|++ +....+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEEC-CE
T ss_conf 8999999999875652278889946876546989999999999999984399999987888--99986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9993799
Q 000773 926 VIYSGPL 932 (1293)
Q Consensus 926 ~~~~g~~ 932 (1293)
++..|+.
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=321.94 Aligned_cols=219 Identities=22% Similarity=0.302 Sum_probs=185.4
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 79963599997894201235443443211010456616839999979996099999989699999814679999692179
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~ 774 (1293)
++.+|++...... .+...+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCCCEEECCEEEE
T ss_conf 7998279996999---------8148986150578869979999899989888999987588636--6773288676852
Q ss_pred H---H---CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0---0---013448997269988999999999999997037889999999999999999839943220112699988779
Q 000773 775 Q---E---TFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLS 848 (1293)
Q Consensus 775 ~---~---~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lS 848 (1293)
. . .+++.+|||+|+..+++.+||+|++.+...++ ..++++..++++++++.+||.+..+..+. .||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHCCHH-----HCC
T ss_conf 0875551155416643022522279964999999999984---99989999999999997699035548943-----499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCEEE
Q ss_conf 88999999999995199778995999999999999999999998738-99899992699899999985752102496899
Q 000773 849 IEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVI 927 (1293)
Q Consensus 849 gGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~ 927 (1293)
||||||++||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|+|+++|++. ++...+|++++|.+ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCCCC
Q ss_conf 9379998
Q 000773 928 YSGPLGR 934 (1293)
Q Consensus 928 ~~g~~~~ 934 (1293)
+.|++.+
T Consensus 221 ~~G~~~e 227 (240)
T d3dhwc1 221 EQDTVSE 227 (240)
T ss_dssp EEEETTT
T ss_pred EECCHHH
T ss_conf 9879999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=320.37 Aligned_cols=206 Identities=22% Similarity=0.303 Sum_probs=182.8
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCH--HCCCCEEEEECCCCCCC
Q ss_conf 4434432110104566168399999799960999999896999998146799996921790--00134489972699889
Q 000773 715 VAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFARISGYCEQNDIHS 792 (1293)
Q Consensus 715 ~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~~~v~q~~~~~ 792 (1293)
++++++.+|+|+|+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|+..++
T Consensus 10 k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~ 87 (238)
T d1vpla_ 10 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAY 87 (238)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETTTCHHHHHTTEEEECTTCCCC
T ss_pred EEECCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECCCCHHHHHHHEEEEEECCCCC
T ss_conf 999999998062568848979999999999999999999669887--888799986724468398872186750015468
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99999999999997037889999999999999999839943220112699988779889999999999951997789959
Q 000773 793 PQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 793 ~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDE 872 (1293)
+++|+.|++.|.+.++. .+..+..+.++.+++.+++.+..+..++ .+|||||||++||++|+++|++++|||
T Consensus 88 ~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~illLDE 159 (238)
T d1vpla_ 88 RNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDE 159 (238)
T ss_dssp TTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 78667788898998617---9989999999999986797888850453-----379989899999999865999887337
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCC
Q ss_conf 999999999999999999987389989999269989999998575210249689993799
Q 000773 873 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 873 ptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~ 932 (1293)
||+|||+.++..+++++++++++|+|||+++|+++ ++...+|++++|. +|++++.|++
T Consensus 160 Pt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~~ 217 (238)
T d1vpla_ 160 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGTV 217 (238)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEEH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 98897989999999999999965998999959899-9999699999998-9999999289
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=316.37 Aligned_cols=197 Identities=23% Similarity=0.295 Sum_probs=173.7
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHH-CCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 21101045661683999997999609999998969999981467999969217900-01344899726998899999999
Q 000773 721 RLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVTVKE 799 (1293)
Q Consensus 721 ~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e 799 (1293)
.+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.+||++|+..++|.+||+|
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHH
T ss_conf 788433789879989999989998299999999647688--878899956734652165740561512111174665778
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf 99999970378899999999999999998399432201126999887798899999999999519977899599999999
Q 000773 800 SLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDA 879 (1293)
Q Consensus 800 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~ 879 (1293)
|+.|...++.. ... ++++++++.+++.+..|..+. .||||||||++|||+|+.+|++|+|||||+|||+
T Consensus 92 nl~~~~~~~~~---~~~---~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~ 160 (229)
T d3d31a2 92 NLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (229)
T ss_dssp HHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred HHHHHHHHCCC---CHH---HHHHHHHHHHCCHHHHHCCHH-----HCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCH
T ss_conf 88887764055---389---999999998256555758955-----4799984014030434436771443478767998
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCC
Q ss_conf 999999999999873-89989999269989999998575210249689993799
Q 000773 880 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 880 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~ 932 (1293)
.++..+.+.++++.+ .|.|||+++|++. +....+|++++|.+ |++++.|++
T Consensus 161 ~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 161 RTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 99999999999998647968999749999-99996999999979-999998699
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=311.81 Aligned_cols=206 Identities=22% Similarity=0.276 Sum_probs=176.9
Q ss_pred CCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCH----------------HCCC
Q ss_conf 434432110104566168399999799960999999896999998146799996921790----------------0013
Q 000773 716 AEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ----------------ETFA 779 (1293)
Q Consensus 716 ~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------------~~~~ 779 (1293)
.++...+|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...+
T Consensus 11 ~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r 88 (258)
T d1b0ua_ 11 RYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR 88 (258)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECCEEECTTSSEEESCHHHHHHHH
T ss_pred EECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCEEECCEEECCCCCCCHHCCCCCHHHHHHHH
T ss_conf 98999988150668869979999989998299999999747667--8997799999933677520000235176799974
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4489972699889999999999999970378899999999999999998399432-201126999887798899999999
Q 000773 780 RISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-KDAIVGLPGVTGLSIEQRKRLTIA 858 (1293)
Q Consensus 780 ~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGerkr~~ia 858 (1293)
+.+|||+|+..+++.+||.|++.+..... ...+..+..+++.++++.+++.+. .+...+ .||||||||++||
T Consensus 89 ~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~-----~LSGG~~QRv~iA 161 (258)
T d1b0ua_ 89 TRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGKYPV-----HLSGGQQQRVSIA 161 (258)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG-----GSCHHHHHHHHHH
T ss_pred CCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHH
T ss_conf 54489983323141101021365657876--2999899999999999982995244306822-----0567788898999
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCC
Q ss_conf 99951997789959999999999999999999987389989999269989999998575210249689993799
Q 000773 859 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 859 ~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~ 932 (1293)
++|+.+|++|++||||+|||+.++..+.+.|++++++|.|||+++|++. ++...+|++++|.+ |++++.|++
T Consensus 162 raL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 162 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 9984399878852455568878888998765541036883389948999-99986999999979-999998499
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=315.97 Aligned_cols=217 Identities=23% Similarity=0.298 Sum_probs=182.8
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 79963599997894201235443443211010456616839999979996099999989699999814679999692179
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~ 774 (1293)
++.+|++.+ ++..++|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 L~v~nlsk~-------------yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i~ 69 (254)
T d1g6ha_ 5 LRTENIVKY-------------FGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDIT 69 (254)
T ss_dssp EEEEEEEEE-------------ETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEE-------------ECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 999778999-------------7996887121799889979999999998499999999779768--8737999999664
Q ss_pred HH---C-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 00---0-13448997269988999999999999997037----------8899999999999999998399432201126
Q 000773 775 QE---T-FARISGYCEQNDIHSPQVTVKESLIYSAFLRL----------AKEVSKEDKIIFVEEVMDLVELESLKDAIVG 840 (1293)
Q Consensus 775 ~~---~-~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~----------~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g 840 (1293)
.. . .++-++|++|+..+++.+||.||+.+++..+. ......++..+++.++++.+++.+..|..++
T Consensus 70 ~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (254)
T d1g6ha_ 70 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 149 (254)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHH
T ss_conf 05699999833872577642478874232143013330345045665421353289999999999876196302059535
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEE
Q ss_conf 99988779889999999999951997789959999999999999999999987389989999269989999998575210
Q 000773 841 LPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 841 ~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.||++++|+.+ ++.+.+|++++|
T Consensus 150 -----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm 223 (254)
T d1g6ha_ 150 -----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 223 (254)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred -----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEE
T ss_conf -----69918888999999997592723243976569999999999999999978998999947699-999869999999
Q ss_pred ECCCEEEEECCCC
Q ss_conf 2496899937999
Q 000773 921 KRGGQVIYSGPLG 933 (1293)
Q Consensus 921 ~~~g~~~~~g~~~ 933 (1293)
.+ |++++.|+++
T Consensus 224 ~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 224 FN-GQIIAEGRGE 235 (254)
T ss_dssp ET-TEEEEEEESH
T ss_pred EC-CEEEEEECHH
T ss_conf 69-9899996689
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=313.94 Aligned_cols=192 Identities=23% Similarity=0.327 Sum_probs=168.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 98983799999689998982898999813579998884068766-55417866544465788898999999965028875
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-PQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~-~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.+||.++.... .++.+|||+|++.+++.+||+||+.|+.+.++.
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~-- 108 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKF-- 108 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CC--
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCC--
T ss_conf 99999999982999999997589998---7879991641354770001589980033534222099999999987399--
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22244685698652089972678799987420022310019999999299544675337886533662331146899987
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~aL 159 (1293)
+.. +.+..++++++.+||++..|..+. .||||||||++|||||
T Consensus 109 ------------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 109 ------------------PKD--------------EIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVARAI 151 (239)
T ss_dssp ------------------CHH--------------HHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHHHHH
T ss_pred ------------------CHH--------------HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHH
T ss_conf ------------------999--------------999999999987598556609954-----6999998899997664
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 4698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 160 ~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
+.+|+|++|||||+|||+.++..+++.|+++.++.|+|+|+++| ...++..++|+|++|++|++++.|+++++..
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH-DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 04998243068866689899989999999998731980799948-9999998699999998999999859999986
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=314.56 Aligned_cols=192 Identities=22% Similarity=0.343 Sum_probs=169.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989837999996899989828989998135799988840687665-5417866544465788898999999965028875
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-QKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~-~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.+||.++..... ++.+|||+|++.+++.+||+||+.|+...++..
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~- 103 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK- 103 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC-
T ss_conf 99999899982999999996587888---88899999977888644432223433420264333788978999875998-
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22244685698652089972678799987420022310019999999299544675337886533662331146899987
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~aL 159 (1293)
+.+.++.++++++.++|++..|..+.+ ||||||||++|||||
T Consensus 104 ---------------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~~-----LSGGqkQRvaiAraL 145 (232)
T d2awna2 104 ---------------------------------KEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTL 145 (232)
T ss_dssp ----------------------------------CHHHHHHHHHHHHC--------------------------CHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHHCCCHHHHHCCHHH-----CCHHHHHHHHHHHHH
T ss_conf ---------------------------------899999999999757886566489656-----999999999999997
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 4698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 160 ~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
+.+|++++|||||+|||+.++.++++.|+++.++.|+|+|++.| ...++..++|+|++|.+|++++.|+++++..
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH-DQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 03998899758887889889989999999998742987999948-9999999699999997999999808999973
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=313.57 Aligned_cols=214 Identities=22% Similarity=0.335 Sum_probs=178.0
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
-++.+|++.. ++++.+|+|||+.+++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~Lev~~l~k~-------------yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVY-------------YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEE-------------ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEE-------------ECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCC
T ss_conf 7999618999-------------8998888302578889979999999998599999999678888--803898424434
Q ss_pred CHH---CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 900---01-344899726998899999999999999703788999999999999999983-9943220112699988779
Q 000773 774 KQE---TF-ARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLV-ELESLKDAIVGLPGVTGLS 848 (1293)
Q Consensus 774 ~~~---~~-~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~~g~~~~~~lS 848 (1293)
... .. +.-++|++|+..+++.+||+|++.+.+..+.. .+...+.++++++.+ ++.+..+..++ .||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGG-----TLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSS-----SSC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCHH-----HCC
T ss_conf 46608888874235567655457763699999988873278----889999999999874176888758543-----389
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEE
Q ss_conf 88999999999995199778995999999999999999999998738998999926998999999857521024968999
Q 000773 849 IEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIY 928 (1293)
Q Consensus 849 gGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~ 928 (1293)
||||||++||++|+.+|++|+|||||+|||+.++..+++.+++++++|.||++++|+.. ++...+|++++|.+ |++++
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~ 219 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEE
T ss_conf 99999999999998299874003988679999999999999999968998999958899-99996999999989-99999
Q ss_pred ECCCC
Q ss_conf 37999
Q 000773 929 SGPLG 933 (1293)
Q Consensus 929 ~g~~~ 933 (1293)
.|+++
T Consensus 220 ~g~~~ 224 (240)
T d1ji0a_ 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred ECCHH
T ss_conf 84899
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=310.12 Aligned_cols=192 Identities=24% Similarity=0.322 Sum_probs=167.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98983799999689998982898999813579998884068766-------55417866544465788898999999965
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV-------PQKTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~-------~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~ 73 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.+|||+|++.+++.+||+||+.|+.+
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~ 107 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHH
T ss_conf 99999999980999999996487889---898999999803566444245322551200221222310116676330687
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 02887522244685698652089972678799987420022310019999999299544675337886533662331146
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRV 153 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRl 153 (1293)
.++.. . .+.++.++++++.++|++..+...+ .||||||||+
T Consensus 108 ~~~~~--------------------~--------------~e~~~~v~~~l~~~~l~~~~~~~p~-----~LSGGqkQRv 148 (240)
T d1g2912 108 LRKVP--------------------R--------------QEIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRV 148 (240)
T ss_dssp HTTCC--------------------H--------------HHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHH
T ss_pred HCCCC--------------------H--------------HHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHH
T ss_conf 72999--------------------8--------------9999999999987599667629933-----4999999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHH
Q ss_conf 89998746981867637985412899999999999997617988999952798469972002688559908987671049
Q 000773 154 TTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERV 233 (1293)
Q Consensus 154 sIA~aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l 233 (1293)
+|||||+.+|+|++|||||+|||+.++.++++.|+++.++.|.|+|++.| ..+++..++|+|++|.+|++++.|+++++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-d~~~~~~~~drv~vm~~G~iv~~G~~~el 227 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH-DQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 99999826998898258876569899989999999998636988999959-99999996999999989999998599999
Q ss_pred HH
Q ss_conf 99
Q 000773 234 LE 235 (1293)
Q Consensus 234 ~~ 235 (1293)
..
T Consensus 228 ~~ 229 (240)
T d1g2912 228 YD 229 (240)
T ss_dssp HH
T ss_pred HH
T ss_conf 82
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=313.04 Aligned_cols=193 Identities=24% Similarity=0.394 Sum_probs=170.9
Q ss_pred CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHH-CCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 1045661683999997999609999998969999981467999969217900-013448997269988999999999999
Q 000773 725 EVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQE-TFARISGYCEQNDIHSPQVTVKESLIY 803 (1293)
Q Consensus 725 ~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~~~v~q~~~~~~~lTv~e~l~~ 803 (1293)
|||+.+. +|.++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCC--CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-979999979998099999999739998--9628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 99703788999999999999999983994322011269998877988999999999995199778995999999999999
Q 000773 804 SAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 883 (1293)
Q Consensus 804 ~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~ 883 (1293)
+ ++ ..++.+++++++++++.+|+.+..+..+. .||||||||++||+||+.+|++|+|||||+|||+.++.
T Consensus 94 ~--l~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 G--LR---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp T--CT---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred H--HC---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 3--23---36778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCC
Q ss_conf 999999998738-9989999269989999998575210249689993799
Q 000773 884 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPL 932 (1293)
Q Consensus 884 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~ 932 (1293)
.+.+.++++.++ |.|+|+++|++. ++...+|++++|.+ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=309.61 Aligned_cols=189 Identities=26% Similarity=0.355 Sum_probs=167.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989837999996899989828989998135799988840687665-5417866544465788898999999965028875
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-QKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~-~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.+|||+|++.+++.+||+||+.|+.+.++..
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~- 103 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK- 103 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC-
T ss_conf 99999899982999999996476888---78899956734652165740561512111174665778888877640553-
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22244685698652089972678799987420022310019999999299544675337886533662331146899987
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~aL 159 (1293)
.+++++++++.++|.+..|..+++ |||||||||+|||||
T Consensus 104 ------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSGG~~QRvaiAraL 142 (229)
T d3d31a2 104 ------------------------------------DPKRVLDTARDLKIEHLLDRNPLT-----LSGGEQQRVALARAL 142 (229)
T ss_dssp ------------------------------------CHHHHHHHHHHTTCTTTTTSCGGG-----SCHHHHHHHHHHHHT
T ss_pred ------------------------------------HHHHHHHHHHHHCCHHHHHCCHHH-----CCHHHHCCHHHHHHH
T ss_conf ------------------------------------899999999982565557589554-----799984014030434
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 4698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 160 ~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
+.+|++++|||||+|||+.++.++++.|+++.++.|.|+|++.| ...++..++|+|++|.+|+++++|+++++.+
T Consensus 143 ~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtH-d~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH-DQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES-CHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 43677144347876799899999999999998647968999749-9999999699999997999999869999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=306.80 Aligned_cols=191 Identities=23% Similarity=0.302 Sum_probs=167.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------CCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 989837999996899989828989998135799988840687665------54178665444657888989999999650
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP------QKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~------~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... |+.+|||+|++-+++.+||+||+.|+.+.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~ 109 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99998999898889999875886366---773288676852087555115541664302252227996499999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28875222446856986520899726787999874200223100199999992995446753378865336623311468
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRls 154 (1293)
.+. +. .+.+++++++++.+||++..|...++ |||||||||+
T Consensus 110 ~~~--------------------~~--------------~~~~~~v~~~L~~vgL~~~~~~~~~~-----LSGG~~QRva 150 (240)
T d3dhwc1 110 DNT--------------------PK--------------DEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVA 150 (240)
T ss_dssp TTC--------------------CT--------------THHHHHHHHHHHHHSTTTTTSSCBSC-----CCHHHHHHHH
T ss_pred CCC--------------------CH--------------HHHHHHHHHHHHHCCCCHHHHCCHHH-----CCHHHHHHHH
T ss_conf 499--------------------98--------------99999999999976990355489434-----9999998999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHH
Q ss_conf 99987469818676379854128999999999999976179889999527984699720026885599089876710499
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 IA~aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~ 234 (1293)
|||||+.+|+++++||||+|||+.++..+++.|+++.++.|.|+|+..| ...++..++|+|++|.+|++++.|+++++.
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTH-dl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH-EMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBS-CHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8640105898687446556589888567999999998646978999838-999999869999999799999987999997
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=305.46 Aligned_cols=190 Identities=24% Similarity=0.376 Sum_probs=165.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 989837999996899989828989998135799988840687665-5417866544465788898999999965028875
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP-QKTSAYISQNDVHVGEMTVKETLDFSARCLGVGT 79 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~-~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~~~ 79 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.+||.++..... ++.+|||+|++.+++.+||+||+.|+.+..
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~---- 98 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---- 98 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS----
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHHCCC----
T ss_conf 99999799980999999997399989---62899999998869989928522523144352201557666532336----
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22244685698652089972678799987420022310019999999299544675337886533662331146899987
Q 000773 80 RYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMI 159 (1293)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~aL 159 (1293)
+.. +.+++++++++.+||.+..+.... .|||||||||+|||||
T Consensus 99 ------------------~~~--------------~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral 141 (240)
T d2onka1 99 ------------------ERV--------------ERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARAL 141 (240)
T ss_dssp ------------------CHH--------------HHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHH
T ss_pred ------------------CHH--------------HHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHH
T ss_conf ------------------778--------------899999999986383756657944-----4899998999998777
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 4698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 160 ~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
+.+|++++|||||+|||+.++..+++.|+++.++.++|+|++.| ...++..++|+|++|++|+++++|+++++..
T Consensus 142 ~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtH-d~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH-DLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 51677067528655588799999999999998743976999818-9999999699999998999999906999832
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=309.12 Aligned_cols=192 Identities=20% Similarity=0.286 Sum_probs=166.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 9898379999968999898289899981357999888406876------6554178665444657888989999999650
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF------VPQKTSAYISQNDVHVGEMTVKETLDFSARC 74 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~------~~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~ 74 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++... ..++.+|||+|++.+++.+||+||+.|+.+.
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~ 109 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999899980999999997586888---745999999951373111531204514773043346666577776655676
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 28875222446856986520899726787999874200223100199999992995446753378865336623311468
Q 000773 75 LGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVT 154 (1293)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRls 154 (1293)
.+. +.. +.++.++++++.+||++..|...++ |||||||||+
T Consensus 110 ~~~--------------------~~~--------------~~~~~v~~~l~~~gL~~~~~~~p~~-----LSGGqkQRva 150 (242)
T d1oxxk2 110 MKM--------------------SKE--------------EIRKRVEEVAKILDIHHVLNHFPRE-----LSGAQQQRVA 150 (242)
T ss_dssp SSC--------------------CHH--------------HHHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHHH
T ss_pred HCC--------------------CHH--------------HHHHHHHHHHHHCCHHHHHHCCHHH-----CCHHHHHHHH
T ss_conf 137--------------------999--------------9999999998665917666489545-----9999985899
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHH
Q ss_conf 99987469818676379854128999999999999976179889999527984699720026885599089876710499
Q 000773 155 TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVL 234 (1293)
Q Consensus 155 IA~aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~ 234 (1293)
|||||+.+|+++++||||+|||+.++.++++.|+++.++.|.|+|++.| ...++..++|+|++|.+|++++.|+++++.
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTH-d~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSH-DPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEES-CHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 8757760466145447866799899889989999998635987999979-999999969999999899999986999998
Q ss_pred H
Q ss_conf 9
Q 000773 235 E 235 (1293)
Q Consensus 235 ~ 235 (1293)
.
T Consensus 230 ~ 230 (242)
T d1oxxk2 230 D 230 (242)
T ss_dssp H
T ss_pred H
T ss_conf 6
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=305.93 Aligned_cols=216 Identities=23% Similarity=0.342 Sum_probs=169.3
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
.++++|+++.++. ..++.+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEECCC----------CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 6999998998899----------9999767443899849989999999998499999998614378--768998899853
Q ss_pred CH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 90---0013448997269988999999999999997037889999999999-----999999839943220112699988
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIF-----VEEVMDLVELESLKDAIVGLPGVT 845 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~~l~~l~l~~~~~~~~g~~~~~ 845 (1293)
.. ..+++.++||+|++.+++ .|++|++.+... ......+.... ..+.++ .+.+-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 11013788877654045650027-634655454210----1302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHEEECCC
Q ss_conf 77988999999999995199778995999999999999999999998738-99899992699899999985752102496
Q 000773 846 GLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 846 ~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~~g 924 (1293)
.||||||||++|||+|+.+|+|++|||||++||+.++..+++.|+++.++ ++|+|+++|++ +..+.+|++++|. +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEE-TT
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEE-CC
T ss_conf 68954704899860445687078716757656853689999999997650698999995979--9998599999998-99
Q ss_pred EEEEECCC
Q ss_conf 89993799
Q 000773 925 QVIYSGPL 932 (1293)
Q Consensus 925 ~~~~~g~~ 932 (1293)
+++..|++
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.2e-45 Score=299.02 Aligned_cols=189 Identities=19% Similarity=0.252 Sum_probs=159.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC-------CEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9898379999968999898289899981357999888406876655-------417866544465788898999999965
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ-------KTSAYISQNDVHVGEMTVKETLDFSAR 73 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~-------~~~~yv~Q~d~l~~~lTVrE~l~f~~~ 73 (1293)
+++|+|||||||||||++|+|..+|+ +|+|.++|.++.....+ +.+|||+|++.+++.+||+||+.++..
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 109 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHH
T ss_conf 99998899998216557506887777---662699999857688555123125557788041241768668887757888
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCHH
Q ss_conf 0288752224468569865208997267879998742002231001999999929954-467533788653366233114
Q 000773 74 CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDI-CKDTIVGDEMNRGISGGQKKR 152 (1293)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~T~VG~~~~~gLSGGQKrR 152 (1293)
.+..... +. .+....+.++++.++|++ ..+..+. .||||||||
T Consensus 110 ~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~L~~~~~~~~p~-----~LSGGqkQR 153 (230)
T d1l2ta_ 110 FKYRGAM-----------------SG--------------EERRKRALECLKMAELEERFANHKPN-----QLSGGQQQR 153 (230)
T ss_dssp TCCSSCC-----------------CH--------------HHHHHHHHHHHHHTTCCGGGTTCCGG-----GSCHHHHHH
T ss_pred HHCCCCC-----------------CH--------------HHHHHHHHHHHHHHCHHHHHHCCCHH-----HCCHHHHHH
T ss_conf 7224789-----------------99--------------99999999988762423455348802-----389999999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCH
Q ss_conf 689998746981867637985412899999999999997617988999952798469972002688559908987671
Q 000773 153 VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 153 lsIA~aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~ 230 (1293)
|+|||||+.+|+|+++||||||||+.++..+++.|+++.++.|+|+|+..|.. + ..+.+|+|++|.+|++++.|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~-~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH-H-HHHHCCEEEEEECCEEEEECCC
T ss_conf 99875652278889946876546989999999999999984399999987888-9-9986998999989999995257
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-45 Score=297.44 Aligned_cols=211 Identities=26% Similarity=0.412 Sum_probs=168.8
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
.++|+|+++.++ .+.+.+|+|||+.+++||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEEEEEEEC-----------CCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCEEEECCEEE
T ss_conf 929999999908-----------9996037424899849999999999999899999999735788--888999999994
Q ss_pred CH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 90---00134489972699889999999999999970378899999999999999998399-------432201126999
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-------ESLKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~g~~~ 843 (1293)
.. ..+++.++||+|++.++ ..|++||+.+.. ...+.++ +.+..+..++ ..-.++.++..
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQ- 136 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTT-
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCC-
T ss_conf 4002465535288982446557-840003522357-----5543888----9999999755788876320134432787-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECC
Q ss_conf 88779889999999999951997789959999999999999999999987389989999269989999998575210249
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++|||+|+.+|++++|||||++||+.++..+++.|+++.+ ++|+|+++|+++ ....+|++++|. +
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~i~vl~-~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVME-K 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGG--GGTTSSEEEEEE-T
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf 886698898987544344416513556477655598999999999999858-998999978899--998499999998-9
Q ss_pred CEEEEECCC
Q ss_conf 689993799
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 g~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=301.78 Aligned_cols=193 Identities=24% Similarity=0.366 Sum_probs=154.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983799999689998982898999813579998884068766---554178665444657888989999999650288
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~---~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~ 77 (1293)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++.... .++.++||+|++++|+ .||+|||.++.+....
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~ 106 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSV 106 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTSTTCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCCCCC-CCCCCCCCCCCCCCCH
T ss_conf 99999999998999999997357888---8899999999440024655352889824465578-4000352235755438
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 75222446856986520899726787999874200223100199999992995446753378865336623311468999
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~ 157 (1293)
++.+...+.+.. .-....++...+|.+|. .+..|||||||||+|||
T Consensus 107 -~~~~~~~~~~~~--------------------------------~~~i~~~~~~~~t~i~~-~g~~LSGGq~QRvalAR 152 (241)
T d2pmka1 107 -EKVIYAAKLAGA--------------------------------HDFISELREGYNTIVGE-QGAGLSGGQRQRIAIAR 152 (241)
T ss_dssp -HHHHHHHHHHTC--------------------------------HHHHTTSTTGGGSBCST-TTTCCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH--------------------------------HHHHHHHHCCHHHHCCC-CCCCCCHHHHHHHHHHH
T ss_conf -889999999755--------------------------------78887632013443278-78866988989875443
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 874698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
|++.+|+|++||||||+||+.++..+++.|+++.+ ++|+|+..|+. +..+.+|+|++|++|+++++|+++++..
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 153 ALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRL--STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSG--GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 44416513556477655598999999999999858--99899997889--9998499999998999999889999982
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-45 Score=297.43 Aligned_cols=196 Identities=22% Similarity=0.339 Sum_probs=158.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983799999689998982898999813579998884068766---554178665444657888989999999650288
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~---~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.+||.++.... .++.++||+|++.+|+ .||+||+.|+...+..
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~ 117 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPT 117 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCH
T ss_conf 99999999984999999986143787---6899889985311013788877654045650027-6346554542101302
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 75222446856986520899726787999874200223100199999992995446753378865336623311468999
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~ 157 (1293)
.+.....+.. ....-...+|++..+|.+|+ .+..||||||||++|||
T Consensus 118 ---~~~~~~~~~~-----------------------------~~~~~~i~~l~~g~~~~i~~-~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 118 ---MEEITAAAVK-----------------------------SGAHSFISGLPQGYDTEVDE-AGSQLSGGQRQAVALAR 164 (251)
T ss_dssp ---HHHHHHHHHH-----------------------------HTCHHHHHTSTTGGGCBCCS-SCSSSCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHH-----------------------------HHHHHHHHHCCCCCHHHHHC-CCCCCCHHHCEEEEEEE
T ss_conf ---7889999999-----------------------------98999998561211136751-67668954704899860
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 874698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
||+.+|+|++||||||+||+.++..+++.|+++.++.++|+|+..|+. +..+.+|+|++|++|+++++|+++++.+
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 445687078716757656853689999999997650698999995979--9998599999998999999889999985
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=4.2e-45 Score=299.68 Aligned_cols=211 Identities=27% Similarity=0.443 Sum_probs=167.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 79963599997894201235443443211010456616839999979996099999989699999814679999692179
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~ 774 (1293)
++++||+++++ +.+.+|+|||+.++|||++||+||||||||||+++|+|...+ .+|+|.+||.+..
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 79998899879------------998414225899859999999999999799999999996098--9877988998844
Q ss_pred H---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCC
Q ss_conf 0---00134489972699889999999999999970378899999999999999998399-------4322011269998
Q 000773 775 Q---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVEL-------ESLKDAIVGLPGV 844 (1293)
Q Consensus 775 ~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~~g~~~~ 844 (1293)
. ..+++.++||+|++.+++. |++||+.+.. ....+.++ +.+.++..++ .+..++.++.. .
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTT-S
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCC----CCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCC-C
T ss_conf 24678887436797566545785-3454301244----55542356----7789999975554203742101523687-8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCC
Q ss_conf 87798899999999999519977899599999999999999999999873899899992699899999985752102496
Q 000773 845 TGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 924 (1293)
Q Consensus 845 ~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g 924 (1293)
..||||||||++|||||+.+|+|++|||||++||+.++..+++.|++++ +|+|+|+++|++ +....+|++++|. +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l--~~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL--STIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH--HHHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCH--HHHHHCCEEEEEE-CC
T ss_conf 9879999999999999852998999658865569889999988788871-799899997879--9998499999998-99
Q ss_pred EEEEECCCC
Q ss_conf 899937999
Q 000773 925 QVIYSGPLG 933 (1293)
Q Consensus 925 ~~~~~g~~~ 933 (1293)
++++.|++.
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.4e-44 Score=293.66 Aligned_cols=193 Identities=25% Similarity=0.288 Sum_probs=167.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC--CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 9898379999968999898289899981357999888406876--65541786654446578889899999996502887
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF--VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~--~~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~~ 78 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.+..+. ..++.++||||++.+++++|++||+.|.+.+.+..
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~ 106 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 106 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999999999996698878---887999867244683988721867500154687866778889899861799
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 52224468569865208997267879998742002231001999999929954467533788653366233114689998
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~a 158 (1293)
.. +..+.++.+++.++|.+..+.++++ ||||||||++||+|
T Consensus 107 --------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 107 --------------------SS--------------EIEEMVERATEIAGLGEKIKDRVST-----YSKGMVRKLLIARA 147 (238)
T ss_dssp --------------------HH--------------HHHHHHHHHHHHHCCGGGGGSBGGG-----CCHHHHHHHHHHHH
T ss_pred --------------------HH--------------HHHHHHHHHHHHCCCHHHHHHHHHH-----CCHHHHHHHHHHHH
T ss_conf --------------------89--------------9999999999867978888504533-----79989899999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHHHH
Q ss_conf 7469818676379854128999999999999976179889999527984699720026885599089876710499999
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLEFF 237 (1293)
Q Consensus 159 L~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~~f 237 (1293)
|+.+|+|++|||||+|||+.++.++++.++++++ .|+|+|++.| ..+++..++|+|++|.+|++++.|+++++.+.+
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH-~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSH-NMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEEC-CHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 8659998873379889798999999999999996-5998999959-899999969999999899999992899998652
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=304.91 Aligned_cols=194 Identities=23% Similarity=0.321 Sum_probs=154.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC---CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9898379999968999898289899981357999888406876---6554178665444657888989999999650288
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEF---VPQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~---~~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~ 77 (1293)
.++|+||||||||||+++|+|.++|+ +|+|.+||.+++.. ..++.++||+|++.+|+. ||+||+.++......
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~ 105 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYT 105 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCCCCCC
T ss_conf 99999999997999999999960989---87798899884424678887436797566545785-345430124455542
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 75222446856986520899726787999874200223100199999992995446753378865336623311468999
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~ 157 (1293)
.. .....+ +.+.. .-....+++..+|.+|+ .+.+|||||||||+|||
T Consensus 106 ~~---~~~~~~------------------~~~~~-----------~~~~~~~~~~~~~~i~~-~g~~LSGGqkQRv~iAR 152 (242)
T d1mv5a_ 106 DE---DLWQVL------------------DLAFA-----------RSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIAR 152 (242)
T ss_dssp HH---HHHHHH------------------HHHTC-----------TTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHH
T ss_pred HH---HHHHHH------------------HHHHH-----------HHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHH
T ss_conf 35---677899------------------99975-----------55420374210152368-78987999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 874698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
||+.+|+|++||||||+||+.++..+++.|+++.+ ++|+|+..|+. +....+|+|++|++|+++++|+++++.+
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRL--STIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSH--HHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 98529989996588655698899999887888717--99899997879--9998499999998999999999999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.4e-45 Score=297.66 Aligned_cols=212 Identities=25% Similarity=0.357 Sum_probs=169.2
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
.++++|+++.++. ++..+|+|||+.+++||.+||+||||||||||+++|+|...+ .+|+|.+||.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCCCC
T ss_conf 7999988999299-----------997635332899859999999999998599999998621688--846898788012
Q ss_pred CH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCC
Q ss_conf 90---00134489972699889999999999999970378899999999999999998399432-------201126999
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESL-------KDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-------~~~~~g~~~ 843 (1293)
.. ..+++.++|++|++.++. .|+++++.+.. +...+.++ ++++++..++.+. .++.++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred CHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCC----CCCCCHHH----HHHHHHHHHHHHHHHHCCCCCHHHHCCC-
T ss_conf 11106654206879950254478-62024332057----22089999----9999999817999973554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECC
Q ss_conf 88779889999999999951997789959999999999999999999987389989999269989999998575210249
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++|||||+.+|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|+++ ....+|+|++|. +
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~--~~~~~D~v~vl~-~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVE-D 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG--GTTTCSEEEEEE-T
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf 898499999999999999549988995164445898899999999987522-788999988799--998599999998-9
Q ss_pred CEEEEECCC
Q ss_conf 689993799
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 g~~~~~g~~ 932 (1293)
|+++..|++
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.6e-43 Score=289.32 Aligned_cols=194 Identities=25% Similarity=0.380 Sum_probs=153.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983799999689998982898999813579998884068766---554178665444657888989999999650288
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~---~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~ 77 (1293)
.++|+||||||||||+++|+|.++|+ +|+|.+||.++.... .++.++||+|++.++.. |+++|+.++......
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~~~~~ 118 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEEYS 118 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCC
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCCCCCC-CHHHHHHHCCCCCCC
T ss_conf 99999999985999999986216888---46898788012111066542068799502544786-202433205722089
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 75222446856986520899726787999874200223100199999992995446753378865336623311468999
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~ 157 (1293)
.+.+.++++ . ... ...++ .|++..+|.+|+ .+..|||||||||+|||
T Consensus 119 ---~~~i~~a~~------------------~--------~~l-~~~i~--~l~~gl~t~~~~-~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 119 ---REQIEEAAR------------------M--------AYA-MDFIN--KMDNGLDTIIGE-NGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp ---HHHHHHHHH------------------T--------TTC-HHHHH--HSTTGGGSBCCT-TSCSSCHHHHHHHHHHH
T ss_pred ---HHHHHHHHH------------------H--------HHH-HHHHH--HCCCCCHHHHCC-CCCCCCHHHHHHHHHHH
T ss_conf ---999999999------------------9--------817-99997--355441014348-88984999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 874698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
||+.+|+|++||||||+||+.++..+++.|+++.+ ++|+|+..|+. +....+|+|++|.+|+++++|+++++++
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG--GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99549988995164445898899999999987522--78899998879--9998599999998999999889999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.2e-44 Score=291.96 Aligned_cols=211 Identities=26% Similarity=0.416 Sum_probs=170.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 67996359999789420123544344321101045661683999997999609999998969999981467999969217
Q 000773 694 AMSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 773 (1293)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~ 773 (1293)
.++++|++++++ .+.+.+|+|||+.+++||.+||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 16 ~I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 82 (255)
T d2hyda1 16 RIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNI 82 (255)
T ss_dssp CEEEEEEEECSC-----------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEEEC-----------CCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCEEC
T ss_conf 799998899959-----------9997606443899839989999889998099999999712786--300015399875
Q ss_pred CH---HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 90---0013448997269988999999999999997037889999999999999999839943-------2201126999
Q 000773 774 KQ---ETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELES-------LKDAIVGLPG 843 (1293)
Q Consensus 774 ~~---~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~~g~~~ 843 (1293)
.. ..+++.++||+|++.+++ .|++||+.+.. + ..+.++ +.++++..++.+ -.++.++..
T Consensus 83 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~~- 151 (255)
T d2hyda1 83 KDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGER- 151 (255)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGG-
T ss_pred CCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCHHH----HHHHHHHHCCHHHHHHCCCCCCCHHCCC-
T ss_conf 30788886341456510156899-87999985158----6-799999----9999999697999973624201033388-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECC
Q ss_conf 88779889999999999951997789959999999999999999999987389989999269989999998575210249
Q 000773 844 VTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 923 (1293)
Q Consensus 844 ~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~ 923 (1293)
...||||||||++|||+|+.+|++++|||||++||+.++..+.+.|+++.+ ++|+|+++|+++ ....+|++++|. +
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~--~~~~~D~ii~l~-~ 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLS--TITHADKIVVIE-N 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGG--GTTTCSEEEEEE-T
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf 898499999999999998559989998376544797799999999998753-888999968999--998599999998-9
Q ss_pred CEEEEECCC
Q ss_conf 689993799
Q 000773 924 GQVIYSGPL 932 (1293)
Q Consensus 924 g~~~~~g~~ 932 (1293)
|+++..|+.
T Consensus 228 G~iv~~G~~ 236 (255)
T d2hyda1 228 GHIVETGTH 236 (255)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=7e-45 Score=297.72 Aligned_cols=193 Identities=25% Similarity=0.383 Sum_probs=155.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983799999689998982898999813579998884068766---554178665444657888989999999650288
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV---PQKTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~---~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~ 77 (1293)
.++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++++|+. ||+|||.|+.....
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-Ti~eNi~~g~~~~~- 120 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTAT- 120 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCCCCC-CHHHHHHCCCCCCC-
T ss_conf 99998899980999999997127863---00015399875307888863414565101568998-79999851586799-
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 75222446856986520899726787999874200223100199999992995446753378865336623311468999
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~ 157 (1293)
-+.+.+++ +.+ ...+ ....|++..+|.+|+ .+.+||||||||++|||
T Consensus 121 ---~~~~~~al------------------~~~--------~l~~---~i~~lp~gl~t~i~~-~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 121 ---DEEVVEAA------------------KMA--------NAHD---FIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp ---HHHHHHHH------------------HHT--------TCHH---HHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHH
T ss_pred ---HHHHHHHH------------------HHH--------CCHH---HHHHCCCCCCCHHCC-CCCCCCHHHHHHHHHHH
T ss_conf ---99999999------------------996--------9799---997362420103338-88984999999999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 874698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 158 MIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 158 aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
|++.+|+|++||||||+||+.++..+++.|+.+.+ ++|+|+..|++ +....+|+|++|++|++++.|+++++.+
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~--~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRL--STITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSG--GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 98559989998376544797799999999998753--88899996899--9998599999998999999889999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.9e-44 Score=291.66 Aligned_cols=204 Identities=25% Similarity=0.340 Sum_probs=166.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9898379999968999898289899981357999888406876655----417866544465788898999999965028
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ----KTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~----~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++|.++.....+ ..++|++|++.+++.+||.||+.++...+.
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~ 108 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 108 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCC
T ss_conf 99999999984999999997797688---737999999664056999998338725776424788742321430133303
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87522244685698652089972678799987420022310019999999299544675337886533662331146899
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTG 156 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA 156 (1293)
.... ......... + ...+....++.+++.+++.+..|+.+++ |||||||||+||
T Consensus 109 ~~~~-------~~~~~~~~~-~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~Qrv~iA 162 (254)
T d1g6ha_ 109 ESPL-------NSLFYKKWI-P-------------KEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIG 162 (254)
T ss_dssp SCHH-------HHHHHCSSC-C-------------CCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHHH
T ss_pred CCCH-------HHHHHHCCC-C-------------CHHHHHHHHHHHHHHCCCCHHCCCCHHH-----CCCHHHHHHHHH
T ss_conf 4504-------566542135-3-------------2899999999998761963020595356-----991888899999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 9874698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 157 EMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 157 ~aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
|||+.+|++++|||||+|||+.++.++++.|++++. .|+|++++. |..+++.+++|+|++|.+|++++.|+++++.+
T Consensus 163 raL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vs-Hdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIE-HRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEC-SCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEE-CCHHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 999759272324397656999999999999999997-899899994-76999998699999996998999966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.9e-44 Score=292.57 Aligned_cols=190 Identities=25% Similarity=0.353 Sum_probs=158.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----CCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 989837999996899989828989998135799988840687665----5417866544465788898999999965028
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVP----QKTSAYISQNDVHVGEMTVKETLDFSARCLG 76 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~----~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~ 76 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... +..++|++|+..+++.+||+||+.+++....
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~ 110 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 99999999985999999996788888---038984244344660888887423556765545776369999998887327
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 875222446856986520899726787999874200223100199999992-9954467533788653366233114689
Q 000773 77 VGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKIL-GLDICKDTIVGDEMNRGISGGQKKRVTT 155 (1293)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~T~VG~~~~~gLSGGQKrRlsI 155 (1293)
..+ ..++.++.+++.+ +|.+..+..+++ |||||||||+|
T Consensus 111 ~~~-----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~-----LSGG~~Qrv~i 150 (240)
T d1ji0a_ 111 DKE-----------------------------------GIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAI 150 (240)
T ss_dssp CSS-----------------------------------HHHHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHHH
T ss_pred CHH-----------------------------------HHHHHHHHHHHHHHCHHHHHHCCHHH-----CCHHHHHHHHH
T ss_conf 888-----------------------------------99999999998741768887585433-----89999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 99874698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 156 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 156 A~aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
||||+.+|++++|||||+|||+.++.++++.|+++++ .|+|++++.| ..+++.+++|+|++|.+|++++.|+++++.+
T Consensus 151 AraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH-~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQ-NALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEES-CHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 9999829987400398867999999999999999996-8998999958-8999999699999998999999848999842
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.2e-43 Score=285.20 Aligned_cols=191 Identities=22% Similarity=0.292 Sum_probs=159.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC----------------CCCEEEEECCCCCCCCCCCH
Q ss_conf 98983799999689998982898999813579998884068766----------------55417866544465788898
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFV----------------PQKTSAYISQNDVHVGEMTV 64 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~----------------~~~~~~yv~Q~d~l~~~lTV 64 (1293)
+++|+||||||||||+++|+|..+|+ +|+|.++|.++.... .++.+|||+|++-+++.+||
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv 106 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 106 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHC
T ss_conf 99999899982999999997476678---997799999933677520000235176799974544899833231411010
Q ss_pred HHHHHHHHH-CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCC
Q ss_conf 999999965-0288752224468569865208997267879998742002231001999999929954-46753378865
Q 000773 65 KETLDFSAR-CLGVGTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDI-CKDTIVGDEMN 142 (1293)
Q Consensus 65 rE~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~T~VG~~~~ 142 (1293)
.||+.++.. ..+. +..+ ..+.+.++++.+||.+ ..+...+
T Consensus 107 ~env~~~~~~~~~~--------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~p~---- 148 (258)
T d1b0ua_ 107 LENVMEAPIQVLGL--------------------SKHD--------------ARERALKYLAKVGIDERAQGKYPV---- 148 (258)
T ss_dssp HHHHHHHHHHTTCC--------------------CHHH--------------HHHHHHHHHHHTTCCHHHHTSCGG----
T ss_pred CHHHHHHHHHHCCC--------------------CHHH--------------HHHHHHHHHHHCCCCHHHHCCCCC----
T ss_conf 21365657876299--------------------9899--------------999999999982995244306822----
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCC
Q ss_conf 33662331146899987469818676379854128999999999999976179889999527984699720026885599
Q 000773 143 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEG 222 (1293)
Q Consensus 143 ~gLSGGQKrRlsIA~aL~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G 222 (1293)
.|||||||||+|||||+.+|+++++||||+|||+.++.++++.|+++.+ .|+|+|+.. |...++..++|||++|.+|
T Consensus 149 -~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vt-Hdl~~~~~~adri~vm~~G 225 (258)
T d1b0ua_ 149 -HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT-HEMGFARHVSSHVIFLHQG 225 (258)
T ss_dssp -GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEEC-SCHHHHHHHCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEEE-CCHHHHHHHCCEEEEEECC
T ss_conf -0567788898999998439987885245556887888899876554103-688338994-8999999869999999799
Q ss_pred EEEEECCHHHHHH
Q ss_conf 0898767104999
Q 000773 223 QIVYQGPRERVLE 235 (1293)
Q Consensus 223 ~iv~~G~~~~l~~ 235 (1293)
++++.|+++++..
T Consensus 226 ~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 226 KIEEEGDPEQVFG 238 (258)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999849999983
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-43 Score=289.94 Aligned_cols=193 Identities=22% Similarity=0.350 Sum_probs=150.1
Q ss_pred CCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCH
Q ss_conf 44321101045661683999997999609999998969999981467999969217900013448997269988999999
Q 000773 718 DKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 797 (1293)
Q Consensus 718 ~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lTv 797 (1293)
+.+++|+|+|+.+++||++||+||||||||||+++|+|...+ .+|.|.++|. ++|++|+..+++. |+
T Consensus 47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~~-tv 113 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMPG-TI 113 (281)
T ss_dssp TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCSE-EH
T ss_pred CCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCE----------EEEEECCCCCCCC-EE
T ss_conf 997677375999859999999989998299999999579747--8828999999----------9998164302676-03
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99999999703788999999999999---999983994322011269998877988999999999995199778995999
Q 000773 798 KESLIYSAFLRLAKEVSKEDKIIFVE---EVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPT 874 (1293)
Q Consensus 798 ~e~l~~~~~l~~~~~~~~~~~~~~v~---~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpt 874 (1293)
+|++.+.. ...........+ .......+.+..++.++.. ...||||||||++|||+|+.+|+|++|||||
T Consensus 114 ~eni~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDEPt 186 (281)
T d1r0wa_ 114 KENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDSPF 186 (281)
T ss_dssp HHHHTTTS------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred ECCCCCCC------CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 21420333------4560579999999776999984612332355554-2377999999999999998696351333855
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCC
Q ss_conf 99999999999999999873899899992699899999985752102496899937999
Q 000773 875 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 875 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~~ 933 (1293)
++||+.+...+++.+......++|+|+++|++ +....+|++++|. +|++++.|++.
T Consensus 187 s~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~-~G~i~~~Gt~~ 242 (281)
T d1r0wa_ 187 GYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILH-QGSSYFYGTFS 242 (281)
T ss_dssp CSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEE-TTEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 44898999999999998862899999992528--9998599999998-99999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-41 Score=274.64 Aligned_cols=196 Identities=22% Similarity=0.345 Sum_probs=165.0
Q ss_pred CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCH---HCCCCEEEEECCCCCCCCCCC
Q ss_conf 32110104566168399999799960999999896999998146799996921790---001344899726998899999
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ---ETFARISGYCEQNDIHSPQVT 796 (1293)
Q Consensus 720 ~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~~~v~q~~~~~~~lT 796 (1293)
...|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... .......+|++|+.......+
T Consensus 12 ~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 715558888994898999998999809999999948879---95599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEE
Q ss_conf 9999999997037889999999999999999839943220112699988779889999999999951-------997789
Q 000773 797 VKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVA-------NPSIIF 869 (1293)
Q Consensus 797 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~-------~p~il~ 869 (1293)
+.+.+.+... . . .+.+.++++++.+++.+..+..+. .||||||||++||++|+. +|++++
T Consensus 89 v~~~~~~~~~---~-~----~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~lll 155 (231)
T d1l7vc_ 89 VWHYLTLHQH---D-K----TRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLL 155 (231)
T ss_dssp HHHHHHHHCS---C-T----TCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred HHHHHHHCCC---H-H----HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 9887641001---4-6----689999999986598767676844-----5699889999999999851713389988999
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCC
Q ss_conf 9599999999999999999999873899899992699899999985752102496899937999
Q 000773 870 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLG 933 (1293)
Q Consensus 870 lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~~ 933 (1293)
|||||+|||+.++..+.+.+++++++|.|||+++|+++ ++...+|++++|. +|++++.|++.
T Consensus 156 lDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ 217 (231)
T d1l7vc_ 156 LDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRRE 217 (231)
T ss_dssp ESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHH
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 71877778989999999999999867999999967799-9999799999997-99899988999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-41 Score=276.56 Aligned_cols=183 Identities=22% Similarity=0.315 Sum_probs=145.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 98983799999689998982898999813579998884068766554178665444657888989999999650288752
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~~~~ 80 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.++| .++||+|++++++. ||+||+.|+.... ..+
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~ 127 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMPG-TIKENIIFGVSYD--EYR 127 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCSE-EHHHHHTTTSCCC--HHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCCC-EEECCCCCCCCCC--CHH
T ss_conf 99999899982999999995797478---82899999----------99998164302676-0321420333456--057
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 22446856986520899726787999874200223100199999992995446753378865336623311468999874
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~aL~ 160 (1293)
++.+.+.+... .....+.+..++.+|+ .+..|||||||||+|||||+
T Consensus 128 ~~~~~~~~~~~--------------------------------~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~ 174 (281)
T d1r0wa_ 128 YKSVVKACQLQ--------------------------------QDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVY 174 (281)
T ss_dssp HHHHHHHTTCH--------------------------------HHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------------------------HHHHHCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHH
T ss_conf 99999997769--------------------------------9998461233235555-42377999999999999998
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 698186763798541289999999999999761798899995279846997200268855990898767104999
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPRERVLE 235 (1293)
Q Consensus 161 ~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~~~l~~ 235 (1293)
.+|+|++||||||+||+.++..+++.+..... .++|+|+..|+. +....+|+|++|.+|+++++|+++++..
T Consensus 175 ~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 175 KDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECHH--HHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 69635133385544898999999999998862-899999992528--9998599999998999999878999960
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.5e-38 Score=253.03 Aligned_cols=195 Identities=21% Similarity=0.311 Sum_probs=153.7
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCC
Q ss_conf 79963599997894201235443443211010456616839999979996099999989699999814679999692179
Q 000773 695 MSFDSVYYYVDMPPEMKEQGVAEDKLRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK 774 (1293)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~ 774 (1293)
++.+|+++.. + +.+|+++|+.+++||+++|+||||||||||+++|+|..++ .+|+|.+||.+..
T Consensus 3 lev~~ls~~y-------------~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i~ 66 (200)
T d1sgwa_ 3 LEIRDLSVGY-------------D-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPIT 66 (200)
T ss_dssp EEEEEEEEES-------------S-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGG
T ss_pred EEEEEEEEEE-------------C-CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEHH
T ss_conf 9999899993-------------9-9288420889859989999999997199999999662056--7788999989626
Q ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 00013448997269988999999999999997037889999999999999999839943220112699988779889999
Q 000773 775 QETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKR 854 (1293)
Q Consensus 775 ~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr 854 (1293)
. .+..++|++|+..+...+|++|++.+.+.++.. ...+++ +.+.++.+++.+..+ .+ ..||||||||
T Consensus 67 ~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~-~~-----~~LSgG~~qr 133 (200)
T d1sgwa_ 67 K--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNE----IMDALESVEVLDLKK-KL-----GELSQGTIRR 133 (200)
T ss_dssp G--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHHH----HHHHHHHTTCCCTTS-BG-----GGSCHHHHHH
T ss_pred H--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-CCCHHH----HHHHHHHCCCCCCCC-CC-----CCCCCCHHHH
T ss_conf 7--367089995013578882899999999975488-637999----999998748856301-26-----8689718888
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEEC
Q ss_conf 99999995199778995999999999999999999998738998999926998999999857521024
Q 000773 855 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 922 (1293)
Q Consensus 855 ~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 922 (1293)
++||++|+.+|++++|||||+|||+.++..+++.++++.+++.++++++|+. . ..+|.+..|.+
T Consensus 134 v~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~-l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-L---SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-C---TTSSEEEEGGG
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH-H---HHCCHHHHEEE
T ss_conf 9999988649989998686201699999999999999986799999999162-5---44161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-38 Score=255.22 Aligned_cols=184 Identities=26% Similarity=0.342 Sum_probs=153.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9898379999968999898289899981357999888406876655---4178665444657888989999999650288
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQ---KTSAYISQNDVHVGEMTVKETLDFSARCLGV 77 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~---~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~ 77 (1293)
+++|+||||||||||+++|+|.. |+ +|+|.++|.++.....+ ...+|++|+.......++.+++.++..-+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 100 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-- 100 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH--
T ss_conf 99999899980999999994887-99---5599999999986998999864024512135774420988764100146--
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 75222446856986520899726787999874200223100199999992995446753378865336623311468999
Q 000773 78 GTRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGE 157 (1293)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~ 157 (1293)
...+.++++++.++|.+..+..++ .||||||||++||+
T Consensus 101 -------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~ 138 (231)
T d1l7vc_ 101 -------------------------------------TRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAA 138 (231)
T ss_dssp -------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHH
T ss_conf -------------------------------------689999999986598767676844-----56998899999999
Q ss_pred HHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCH
Q ss_conf 8746-------981867637985412899999999999997617988999952798469972002688559908987671
Q 000773 158 MIVG-------PTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 230 (1293)
Q Consensus 158 aL~~-------~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~~ 230 (1293)
+++. +|+|++|||||+|||+.++..+++.|+++++ .|+|+|++.| ..+++.+.+|++++|.+|++++.|++
T Consensus 139 al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtH-dl~~~~~~~dri~vl~~G~iv~~G~~ 216 (231)
T d1l7vc_ 139 VVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSH-DLNHTLRHAHRAWLLKGGKMLASGRR 216 (231)
T ss_dssp HHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCC-CHHHHHHHCSBCCBEETTEECCCSBH
T ss_pred HHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEC-CHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 998517133899889997187777898999999999999986-7999999967-79999997999999979989998899
Q ss_pred HHHH
Q ss_conf 0499
Q 000773 231 ERVL 234 (1293)
Q Consensus 231 ~~l~ 234 (1293)
+++.
T Consensus 217 ~ev~ 220 (231)
T d1l7vc_ 217 EEVL 220 (231)
T ss_dssp HHHS
T ss_pred HHHH
T ss_conf 9981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6e-35 Score=234.97 Aligned_cols=169 Identities=20% Similarity=0.280 Sum_probs=135.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 98983799999689998982898999813579998884068766554178665444657888989999999650288752
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSARCLGVGTR 80 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~~lTVrE~l~f~~~~~~~~~~ 80 (1293)
+++|+||||||||||+++|+|.++|+ +|+|.+||.++.. .+..++|+||+..++..+|++|++.+.+...+...
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~- 102 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV- 102 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCC-
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCC-
T ss_conf 99999999971999999996620567---7889999896267--36708999501357888289999999997548863-
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 22446856986520899726787999874200223100199999992995446753378865336623311468999874
Q 000773 81 YELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEMIV 160 (1293)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~aL~ 160 (1293)
.+..+...++.+++.+. +..++ .||||||||++||++++
T Consensus 103 -----------------------------------~~~~~~~~l~~~~~~~~-~~~~~-----~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 103 -----------------------------------NKNEIMDALESVEVLDL-KKKLG-----ELSQGTIRRVQLASTLL 141 (200)
T ss_dssp -----------------------------------CHHHHHHHHHHTTCCCT-TSBGG-----GSCHHHHHHHHHHHHTT
T ss_pred -----------------------------------CHHHHHHHHHHCCCCCC-CCCCC-----CCCCCHHHHHHHHHHHH
T ss_conf -----------------------------------79999999987488563-01268-----68971888899999886
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECC
Q ss_conf 6981867637985412899999999999997617988999952798469972002688559
Q 000773 161 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSE 221 (1293)
Q Consensus 161 ~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~ 221 (1293)
.+|++++|||||+|||+.++..+++.|.++.+..+.++|.+ ||. +..+|.+.+|.+
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~-~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS-REE----LSYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEE-SSC----CTTSSEEEEGGG
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-ECH----HHHCCHHHHEEE
T ss_conf 49989998686201699999999999999986799999999-162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.50 E-value=5.1e-16 Score=114.97 Aligned_cols=79 Identities=18% Similarity=0.056 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHHHHEEECCCE
Q ss_conf 79889999999999951997789959999999999999999999987-38998999926998999999857521024968
Q 000773 847 LSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQ 925 (1293)
Q Consensus 847 lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~ 925 (1293)
+++|++++..+++++..+|+++++|||....+ ........+.+.. +.+.++++++|+.. .....|++..+. +|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--898636599871-999
Q ss_pred EEEEC
Q ss_conf 99937
Q 000773 926 VIYSG 930 (1293)
Q Consensus 926 ~~~~g 930 (1293)
++.-+
T Consensus 157 i~~v~ 161 (178)
T d1ye8a1 157 LIELT 161 (178)
T ss_dssp EEECC
T ss_pred EEEEC
T ss_conf 99989
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.43 E-value=6.6e-14 Score=101.56 Aligned_cols=157 Identities=15% Similarity=0.125 Sum_probs=99.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCE--EEEE-CCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 89837999996899989828989998135799988840687665541--7866-54446578889899999996502887
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKT--SAYI-SQNDVHVGEMTVKETLDFSARCLGVG 78 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~--~~yv-~Q~d~l~~~lTVrE~l~f~~~~~~~~ 78 (1293)
.+|.||||||||||+++|+|.+++. .|.+...+.+......+.. +.+. ++....... +..+...+
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK-FFTSKKLV-------- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG---EEEEEEEEEC------CCEEEEEETTCCEEEEEET-TCCCSSEE--------
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCC---CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--------
T ss_conf 9999899938999999998148888---64699877132888876531123366777887541-13455443--------
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 52224468569865208997267879998742002231001999999929954467533788653366233114689998
Q 000773 79 TRYELLSELARREKDAGIFPEAEIDLFMKATAMEGVESSLITDYTLKILGLDICKDTIVGDEMNRGISGGQKKRVTTGEM 158 (1293)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~T~VG~~~~~gLSGGQKrRlsIA~a 158 (1293)
.++ .+ +.....+++|+++|.+++++
T Consensus 71 ~~~------------------------------------------------------~~-~~~~~~~~~~~~~~~~l~~~ 95 (178)
T d1ye8a1 71 GSY------------------------------------------------------GV-NVQYFEELAIPILERAYREA 95 (178)
T ss_dssp TTE------------------------------------------------------EE-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHH------------------------------------------------------HC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 023------------------------------------------------------03-76256653201378999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECC
Q ss_conf 74698186763798541289999999999999761798899995279846997200268855990898767
Q 000773 159 IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIILLSEGQIVYQGP 229 (1293)
Q Consensus 159 L~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~iL~~G~iv~~G~ 229 (1293)
+..+|+++++|||....+ .....++.|.++.+..+.+++++.|+. +.....|++..+.+|+++.-++
T Consensus 96 ~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 96 KKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECCT
T ss_pred HHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHCEEEEEECCEEEEECC
T ss_conf 740997423027773100--457999999987505797899997447--7898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=1.1e-09 Score=74.79 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEE
Q ss_conf 87798899999999999----51997789959999999999999999999987389989999269989999998575210
Q 000773 845 TGLSIEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 845 ~~lSgGerkr~~ia~~l----~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
..+|+|||+...++..+ ..++++++.|||-++|++.....+.+.|+..++ +.-+|+|+|.|. +.+.+|++..+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEEE
T ss_conf 102577766777776655654226744554320335797899999999998554-887999989889--99732428999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=6e-09 Score=70.09 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCCCCCCCHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEE
Q ss_conf 3366233114689998----746981867637985412899999999999997617988999952798469972002688
Q 000773 143 RGISGGQKKRVTTGEM----IVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIIL 218 (1293)
Q Consensus 143 ~gLSGGQKrRlsIA~a----L~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~i 218 (1293)
..+|+|||+...++.. ....++++++|||-++||+.....+.+.|+..++ +.-+|+++|. +++++.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHs--p~~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHN--KIVMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCC--TTGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECC--HHHHHHCCCEEE
T ss_conf 102577766777776655654226744554320335797899999999998554--8879999898--899973242899
Q ss_pred --ECCC
Q ss_conf --5599
Q 000773 219 --LSEG 222 (1293)
Q Consensus 219 --L~~G 222 (1293)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEECC
T ss_conf 999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=2.7e-09 Score=72.36 Aligned_cols=74 Identities=16% Similarity=0.203 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEE
Q ss_conf 87798899999999999----51997789959999999999999999999987389989999269989999998575210
Q 000773 845 TGLSIEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 920 (1293)
Q Consensus 845 ~~lSgGerkr~~ia~~l----~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 920 (1293)
..+|||||.++++|..+ ..++++++||||+++||+.....+.+.|++++..+.-+|+++|+| .+....|+.+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=5.9e-09 Score=70.18 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=59.8
Q ss_pred CCCCCCCCHHHHHHHH--H--HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEE
Q ss_conf 3366233114689998--7--46981867637985412899999999999997617988999952798469972002688
Q 000773 143 RGISGGQKKRVTTGEM--I--VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHVTDATILMSLLQPAPETFDLFDDIIL 218 (1293)
Q Consensus 143 ~gLSGGQKrRlsIA~a--L--~~~p~IllLDEPTSgLD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~~~~~lfD~I~i 218 (1293)
..+|||||.++++|.. + +.++++++||||+++||+..+..+.+.|++++. .+.-+|+++|+| ++...+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCH--HHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728-998899995878--99973661799
Q ss_pred E
Q ss_conf 5
Q 000773 219 L 219 (1293)
Q Consensus 219 L 219 (1293)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.09 E-value=0.00018 Score=41.67 Aligned_cols=60 Identities=8% Similarity=0.178 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 999999999995199778995999999999999999-99999873899899992699899999
Q 000773 851 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPSIDIFE 912 (1293)
Q Consensus 851 erkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~-~~l~~~~~~g~tvi~~~H~~~~~~~~ 912 (1293)
|-++++-....+.+.+++++||..+|-|+.....+. .+++.+.+.+..+++++|.. ++..
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~ 161 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTA 161 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHT
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHH
T ss_conf 678898775028977278554545686233200258888888862376137865202--3332
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.95 E-value=2.6e-05 Score=47.06 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=26.9
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECC
Q ss_conf 46981867637985412899999999-9999976179889999527
Q 000773 160 VGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHVTDATILMSLLQ 204 (1293)
Q Consensus 160 ~~~p~IllLDEPTSgLD~~ta~~i~~-~L~~l~~~~g~tvI~ti~q 204 (1293)
.+...++++||..+|=|+..+..+.. .++.+.+ .+..+++++|.
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~ 156 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHY 156 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCC
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEEC
T ss_conf 8977278554545686233200258888888862-37613786520
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=3.3e-05 Score=46.37 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEECCCC
Q ss_conf 8999999999995199778995999999999999999-999998738-998999926998
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDT-GRTVVCTIHQPS 907 (1293)
Q Consensus 850 Gerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~-~~l~~~~~~-g~tvi~~~H~~~ 907 (1293)
.|-+|++-......+.+++++||+.+|-++.....+. ..++.+... +..+++++|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=6e-05 Score=44.77 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=10.1
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 399999799960999999896
Q 000773 734 VLAALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~ 754 (1293)
..+.|-|||.+||||+|+.++
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
T ss_conf 399995467313689999879
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.70 E-value=3.6e-05 Score=46.17 Aligned_cols=156 Identities=17% Similarity=0.102 Sum_probs=72.3
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC--CCCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 110104566168399999799960999999896999--998146799996921790001344899726998899999999
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK--TGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKE 799 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~--~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 799 (1293)
-|+++.+-++||+++.|.|++|+||||++.-++-.. ..+. .+.|+.- +++..+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-------------------~v~~~s~------E~~~~~ 78 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-------------------KVGLAML------EESVEE 78 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC-------------------CEEEEES------SSCHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------------------CEEEEEE------CCCHHH
T ss_conf 688874697898089999479997999999999726553366-------------------3457640------111135
Q ss_pred HHHH-HHHH-CCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9999-9970-378899999999-----99999999839943220112699988779889999999999951997789959
Q 000773 800 SLIY-SAFL-RLAKEVSKEDKI-----IFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDE 872 (1293)
Q Consensus 800 ~l~~-~~~l-~~~~~~~~~~~~-----~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDE 872 (1293)
...- .+.. ..+.......+. ...++..+.+.-....... +........+.....-...--.+|+++++|-
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~ 155 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLY---DSFAEAETDRLLAKLAYMRSGLGCDVIILDH 155 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEE---CCC-CCCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE---CCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 7769999864587101012222214567788898874035214662---1433106899999865432136762599705
Q ss_pred CC-----CCCC--HHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 99-----9999--99999999999998738-9989999269
Q 000773 873 PT-----SGLD--ARAAAIVMRTVRNTVDT-GRTVVCTIHQ 905 (1293)
Q Consensus 873 pt-----sgLD--~~~~~~i~~~l~~~~~~-g~tvi~~~H~ 905 (1293)
-+ .+-+ ......++..++.++++ +++|++++|-
T Consensus 156 l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 42120346544306778999999999765016552031035
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.43 E-value=0.0024 Score=34.61 Aligned_cols=123 Identities=19% Similarity=0.140 Sum_probs=66.2
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCC-CHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 045661683999997999609999998969999981467999969217-9000134489972699889999999999999
Q 000773 726 VTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK-KQETFARISGYCEQNDIHSPQVTVKESLIYS 804 (1293)
Q Consensus 726 vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~-~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 804 (1293)
+...++.+.-+.|.|+.||||||+|++|.+..++.. --+.+...+- .-...........
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~--rivtiEd~~El~l~~~~~~~~~~~------------------ 218 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE--RIISIEDTEEIVFKHHKNYTQLFF------------------ 218 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC--CEEEEESSCCCCCSSCSSEEEEEC------------------
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC--CEEECCCHHHHHCCCCCCCCEECC------------------
T ss_conf 999998378889994035662578999865301456--233113226551111245410014------------------
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf 97037889999999999999999839943220112699988779889999999999951997789959999999999999
Q 000773 805 AFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 884 (1293)
Q Consensus 805 ~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~ 884 (1293)
..+++-.+ .+-.+|=.+|+.++++|--.+ ++. .
T Consensus 219 ---------------------------------------~~~~~~~~----ll~~~lR~~pd~iivgEiR~~---ea~-~ 251 (323)
T d1g6oa_ 219 ---------------------------------------GGNITSAD----CLKSCLRMRPDRIILGELRSS---EAY-D 251 (323)
T ss_dssp ---------------------------------------BTTBCHHH----HHHHHTTSCCSEEEESCCCST---HHH-H
T ss_pred ---------------------------------------CCCHHHHH----HHHHHHCCCCCCCCCCCCCCH---HHH-H
T ss_conf ---------------------------------------65424999----999974349985457866746---599-9
Q ss_pred HHHHHHHHHHCCC-EEEEEECCCCHHHHHHHHHHHEEE
Q ss_conf 9999999873899-899992699899999985752102
Q 000773 885 VMRTVRNTVDTGR-TVVCTIHQPSIDIFEAFDELLLLK 921 (1293)
Q Consensus 885 i~~~l~~~~~~g~-tvi~~~H~~~~~~~~~~d~v~~l~ 921 (1293)
+ ++.+ ..|. -++.|+|-.+ ....++++.-|.
T Consensus 252 ~---l~a~-~tGh~g~~tT~Ha~s--~~~a~~Rl~~l~ 283 (323)
T d1g6oa_ 252 F---YNVL-CSGHKGTLTTLHAGS--SEEAFIRLANMS 283 (323)
T ss_dssp H---HHHH-HTTCSCEEEEECCSS--HHHHHHHHHHHH
T ss_pred H---HHHH-HHCCCCEEEEECCCC--HHHHHHHHHHHC
T ss_conf 9---9999-816985799878799--999999999852
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.0012 Score=36.48 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=70.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHHHHH-HHHHHC
Q ss_conf 6168399999799960999999896999998146799996921790001344899726998899999999999-999703
Q 000773 730 FRPGVLAALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLI-YSAFLR 808 (1293)
Q Consensus 730 i~~G~~~ai~G~sGaGKtTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~-~~~~l~ 808 (1293)
+.||+++.|.|++|+|||||+.-|+-....+ .-. .+.... ....+.|+.-++ +..+... +.+..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g----~~~-~~~~~~---~~~~vl~~~~E~------~~~~~~~Rl~~~~- 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGG----PDL-LEVGEL---PTGPVIYLPAED------PPTAIHHRLHALG- 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTC----CCT-TCCCCC---CCCCEEEEESSS------CHHHHHHHHHHHH-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CCC-CCCCCC---CCCCEEEEECCC------HHHHHHHHHHHHH-
T ss_conf 5589589999289998999999999999769----972-111235---787368985123------4999999999986-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCHHHHH
Q ss_conf 7889999999999999999839943220112699988779889999999999951997789959999-----99999999
Q 000773 809 LAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTS-----GLDARAAA 883 (1293)
Q Consensus 809 ~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpts-----gLD~~~~~ 883 (1293)
........ ......+.+....+.. ........+.-......+++++++|.-+. --|.....
T Consensus 91 --~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~ 156 (274)
T d1nlfa_ 91 --AHLSAEER----QAVADGLLIQPLIGSL--------PNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMA 156 (274)
T ss_dssp --TTSCHHHH----HHHHHHEEECCCTTSC--------CCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --HCCCHHHH----HCCCCCCEECCCCCCC--------CHHHHHHHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHH
T ss_conf --23686665----3123332321456742--------035789999998875267658962813542266523225689
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf 999999998738-99899992699
Q 000773 884 IVMRTVRNTVDT-GRTVVCTIHQP 906 (1293)
Q Consensus 884 ~i~~~l~~~~~~-g~tvi~~~H~~ 906 (1293)
.++..++.+++. +++++++.|..
T Consensus 157 ~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 157 QVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 999887777644797540131005
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=8e-05 Score=43.95 Aligned_cols=27 Identities=26% Similarity=0.593 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 683999997999609999998969999
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGRKT 758 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~~~ 758 (1293)
+|+.++++|+||+|||||+|.|.+...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf 698089978898778888773053555
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.24 E-value=0.004 Score=33.22 Aligned_cols=16 Identities=13% Similarity=0.121 Sum_probs=6.9
Q ss_pred EEEEECCCEEEEECCC
Q ss_conf 4566168399999799
Q 000773 727 TSAFRPGVLAALMGVS 742 (1293)
Q Consensus 727 s~~i~~G~~~ai~G~s 742 (1293)
+..++-|..+.++.|+
T Consensus 100 ~a~Lp~G~Rv~~v~~p 115 (323)
T d1g6oa_ 100 SSNLANGERVQIVLSP 115 (323)
T ss_dssp EEECTTSCEEEEECTT
T ss_pred EEEECCCEEEEEECCC
T ss_conf 6772685389982467
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.22 E-value=0.00013 Score=42.65 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 898379999968999898289899981357999
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEIT 34 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~ 34 (1293)
++++|+||.|||||+|.|.|...- ..|+|.
T Consensus 98 ~~~~G~SGVGKSTLiN~L~~~~~~---~T~~vs 127 (225)
T d1u0la2 98 STMAGLSGVGKSSLLNAINPGLKL---RVSEVS 127 (225)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred EEEECCCCCCHHHHHHHHCCHHHH---HCCCCC
T ss_conf 899788987788887730535550---106842
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.19 E-value=0.0035 Score=33.57 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=38.3
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHE
Q ss_conf 9999995199778995999999999999999999998738998999926998999999857521
Q 000773 856 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 919 (1293)
Q Consensus 856 ~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 919 (1293)
.+..+|=.+|++++..|.. |..++...+ +.+..|+.|+.|.|-.+ .+..+++++-
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl~~ 273 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRLRD 273 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHHHH
T ss_conf 9999984138889845768---759999999----99724985899833676--6766543210
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.97 E-value=0.00026 Score=40.73 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399999799960999999896999
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
|+++.|+||||||||||.+.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.87 E-value=6.8e-05 Score=44.39 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68399999799960999999896999
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.|+.+.++|+||+|||||+|.|.+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 35649998778734878987515176
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.85 E-value=0.0051 Score=32.52 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=23.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6616839999979996099999989699
Q 000773 729 AFRPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 729 ~i~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.-.|+-++.+.||+||||||++..+...
T Consensus 154 ~~~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 154 IKRPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8641054898767877744779998666
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.0002 Score=41.40 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=16.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+++|+|++|||||||++.|+.++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.81 E-value=0.00015 Score=42.22 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
++++|+||+|||||+|+|.|...
T Consensus 100 ~vl~G~SGVGKSSLiN~L~~~~~ 122 (231)
T d1t9ha2 100 TVFAGQSGVGKSSLLNAISPELG 122 (231)
T ss_dssp EEEEESHHHHHHHHHHHHCC---
T ss_pred EEEECCCCCCHHHHHHHHCCHHH
T ss_conf 99987787348789875151767
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00043 Score=39.33 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+++|.|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.76 E-value=0.00047 Score=39.07 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68399999799960999999896999
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.0006 Score=38.42 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68399999799960999999896999
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.|.++.|+||||+|||||.+.|..+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=3.2e-05 Score=46.44 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=27.4
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1101045661683999997999609999998969
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
-.++.++.+.+| ++.|+|+|||||||+|++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.00063 Score=38.27 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++|+|++|+|||||+|.|.|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.56 E-value=0.00053 Score=38.78 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=18.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983799999689998982898
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+++|+||.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.56 E-value=0.00056 Score=38.59 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+|++|+|||||++.|.|+-
T Consensus 26 I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9998999987999999852987
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00082 Score=37.55 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 168399999799960999999896999
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.50 E-value=0.00057 Score=38.54 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=11.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
+++|+|++|||||||++.|..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999980999989999999999
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.49 E-value=0.016 Score=29.40 Aligned_cols=150 Identities=15% Similarity=0.054 Sum_probs=69.0
Q ss_pred CCCCE-EEEEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 11010-456616839999979996099999989699-9998146799996921790001344899726998899999999
Q 000773 722 LLNEV-TSAFRPGVLAALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKE 799 (1293)
Q Consensus 722 iL~~v-s~~i~~G~~~ai~G~sGaGKtTLl~~l~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e 799 (1293)
-|+++ .|-+++|+++.|.|++|+|||+|..-++.. .. .+ ...+.|+.-+ .+.++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~----~~--------------~~~~~~~s~e------~~~~~ 69 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII----EF--------------DEPGVFVTFE------ETPQD 69 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH----HH--------------CCCEEEEESS------SCHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH----HC--------------CCCCCCCCCC------CCHHH
T ss_conf 798855689969839999947999999999999999998----56--------------8874201266------79999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHH--HCCCEEEEECCCCC
Q ss_conf 999999703788999999999999999983994322011269998877988999-999999995--19977899599999
Q 000773 800 SLIYSAFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRK-RLTIAVELV--ANPSIIFMDEPTSG 876 (1293)
Q Consensus 800 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerk-r~~ia~~l~--~~p~il~lDEptsg 876 (1293)
......... .... .................. ........... .+.-....+ .+|+++++|--+.-
T Consensus 70 ~~~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l 137 (242)
T d1tf7a1 70 IIKNARSFG----WDLA-------KLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSV 137 (242)
T ss_dssp HHHHHGGGT----CCHH-------HHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTT
T ss_pred HHHHHHHCC----CCHH-------HHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999849----9848-------988714302444210335-4444302458999999999988631222002078899
Q ss_pred C----CHH-HHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9----999-999999999998738998999926998
Q 000773 877 L----DAR-AAAIVMRTVRNTVDTGRTVVCTIHQPS 907 (1293)
Q Consensus 877 L----D~~-~~~~i~~~l~~~~~~g~tvi~~~H~~~ 907 (1293)
. +.. ....+...++..++.+++++++.|...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 138 FQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 876057267899999999999863971688421025
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.011 Score=30.51 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=33.6
Q ss_pred HHHCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 87469818676379854-----1289999999999999761798899995279
Q 000773 158 MIVGPTKTLFMDEISTG-----LDSSTTYQIVKCLQQIVHVTDATILMSLLQP 205 (1293)
Q Consensus 158 aL~~~p~IllLDEPTSg-----LD~~ta~~i~~~L~~l~~~~g~tvI~ti~qp 205 (1293)
....+++++++|.-+.- -|......+...|+.+++..+.++++. ||.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v-~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFL-HHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEE-EEC
T ss_pred HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHH-HHC
T ss_conf 7526765896281354226652322568999988777764479754013-100
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.40 E-value=0.0013 Score=36.21 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=25.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCC
Q ss_conf 989837999996899989828989998135799988840
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYR 39 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~ 39 (1293)
+.+|.||+||||||+.+.|+.++.. --+.+++..
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg~-----~~~~~~~d~ 39 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPGV-----PKVHFHSDD 39 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSS-----CEEEECTTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-----CEEEECHHH
T ss_conf 9999889999889999999999599-----979906899
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.00054 Score=38.69 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|+|||||||||+.+.|..+.+
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989999999999999984589
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00011 Score=43.20 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=18.5
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 989837999996899989828
Q 000773 1 MTLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G 21 (1293)
+|+|+|+|||||||+|.+|.-
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 089988999987999999999
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.35 E-value=0.00097 Score=37.10 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
++++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.35 E-value=0.0012 Score=36.61 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=17.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799960999999896999
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+.++|.||+|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.33 E-value=0.0014 Score=35.99 Aligned_cols=27 Identities=26% Similarity=0.541 Sum_probs=20.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 168399999799960999999896999
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
++|-.+.|.||+||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.27 E-value=0.00058 Score=38.49 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=24.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 898379999968999898289899981357999888
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG 37 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG 37 (1293)
..|+|++|||||||++.|..++...+..-|.|.-++
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 999809999899999999999986798379998316
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.27 E-value=0.0014 Score=35.99 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 168399999799960999999896999
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+.|.++.|.|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.25 E-value=0.013 Score=30.04 Aligned_cols=137 Identities=17% Similarity=0.116 Sum_probs=68.1
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCEEEEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 04566168399999799960999999896999-99814679999692179000134489972699889999999999999
Q 000773 726 VTSAFRPGVLAALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVKESLIYS 804 (1293)
Q Consensus 726 vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~-~~~~~~G~i~i~g~~~~~~~~~~~~~~v~q~~~~~~~lTv~e~l~~~ 804 (1293)
+.|-+++|.++.|.|++|+|||+|..-++... ..+ ..+.|+.-+ .+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-------------------~~~~~is~e------~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANK-------------------ERAILFAYE------ESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-------------------CCEEEEESS------SCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-------------------CCCCEEECC------CCHHHHHHHH
T ss_conf 568986984999991899999999999999998723-------------------244112126------7999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHH
Q ss_conf 97037889999999999999999839943220112699988779889999999999-951997789959999---99999
Q 000773 805 AFLRLAKEVSKEDKIIFVEEVMDLVELESLKDAIVGLPGVTGLSIEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDAR 880 (1293)
Q Consensus 805 ~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~-l~~~p~il~lDEpts---gLD~~ 880 (1293)
.... ....+ +...+.....+... ......+. .-.+..+ --.+|++++.|--+. +.+..
T Consensus 74 ~~~~----~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YSWG----MDFEE--------MERQNLLKIVCAYP-----ESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HTTS----CCHHH--------HHHTTSEEECCCCG-----GGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HHCC----CCHHH--------HHHCCCEEEEEEEC-----CHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 9829----98699--------85458617997300-----01017999-9999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECC
Q ss_conf 9999999999987-389989999269
Q 000773 881 AAAIVMRTVRNTV-DTGRTVVCTIHQ 905 (1293)
Q Consensus 881 ~~~~i~~~l~~~~-~~g~tvi~~~H~ 905 (1293)
........+...+ +.+.+++++.|.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~ 161 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTS 161 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 99999999999999869839999856
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0013 Score=36.24 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|+|++||||||+.+.|+.++.
T Consensus 8 iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989999898999999999869
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.12 E-value=0.0017 Score=35.54 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.+|++|++|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.11 E-value=0.0012 Score=36.53 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|.||+|||||||.+.|+..+.
T Consensus 10 I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 10 VAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999989999999999849
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0014 Score=36.03 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|+||||+||+||.+.|.-..+
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999999999986398
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.09 E-value=0.0017 Score=35.57 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|++|+|||||+|.|.|+
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998899999999689
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.09 E-value=0.0016 Score=35.64 Aligned_cols=18 Identities=61% Similarity=0.724 Sum_probs=8.8
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999689998982
Q 000773 3 LLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~ 20 (1293)
+|+||+||||||+.+.|+
T Consensus 8 ~i~G~pGsGKTTia~~La 25 (173)
T d1rkba_ 8 LLTGTPGVGKTTLGKELA 25 (173)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 898999999899999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.0014 Score=36.08 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
++|+|++|+|||||++.|.|.
T Consensus 6 V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 6 IIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998899999999679
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.06 E-value=0.0021 Score=34.94 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
-+||+|++|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.05 E-value=0.0016 Score=35.73 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
-++|+|++|+|||||+|.|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.04 E-value=0.0017 Score=35.50 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++|+|++|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0018 Score=35.34 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799960999999896999
Q 000773 736 AALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+.|+|||||||+||.+.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.03 E-value=0.002 Score=35.04 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+|.+|+|||||+|.|.|+.
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999986999999985898
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.02 E-value=0.011 Score=30.32 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCCCCCH--------HHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 69818676379854128--------999999999999976179889999527984
Q 000773 161 GPTKTLFMDEISTGLDS--------STTYQIVKCLQQIVHVTDATILMSLLQPAP 207 (1293)
Q Consensus 161 ~~p~IllLDEPTSgLD~--------~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~ 207 (1293)
.+++++++|-.+ -+++ .....+...|+.++++.+.+|++. +|+..
T Consensus 146 ~~~~~vvID~l~-~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~-~q~~r 198 (277)
T d1cr2a_ 146 LGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVI-CHLKN 198 (277)
T ss_dssp TCCSEEEEEEEE-C----------CHHHHHHHHHHHHHHHHHCCEEEEE-EECC-
T ss_pred CCCCEEEECCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE-CCCCC
T ss_conf 676259970542-120346544306778999999999765016552031-03563
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.02 E-value=0.001 Score=36.92 Aligned_cols=20 Identities=45% Similarity=0.602 Sum_probs=9.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
++|+|++++|||||+|.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.01 E-value=0.0016 Score=35.74 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=17.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799960999999896999
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.00 E-value=0.0019 Score=35.17 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|+|.+|+|||||+|+|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.99 E-value=0.0017 Score=35.58 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=13.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999997999609999998969
Q 000773 734 VLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.98 E-value=0.0021 Score=34.92 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
++||-|++|||||||.+.|+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.97 E-value=0.0015 Score=35.92 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999997999609999998969999
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGRKT 758 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~~~ 758 (1293)
...+.+.||+|+|||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97999889799889999999999865
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.0026 Score=34.34 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.96 E-value=0.0022 Score=34.86 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|+|++|+|||||++.|+|...
T Consensus 3 V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999989999999967775
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0022 Score=34.85 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+.|.||+|+|||||++.++..+
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899971999999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0024 Score=34.64 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=26.5
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 456616839999979996099999989699
Q 000773 727 TSAFRPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 727 s~~i~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.|-+++|+++.|.||+|+|||||..-++..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 589859979999958999999999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0028 Score=34.18 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=13.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979996099999989699
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
..+.|+||||+||+||++.|..+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
T ss_conf 71999998999999999999970
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.94 E-value=0.0026 Score=34.43 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=18.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898379999968999898289
Q 000773 1 MTLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~ 22 (1293)
+..|.|++||||||+.+.|...
T Consensus 4 lIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999999999999995
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0019 Score=35.17 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++|+|++|+|||||++.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.91 E-value=0.0031 Score=33.91 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999997999609999998969999
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGRKT 758 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~~~ 758 (1293)
.+++.|.|++||||||+-+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0019 Score=35.21 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|+||||+||+||++.|..+.+
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999899999999999997097
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0022 Score=34.85 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979996099999989699
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+.+.|.||+|+|||||++.++..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 69999889997199999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0025 Score=34.54 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|+|||||||+||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.90 E-value=0.0015 Score=35.88 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
-+||+|++++|||||+|.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.89 E-value=0.0023 Score=34.67 Aligned_cols=21 Identities=48% Similarity=0.624 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999979996099999989699
Q 000773 736 AALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+.|+||||||||||.+.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.85 E-value=0.0018 Score=35.40 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=15.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999997999609999998969
Q 000773 734 VLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++.|+||+||||||+-+.|+.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 4899989999988999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.85 E-value=0.0029 Score=34.09 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|.||+||||||+.+.|+..+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899989999998999999999809
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.003 Score=34.01 Aligned_cols=25 Identities=40% Similarity=0.760 Sum_probs=18.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399999799960999999896999
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
|=.++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.84 E-value=0.0033 Score=33.68 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
++|+|++|+|||||+++|.|.-
T Consensus 11 V~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999997787
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0035 Score=33.59 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|.+++|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.81 E-value=0.0026 Score=34.41 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|.||+||||||+.+.|+-+++
T Consensus 8 I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 8 ILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99982899988999999999858
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0028 Score=34.17 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=24.9
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1101045661683999997999609999998969
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
+|+.+.-.-...-.+||.||+|||||||++.|..
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998653169832897438999989999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.80 E-value=0.0035 Score=33.57 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++++|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.79 E-value=0.0019 Score=35.21 Aligned_cols=21 Identities=38% Similarity=0.611 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
++|+|++++|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.75 E-value=0.0021 Score=34.91 Aligned_cols=24 Identities=38% Similarity=0.339 Sum_probs=20.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|-|++|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.75 E-value=0.0031 Score=33.90 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+|++|+|||||++.|.|..
T Consensus 8 I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 8 VAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999996888
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.74 E-value=0.0036 Score=33.45 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|.|++||||||+.+.|+-+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899998989999999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.72 E-value=0.0028 Score=34.14 Aligned_cols=22 Identities=45% Similarity=0.785 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|++++|||||++.|+|.-
T Consensus 4 I~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996888
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.71 E-value=0.0018 Score=35.41 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+..|.|++||||||+.+.|+.++.
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989999998999999999728
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.71 E-value=0.0027 Score=34.30 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979996099999989699
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
++++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0033 Score=33.72 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+|.+++|||||+|+|.|.-
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999799998999999995898
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.69 E-value=0.038 Score=26.97 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=37.4
Q ss_pred CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEEEECCC---------CHHHHHHCCCEEEEC
Q ss_conf 698186763798541---289999999999999761798899995279---------846997200268855
Q 000773 161 GPTKTLFMDEISTGL---DSSTTYQIVKCLQQIVHVTDATILMSLLQP---------APETFDLFDDIILLS 220 (1293)
Q Consensus 161 ~~p~IllLDEPTSgL---D~~ta~~i~~~L~~l~~~~g~tvI~ti~qp---------~~~~~~lfD~I~iL~ 220 (1293)
..+++++.|..+.-+ +..........|.+++++.+.+++++.|.+ .......+|.++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 088533220431430489999999999999999998698399998567512554457764046421699999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.69 E-value=0.0033 Score=33.71 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.+.|+||+||||||+-+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.0039 Score=33.26 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=10.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
++||-|++||||||+-+.|+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989997879999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.64 E-value=0.0036 Score=33.47 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|+|||||||+|+.+.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.63 E-value=0.0024 Score=34.56 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999979996099999989699
Q 000773 736 AALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+||+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.0029 Score=34.06 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399999799960999999896999
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
-.++.|+||+||||||+-+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0028 Score=34.18 Aligned_cols=26 Identities=42% Similarity=0.456 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68399999799960999999896999
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.|.++.|+|++||||||+-+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.58 E-value=0.0029 Score=34.11 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++|+|++|+|||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999678
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0039 Score=33.28 Aligned_cols=20 Identities=45% Similarity=0.527 Sum_probs=9.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
+.|.||+||||||+-+.|+.
T Consensus 5 I~l~G~~GsGKSTvak~La~ 24 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQ 24 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999999999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.55 E-value=0.0035 Score=33.57 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.+.|+||+||||||+-+.|+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999988999998999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.54 E-value=0.0028 Score=34.16 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=26.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCEEEEEEEC
Q ss_conf 168399999799960999999896999-998146799996
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIRIS 769 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~~-~~~~~~G~i~i~ 769 (1293)
...-.++|.||+|||||||++.|.... ..+..-|-+.+|
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9815986117998889999999999876368751344346
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.47 E-value=0.0039 Score=33.27 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999979996099999989699
Q 000773 736 AALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+||+|+..||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.47 E-value=0.0048 Score=32.71 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983799999689998982898
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+.+|+||+||||||+.+.|+-.+
T Consensus 8 iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999997
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.46 E-value=0.0058 Score=32.16 Aligned_cols=26 Identities=46% Similarity=0.538 Sum_probs=20.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 16839999979996099999989699
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
++|-.+.|+||+||||||.-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0026 Score=34.40 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|.||+|||||||++.|...+.
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97438999989999999999997
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.44 E-value=0.0043 Score=33.00 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+||+||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889999989999999998
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.43 E-value=0.003 Score=34.00 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|++.||||||++.|.+.
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999969985499999999823
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0038 Score=33.31 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=11.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
++.|+||+||||||.-+.|+.
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999998999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.41 E-value=0.0032 Score=33.81 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|+|++|+|||||++.+.+...
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999967887
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.39 E-value=0.005 Score=32.56 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
=+.++||+|+|||-|.+.||+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47998999988999999999873
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.36 E-value=0.0048 Score=32.67 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+|++.||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.35 E-value=0.0041 Score=33.10 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1683999997999609999998969
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
+.-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.32 E-value=0.0063 Score=31.96 Aligned_cols=20 Identities=45% Similarity=0.526 Sum_probs=10.4
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999968999898289
Q 000773 3 LLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G~ 22 (1293)
+|+|+..+|||||++.|+|.
T Consensus 9 aiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 9 GMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCHHHHHHHHHHH
T ss_conf 99934588499999999703
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.0047 Score=32.76 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.0063 Score=31.93 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983799999689998982898
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+.+|+||+||||||+.+.|+-.+
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999999899999999985
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.28 E-value=0.0042 Score=33.05 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.26 E-value=0.0055 Score=32.30 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=13.3
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 983799999689998982898
Q 000773 3 LLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+|+|++||||||+-+.|+-.+
T Consensus 4 ~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 4 VFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998999998899999999983
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0045 Score=32.86 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=29.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 989837999996899989828989998135799988840687665541786654446578
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVG 60 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~ 60 (1293)
+.+|-|++||||||+-+.|+-.+... +.+ .....+..+++++++.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~----------~~~----~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN----------EVD----YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG----------GSC----GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHH----------CCC----CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410----------134----57884399934653224
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.0029 Score=34.11 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799960999999896999
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
-.++|+|++++|||||+|.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.24 E-value=0.0044 Score=32.93 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|++|+|||||++.+.+.
T Consensus 3 V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999809
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.21 E-value=0.0047 Score=32.74 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999979996099999989699
Q 000773 736 AALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
++++|.+|+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999679
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.21 E-value=0.0047 Score=32.72 Aligned_cols=23 Identities=39% Similarity=0.420 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
..|.|++||||||+-+.|+-++.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999986
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.19 E-value=0.0053 Score=32.43 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=21.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 616839999979996099999989699
Q 000773 730 FRPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 730 i~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
++.+.++.|+||+||||||+-+.|+.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 467828999899999879999999998
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.19 E-value=0.0065 Score=31.87 Aligned_cols=20 Identities=45% Similarity=0.750 Sum_probs=10.5
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999968999898289
Q 000773 3 LLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G~ 22 (1293)
+++|++|+|||||++.|.+.
T Consensus 6 ~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 6 LMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEECSTTSSHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHCCC
T ss_conf 99999998999999998089
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.18 E-value=0.0058 Score=32.18 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=9.5
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999996899989828
Q 000773 3 LLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G 21 (1293)
+|+||+||||||+.+.|+-
T Consensus 4 ~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 4 VLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9988999987999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.0034 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|+|++++|||||+|.|.|...
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99988999989999999858985
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.14 E-value=0.0049 Score=32.63 Aligned_cols=31 Identities=35% Similarity=0.405 Sum_probs=24.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 898379999968999898289899981357999888
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNG 37 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG 37 (1293)
.++.||+||||||+.++|++.+.. +-+.+|+
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~ 65 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 65 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC-----CEEEEEC
T ss_conf 998897998899999999998651-----5489832
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.13 E-value=0.0053 Score=32.41 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
++.++|.+||||||+.+.|+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.11 E-value=0.0058 Score=32.19 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+.++|++|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.11 E-value=0.006 Score=32.09 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.11 E-value=0.0048 Score=32.70 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983799999689998982898
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+..|+||+||||||..+.|+-.+
T Consensus 10 iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998799999999986
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.0053 Score=32.40 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.10 E-value=0.0065 Score=31.84 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=9.0
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9997999609999998969
Q 000773 737 ALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 737 ai~G~sGaGKtTLl~~l~g 755 (1293)
.|+|++||||||+-+.|+.
T Consensus 6 il~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 6 FMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp EEESCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9988999988999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.09 E-value=0.0066 Score=31.83 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+||+||||||.-+.|+-++
T Consensus 6 iil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999986
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.08 E-value=0.0055 Score=32.32 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|-||+||||||.-+.|+-.+
T Consensus 6 IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9978999879899999999996
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.05 E-value=0.032 Score=27.48 Aligned_cols=24 Identities=42% Similarity=0.387 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 839999979996099999989699
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
..+++++||+|+||||.+-=|+.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.02 E-value=0.0081 Score=31.24 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.00 E-value=0.0086 Score=31.08 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=20.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+++|.+||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.98 E-value=0.0092 Score=30.89 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.3
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 989837999996899989828
Q 000773 1 MTLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G 21 (1293)
+.+++|++||||||+.+.++-
T Consensus 16 liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999989999999997
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.96 E-value=0.0067 Score=31.75 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|+|.+|+|||||++.+.+.-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.0068 Score=31.72 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=25.9
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 45661683999997999609999998969
Q 000773 727 TSAFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 727 s~~i~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.|-+++|+++.|.|++|+|||||..-++.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.94 E-value=0.0046 Score=32.80 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=11.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
+++|-|+.||||||+++.|+.
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~ 31 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEK 31 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999889999888999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.0083 Score=31.18 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
..|.||+||||||+-+.|+-++.
T Consensus 5 I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999999999999999969
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.93 E-value=0.0077 Score=31.39 Aligned_cols=20 Identities=45% Similarity=0.498 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
+.|+||+||||||+-+.|+.
T Consensus 3 I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988999997999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.0094 Score=30.84 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=19.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983799999689998982898
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+.+|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.91 E-value=0.0076 Score=31.41 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=9.9
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9997999609999998969
Q 000773 737 ALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 737 ai~G~sGaGKtTLl~~l~g 755 (1293)
.++|++||||||+-+.|+.
T Consensus 5 vliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 5 VLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9988999988999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.0067 Score=31.75 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=10.8
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999689998982
Q 000773 3 LLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~ 20 (1293)
+|+||+||||||..+.|+
T Consensus 4 ~i~G~pGSGKsT~~~~La 21 (179)
T d1e4va1 4 ILLGAPVAGKGTQAQFIM 21 (179)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 998799999899999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.91 E-value=0.0054 Score=32.38 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
..|.|++|+|||||++.|...+
T Consensus 54 igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8611799888999999999987
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.90 E-value=0.0086 Score=31.09 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799960999999896999
Q 000773 736 AALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+.|+|++||||||+-+.|+.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.88 E-value=0.0094 Score=30.82 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++|.||+||||||+-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.87 E-value=0.0075 Score=31.44 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+||+||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.86 E-value=0.0083 Score=31.19 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+.|+||+||||||+-+.|+.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999889999879999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.85 E-value=0.011 Score=30.31 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6839999979996099999989699
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+.+++++||+|+||||.+-=|+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.84 E-value=0.0089 Score=30.99 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6839999979996099999989699
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
|+.-+.++||+|+|||.|-++|+..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.82 E-value=0.0086 Score=31.09 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
+.|+||.||||||+-+.|+.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999998999999999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.81 E-value=0.011 Score=30.44 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
-+|++|.-.+|||||++.|.+
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~ 30 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITG 30 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 899997248869999999970
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.80 E-value=0.0083 Score=31.17 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=19.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399999799960999999896999
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.-.++++|.+|+|||||++.|.+..
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 5799999999989899999996688
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.78 E-value=0.0089 Score=30.99 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+++||+|+|||.|.++|+....
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99989999888899999862132
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.74 E-value=0.007 Score=31.64 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|.|++||||||+.+.|+.++.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989899898999999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.0078 Score=31.34 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|.||+||||+|.-+.|+-++
T Consensus 6 I~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9977999889899999999996
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.0098 Score=30.73 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
++||.|++||||||+-+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999689999876899999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.74 E-value=0.012 Score=30.23 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 16839999979996099999989699
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+.|.++-+.|.|||||||+-+.|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.73 E-value=0.0084 Score=31.15 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=21.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 616839999979996099999989699
Q 000773 730 FRPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 730 i~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+++. ++||+|+..||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.0092 Score=30.89 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799960999999896999
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
..+.+.||+|+||||+.++++...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 449998799998889999999998
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.71 E-value=0.0096 Score=30.79 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
-+.|.||+|+||||+.++++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999789997487999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.68 E-value=0.0096 Score=30.78 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
-+.+.||+|+||||+.++++...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 48987999973889999998503
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.64 E-value=0.011 Score=30.39 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|.+|||||||++.|.+..
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996688
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.63 E-value=0.0096 Score=30.78 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++++|.-.||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.61 E-value=0.011 Score=30.45 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799960999999896999
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+++.|.|++||||||+.+.|+.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998989989899999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.61 E-value=0.012 Score=30.13 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.57 E-value=0.013 Score=30.03 Aligned_cols=26 Identities=42% Similarity=0.504 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 16839999979996099999989699
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+.|.+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.038 Score=27.00 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|++|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999619
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.52 E-value=0.011 Score=30.42 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.8
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 45661683999997999609999998969
Q 000773 727 TSAFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 727 s~~i~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.|-+++|+++.|.|++|+|||++..-++.
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.45 E-value=0.014 Score=29.72 Aligned_cols=26 Identities=12% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 68399999799960999999896999
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.+..+.|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.45 E-value=0.011 Score=30.29 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
..++|++||||||+-+.|+-++.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999949
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.41 E-value=0.0085 Score=31.10 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799960999999896999
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.-+.+.||+|+|||+|.+++++..
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 648876689888359999999873
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.40 E-value=0.016 Score=29.44 Aligned_cols=23 Identities=43% Similarity=0.666 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.++.||+|+||||+.++|+....
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987999988899999999987
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.39 E-value=0.015 Score=29.63 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.+.|+||+||||||+-+.|+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.39 E-value=0.012 Score=30.13 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6839999979996099999989699
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
|-.-+.+.||+|+|||++.++|+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9807998896999889999998620
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.0094 Score=30.85 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=29.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9898379999968999898289899981357999888406876655417866544465788
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGE 61 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~~ 61 (1293)
+.+|.|++||||||+-+.|...+... .....+..+++++.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.0043 Score=33.02 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
..+.|++||||||+-+.|+-++.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999997
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.36 E-value=0.013 Score=29.99 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999799960999999896
Q 000773 735 LAALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~ 754 (1293)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.35 E-value=0.013 Score=30.03 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=9.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999799960999999896
Q 000773 736 AALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~ 754 (1293)
++++|..++|||||++.|.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478984999999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.33 E-value=0.013 Score=29.87 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=21.9
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 616839999979996099999989699
Q 000773 730 FRPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 730 i~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+++..-+.+.||+|+|||++.+.++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 998886786689988822899999998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.31 E-value=0.015 Score=29.52 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=20.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 16839999979996099999989699
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+..+++++||+|+||||.+-=|+.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999889999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.31 E-value=0.012 Score=30.22 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++++|.-.||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.30 E-value=0.011 Score=30.47 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|-|+.||||||+++.|+..++
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999889999888999999998707
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.27 E-value=0.011 Score=30.32 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799960999999896999
Q 000773 736 AALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+.+.||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.25 E-value=0.0031 Score=33.90 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
++++|++++|||||++.|.|
T Consensus 3 I~liG~~n~GKSSLin~l~g 22 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLN 22 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999999999999958
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.25 E-value=0.013 Score=29.94 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=24.3
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 4566168399999799960999999896
Q 000773 727 TSAFRPGVLAALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 727 s~~i~~G~~~ai~G~sGaGKtTLl~~l~ 754 (1293)
.|-+++|+++.|.||+|+|||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.20 E-value=0.0063 Score=31.96 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=16.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 98983799999689998982898
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+.+|.|+|||||||+.+.|....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999780999999999997
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.015 Score=29.63 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=25.6
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 45661683999997999609999998969
Q 000773 727 TSAFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 727 s~~i~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.|-+++|+++.|.|++|+|||++..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.17 E-value=0.018 Score=29.08 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.16 E-value=0.013 Score=29.87 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.15 E-value=0.016 Score=29.41 Aligned_cols=23 Identities=43% Similarity=0.600 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+++|++||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.10 E-value=0.017 Score=29.21 Aligned_cols=22 Identities=59% Similarity=0.819 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
..+.||+|+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.05 E-value=0.019 Score=28.83 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+||+||||||+-+.|+-++
T Consensus 9 IiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999997
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.017 Score=29.24 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+.++||+||||||.-+.|+-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.012 Score=30.19 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=40.6
Q ss_pred HHCCCEEEEECCCCCCCHHHH------HHHHHHHHHH----HHC-CCEEEEEECCCCHHHHHHHHHHHEEE-CCCEEEEE
Q ss_conf 519977899599999999999------9999999998----738-99899992699899999985752102-49689993
Q 000773 862 VANPSIIFMDEPTSGLDARAA------AIVMRTVRNT----VDT-GRTVVCTIHQPSIDIFEAFDELLLLK-RGGQVIYS 929 (1293)
Q Consensus 862 ~~~p~il~lDEptsgLD~~~~------~~i~~~l~~~----~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~-~~g~~~~~ 929 (1293)
...|.|+++||--.=...... ..+...+... ... +..+|+++++|.. .|.-+.-. +=.+.++.
T Consensus 95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~r~gRfd~~i~~ 169 (258)
T d1e32a2 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALRRFGRFDREVDI 169 (258)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGTSTTSSCEEEEC
T ss_pred HCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHHHCCCCCCEEEC
T ss_conf 6499499852111322578877770689998775001101234688117975799310-----25245424630232378
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 79998916899999829
Q 000773 930 GPLGRNSHKVIEYYEAI 946 (1293)
Q Consensus 930 g~~~~~~~~~~~~f~~~ 946 (1293)
++++. +.....++..
T Consensus 170 ~~P~~--~~R~~il~~~ 184 (258)
T d1e32a2 170 GIPDA--TGRLEILQIH 184 (258)
T ss_dssp CCCCH--HHHHHHHHHT
T ss_pred CCCCH--HHHHHHHHHH
T ss_conf 99998--8999873220
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.97 E-value=0.014 Score=29.83 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=10.3
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999996899989828
Q 000773 3 LLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G 21 (1293)
+++|++|+|||||++.+.+
T Consensus 6 ~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 6 TLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 9999999898999999971
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.96 E-value=0.011 Score=30.29 Aligned_cols=85 Identities=22% Similarity=0.279 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCC---------CHHHHHHHH-HHHHHH---H-HCCCEEEEEECCCCHHHHHHHHHHHE
Q ss_conf 999999995199778995999999---------999999999-999998---7-38998999926998999999857521
Q 000773 854 RLTIAVELVANPSIIFMDEPTSGL---------DARAAAIVM-RTVRNT---V-DTGRTVVCTIHQPSIDIFEAFDELLL 919 (1293)
Q Consensus 854 r~~ia~~l~~~p~il~lDEptsgL---------D~~~~~~i~-~~l~~~---~-~~g~tvi~~~H~~~~~~~~~~d~v~~ 919 (1293)
+-.+..+-...|.++++||--.=. .......+. ..+..+ . +.+.-+|.++++|.. .|.-+.
T Consensus 90 ~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-----ld~al~ 164 (265)
T d1r7ra3 90 REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-----IDPAIL 164 (265)
T ss_dssp HHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-----TSCGGG
T ss_pred HHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-----CCHHHH
T ss_conf 999999986398435687546324557876788737999999999999628677799899991799222-----799780
Q ss_pred EE-CCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 02-496899937999891689999982
Q 000773 920 LK-RGGQVIYSGPLGRNSHKVIEYYEA 945 (1293)
Q Consensus 920 l~-~~g~~~~~g~~~~~~~~~~~~f~~ 945 (1293)
=. +=.+.++.+++... ...+.+..
T Consensus 165 r~gRf~~~i~~~~p~~~--~R~~il~~ 189 (265)
T d1r7ra3 165 RPGRLDQLIYIPLPDEK--SRVAILKA 189 (265)
T ss_dssp SSTTSEEEEECCCCCCH--HHHHHHHH
T ss_pred CCCCCCEEEEECCHHHH--HHHHHHHH
T ss_conf 78776479995660788--89999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.96 E-value=0.016 Score=29.44 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.012 Score=30.18 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=12.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 839999979996099999989699
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+.+++|-|+.||||||+++.|+..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 988999878887799999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.94 E-value=0.02 Score=28.80 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=9.8
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999996899989828
Q 000773 3 LLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G 21 (1293)
+|+|-+-+|||||+|+|+|
T Consensus 4 ~lvG~pn~GKStlfn~lt~ 22 (319)
T d1wxqa1 4 GVVGKPNVGKSTFFSAATL 22 (319)
T ss_dssp EEEECTTSSHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 6889999989999999978
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.92 E-value=0.0072 Score=31.59 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
++||.|+|||||||+-+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.88 E-value=0.014 Score=29.65 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=10.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
++++|.+|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999973
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.87 E-value=0.017 Score=29.28 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999799960999999896
Q 000773 735 LAALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~ 754 (1293)
-+||+|+.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.86 E-value=0.016 Score=29.43 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=9.9
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999996899989828
Q 000773 3 LLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G 21 (1293)
+++|++|+|||||++.+.+
T Consensus 6 ~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 6 IILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 9999999698999999970
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.85 E-value=0.0032 Score=33.81 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|++++|||||++.|.|.-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.021 Score=28.56 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=19.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 839999979996099999989699
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
-.+++++||+|+||||.+-=|+.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 979999899999989999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=0.0096 Score=30.77 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|-|+.||||||+++.|+..++
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899987888779999999999973
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.026 Score=28.02 Aligned_cols=23 Identities=48% Similarity=0.855 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+++.||+|+|||++.++|+....
T Consensus 48 iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHCC
T ss_conf 78668998882289999999829
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.82 E-value=0.017 Score=29.18 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.82 E-value=0.036 Score=27.17 Aligned_cols=34 Identities=29% Similarity=0.207 Sum_probs=25.4
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 11010456616839999979996099999989699
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+|.. ...-.|.-+.+.|+||+|||||...|..+
T Consensus 5 ~~H~~-~v~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGV-LLEVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEE-EEEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEE-EEEECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 17899-99999999999818999989999999985
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.81 E-value=0.023 Score=28.39 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+||+||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999799999999998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.77 E-value=0.021 Score=28.64 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+|++|+|||||++.+.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.76 E-value=0.024 Score=28.28 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=19.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6839999979996099999989699
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.|..+++-|+.||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.74 E-value=0.017 Score=29.19 Aligned_cols=19 Identities=53% Similarity=0.795 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999799960999999896
Q 000773 736 AALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~ 754 (1293)
++|+|+.|+|||||...|.
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999488980999999999
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.74 E-value=0.024 Score=28.26 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|+||+||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.73 E-value=0.033 Score=27.39 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=25.3
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 11010456616839999979996099999989699
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+|. +...-.|.-+.+.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 2899-999999999999808999989999999985
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.023 Score=28.34 Aligned_cols=36 Identities=42% Similarity=0.738 Sum_probs=28.3
Q ss_pred CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 321101045661683999997999609999998969999
Q 000773 720 LRLLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGRKT 758 (1293)
Q Consensus 720 ~~iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~~ 758 (1293)
..+|+.++. |=-+++|+||.++|||||||.|.|...
T Consensus 22 l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 22 LKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999970799---879999889999979999999809987
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.71 E-value=0.025 Score=28.16 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|.-+||||||+|+|+|.-
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCHHHHHHHHHCCC
T ss_conf 9998189897999999996899
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.70 E-value=0.02 Score=28.75 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999979996099999989699
Q 000773 736 AALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+.+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.68 E-value=0.017 Score=29.22 Aligned_cols=22 Identities=55% Similarity=0.629 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996487
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.67 E-value=0.016 Score=29.44 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=17.8
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 98983799999689998982
Q 000773 1 MTLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~ 20 (1293)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.66 E-value=0.018 Score=29.04 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
++|.||+|+|||||++.++....
T Consensus 32 i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99986999829999999999779
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=0.025 Score=28.12 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 683999997999609999998969999
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGRKT 758 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~~~ 758 (1293)
.|.++++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.63 E-value=0.024 Score=28.26 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999799960999999896
Q 000773 735 LAALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~ 754 (1293)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.61 E-value=0.023 Score=28.36 Aligned_cols=24 Identities=50% Similarity=0.738 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898379999968999898289899
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNR 25 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1293)
.++.||+|+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 898799997388999999850388
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.60 E-value=0.022 Score=28.44 Aligned_cols=25 Identities=36% Similarity=0.355 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6839999979996099999989699
Q 000773 732 PGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
...+++++||+|+||||.+-=|+.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.60 E-value=0.02 Score=28.73 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|++|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.52 E-value=0.028 Score=27.88 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
++||-|+.|||||||-+.|..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 998379987889999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.026 Score=28.00 Aligned_cols=20 Identities=45% Similarity=0.750 Sum_probs=10.2
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999968999898289
Q 000773 3 LLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G~ 22 (1293)
+++|++|+|||||++.+.+.
T Consensus 5 ~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 5 LLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEECCTTSSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHCC
T ss_conf 99898993999999998188
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.038 Score=27.02 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=30.5
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCC-CCCCEEEEEEECCCC
Q ss_conf 566168399999799960999999896999-998146799996921
Q 000773 728 SAFRPGVLAALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIRISGFP 772 (1293)
Q Consensus 728 ~~i~~G~~~ai~G~sGaGKtTLl~~l~g~~-~~~~~~G~i~i~g~~ 772 (1293)
|-+++|.++.+.||+|+|||||.--++... ..+ .-.+++|...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g--~~~vyidtE~ 92 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEH 92 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCC
T ss_conf 9966735899805777478999999999987089--8799986544
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.019 Score=28.86 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.43 E-value=0.024 Score=28.23 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399999799960999999896999
Q 000773 733 GVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
...+.|.||+|+||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.42 E-value=0.02 Score=28.76 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=17.0
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6168399999799960999999896999
Q 000773 730 FRPGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 730 i~~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+++..-+.|.||+|+|||+|.+++++..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9988757887899876304778878771
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.41 E-value=0.027 Score=27.90 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|.-.||||||+|+|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997689897999999996898
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.017 Score=29.16 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.026 Score=27.98 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
.+++|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899798999999970
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.023 Score=28.37 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.35 E-value=0.03 Score=27.65 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689998982
Q 000773 2 TLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1293)
.+++|++|+|||||++.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989959899999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.34 E-value=0.028 Score=27.83 Aligned_cols=23 Identities=52% Similarity=0.730 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+++.||+|+|||++.++|+....
T Consensus 43 vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99889699988999999862010
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.02 Score=28.70 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.31 E-value=0.025 Score=28.11 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=37.7
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99778995999999999999999999998738998999926998999999857521024968999379998916899999
Q 000773 864 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYY 943 (1293)
Q Consensus 864 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~~~~~~~~~~~f 943 (1293)
+.+++++||.- ++.......+...+.... ....+++++++.+ .+... +.+. ..++.+.++.. +++..+.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~-~i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSN-KIIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCC-CCCHHHHHHHHHHCCCCC-CCEEEEECCCCHH-HHHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 35999982443-232157787752011233-3336653147430-21067-----8877-77765313322--4567888
Q ss_pred HH
Q ss_conf 82
Q 000773 944 EA 945 (1293)
Q Consensus 944 ~~ 945 (1293)
..
T Consensus 170 ~~ 171 (224)
T d1sxjb2 170 LQ 171 (224)
T ss_dssp HH
T ss_pred HH
T ss_conf 77
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.30 E-value=0.048 Score=26.34 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999979996099999989699
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
-.+||+|.+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.27 E-value=0.026 Score=28.04 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.034 Score=27.31 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.034 Score=27.27 Aligned_cols=23 Identities=30% Similarity=0.634 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.022 Score=28.51 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=9.1
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999689998982
Q 000773 3 LLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~ 20 (1293)
+++|++|+|||||++.+.
T Consensus 7 vvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 7 IIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEESSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999939999999996
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.21 E-value=0.037 Score=27.10 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.++.||+|+|||++.++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 68766998883089999998748
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.20 E-value=0.037 Score=27.03 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898379999968999898289899
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNR 25 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1293)
.+|.||+|+||||+++.++..+..
T Consensus 46 lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 46 ATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 688898999899999999999754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.19 E-value=0.023 Score=28.36 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=19.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+++||+|+||||.+--|+.+..
T Consensus 8 vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 8 VVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999988999999999999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=93.19 E-value=0.022 Score=28.46 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=9.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999799960999999896
Q 000773 736 AALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~ 754 (1293)
+|++|.-++|||||++.|.
T Consensus 6 i~iiGHvd~GKSTL~~~l~ 24 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAIT 24 (196)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999588980999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.034 Score=27.26 Aligned_cols=19 Identities=42% Similarity=0.434 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689998982
Q 000773 2 TLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1293)
.+|.|..||||||..+.+.
T Consensus 6 IgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9978988688999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.14 E-value=0.024 Score=28.21 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++||+|+||||.+--|+-+.
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.11 E-value=0.024 Score=28.30 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
++++|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.07 E-value=0.031 Score=27.53 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
..+.||+|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.026 Score=28.04 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=19.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+++||+|+||||.+--|+-++.
T Consensus 11 vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999998999999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.025 Score=28.10 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
++.|.||+|+||||+..-++....
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999995899999999999999998
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.05 E-value=0.025 Score=28.13 Aligned_cols=23 Identities=52% Similarity=0.782 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.++.||+|+||||+.+++++...
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.04 E-value=0.013 Score=30.02 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999609999998969999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRKT 758 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~~ 758 (1293)
=+.|.|+.|+|||||.+.+++..+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.03 E-value=0.028 Score=27.81 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.026 Score=27.99 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.98 E-value=0.044 Score=26.61 Aligned_cols=34 Identities=29% Similarity=0.190 Sum_probs=25.7
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 11010456616839999979996099999989699
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
-+|. ++..-.|.-+.+.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.95 E-value=0.036 Score=27.16 Aligned_cols=20 Identities=40% Similarity=0.601 Sum_probs=9.7
Q ss_pred EEECCCCCCHHHHHHHHHCC
Q ss_conf 98379999968999898289
Q 000773 3 LLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G~ 22 (1293)
+++|.+|+|||||++.+.+.
T Consensus 7 ~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 7 VLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEECCTTSSHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHHC
T ss_conf 99998992999999999728
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.95 E-value=0.033 Score=27.40 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
.+++|.+|+|||||++.+.+
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999678999999986
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.94 E-value=0.022 Score=28.45 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+.|+|-+.+|||||+++|++--
T Consensus 13 iGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997899998999999997789
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.023 Score=28.39 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=12.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.92 E-value=0.022 Score=28.52 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++||+|+||||.+--|+-++
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp EEEECSCCC----HHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.92 E-value=0.035 Score=27.24 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=31.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 898379999968999898289899981357999888406876655417866544
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQN 55 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~ 55 (1293)
.+++||+|+|||-|.+.||+.+.- -=+.+++..++ ..|||..+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 799899998899999999987389-----88986255114------11111044
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.03 Score=27.65 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.87 E-value=0.032 Score=27.50 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=38.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99778995999999999999999999998738998999926998999999857521024968999379998916899999
Q 000773 864 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYY 943 (1293)
Q Consensus 864 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~~~~~~~~~~~f 943 (1293)
+.+++++||.- .+.......+...+....+ ...++++++++. .+... +.++ ...+.+.+... .++..+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l 167 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRI 167 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCC-CEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCC
T ss_conf 71899996632-0002378999988631120-023201267087-75999-----9988-75401235652--0001102
Q ss_pred HH
Q ss_conf 82
Q 000773 944 EA 945 (1293)
Q Consensus 944 ~~ 945 (1293)
..
T Consensus 168 ~~ 169 (227)
T d1sxjc2 168 AN 169 (227)
T ss_dssp HH
T ss_pred CC
T ss_conf 12
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=0.039 Score=26.92 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=27.0
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1101045661683999997999609999998969
Q 000773 722 LLNEVTSAFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 722 iL~~vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
+++ .=..+-.|+..+|.|++|+|||||+..++.
T Consensus 33 ~ID-~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 33 VLD-LASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHH-HHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred EEE-ECCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 564-125645787556867999887899999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.029 Score=27.78 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=10.0
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999996899989828
Q 000773 3 LLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G 21 (1293)
+++|++|+|||||++.+.+
T Consensus 9 ~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 9 VLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999198999999972
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.023 Score=28.35 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=11.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|.+|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.85 E-value=0.028 Score=27.86 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=17.8
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 98983799999689998982
Q 000773 1 MTLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~ 20 (1293)
+.+|.|++||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.85 E-value=0.021 Score=28.61 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.046 Score=26.44 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=9.0
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999689998982
Q 000773 3 LLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~ 20 (1293)
+++|++|+|||||++.+.
T Consensus 10 ~vvG~~~vGKSSli~~~~ 27 (174)
T d1wmsa_ 10 ILLGDGGVGKSSLMNRYV 27 (174)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999979999999998
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.028 Score=27.81 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
.+|+|++|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999498999999972
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.036 Score=27.17 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.026 Score=28.06 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.77 E-value=0.03 Score=27.62 Aligned_cols=23 Identities=39% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+++||+|+||||.+--|+.++.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.028 Score=27.88 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.77 E-value=0.026 Score=28.04 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
++++|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999961
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.045 Score=26.52 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.75 E-value=0.029 Score=27.72 Aligned_cols=21 Identities=57% Similarity=0.893 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
+++|-|.-||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899989987899999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.74 E-value=0.047 Score=26.41 Aligned_cols=23 Identities=52% Similarity=0.827 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.++.||+|+|||++.++|+.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.029 Score=27.77 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|++|+|||||++.+.+.
T Consensus 7 v~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998992989999999719
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.046 Score=26.46 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=21.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 16839999979996099999989699
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
+|...+.++||+|+|||.|.+.|+..
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87658999778750069999999863
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.66 E-value=0.034 Score=27.30 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+||+|.+.+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.65 E-value=0.041 Score=26.78 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799960999999896999
Q 000773 736 AALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+|++|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.64 E-value=0.038 Score=26.97 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.63 E-value=0.023 Score=28.41 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.59 E-value=0.18 Score=22.72 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=33.7
Q ss_pred CCCCEEEEECCCCCC----CHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCCEEEE
Q ss_conf 698186763798541----28999999999999976179889999527984--------699720026885
Q 000773 161 GPTKTLFMDEISTGL----DSSTTYQIVKCLQQIVHVTDATILMSLLQPAP--------ETFDLFDDIILL 219 (1293)
Q Consensus 161 ~~p~IllLDEPTSgL----D~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~~--------~~~~lfD~I~iL 219 (1293)
.++++++.|.-+.-. +..........+...+++.+.+++++.|+... .....+|.++.+
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 194 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVIL 194 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEE
T ss_conf 31222002078899876057267899999999999863971688421025542224676233536299998
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.032 Score=27.49 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=11.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.57 E-value=0.03 Score=27.66 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=40.7
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHHH
Q ss_conf 19977899599999999999999999999873899899992699899999985752102496899937999891689999
Q 000773 863 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEY 942 (1293)
Q Consensus 863 ~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~~~~~~~~~~~ 942 (1293)
.+.+++++||.-. |...+...+.+.+.... ....+|++++++.. +.... .++ -..+...|+.. +++.++
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~-i~~~l-----~sR-~~~i~~~~~~~--~~~~~~ 198 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP-IIAPI-----KSQ-CLLIRCPAPSD--SEISTI 198 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS-SCHHH-----HTT-SEEEECCCCCH--HHHHHH
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCCC-HHHHH-----HCC-HHEEEECCCCH--HHHHHH
T ss_conf 8724999424333-45431112210022135-66430001021110-02544-----210-00243035330--468999
Q ss_pred HHHC
Q ss_conf 9829
Q 000773 943 YEAI 946 (1293)
Q Consensus 943 f~~~ 946 (1293)
...+
T Consensus 199 l~~i 202 (252)
T d1sxje2 199 LSDV 202 (252)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.55 E-value=0.033 Score=27.38 Aligned_cols=53 Identities=23% Similarity=0.361 Sum_probs=32.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 989837999996899989828989998135799988840687665541786654446578889899999996
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRLNEFVPQKTSAYISQNDVHVGEMTVKETLDFSA 72 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~~~~~~~~~~~yv~Q~d~l~~~lTVrE~l~f~~ 72 (1293)
+.+|-|++|||||||-..|.-.+... . .....+..++.+|.. +|-.|-...+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~-------------~~~~~v~~iS~DdfY---~t~~~r~~L~~ 81 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---Y-------------GGEKSIGYASIDDFY---LTHEDQLKLNE 81 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---H-------------GGGSCEEEEEGGGGB---CCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---H-------------CCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_conf 99837998788999999999999987---2-------------778606763567777---88899999852
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.51 E-value=0.022 Score=28.53 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
++++|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.036 Score=27.16 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|.+|+|||||++.+.+..
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989908899999997199
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.03 Score=27.68 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+++|+||-++|||||||.|.|...
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999889999979999999809987
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.50 E-value=0.05 Score=26.22 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=24.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 661683999997999609999998969
Q 000773 729 AFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 729 ~i~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
..+||.+++|-|+=||||||+.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 579982999966877658899999876
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.042 Score=26.70 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.037 Score=27.03 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.44 E-value=0.035 Score=27.22 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689998982
Q 000773 2 TLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1293)
.+++||.++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=92.40 E-value=0.042 Score=26.75 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=10.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999799960999999896
Q 000773 736 AALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~ 754 (1293)
++++|.-.+|||||++.|.
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999378989899999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.39 E-value=0.05 Score=26.22 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=9.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999799960999999896
Q 000773 736 AALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~ 754 (1293)
++++|..|+|||||++-+.
T Consensus 5 v~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999929899999997
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.039 Score=26.92 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.29 E-value=0.042 Score=26.73 Aligned_cols=98 Identities=7% Similarity=0.100 Sum_probs=54.8
Q ss_pred HHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH-HHHHHHEEECCCEEEEECCCCCCHH-H
Q ss_conf 5199778995999999-99999999999999873899899992699899999-9857521024968999379998916-8
Q 000773 862 VANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE-AFDELLLLKRGGQVIYSGPLGRNSH-K 938 (1293)
Q Consensus 862 ~~~p~il~lDEptsgL-D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~~~g~~~~~g~~~~~~~-~ 938 (1293)
+.+.+++++|+--.=. +...+..+..++....+.|+.+|+++..+..+.-. .-|-.--+. .|.++.-.|..+... -
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~-~g~~~~i~p~d~~~~~i 173 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE-GGILVEIELDNKTRFKI 173 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH-TSEEEECCCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHH-CCEEEEECCCCHHHHHH
T ss_conf 76213010112655058657788999999987631663899548751001343267888861-85689978882799999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999829999878888886642022
Q 000773 939 VIEYYEAIPGVPKIKEKYNPATWMLE 964 (1293)
Q Consensus 939 ~~~~f~~~~~~~~~~~~~npad~~~~ 964 (1293)
+..+.... |. .++ .+.++|+++
T Consensus 174 L~~~a~~r-gl-~l~--~~v~~yl~~ 195 (213)
T d1l8qa2 174 IKEKLKEF-NL-ELR--KEVIDYLLE 195 (213)
T ss_dssp HHHHHHHT-TC-CCC--HHHHHHHHH
T ss_pred HHHHHHHC-CC-CCC--HHHHHHHHH
T ss_conf 99999982-99-999--999999998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.29 E-value=0.038 Score=26.96 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+++.|+||+||||+...+..+-
T Consensus 17 vl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 17 VLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9998089999899999999859
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.28 E-value=0.041 Score=26.77 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
++|.|+||+||||+...+..+-
T Consensus 18 vli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 18 VLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9998189999899999999859
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.27 E-value=0.014 Score=29.74 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
+.+.||+|+||||+.++++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~ 57 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAR 57 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988998775589999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=0.039 Score=26.95 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
++||.|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.25 E-value=0.044 Score=26.56 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.24 E-value=0.052 Score=26.11 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|-|..||||||+++.|..++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.031 Score=27.52 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|++|+|||||++.+.+.
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993889999999719
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.037 Score=27.04 Aligned_cols=18 Identities=44% Similarity=0.683 Sum_probs=9.2
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999689998982
Q 000773 3 LLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~ 20 (1293)
+|+|.+|+|||||++.+.
T Consensus 7 vlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 7 VLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEECCTTSCHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999939899999998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.046 Score=26.47 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|++|+|||||++-+.+.
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.18 E-value=0.029 Score=27.72 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=14.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+.++|++|+|||||++.+.+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998789999998448
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.12 E-value=0.044 Score=26.61 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=13.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.+||+|-+.+|||||+++|++
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~ 24 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTK 24 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 488889999988999999977
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.09 E-value=0.057 Score=25.86 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
++++|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899499999999973
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.033 Score=27.35 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=8.6
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999689998982
Q 000773 3 LLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~ 20 (1293)
+++|++|+|||||++.+.
T Consensus 9 ~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 9 LVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999909999999997
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.033 Score=27.34 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.057 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
++|+|.+|+|||||++.+.+..
T Consensus 8 ivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999979999999997498
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.01 E-value=0.041 Score=26.78 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 898379999968999898289899981357999888406
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNRDLKVRGEITYNGYRL 40 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~~~~~~G~V~inG~~~ 40 (1293)
..+.|.|||||||+.+.|.-++... ...-.+.++|..+
T Consensus 27 IwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 27 IWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDNI 64 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHHH
T ss_conf 9998999999899999999887774-2750899753678
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.00 E-value=0.052 Score=26.11 Aligned_cols=20 Identities=40% Similarity=0.567 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
+.+.||+|+||||+.++++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99988999870546999999
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.97 E-value=0.029 Score=27.69 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
++.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.97 E-value=0.052 Score=26.13 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
++.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.89 E-value=0.054 Score=26.04 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.88 E-value=0.052 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|.+|+|||||++.+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.032 Score=27.46 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=15.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898379999968999898289
Q 000773 1 MTLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~ 22 (1293)
+++|-|.-||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.85 E-value=0.033 Score=27.38 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|.+|+|||||++.+.+..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949999999997098
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.043 Score=26.62 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|..|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.044 Score=26.56 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
.+++|++|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899789999999973
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.75 E-value=0.061 Score=25.69 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999799960999999896
Q 000773 735 LAALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~ 754 (1293)
.+.++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.049 Score=26.31 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.72 E-value=0.032 Score=27.48 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=10.3
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9837999996899989828
Q 000773 3 LLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G 21 (1293)
+++|++|+|||||++.+.+
T Consensus 7 ~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 7 VLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEECTTSSHHHHHHTTC-
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999088999999984
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.70 E-value=0.037 Score=27.06 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+++|++|+|||||++.+.+...
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999878999999844888
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.035 Score=27.21 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.68 E-value=0.054 Score=26.03 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHH---HCCCCC
Q ss_conf 898379999968999898---289899
Q 000773 2 TLLLGPPSSGKTTLLLAL---AGKLNR 25 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L---~G~~~~ 25 (1293)
.+|+||.|||||||...| +|..+.
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 999958989989999999996485340
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.68 E-value=0.052 Score=26.10 Aligned_cols=20 Identities=50% Similarity=0.483 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
.+|+||.|||||||..+|..
T Consensus 5 v~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99994889809999999999
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.06 Score=25.73 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|.+|+|||||++.+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997996989999999739
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.65 E-value=0.055 Score=25.99 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689998982
Q 000773 2 TLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1293)
.+++|.+|+|||||++-+.
T Consensus 9 illlG~~~vGKTsll~~~~ 27 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999899998899999895
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.65 E-value=0.042 Score=26.68 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
++++|.-++|||||++.|..
T Consensus 27 i~iiGHVD~GKSTL~~~Ll~ 46 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNILF 46 (245)
T ss_dssp EEEEECGGGTHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHH
T ss_conf 99995279899999999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.069 Score=25.34 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.64 E-value=0.048 Score=26.37 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
.+++|.+|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999972
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.50 E-value=0.049 Score=26.28 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=9.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999799960999999896
Q 000773 736 AALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~ 754 (1293)
+.++|.+|+|||||++-+.
T Consensus 7 i~lvG~~~vGKTsll~~~~ 25 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFF 25 (169)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989959899999997
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.06 Score=25.74 Aligned_cols=18 Identities=39% Similarity=0.750 Sum_probs=9.5
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 983799999689998982
Q 000773 3 LLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~ 20 (1293)
+++|.+|+|||||++-+.
T Consensus 10 ~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 10 VLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999949899999998
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.053 Score=26.06 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999971
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.44 E-value=0.045 Score=26.51 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=18.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898379999968999898289
Q 000773 1 MTLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~ 22 (1293)
++.|.||+|+||||+..-++-.
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999838999889999999998
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.41 E-value=0.061 Score=25.67 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=10.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999799960999999896
Q 000773 735 LAALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~ 754 (1293)
++.++|.+|+|||||++-+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989958899999997
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.39 E-value=0.074 Score=25.17 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
+.|+|-+-+|||||+++|++--
T Consensus 5 ~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 5 CGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 8888999998899999997799
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.076 Score=25.07 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.+.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.36 E-value=0.071 Score=25.27 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999979996099999989
Q 000773 735 LAALMGVSGAGKTTLMDVL 753 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l 753 (1293)
++.++|.+|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.34 E-value=0.058 Score=25.81 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.076 Score=25.10 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999799960999999896
Q 000773 736 AALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~ 754 (1293)
++++|+.|+|||||++-+.
T Consensus 9 i~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999929999999997
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.068 Score=25.37 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=11.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++|+|.+|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.31 E-value=0.059 Score=25.76 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99997999609999998969
Q 000773 736 AALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~g 755 (1293)
+.+.||+|+||||+.++++.
T Consensus 36 lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99889999988999999997
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.30 E-value=0.077 Score=25.05 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995889999999729
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.052 Score=26.12 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
.+++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.058 Score=25.82 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.24 E-value=0.078 Score=24.99 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.+.++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.24 E-value=0.051 Score=26.18 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|-|+.||||||+.+.|...+.
T Consensus 4 fIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989988879999999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.05 Score=26.26 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+.+|-|+.||||||+.+.|...+.
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989988899999999999998
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=0.067 Score=25.44 Aligned_cols=19 Identities=47% Similarity=0.681 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689998982
Q 000773 2 TLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1293)
.+++|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999899999899999884
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.06 E-value=0.042 Score=26.69 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=18.3
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9837999996899989828989
Q 000773 3 LLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 3 aIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+.||+|+||||+++.++..+.
T Consensus 50 ~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9678999899999999999987
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.94 E-value=0.05 Score=26.23 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 112699988779889999999999951997789959999999999999999999987389989999269
Q 000773 837 AIVGLPGVTGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 905 (1293)
Q Consensus 837 ~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 905 (1293)
.++..|+--.+++.-..-+ -+.+-.+++.| +..|+-+.|...+.... +.+..+++.+-.
T Consensus 99 nliDtPGh~dF~~ev~~al-----~~~D~allVVd-a~eGv~~qT~~~~~~a~----~~~~p~i~viNK 157 (341)
T d1n0ua2 99 NLIDSPGHVDFSSEVTAAL-----RVTDGALVVVD-TIEGVCVQTETVLRQAL----GERIKPVVVINK 157 (341)
T ss_dssp EEECCCCCCSSCHHHHHHH-----HTCSEEEEEEE-TTTBSCHHHHHHHHHHH----HTTCEEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHH-----HHCCCEEEEEE-CCCCCCHHHHHHHHHHH----HCCCCEEEEEEC
T ss_conf 9973787388999999887-----52372499986-56682046999999998----769986999877
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.93 E-value=0.055 Score=25.98 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
++|.|+||+||||+.-.+..+
T Consensus 18 vli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 18 VLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999808999999999999984
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.84 E-value=0.071 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.84 E-value=0.069 Score=25.33 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689998982
Q 000773 2 TLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1293)
.+++||+++|||||...|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.82 E-value=0.072 Score=25.22 Aligned_cols=28 Identities=25% Similarity=0.112 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1683999997999609999998969999
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGRKT 758 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~~~ 758 (1293)
+.+..+.+.||+|+|||++-+.|++...
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.77 E-value=0.11 Score=24.18 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=30.0
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCEEEEEEECCCC
Q ss_conf 56616839999979996099999989699-9998146799996921
Q 000773 728 SAFRPGVLAALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIRISGFP 772 (1293)
Q Consensus 728 ~~i~~G~~~ai~G~sGaGKtTLl~~l~g~-~~~~~~~G~i~i~g~~ 772 (1293)
+-++.|.++.+.||+|+|||||.-.++.. ...+. --++||...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~--~~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--VAAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCC
T ss_conf 98666336999648874889999999998754898--899998976
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.74 E-value=0.074 Score=25.16 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+++|++|+|||||++.+.+..
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989978999999997197
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=0.072 Score=25.21 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=10.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++++|.+|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.53 E-value=0.062 Score=25.63 Aligned_cols=20 Identities=45% Similarity=0.519 Sum_probs=17.1
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 98983799999689998982
Q 000773 1 MTLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~ 20 (1293)
++.|.||+||||||+..-++
T Consensus 38 ~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998589898899999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.084 Score=24.79 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
.+++|.+|+|||||++.+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999899899999999970
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.46 E-value=0.075 Score=25.12 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999598999999972
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.46 E-value=0.09 Score=24.62 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
++++|.+|+|||||++.+.+..
T Consensus 6 vvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999969999999997199
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=0.085 Score=24.78 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999799960999999896
Q 000773 736 AALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl~~l~ 754 (1293)
+.|+|++|||||++++.+.
T Consensus 53 ~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 53 LLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 8999079996899999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.073 Score=25.18 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.+|=|+-||||||+++.|+-.+
T Consensus 5 IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998998885999999999987
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.05 E-value=0.072 Score=25.22 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=19.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+|.|.|++|+||||+..-++-...
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999991799998999999999998
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.99 E-value=0.1 Score=24.22 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.94 E-value=0.12 Score=23.82 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979996099999989699
Q 000773 735 LAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
.++++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.91 E-value=0.1 Score=24.30 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+++||+|+|||.|.+.|+-.+.
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHCC
T ss_conf 99977875006999999986336
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.86 E-value=0.086 Score=24.75 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999609999998969999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRKT 758 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~~ 758 (1293)
++.|-|.=||||||||+-+....+
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCC
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899864888999999999985678
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.83 E-value=0.077 Score=25.04 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=21.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9898379999968999898289899
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLNR 25 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~~ 25 (1293)
+.+|-|+.||||||+.+.|+-++..
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999899888699999999999971
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.095 Score=24.47 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.3
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 989837999996899989828
Q 000773 1 MTLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G 21 (1293)
++.|.|++|+|||++..-++.
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999988998878899999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.64 E-value=0.11 Score=23.95 Aligned_cols=46 Identities=9% Similarity=0.159 Sum_probs=22.8
Q ss_pred HCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 4698186763798541-2899999999999997617988999952798
Q 000773 160 VGPTKTLFMDEISTGL-DSSTTYQIVKCLQQIVHVTDATILMSLLQPA 206 (1293)
Q Consensus 160 ~~~p~IllLDEPTSgL-D~~ta~~i~~~L~~l~~~~g~tvI~ti~qp~ 206 (1293)
+...+++++||.-.=. +...+..+++.+..... .++.+|++...+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p 141 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHP 141 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCG
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCC
T ss_conf 7621301011265505865778899999998763-1663899548751
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.46 E-value=0.14 Score=23.41 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=15.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999997999609999998969
Q 000773 734 VLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.41 E-value=0.073 Score=25.21 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=22.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6168399999799960999999896999
Q 000773 730 FRPGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 730 i~~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
-.|...+.+.||+|+|||.|-+.|++..
T Consensus 120 ~~~~g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 120 RYASGMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEESEEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 3688638887799850889999999986
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=89.36 E-value=0.085 Score=24.77 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=8.1
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999979996099999
Q 000773 736 AALMGVSGAGKTTLM 750 (1293)
Q Consensus 736 ~ai~G~sGaGKtTLl 750 (1293)
+.|.|+.||||||.|
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=89.33 E-value=0.09 Score=24.61 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=10.9
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 8983799999689998
Q 000773 2 TLLLGPPSSGKTTLLL 17 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~ 17 (1293)
.+|.|++||||||+|-
T Consensus 17 ~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVIT 32 (306)
T ss_dssp EEECCCTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHH
T ss_conf 8999628843899999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.27 E-value=0.17 Score=22.87 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=25.9
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 56616839999979996099999989699
Q 000773 728 SAFRPGVLAALMGVSGAGKTTLMDVLAGR 756 (1293)
Q Consensus 728 ~~i~~G~~~ai~G~sGaGKtTLl~~l~g~ 756 (1293)
|-++.|.++-+-||+|+|||||...++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98667547898058765227999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.26 E-value=0.13 Score=23.62 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999799960999999896999
Q 000773 734 VLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 734 ~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+.++|=|+-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.24 E-value=0.14 Score=23.49 Aligned_cols=21 Identities=38% Similarity=0.298 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+||++||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999947898499999999998
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.08 E-value=0.17 Score=22.89 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|+|+..+|||||++.|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99997248869999999970412
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.96 E-value=0.17 Score=22.84 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=24.9
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 45661683999997999609999998969
Q 000773 727 TSAFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 727 s~~i~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
=..+-.|+..+|.|++|.|||+|+..++.
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ECCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 25636788777667999898999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=88.85 E-value=0.13 Score=23.61 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC-------CCCHHH-HHHHHHHHHHH---H-HCCCEEEEEECC
Q ss_conf 89999999999951997789959999-------999999-99999999998---7-389989999269
Q 000773 850 EQRKRLTIAVELVANPSIIFMDEPTS-------GLDARA-AAIVMRTVRNT---V-DTGRTVVCTIHQ 905 (1293)
Q Consensus 850 Gerkr~~ia~~l~~~p~il~lDEpts-------gLD~~~-~~~i~~~l~~~---~-~~g~tvi~~~H~ 905 (1293)
+|++--.+-.. +..|.|||+||--+ +.++.. .+.+-++|.++ . ..+.-||.++..
T Consensus 169 ~e~~~~~~f~~-a~~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 169 FNVFVDDIARA-MLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp HHHHHHHHHHH-HHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHH-HHHCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 78999999999-86265897410122212345678987413345156652035566788499983797
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.82 E-value=0.14 Score=23.42 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
=..|+|++|.|||++..-|+.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHH
T ss_conf 96798889886779999999999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.59 E-value=0.19 Score=22.52 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898379999968999898289899
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNR 25 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1293)
..|=|+-|+||||+++.|+..+..
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999888667899999999998656
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.48 E-value=0.15 Score=23.24 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+|=|+-|+||||+++.|+....
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC---
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989867789999999999817
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.46 E-value=0.13 Score=23.63 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=18.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9898379999968999898289
Q 000773 1 MTLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~ 22 (1293)
+.+|.|+.||||||+.+.|...
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799998899999999986
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.34 E-value=0.13 Score=23.61 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=19.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 989837999996899989828989
Q 000773 1 MTLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 1 ltaIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
+|.|.||+|+||||+.-.++....
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 899805777478999999999987
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=88.23 E-value=0.21 Score=22.22 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=23.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 168399999799960999999896999
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
..+-.++++|.+.+|||||+|.|.|+.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 775278998667544355542542661
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.07 E-value=0.17 Score=22.84 Aligned_cols=27 Identities=37% Similarity=0.461 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 168399999799960999999896999
Q 000773 731 RPGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 731 ~~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
+|.....++||+|+|||.|.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.53 E-value=0.16 Score=23.08 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 8983799999689998982
Q 000773 2 TLLLGPPSSGKTTLLLALA 20 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~ 20 (1293)
++++|..|+|||||++-+.
T Consensus 5 iv~lG~~~vGKTsll~r~~ 23 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMR 23 (200)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999998899999996
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.36 E-value=0.2 Score=22.41 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.+.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.29 E-value=0.2 Score=22.45 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=21.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 6168399999799960999999896999
Q 000773 730 FRPGVLAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 730 i~~G~~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.+|+. +..+||+|+|||-|-+.|+...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 78753-2441899863789999998644
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.21 E-value=0.22 Score=22.20 Aligned_cols=23 Identities=48% Similarity=0.736 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+.+||+|+|||-+-+.|+...+
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 24418998637899999986443
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.21 E-value=0.22 Score=22.12 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 89837999996899989828
Q 000773 2 TLLLGPPSSGKTTLLLALAG 21 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G 21 (1293)
++++|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999888999998840
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=86.90 E-value=0.18 Score=22.65 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.5
Q ss_pred CCCEEEEECCCCCCHHHHHHH
Q ss_conf 683999997999609999998
Q 000773 732 PGVLAALMGVSGAGKTTLMDV 752 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl~~ 752 (1293)
.+.++.|.||.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred CCCEEEEECCCCCCCEEHHHH
T ss_conf 088599976898875216999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=86.85 E-value=0.11 Score=24.14 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898379999968999898289899
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNR 25 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1293)
+++.|++|+||||+.+.+++.+++
T Consensus 31 vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 899889985299999999873798
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.81 E-value=0.21 Score=22.31 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999609999998969
Q 000773 735 LAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.+.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.70 E-value=0.24 Score=21.91 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 89837999996899989828989
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~ 24 (1293)
.+++|++|.|||++...++.++.
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67988898867799999999998
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=85.84 E-value=0.17 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 898379999968999898289899
Q 000773 2 TLLLGPPSSGKTTLLLALAGKLNR 25 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~~~ 25 (1293)
.+|=|+-||||||+++.|+-.+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.75 E-value=0.19 Score=22.57 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 8983799999689998
Q 000773 2 TLLLGPPSSGKTTLLL 17 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~ 17 (1293)
++|.|+.||||||.|-
T Consensus 27 ~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLT 42 (318)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCHHHHHH
T ss_conf 8999529866899999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.74 E-value=0.21 Score=22.26 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHH---CCCC
Q ss_conf 8983799999689998982---8989
Q 000773 2 TLLLGPPSSGKTTLLLALA---GKLN 24 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~---G~~~ 24 (1293)
.+|+||.|+|||||+.+|. |...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99996888869999999999779866
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.62 E-value=0.23 Score=22.02 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
.+|+||..+|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999958898099999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.21 E-value=0.4 Score=20.48 Aligned_cols=71 Identities=13% Similarity=0.289 Sum_probs=38.3
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99778995999999999999999999998738998999926998999999857521024968999379998916899999
Q 000773 864 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYY 943 (1293)
Q Consensus 864 ~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~~~~~~~~~~~f 943 (1293)
+.+++++||.- .|...++..+.+++.+-. .+..+|+++++++ .+... +.++ -..+..-|+.+ +++.++.
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~-~ll~t-----I~SR-c~~i~~~~~~~--~~~~~~L 176 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPP-AETWFFLATREPE-RLLAT-----LRSR-CRLHYLAPPPE--QYAVTWL 176 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCC-TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CCCEEEECHHH-HHHHHHHHHHHHHHHHHC-CCCEEEEEECCHH-HHHHH-----HCCE-EEEEECCCCCH--HHHHHHH
T ss_conf 64047731344-200001499999998501-1110455306865-51032-----0021-57882689999--9999999
Q ss_pred HH
Q ss_conf 82
Q 000773 944 EA 945 (1293)
Q Consensus 944 ~~ 945 (1293)
..
T Consensus 177 ~~ 178 (207)
T d1a5ta2 177 SR 178 (207)
T ss_dssp HH
T ss_pred HH
T ss_conf 97
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=84.91 E-value=0.26 Score=21.74 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8983799999689998982898
Q 000773 2 TLLLGPPSSGKTTLLLALAGKL 23 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~~ 23 (1293)
.++-|+-||||||+.+.++.-+
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9996687765889999987642
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.77 E-value=0.32 Score=21.10 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
=..|+|++|.|||++..-|+.+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73998358754479999999999
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=84.41 E-value=0.3 Score=21.34 Aligned_cols=18 Identities=56% Similarity=0.881 Sum_probs=11.7
Q ss_pred CCCEEEEECCCCCCHHHH
Q ss_conf 683999997999609999
Q 000773 732 PGVLAALMGVSGAGKTTL 749 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTL 749 (1293)
.|+.....|-||+|||||
T Consensus 13 ~~~~alfFGLSGTGKTTL 30 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTL 30 (313)
T ss_dssp TSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCCCCC
T ss_conf 898899970477985602
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.37 E-value=0.45 Score=20.17 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=38.9
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 97789959999999999999999999987389989999269989999998575210249689993799989168999998
Q 000773 865 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYSGPLGRNSHKVIEYYE 944 (1293)
Q Consensus 865 p~il~lDEptsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~g~~~~~~~~~~~~f~ 944 (1293)
.+++++||.-. |+..+...+.+.+.... .+..+|+++++++ .+... +.++ ...+...+... .++.++..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~-~i~~~-----i~SR-c~~i~~~~~~~--~~i~~~l~ 184 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQ-KLPVT-----ILSR-CLQFHLKALDV--EQIRHQLE 184 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHHH
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCC-CCEEEEEECCCCC-CCCHH-----HHHH-HCCCCCCCCCH--HHHHHHHH
T ss_conf 87999978110-89999999999985689-8869999738856-36765-----7612-10222246767--87666887
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=84.37 E-value=0.27 Score=21.57 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 99999799960999999
Q 000773 735 LAALMGVSGAGKTTLMD 751 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~ 751 (1293)
-+.|.|+.|+||||.+-
T Consensus 16 ~~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVIT 32 (306)
T ss_dssp EEEECCCTTSCHHHHHH
T ss_pred CEEEEEECCCCHHHHHH
T ss_conf 98999628843899999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.21 E-value=0.28 Score=21.49 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=39.2
Q ss_pred HHHHHHHHC--CCEEEEECCCCCCCHH---HHHHHHHHHHHH-HHCCCEEEEEECCCCHHHHHHHHHHHEEECCCEEEEE
Q ss_conf 999999519--9778995999999999---999999999998-7389989999269989999998575210249689993
Q 000773 856 TIAVELVAN--PSIIFMDEPTSGLDAR---AAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYS 929 (1293)
Q Consensus 856 ~ia~~l~~~--p~il~lDEptsgLD~~---~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~~g~~~~~ 929 (1293)
.|..++... +-|||+||.-+=+... ......++|+.. ++..-.+|.++. .+-+..+.+---|.+-=+.+.-
T Consensus 105 ~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT---~~ey~~~e~d~al~rrF~~v~v 181 (387)
T d1qvra2 105 AVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATT---LDEYREIEKDPALERRFQPVYV 181 (387)
T ss_dssp HHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEEC---HHHHHHHTTCTTTCSCCCCEEE
T ss_pred HHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEECC---HHHHHHHCCCHHHHHHCCCCCC
T ss_conf 9999850589966987240888842777877413899999997378851666368---9999876336799982461127
Q ss_pred CCCC
Q ss_conf 7999
Q 000773 930 GPLG 933 (1293)
Q Consensus 930 g~~~ 933 (1293)
.++.
T Consensus 182 ~ep~ 185 (387)
T d1qvra2 182 DEPT 185 (387)
T ss_dssp CCCC
T ss_pred CCCC
T ss_conf 9986
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.94 E-value=0.31 Score=21.22 Aligned_cols=21 Identities=43% Similarity=0.738 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 898379999968999898289
Q 000773 2 TLLLGPPSSGKTTLLLALAGK 22 (1293)
Q Consensus 2 taIlG~sGsGKSTLL~~L~G~ 22 (1293)
..|.|++|+|||||+..|+..
T Consensus 46 ~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 46 GLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp EEEEECSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 568679998878999999997
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=83.40 E-value=0.31 Score=21.23 Aligned_cols=17 Identities=59% Similarity=0.944 Sum_probs=12.1
Q ss_pred CCEEEEECCCCCCHHHH
Q ss_conf 83999997999609999
Q 000773 733 GVLAALMGVSGAGKTTL 749 (1293)
Q Consensus 733 G~~~ai~G~sGaGKtTL 749 (1293)
|+.....|.||.|||||
T Consensus 14 ~~valffGLSGTGKTTL 30 (318)
T d1j3ba1 14 GDVAVFFGLSGTGKTTL 30 (318)
T ss_dssp CCEEEEEECTTSCHHHH
T ss_pred CCEEEEECCCCCCCCCC
T ss_conf 98899973687981422
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.36 E-value=0.3 Score=21.34 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799960999999896999
Q 000773 735 LAALMGVSGAGKTTLMDVLAGRK 757 (1293)
Q Consensus 735 ~~ai~G~sGaGKtTLl~~l~g~~ 757 (1293)
.+.|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.75 E-value=0.28 Score=21.45 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=24.6
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 045661683999997999609999998969
Q 000773 726 VTSAFRPGVLAALMGVSGAGKTTLMDVLAG 755 (1293)
Q Consensus 726 vs~~i~~G~~~ai~G~sGaGKtTLl~~l~g 755 (1293)
.-..+-.|+..+|.|++|.|||+|+.-++.
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 346766787787656888885899999997
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.39 E-value=0.46 Score=20.11 Aligned_cols=19 Identities=47% Similarity=0.786 Sum_probs=11.6
Q ss_pred CCCEEEEECCCCCCHHHHH
Q ss_conf 6839999979996099999
Q 000773 732 PGVLAALMGVSGAGKTTLM 750 (1293)
Q Consensus 732 ~G~~~ai~G~sGaGKtTLl 750 (1293)
.|+.....|-||.|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCCCCCE
T ss_conf 8987999736778812051
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=80.96 E-value=0.28 Score=21.46 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.5
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 4566168399999799960999999896
Q 000773 727 TSAFRPGVLAALMGVSGAGKTTLMDVLA 754 (1293)
Q Consensus 727 s~~i~~G~~~ai~G~sGaGKtTLl~~l~ 754 (1293)
=..+-.|+..+|.|++|+|||+|+..+.
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 1454677667600677888579999977
|